BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.29
(685 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516115.1|CO516115 s13dSG65E0500039_445558 Glandular tr... 88 1e-017
gb|CO513351.1|CO513351 s13dSG38A0300017_129866 Glandular tr... 80 2e-015
gb|CO516018.1|CO516018 s13dSG64A0200005_445364 Glandular tr... 76 4e-014
gb|CO516125.1|CO516125 s13dSG65F0900079_445578 Glandular tr... 50 2e-006
gb|CO514287.1|CO514287 s13dSG76F1000079_157236 Glandular tr... 46 3e-005
>gb|CO516115.1|CO516115 s13dSG65E0500039_445558 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 403
Score = 87.7 bits (44), Expect = 1e-017
Identities = 98/116 (84%)
Strand = Plus / Plus
Query: 262 acctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcggcatctcg 321
|||||||||||||||||||||||||| || |||||||| || || |||||||| |||||
Sbjct: 242 acctacaagatctacatcttcaaggttctcaagcaggttcatcctgacatcggtatctca 301
Query: 322 tccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctcgc 377
|||||| ||| ||||||||| ||||||||| || ||||| |||||||||||
Sbjct: 302 agcaaggctatggggatcatgaacagcttcatcaatgatatctttgagaagctcgc 357
>gb|CO513351.1|CO513351 s13dSG38A0300017_129866 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 566
Score = 79.8 bits (40), Expect = 2e-015
Identities = 205/260 (78%)
Strand = Plus / Plus
Query: 262 acctacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcggcatctcg 321
||||||||||||||||||||||||| || |||||||| || || |||||||| |||||
Sbjct: 253 acctacaagatctacatcttcaagggtctcaagcaggttcatcctgacatcggtatctca 312
Query: 322 tccaaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagctcgcggcc 381
|||||| ||| ||||||||| ||||||||| || ||||| |||||||| ||
Sbjct: 313 agcaaggctatggggatcatgaacagcttcatcaatgatatctttgagaagcttgctcag 372
Query: 382 gagtccgccaagctggcgcgctacaacaagaagcccaccatcacctcccgcgagatccag 441
|| ||| ||| || ||| | ||||||||||| || ||||||||||| || ||||| |||
Sbjct: 373 gaatcctccagacttgcgaggtacaacaagaaacctaccatcacctctcgggagattcag 432
Query: 442 acctcggtgcgcctcgtcctccccggcgagctcgccaagcacgccgtctccgagggcact 501
|| | || || || || || || || || ||||||||||| || ||||| ||||| ||
Sbjct: 433 actgctgttcgtcttgttcttcctggtgaactcgccaagcatgctgtctctgagggaacc 492
Query: 502 aaggccgttacgaagttcac 521
||||| ||||| || |||||
Sbjct: 493 aaggctgttaccaaattcac 512
>gb|CO516018.1|CO516018 s13dSG64A0200005_445364 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 500
Score = 75.8 bits (38), Expect = 4e-014
Identities = 92/110 (83%)
Strand = Plus / Plus
Query: 265 tacaagatctacatcttcaaggtgctgaagcaggtgcaccccgacatcggcatctcgtcc 324
||||||||||||||||||||||| ||||| || || ||||| ||||| || ||||| |
Sbjct: 272 tacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagc 331
Query: 325 aaggccatgtccatcatgaactccttcatcaacgacatcttcgagaagct 374
|| |||||| ||||||||| |||||||| |||||||||||||||||
Sbjct: 332 aaagccatgggtatcatgaacagtttcatcaatgacatcttcgagaagct 381
Score = 38.2 bits (19), Expect = 0.008
Identities = 43/51 (84%)
Strand = Plus / Plus
Query: 76 atggcacccaaggcggagaagaagccggcggccaagaagcccgcggaggag 126
|||||||| |||| ||||||||||| |||| ||||| ||||| ||||||
Sbjct: 92 atggcaccaaagggagagaagaagccagcggagaagaaacccgcagaggag 142
Score = 36.2 bits (18), Expect = 0.031
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 400 cgctacaacaagaagcccaccatcac 425
||||||||||||||||| || |||||
Sbjct: 407 cgctacaacaagaagccaactatcac 432
>gb|CO516125.1|CO516125 s13dSG65F0900079_445578 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 363
Score = 50.1 bits (25), Expect = 2e-006
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 349 ttcatcaacgacatcttcgagaagctcgc 377
||||||||||||||||||||||| |||||
Sbjct: 20 ttcatcaacgacatcttcgagaaactcgc 48
>gb|CO514287.1|CO514287 s13dSG76F1000079_157236 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 521
Score = 46.1 bits (23), Expect = 3e-005
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 265 tacaagatctacatcttcaaggtgctgaagcaggt 299
|||||||| |||||||||||||| ||||| |||||
Sbjct: 218 tacaagatatacatcttcaaggttctgaaacaggt 252
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1792
Number of Sequences: 7669
Number of extensions: 1792
Number of successful extensions: 449
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 431
Number of HSP's gapped (non-prelim): 16
length of query: 685
length of database: 3,745,706
effective HSP length: 16
effective length of query: 669
effective length of database: 3,623,002
effective search space: 2423788338
effective search space used: 2423788338
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)