BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.287
(857 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516115.1|CO516115 s13dSG65E0500039_445558 Glandular tr... 90 3e-018
gb|CO516018.1|CO516018 s13dSG64A0200005_445364 Glandular tr... 82 7e-016
gb|CO513351.1|CO513351 s13dSG38A0300017_129866 Glandular tr... 78 1e-014
gb|CO514287.1|CO514287 s13dSG76F1000079_157236 Glandular tr... 50 3e-006
gb|CO516125.1|CO516125 s13dSG65F0900079_445578 Glandular tr... 46 4e-005
gb|CO514640.1|CO514640 s13dSG46C0600050_327940 Glandular tr... 36 0.039
dbj|AB028149.1| Medicago sativa MsU2 mRNA for uricase (Nod-... 34 0.16
dbj|AB028150.1| Medicago sativa MsU9 mRNA for uricase (Nod-... 34 0.16
>gb|CO516115.1|CO516115 s13dSG65E0500039_445558 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 403
Score = 89.7 bits (45), Expect = 3e-018
Identities = 108/129 (83%)
Strand = Plus / Plus
Query: 252 caagaagagcgtggagacgtacaagatctacatcttcaaggtgctgaagcaggtgcaccc 311
|||||||||||| || || ||||||||||||||||||||||| || |||||||| || ||
Sbjct: 226 caagaagagcgttgaaacctacaagatctacatcttcaaggttctcaagcaggttcatcc 285
Query: 312 ggacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatctt 371
|||||||| ||||| |||||| ||| ||||||||| ||||||||| || |||||
Sbjct: 286 tgacatcggtatctcaagcaaggctatggggatcatgaacagcttcatcaatgatatctt 345
Query: 372 cgagaagct 380
||||||||
Sbjct: 346 tgagaagct 354
>gb|CO516018.1|CO516018 s13dSG64A0200005_445364 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 500
Score = 81.8 bits (41), Expect = 7e-016
Identities = 107/129 (82%)
Strand = Plus / Plus
Query: 252 caagaagagcgtggagacgtacaagatctacatcttcaaggtgctgaagcaggtgcaccc 311
||||||||| || || || ||||||||||||||||||||||| ||||| || || |||||
Sbjct: 253 caagaagagtgttgaaacatacaagatctacatcttcaaggttctgaaacaagttcaccc 312
Query: 312 ggacatcggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatctt 371
||||| || ||||| ||| |||||| ||||||||| |||||||| ||||||||
Sbjct: 313 agacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatgacatctt 372
Query: 372 cgagaagct 380
|||||||||
Sbjct: 373 cgagaagct 381
Score = 36.2 bits (18), Expect = 0.039
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 406 cgctacaacaagaagcccaccatcac 431
||||||||||||||||| || |||||
Sbjct: 407 cgctacaacaagaagccaactatcac 432
>gb|CO513351.1|CO513351 s13dSG38A0300017_129866 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 566
Score = 77.8 bits (39), Expect = 1e-014
Identities = 213/271 (78%)
Strand = Plus / Plus
Query: 257 agagcgtggagacgtacaagatctacatcttcaaggtgctgaagcaggtgcacccggaca 316
||||||| || || |||||||||||||||||||||| || |||||||| || || ||||
Sbjct: 242 agagcgttgaaacctacaagatctacatcttcaagggtctcaagcaggttcatcctgaca 301
Query: 317 tcggcatctcctccaaggccatgtccatcatgaactccttcatcaacgacatcttcgaga 376
|||| ||||| |||||| ||| ||||||||| ||||||||| || ||||| ||||
Sbjct: 302 tcggtatctcaagcaaggctatggggatcatgaacagcttcatcaatgatatctttgaga 361
Query: 377 agctggccggcgaggccgccaagctcgcgcgctacaacaagaagcccaccatcacgtccc 436
|||| || || || ||| || ||| | ||||||||||| || |||||||| || |
Sbjct: 362 agcttgctcaggaatcctccagacttgcgaggtacaacaagaaacctaccatcacctctc 421
Query: 437 gcgagatccagacctccgtgcgcctcgtgctccccggcgagctcgccaagcacgccgtct 496
| ||||| ||||| | || || || || || || || || ||||||||||| || ||||
Sbjct: 422 gggagattcagactgctgttcgtcttgttcttcctggtgaactcgccaagcatgctgtct 481
Query: 497 ctgagggcaccaaggccgtcaccaagttcac 527
||||||| |||||||| || ||||| |||||
Sbjct: 482 ctgagggaaccaaggctgttaccaaattcac 512
>gb|CO514287.1|CO514287 s13dSG76F1000079_157236 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 521
Score = 50.1 bits (25), Expect = 3e-006
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 253 aagaagagcgtggagacgtacaagatctacatcttcaaggtgctgaagcaggt 305
||||| ||||| || || |||||||| |||||||||||||| ||||| |||||
Sbjct: 200 aagaaaagcgttgaaacatacaagatatacatcttcaaggttctgaaacaggt 252
>gb|CO516125.1|CO516125 s13dSG65F0900079_445578 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 363
Score = 46.1 bits (23), Expect = 4e-005
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 355 ttcatcaacgacatcttcgagaa 377
|||||||||||||||||||||||
Sbjct: 20 ttcatcaacgacatcttcgagaa 42
>gb|CO514640.1|CO514640 s13dSG46C0600050_327940 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 536
Score = 36.2 bits (18), Expect = 0.039
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 239 gcaagaagaagggcaagaagag 260
||||||||||| ||||||||||
Sbjct: 52 gcaagaagaagagcaagaagag 31
>dbj|AB028149.1| Medicago sativa MsU2 mRNA for uricase (Nod-35), complete cds
Length = 1255
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 688 caacactttgttgttga 704
|||||||||||||||||
Sbjct: 130 caacactttgttgttga 146
>dbj|AB028150.1| Medicago sativa MsU9 mRNA for uricase (Nod-35), complete cds
Length = 1303
Score = 34.2 bits (17), Expect = 0.16
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 688 caacactttgttgttga 704
|||||||||||||||||
Sbjct: 113 caacactttgttgttga 129
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1857
Number of Sequences: 7669
Number of extensions: 1857
Number of successful extensions: 535
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 515
Number of HSP's gapped (non-prelim): 19
length of query: 857
length of database: 3,745,706
effective HSP length: 16
effective length of query: 841
effective length of database: 3,623,002
effective search space: 3046944682
effective search space used: 3046944682
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)