BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 11001390.3.1
(588 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AA735026.1|AA735026 EST00006 young root nodules Medicago... 30 1.6
gb|AI083095.1|AI083095 MS64t7 Medicago sativa shoot tip Lam... 30 1.6
gb|CO512410.1|CO512410 s13dSG80E1200087_114334 Glandular tr... 30 1.6
gb|CO512497.1|CO512497 s13dSG100G050003_114508 Glandular tr... 30 1.6
gb|CO512501.1|CO512501 s13dSG100G100007_114516 Glandular tr... 30 1.6
gb|CO513209.1|CO513209 s13dSG24C0200006_129582 Glandular tr... 30 1.6
gb|CO513436.1|CO513436 s13dSG10B0700057_130036 Glandular tr... 30 1.6
gb|CO513497.1|CO513497 s13dSG12B0100009_139776 Glandular tr... 30 1.6
gb|CO513643.1|CO513643 s13dSG17B0200013_140068 Glandular tr... 30 1.6
gb|CO513919.1|CO513919 s13dSG71B0700057_156500 Glandular tr... 30 1.6
gb|CO514260.1|CO514260 s13dSG76D0600046_157182 Glandular tr... 30 1.6
gb|CO514352.1|CO514352 s13dSG84E0400023_157366 Glandular tr... 30 1.6
gb|CO514841.1|CO514841 s13dSG59H1100096_328342 Glandular tr... 30 1.6
gb|CO515287.1|CO515287 s13dSG48B1000089_417633 Glandular tr... 30 1.6
gb|CO515300.1|CO515300 s13dSG48C1200098_417659 Glandular tr... 30 1.6
gb|CO515718.1|CO515718 s13dSG77A0900069_419585 Glandular tr... 30 1.6
gb|CO516450.1|CO516450 s13dSG28A0700051_446228 Glandular tr... 30 1.6
gb|CO517211.1|CO517211 s13dSG32A1100085_486018 Glandular tr... 30 1.6
gb|AF156782.1|AF156782 Medicago sativa nod factor binding l... 30 1.6
gb|AF411552.1| Medicago sativa cold-inducible protein mRNA,... 30 1.6
gb|AF461198.1| Medicago sativa nodule-enhanced malate dehyd... 30 1.6
gb|CO512079.1|CO512079 s13dSG18F0300027_108478 Glandular tr... 28 6.5
gb|CO513010.1|CO513010 s13dSG09E0900067_121946 Glandular tr... 28 6.5
gb|CO514582.1|CO514582 s13dSG42E0200019_327824 Glandular tr... 28 6.5
gb|CO515733.1|CO515733 s13dSG77B1200101_419615 Glandular tr... 28 6.5
gb|CO516953.1|CO516953 s13dSG58H1100094_468452 Glandular tr... 28 6.5
gb|L25042.1|ALFACCASE Medicago sativa acetyl-CoA carboxylas... 28 6.5
gb|M32883.1|ALFLEGHEMA Medicago sativa leghemoglobin gene, ... 28 6.5
gb|AF439379.1| Medicago sativa LTR retroelement MCIRE hypot... 28 6.5
gb|AF411545.1| Medicago sativa clone pMcig7 cold acclimatio... 28 6.5
emb|X68410.1|AMMSK2A A.medicago MSK-2 mRNA for protein kinase 28 6.5
>gb|AA735026.1|AA735026 EST00006 young root nodules Medicago sativa subsp. x varia cDNA
clone Mscp10 5' similar to pyruvate decarboxylase
homologue, mRNA sequence
Length = 463
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 99 ttggtggaaccaatt 113
|||||||||||||||
Sbjct: 379 ttggtggaaccaatt 393
>gb|AI083095.1|AI083095 MS64t7 Medicago sativa shoot tip Lambda ZAP cDNA library Medicago
sativa cDNA clone MS64 similar to WD-40 repeat protein
MSI4, mRNA sequence
Length = 390
Score = 30.2 bits (15), Expect = 1.6
Identities = 18/19 (94%)
Strand = Plus / Minus
Query: 311 catgtgtattccagtgaaa 329
|||||| ||||||||||||
Sbjct: 74 catgtgcattccagtgaaa 56
>gb|CO512410.1|CO512410 s13dSG80E1200087_114334 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 327
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 81 aaaattattacatgt 95
|||||||||||||||
Sbjct: 211 aaaattattacatgt 197
>gb|CO512497.1|CO512497 s13dSG100G050003_114508 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 544
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 471 cagactgtgaaactg 485
|||||||||||||||
Sbjct: 79 cagactgtgaaactg 93
>gb|CO512501.1|CO512501 s13dSG100G100007_114516 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 413
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 471 cagactgtgaaactg 485
|||||||||||||||
Sbjct: 79 cagactgtgaaactg 93
>gb|CO513209.1|CO513209 s13dSG24C0200006_129582 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 557
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 471 cagactgtgaaactg 485
|||||||||||||||
Sbjct: 25 cagactgtgaaactg 39
>gb|CO513436.1|CO513436 s13dSG10B0700057_130036 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 576
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 374 tcagcttttcttgcc 388
|||||||||||||||
Sbjct: 443 tcagcttttcttgcc 429
>gb|CO513497.1|CO513497 s13dSG12B0100009_139776 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 570
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 471 cagactgtgaaactg 485
|||||||||||||||
Sbjct: 77 cagactgtgaaactg 91
>gb|CO513643.1|CO513643 s13dSG17B0200013_140068 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 455
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 471 cagactgtgaaactg 485
|||||||||||||||
Sbjct: 79 cagactgtgaaactg 93
>gb|CO513919.1|CO513919 s13dSG71B0700057_156500 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 378
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 423 tttttggaaaatctt 437
|||||||||||||||
Sbjct: 357 tttttggaaaatctt 343
>gb|CO514260.1|CO514260 s13dSG76D0600046_157182 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 547
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 471 cagactgtgaaactg 485
|||||||||||||||
Sbjct: 15 cagactgtgaaactg 29
>gb|CO514352.1|CO514352 s13dSG84E0400023_157366 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 402
