BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.226
(818 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516115.1|CO516115 s13dSG65E0500039_445558 Glandular tr... 103 2e-022
gb|CO513351.1|CO513351 s13dSG38A0300017_129866 Glandular tr... 80 3e-015
gb|CO516018.1|CO516018 s13dSG64A0200005_445364 Glandular tr... 66 4e-011
gb|CO516125.1|CO516125 s13dSG65F0900079_445578 Glandular tr... 50 2e-006
gb|CO514287.1|CO514287 s13dSG76F1000079_157236 Glandular tr... 42 6e-004
>gb|CO516115.1|CO516115 s13dSG65E0500039_445558 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 403
Score = 103 bits (52), Expect = 2e-022
Identities = 112/132 (84%)
Strand = Plus / Minus
Query: 429 gcgagcttctcgaagatgtcgttgatgaaggaattcatgatggacatggccttggacgag 488
||||||||||| ||||| || ||||||||| |||||||| ||| |||||| |||
Sbjct: 357 gcgagcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgag 298
Query: 489 atgccgatgtcggggtgcacctgcttgagcaccttgaagatgtagatcttgtaggtctcc 548
|| |||||||| || || ||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 297 ataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggtttca 238
Query: 549 acgctcttcttg 560
||||||||||||
Sbjct: 237 acgctcttcttg 226
>gb|CO513351.1|CO513351 s13dSG38A0300017_129866 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 566
Score = 79.8 bits (40), Expect = 3e-015
Identities = 214/272 (78%)
Strand = Plus / Minus
Query: 284 agtgaacttggtgaccgcctttgtgccttcagagacggcgtgcttggcgagctcgccggg 343
|||||| ||||| || ||||| || || |||||||| || ||||||||||| || || ||
Sbjct: 513 agtgaatttggtaacagccttggttccctcagagacagcatgcttggcgagttcaccagg 454
Query: 344 taggacgaggcggacggaggtctggatctcgcgggaggtgatggtgggcttcttgttgta 403
|| || || || || | ||||| ||||| || ||||||||||| || |||||||||||
Sbjct: 453 aagaacaagacgaacagcagtctgaatctcccgagaggtgatggtaggtttcttgttgta 394
Query: 404 gcgggcgagcttggcggcctccgcggcgagcttctcgaagatgtcgttgatgaaggaatt 463
| || || ||| || ||| || |||||||| ||||| || ||||||||| ||
Sbjct: 393 cctcgcaagtctggaggattcctgagcaagcttctcaaagatatcattgatgaagctgtt 334
Query: 464 catgatggacatggccttggacgagatgccgatgtcggggtgcacctgcttgagcacctt 523
|||||| ||| |||||| ||||| |||||||| || || ||||||||||| ||||
Sbjct: 333 catgatccccatagccttgcttgagataccgatgtcaggatgaacctgcttgagaccctt 274
Query: 524 gaagatgtagatcttgtaggtctccacgctct 555
||||||||||||||||||||| || |||||||
Sbjct: 273 gaagatgtagatcttgtaggtttcaacgctct 242
>gb|CO516018.1|CO516018 s13dSG64A0200005_445364 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 500
Score = 65.9 bits (33), Expect = 4e-011
Identities = 105/129 (81%)
Strand = Plus / Minus
Query: 432 agcttctcgaagatgtcgttgatgaaggaattcatgatggacatggccttggacgagatg 491
||||||||||||||||| |||||||| |||||||| |||||| ||| |||||
Sbjct: 381 agcttctcgaagatgtcattgatgaaactgttcatgatacccatggctttgcttgagata 322
Query: 492 ccgatgtcggggtgcacctgcttgagcaccttgaagatgtagatcttgtaggtctccacg 551
|| ||||| ||||| || || || || ||||||||||||||||||||||| || || ||
Sbjct: 321 ccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgtatgtttcaaca 262
Query: 552 ctcttcttg 560
|||||||||
Sbjct: 261 ctcttcttg 253
Score = 36.2 bits (18), Expect = 0.037
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 381 gtgatggtgggcttcttgttgtagcg 406
||||| || |||||||||||||||||
Sbjct: 432 gtgatagttggcttcttgttgtagcg 407
>gb|CO516125.1|CO516125 s13dSG65F0900079_445578 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 363
Score = 50.1 bits (25), Expect = 2e-006
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 429 gcgagcttctcgaagatgtcgttgatgaa 457
||||| |||||||||||||||||||||||
Sbjct: 48 gcgagtttctcgaagatgtcgttgatgaa 20
>gb|CO514287.1|CO514287 s13dSG76F1000079_157236 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 521
Score = 42.1 bits (21), Expect = 6e-004
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 519 accttgaagatgtagatcttgtaggtctccacgctcttctt 559
|||||||||||||| |||||||| || || ||||| |||||
Sbjct: 240 accttgaagatgtatatcttgtatgtttcaacgcttttctt 200
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1635
Number of Sequences: 7669
Number of extensions: 1635
Number of successful extensions: 321
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 303
Number of HSP's gapped (non-prelim): 17
length of query: 818
length of database: 3,745,706
effective HSP length: 16
effective length of query: 802
effective length of database: 3,623,002
effective search space: 2905647604
effective search space used: 2905647604
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)