BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCL24b11.yg.2.1
         (520 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AV923333.1|AV923333  AV923333 K. Sato unpublished cDNA li...    90   8e-017
gb|AV928513.1|AV928513  AV928513 K. Sato unpublished cDNA li...    90   8e-017
gb|BI958555.1|BI958555  HVSMEn0015J16f Hordeum vulgare rachi...    84   5e-015
gb|BF259974.3|BF259974  HVSMEf0020M07f Hordeum vulgare seedl...    82   2e-014
gb|BE411751.1|BE411751  ISC008.H06F990806 ITEC ISC Barley Le...    50   7e-005
gb|AL503512.1|AL503512  AL503512 Hordeum vulgare Barke roots...    50   7e-005
gb|BG368285.2|BG368285  HVSMEi0017H01f Hordeum vulgare 20 DA...    50   7e-005
gb|AV929091.1|AV929091  AV929091 K. Sato unpublished cDNA li...    50   7e-005
gb|BJ447699.1|BJ447699  BJ447699 K. Sato unpublished cDNA li...    50   7e-005
gb|BJ453328.1|BJ453328  BJ453328 K. Sato unpublished cDNA li...    50   7e-005
gb|BJ455449.1|BJ455449  BJ455449 K. Sato unpublished cDNA li...    50   7e-005
gb|BJ460872.1|BJ460872  BJ460872 K. Sato unpublished cDNA li...    50   7e-005
gb|BJ468308.1|BJ468308  BJ468308 K. Sato unpublished cDNA li...    50   7e-005
gb|BQ660756.1|BQ660756  HI05F03u HI Hordeum vulgare subsp. v...    50   7e-005
gb|CA030609.1|CA030609  HX07J05r HX Hordeum vulgare subsp. v...    50   7e-005
gb|CA030647.1|CA030647  HX07L05r HX Hordeum vulgare subsp. v...    50   7e-005
gb|CB875201.1|CB875201  HX07J05w HX Hordeum vulgare subsp. v...    50   7e-005
gb|CB875240.1|CB875240  HX07L05w HX Hordeum vulgare subsp. v...    50   7e-005
gb|BI960696.1|BI960696  HVSMEn0025O11f Hordeum vulgare rachi...    46   0.001
gb|BQ469740.1|BQ469740  HZ01L16r HZ Hordeum vulgare subsp. v...    44   0.004
gb|AL503049.1|AL503049  AL503049 Hordeum vulgare Barke roots...    42   0.018
gb|AL499724.1|AL499724  AL499724 Hordeum vulgare Barke etiol...    38   0.28 
>gb|AV923333.1|AV923333 AV923333 K. Sato unpublished cDNA library, cv. Haruna Nijo second
           leaf stage seedling leaves Hordeum vulgare subsp.
           vulgare cDNA clone basd12l12 5', mRNA sequence
          Length = 656

 Score = 89.7 bits (45), Expect = 8e-017
 Identities = 66/73 (90%)
 Strand = Plus / Minus

                                                                       
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
           |||||||||||||||| |||||||| || |||||||||||||||||| ||||| ||||  
Sbjct: 567 cccttgaggaacgggtagaggtggacgatgacccagaaggagaagaagagcttcccgaag 508

                        
Query: 479 agcgggccccagg 491
           |||||||||||||
Sbjct: 507 agcgggccccagg 495
>gb|AV928513.1|AV928513 AV928513 K. Sato unpublished cDNA library, cv. Haruna Nijo second
           leaf stage seedling leaves Hordeum vulgare subsp.
           vulgare cDNA clone basdl12 3', mRNA sequence
          Length = 661

 Score = 89.7 bits (45), Expect = 8e-017
 Identities = 66/73 (90%)
 Strand = Plus / Plus

                                                                       
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
           |||||||||||||||| |||||||| || |||||||||||||||||| ||||| ||||  
Sbjct: 318 cccttgaggaacgggtagaggtggacgatgacccagaaggagaagaagagcttcccgaag 377

                        
Query: 479 agcgggccccagg 491
           |||||||||||||
Sbjct: 378 agcgggccccagg 390
>gb|BI958555.1|BI958555 HVSMEn0015J16f Hordeum vulgare rachis EST library HVcDNA0015
           (normal) Hordeum vulgare subsp. vulgare cDNA clone
           HVSMEn0015J16f, mRNA sequence
          Length = 631

