BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.211
(777 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO516018.1|CO516018 s13dSG64A0200005_445364 Glandular tr... 84 2e-016
gb|CO513351.1|CO513351 s13dSG38A0300017_129866 Glandular tr... 78 1e-014
gb|CO516115.1|CO516115 s13dSG65E0500039_445558 Glandular tr... 68 1e-011
gb|CO514287.1|CO514287 s13dSG76F1000079_157236 Glandular tr... 46 4e-005
gb|CO516125.1|CO516125 s13dSG65F0900079_445578 Glandular tr... 46 4e-005
>gb|CO516018.1|CO516018 s13dSG64A0200005_445364 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 500
Score = 83.8 bits (42), Expect = 2e-016
Identities = 93/110 (84%)
Strand = Plus / Minus
Query: 394 agcttctcgaagatgtcgttgatgaaggagttcatgatggacatggccttggacgagatg 453
||||||||||||||||| |||||||| ||||||||| |||||| ||| |||||
Sbjct: 381 agcttctcgaagatgtcattgatgaaactgttcatgatacccatggctttgcttgagata 322
Query: 454 ccaatgtccgggtgcacctgcttcagcaccttgaagatgtagatcttgta 503
|||||||| ||||| || || ||||| |||||||||||||||||||||||
Sbjct: 321 ccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgta 272
>gb|CO513351.1|CO513351 s13dSG38A0300017_129866 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 566
Score = 77.8 bits (39), Expect = 1e-014
Identities = 207/263 (78%)
Strand = Plus / Minus
Query: 241 gagctagtgaacttggtgacggctttggtgccctcggagacggcgtgcttggcgagctcg 300
||||||||||| ||||| || || ||||| ||||| ||||| || ||||||||||| ||
Sbjct: 518 gagctagtgaatttggtaacagccttggttccctcagagacagcatgcttggcgagttca 459
Query: 301 ccggggaggacgaggcggacggaggtctggatctcgcgggacgtgatggtaggcttcttg 360
|| || || || || || || | ||||| ||||| || || ||||||||||| ||||||
Sbjct: 458 ccaggaagaacaagacgaacagcagtctgaatctcccgagaggtgatggtaggtttcttg 399
Query: 361 ttgtaccgcgccagcttggccgcctccgccgccagcttctcgaagatgtcgttgatgaag 420
||||||| ||| || ||| | ||| || |||||||| ||||| || |||||||||
Sbjct: 398 ttgtacctcgcaagtctggaggattcctgagcaagcttctcaaagatatcattgatgaag 339
Query: 421 gagttcatgatggacatggccttggacgagatgccaatgtccgggtgcacctgcttcagc 480
||||||||| ||| |||||| ||||| || ||||| || || |||||||| ||
Sbjct: 338 ctgttcatgatccccatagccttgcttgagataccgatgtcaggatgaacctgcttgaga 279
Query: 481 accttgaagatgtagatcttgta 503
||||||||||||||||||||||
Sbjct: 278 cccttgaagatgtagatcttgta 256
>gb|CO516115.1|CO516115 s13dSG65E0500039_445558 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 403
Score = 67.9 bits (34), Expect = 1e-011
Identities = 91/110 (82%)
Strand = Plus / Minus
Query: 394 agcttctcgaagatgtcgttgatgaaggagttcatgatggacatggccttggacgagatg 453
|||||||| ||||| || ||||||||| ||||||||| ||| |||||| |||||
Sbjct: 354 agcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgagata 295
Query: 454 ccaatgtccgggtgcacctgcttcagcaccttgaagatgtagatcttgta 503
|| ||||| || || |||||||| || |||||||||||||||||||||||
Sbjct: 294 ccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgta 245
>gb|CO514287.1|CO514287 s13dSG76F1000079_157236 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 521
Score = 46.1 bits (23), Expect = 4e-005
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 469 acctgcttcagcaccttgaagatgtagatcttgta 503
||||| ||||| |||||||||||||| ||||||||
Sbjct: 252 acctgtttcagaaccttgaagatgtatatcttgta 218
>gb|CO516125.1|CO516125 s13dSG65F0900079_445578 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 363
Score = 46.1 bits (23), Expect = 4e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 397 ttctcgaagatgtcgttgatgaa 419
|||||||||||||||||||||||
Sbjct: 42 ttctcgaagatgtcgttgatgaa 20
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1206
Number of Sequences: 7669
Number of extensions: 1206
Number of successful extensions: 315
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 299
Number of HSP's gapped (non-prelim): 15
length of query: 777
length of database: 3,745,706
effective HSP length: 16
effective length of query: 761
effective length of database: 3,623,002
effective search space: 2757104522
effective search space used: 2757104522
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)