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 282 atgtaaaattagggc 296
|||||||||||||||
Sbjct: 70 atgtaaaattagggc 84
>gb|CO514841.1|CO514841 s13dSG59H1100096_328342 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 392
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 425 tttggaaaatcttat 439
|||||||||||||||
Sbjct: 48 tttggaaaatcttat 62
>gb|CO515287.1|CO515287 s13dSG48B1000089_417633 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 472
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 471 cagactgtgaaactg 485
|||||||||||||||
Sbjct: 76 cagactgtgaaactg 90
>gb|CO515300.1|CO515300 s13dSG48C1200098_417659 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 588
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 391 cattgatgaacataa 405
|||||||||||||||
Sbjct: 118 cattgatgaacataa 132
>gb|CO515718.1|CO515718 s13dSG77A0900069_419585 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 566
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 471 cagactgtgaaactg 485
|||||||||||||||
Sbjct: 79 cagactgtgaaactg 93
>gb|CO516450.1|CO516450 s13dSG28A0700051_446228 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 553
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Plus
Query: 471 cagactgtgaaactg 485
|||||||||||||||
Sbjct: 15 cagactgtgaaactg 29
>gb|CO517211.1|CO517211 s13dSG32A1100085_486018 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 641
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 326 gaaaatgtccacaca 340
|||||||||||||||
Sbjct: 527 gaaaatgtccacaca 513
>gb|AF156782.1|AF156782 Medicago sativa nod factor binding lectin-nucleotide
phosphohydrolase (LNP) mRNA, complete cds
Length = 1460
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 423 tttttggaaaatctt 437
|||||||||||||||
Sbjct: 128 tttttggaaaatctt 114
>gb|AF411552.1| Medicago sativa cold-inducible protein mRNA, partial cds
Length = 545
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 423 tttttggaaaatctt 437
|||||||||||||||
Sbjct: 518 tttttggaaaatctt 504
>gb|AF461198.1| Medicago sativa nodule-enhanced malate dehydrogenase gene, exons 1
and 2 and partial cds
Length = 3437
Score = 30.2 bits (15), Expect = 1.6
Identities = 15/15 (100%)
Strand = Plus / Minus
Query: 79 acaaaattattacat 93
|||||||||||||||
Sbjct: 1198 acaaaattattacat 1184
>gb|CO512079.1|CO512079 s13dSG18F0300027_108478 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 544
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 567 ataaacctagaatt 580
||||||||||||||
Sbjct: 107 ataaacctagaatt 120
>gb|CO513010.1|CO513010 s13dSG09E0900067_121946 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 68
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 378 cttttcttgccaac 391
||||||||||||||
Sbjct: 26 cttttcttgccaac 13
>gb|CO514582.1|CO514582 s13dSG42E0200019_327824 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 628
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 41 ttttgctgttgctc 54
||||||||||||||
Sbjct: 211 ttttgctgttgctc 224
>gb|CO515733.1|CO515733 s13dSG77B1200101_419615 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 567
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 561 gtaggcataaacct 574
||||||||||||||
Sbjct: 545 gtaggcataaacct 558
>gb|CO516953.1|CO516953 s13dSG58H1100094_468452 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 558
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 472 agactgtgaaactg 485
||||||||||||||
Sbjct: 5 agactgtgaaactg 18
>gb|L25042.1|ALFACCASE Medicago sativa acetyl-CoA carboxylase (ACCase) mRNA, complete cds
Length = 7175
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 82 aaattattacatgt 95
||||||||||||||
Sbjct: 7131 aaattattacatgt 7118
>gb|M32883.1|ALFLEGHEMA Medicago sativa leghemoglobin gene, complete cds
Length = 3228
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 279 attatgtaaaatta 292
||||||||||||||
Sbjct: 2365 attatgtaaaatta 2378
>gb|AF439379.1| Medicago sativa LTR retroelement MCIRE hypothetical protein mRNA,
complete cds
Length = 4717
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 189 taagacaacctaag 202
||||||||||||||
Sbjct: 395 taagacaacctaag 382
>gb|AF411545.1| Medicago sativa clone pMcig7 cold acclimation-specific mRNA
sequence
Length = 3129
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Minus
Query: 189 taagacaacctaag 202
||||||||||||||
Sbjct: 398 taagacaacctaag 385
>emb|X68410.1|AMMSK2A A.medicago MSK-2 mRNA for protein kinase
Length = 1543
Score = 28.2 bits (14), Expect = 6.5
Identities = 14/14 (100%)
Strand = Plus / Plus
Query: 477 gtgaaactgtggct 490
||||||||||||||
Sbjct: 344 gtgaaactgtggct 357
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: May 2, 2006 2:40 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1380
Number of Sequences: 7669
Number of extensions: 1380
Number of successful extensions: 377
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 344
Number of HSP's gapped (non-prelim): 33
length of query: 588
length of database: 3,745,706
effective HSP length: 16
effective length of query: 572
effective length of database: 3,623,002
effective search space: 2072357144
effective search space used: 2072357144
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)