 Score = 83.8 bits (42), Expect = 5e-015
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                       
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
           |||||||||||||||| |||||||| || |||||| ||||||||||| ||||| ||||  
Sbjct: 363 cccttgaggaacgggtagaggtggacgatgacccanaaggagaagaagagcttcccgaag 422

                        
Query: 479 agcgggccccagg 491
           |||||||||||||
Sbjct: 423 agcgggccccagg 435
>gb|BF259974.3|BF259974 HVSMEf0020M07f Hordeum vulgare seedling root EST library HVcDNA0007
           (Etiolated and unstressed) Hordeum vulgare subsp.
           vulgare cDNA clone HVSMEf0020M07f, mRNA sequence
          Length = 533

 Score = 81.8 bits (41), Expect = 2e-014
 Identities = 65/73 (89%)
 Strand = Plus / Minus

                                                                       
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
           |||||||||||||||| |||||| | || |||||||||||||||||| ||||| ||||  
Sbjct: 439 cccttgaggaacgggtagaggtgaacgatgacccagaaggagaagaagagcttcccgaag 380

                        
Query: 479 agcgggccccagg 491
           |||||||||||||
Sbjct: 379 agcgggccccagg 367
>gb|BE411751.1|BE411751 ISC008.H06F990806 ITEC ISC Barley Leaf Library Hordeum vulgare
           subsp. vulgare cDNA clone ISC008.H06, mRNA sequence
          Length = 527

 Score = 50.1 bits (25), Expect = 7e-005
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                       
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
           ||||||||||| |||| ||| |||||||  |||||||  |||||||| ||||| || |  
Sbjct: 231 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 172

                        
Query: 479 agcgggccccagg 491
           |||||||||||||
Sbjct: 171 agcgggccccagg 159
>gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
           cDNA clone HW02G16T 5', mRNA sequence
          Length = 700

 Score = 50.1 bits (25), Expect = 7e-005
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                       
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
           ||||||||||| |||| ||| |||||||  |||||||  |||||||| ||||| || |  
Sbjct: 496 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 437

                        
Query: 479 agcgggccccagg 491
           |||||||||||||
Sbjct: 436 agcgggccccagg 424
>gb|BG368285.2|BG368285 HVSMEi0017H01f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
           (20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
           HVSMEi0017H01f, mRNA sequence
          Length = 755

 Score = 50.1 bits (25), Expect = 7e-005
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                       
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
           ||||||||||| |||| ||| |||||||  |||||||  |||||||| ||||| || |  
Sbjct: 140 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 81

                        
Query: 479 agcgggccccagg 491
           |||||||||||||
Sbjct: 80  agcgggccccagg 68
>gb|AV929091.1|AV929091 AV929091 K. Sato unpublished cDNA library, cv. Haruna Nijo second
           leaf stage seedling leaves Hordeum vulgare subsp.
           vulgare cDNA clone basd20p06 3', mRNA sequence
          Length = 509

 Score = 50.1 bits (25), Expect = 7e-005
 Identities = 61/73 (83%)
 Strand = Plus / Plus

                                                                       
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
           ||||||||||| |||| ||| |||||||  |||||||  |||||||| ||||| || |  
Sbjct: 375 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 434

                        
Query: 479 agcgggccccagg 491
           |||||||||||||
Sbjct: 435 agcgggccccagg 447
>gb|BJ447699.1|BJ447699 BJ447699 K. Sato unpublished cDNA library, cv. Akashinriki
           vegetative stage leaves Hordeum vulgare subsp. vulgare
           cDNA clone baak16p07 5', mRNA sequence
          Length = 577

 Score = 50.1 bits (25), Expect = 7e-005
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                       
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
           ||||||||||| |||| ||| |||||||  |||||||  |||||||| ||||| || |  
Sbjct: 113 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 54

                        
Query: 479 agcgggccccagg 491
           |||||||||||||
Sbjct: 53  agcgggccccagg 41
>gb|BJ453328.1|BJ453328 BJ453328 K. Sato unpublished cDNA library, cv. Akashinriki
           vegetative stage leaves Hordeum vulgare subsp. vulgare
           cDNA clone baak42j03 5', mRNA sequence
          Length = 685

 Score = 50.1 bits (25), Expect = 7e-005
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                       
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
           ||||||||||| |||| ||| |||||||  |||||||  |||||||| ||||| || |  
Sbjct: 677 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 618

