BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.12
(694 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO513351.1|CO513351 s13dSG38A0300017_129866 Glandular tr... 137 1e-032
gb|CO516115.1|CO516115 s13dSG65E0500039_445558 Glandular tr... 88 1e-017
gb|CO516018.1|CO516018 s13dSG64A0200005_445364 Glandular tr... 76 4e-014
gb|CO516125.1|CO516125 s13dSG65F0900079_445578 Glandular tr... 50 2e-006
gb|CO514287.1|CO514287 s13dSG76F1000079_157236 Glandular tr... 46 3e-005
gb|AW698726.1|AW698726 r296 non-glandular-haired subtracted... 42 5e-004
>gb|CO513351.1|CO513351 s13dSG38A0300017_129866 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 566
Score = 137 bits (69), Expect = 1e-032
Identities = 201/245 (82%)
Strand = Plus / Minus
Query: 208 gccttggtgccctcagagacagcgtgcttggcgagctcgccgggaaggacaaggcgaaca 267
|||||||| |||||||||||||| ||||||||||| || || ||||| ||||| ||||||
Sbjct: 497 gccttggttccctcagagacagcatgcttggcgagttcaccaggaagaacaagacgaaca 438
Query: 268 gaggtttgaatctcccgagaggtgatggtgggcttcttgttgtagcgcgcaagcttggca 327
| || ||||||||||||||||||||||| || ||||||||||| | |||||| |||
Sbjct: 437 gcagtctgaatctcccgagaggtgatggtaggtttcttgttgtacctcgcaagtctggag 378
Query: 328 gcctcgccggcgagcttctcgaagatgtcgttgatgaaggagttcatgatggacatggcc 387
| || || |||||||| ||||| || ||||||||| ||||||||| ||| |||
Sbjct: 377 gattcctgagcaagcttctcaaagatatcattgatgaagctgttcatgatccccatagcc 318
Query: 388 ttggaagagatgccgatgtcggggtggacctgcttcagcaccttgaagatgtagatcttg 447
||| ||||| |||||||| || || |||||||| || ||||||||||||||||||||
Sbjct: 317 ttgcttgagataccgatgtcaggatgaacctgcttgagacccttgaagatgtagatcttg 258
Query: 448 taggt 452
|||||
Sbjct: 257 taggt 253
>gb|CO516115.1|CO516115 s13dSG65E0500039_445558 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 403
Score = 87.7 bits (44), Expect = 1e-017
Identities = 98/116 (84%)
Strand = Plus / Minus
Query: 337 gcgagcttctcgaagatgtcgttgatgaaggagttcatgatggacatggccttggaagag 396
||||||||||| ||||| || ||||||||| ||||||||| ||| |||||| |||
Sbjct: 357 gcgagcttctcaaagatatcattgatgaagctgttcatgatccccatagccttgcttgag 298
Query: 397 atgccgatgtcggggtggacctgcttcagcaccttgaagatgtagatcttgtaggt 452
|| |||||||| || || |||||||| || ||||||||||||||||||||||||||
Sbjct: 297 ataccgatgtcaggatgaacctgcttgagaaccttgaagatgtagatcttgtaggt 242
>gb|CO516018.1|CO516018 s13dSG64A0200005_445364 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 500
Score = 75.8 bits (38), Expect = 4e-014
Identities = 92/110 (83%)
Strand = Plus / Minus
Query: 340 agcttctcgaagatgtcgttgatgaaggagttcatgatggacatggccttggaagagatg 399
||||||||||||||||| |||||||| ||||||||| |||||| ||| |||||
Sbjct: 381 agcttctcgaagatgtcattgatgaaactgttcatgatacccatggctttgcttgagata 322
Query: 400 ccgatgtcggggtggacctgcttcagcaccttgaagatgtagatcttgta 449
|| ||||| ||||| || || ||||| |||||||||||||||||||||||
Sbjct: 321 ccaatgtctgggtgaacttgtttcagaaccttgaagatgtagatcttgta 272
Score = 44.1 bits (22), Expect = 1e-004
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 247 ccgggaaggacaaggcgaacagaggtttgaatctcccgagaggtgatggtgggcttcttg 306
|||||||| ||||| | |||| ||| ||||| |||| || ||||| || |||||||||
Sbjct: 474 ccgggaagaacaagcctgacagcggtctgaatttccctggaagtgatagttggcttcttg 415
Query: 307 ttgtagcgcgcaag 320
|||||||| |||||
Sbjct: 414 ttgtagcgagcaag 401
Score = 32.2 bits (16), Expect = 0.49
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 585 ctccgctggcttcttc 600
||||||||||||||||
Sbjct: 124 ctccgctggcttcttc 109
>gb|CO516125.1|CO516125 s13dSG65F0900079_445578 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 363
Score = 50.1 bits (25), Expect = 2e-006
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 337 gcgagcttctcgaagatgtcgttgatgaa 365
||||| |||||||||||||||||||||||
Sbjct: 48 gcgagtttctcgaagatgtcgttgatgaa 20
Score = 42.1 bits (21), Expect = 5e-004
Identities = 90/113 (79%)
Strand = Plus / Minus
Query: 208 gccttggtgccctcagagacagcgtgcttggcgagctcgccgggaaggacaaggcgaaca 267
|||||||| |||||||| ||||| ||||| || | || |||||||| ||||| | |||
Sbjct: 177 gccttggtaccctcagaaacagcatgcttagccaattctccgggaagaacaagtctgaca 118
Query: 268 gaggtttgaatctcccgagaggtgatggtgggcttcttgttgtagcgcgcaag 320
| || ||||| |||| || ||||| || |||||||||||||| || |||||
Sbjct: 117 gcagtctgaatttccctggaagtgattgttggcttcttgttgtaacgagcaag 65
>gb|CO514287.1|CO514287 s13dSG76F1000079_157236 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 521
Score = 46.1 bits (23), Expect = 3e-005
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 415 acctgcttcagcaccttgaagatgtagatcttgta 449
||||| ||||| |||||||||||||| ||||||||
Sbjct: 252 acctgtttcagaaccttgaagatgtatatcttgta 218
Score = 36.2 bits (18), Expect = 0.032
Identities = 33/38 (86%)
Strand = Plus / Minus
Query: 271 gtttgaatctcccgagaggtgatggtgggcttcttgtt 308
||||||||||||| || ||||| || |||||||||||
Sbjct: 396 gtttgaatctcccttgaagtgatcgtcggcttcttgtt 359
>gb|AW698726.1|AW698726 r296 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 237
Score = 42.1 bits (21), Expect = 5e-004
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 171 actacctcaaatctaagatgatgtgaacttagtgacggccttggt 215
|||| ||||||||||||| |||||||||||| || ||||||||
Sbjct: 45 actaactcaaatctaagaacttgtgaacttagtcacagccttggt 1
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1543
Number of Sequences: 7669
Number of extensions: 1543
Number of successful extensions: 337
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 318
Number of HSP's gapped (non-prelim): 17
length of query: 694
length of database: 3,745,706
effective HSP length: 16
effective length of query: 678
effective length of database: 3,623,002
effective search space: 2456395356
effective search space used: 2456395356
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)