                        
Query: 479 agcgggccccagg 491
           |||||||||||||
Sbjct: 617 agcgggccccagg 605
>gb|BJ455449.1|BJ455449 BJ455449 K. Sato unpublished cDNA library, cv. Akashinriki
           vegetative stage leaves Hordeum vulgare subsp. vulgare
           cDNA clone baak16p07 3', mRNA sequence
          Length = 528

 Score = 50.1 bits (25), Expect = 7e-005
 Identities = 61/73 (83%)
 Strand = Plus / Plus

                                                                       
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
           ||||||||||| |||| ||| |||||||  |||||||  |||||||| ||||| || |  
Sbjct: 416 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 475

                        
Query: 479 agcgggccccagg 491
           |||||||||||||
Sbjct: 476 agcgggccccagg 488
>gb|BJ460872.1|BJ460872 BJ460872 K. Sato unpublished cDNA library, cv. Akashinriki
           vegetative stage leaves Hordeum vulgare subsp. vulgare
           cDNA clone baak42j03 3', mRNA sequence
          Length = 590

 Score = 50.1 bits (25), Expect = 7e-005
 Identities = 61/73 (83%)
 Strand = Plus / Plus

                                                                       
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
           ||||||||||| |||| ||| |||||||  |||||||  |||||||| ||||| || |  
Sbjct: 430 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 489

                        
Query: 479 agcgggccccagg 491
           |||||||||||||
Sbjct: 490 agcgggccccagg 502
>gb|BJ468308.1|BJ468308 BJ468308 K. Sato unpublished cDNA library, cv. Haruna Nijo
           germination shoots Hordeum vulgare subsp. vulgare cDNA
           clone bags38c07 3', mRNA sequence
          Length = 611

 Score = 50.1 bits (25), Expect = 7e-005
 Identities = 61/73 (83%)
 Strand = Plus / Plus

                                                                       
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
           ||||||||||| |||| ||| |||||||  |||||||  |||||||| ||||| || |  
Sbjct: 449 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 508

                        
Query: 479 agcgggccccagg 491
           |||||||||||||
Sbjct: 509 agcgggccccagg 521
>gb|BQ660756.1|BQ660756 HI05F03u HI Hordeum vulgare subsp. vulgare cDNA clone HI05F03
           3-PRIME, mRNA sequence
          Length = 539

 Score = 50.1 bits (25), Expect = 7e-005
 Identities = 61/73 (83%)
 Strand = Plus / Plus

                                                                       
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
           ||||||||||| |||| ||| |||||||  |||||||  |||||||| ||||| || |  
Sbjct: 277 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 336

                        
Query: 479 agcgggccccagg 491
           |||||||||||||
Sbjct: 337 agcgggccccagg 349
>gb|CA030609.1|CA030609 HX07J05r HX Hordeum vulgare subsp. vulgare cDNA clone HX07J05
           5-PRIME, mRNA sequence
          Length = 617

 Score = 50.1 bits (25), Expect = 7e-005
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                       
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
           ||||||||||| |||| ||| |||||||  |||||||  |||||||| ||||| || |  
Sbjct: 504 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 445

                        
Query: 479 agcgggccccagg 491
           |||||||||||||
Sbjct: 444 agcgggccccagg 432
>gb|CA030647.1|CA030647 HX07L05r HX Hordeum vulgare subsp. vulgare cDNA clone HX07L05
           5-PRIME, mRNA sequence
          Length = 638

 Score = 50.1 bits (25), Expect = 7e-005
 Identities = 61/73 (83%)
 Strand = Plus / Minus

                                                                       
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
           ||||||||||| |||| ||| |||||||  |||||||  |||||||| ||||| || |  
Sbjct: 504 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 445

                        
Query: 479 agcgggccccagg 491
           |||||||||||||
Sbjct: 444 agcgggccccagg 432
>gb|CB875201.1|CB875201 HX07J05w HX Hordeum vulgare subsp. vulgare cDNA clone HX07J05
           3-PRIME, mRNA sequence
          Length = 652

 Score = 50.1 bits (25), Expect = 7e-005
 Identities = 61/73 (83%)
 Strand = Plus / Plus

                                                                       
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
           ||||||||||| |||| ||| |||||||  |||||||  |||||||| ||||| || |  
Sbjct: 456 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 515

                        
Query: 479 agcgggccccagg 491
           |||||||||||||
Sbjct: 516 agcgggccccagg 528
>gb|CB875240.1|CB875240 HX07L05w HX Hordeum vulgare subsp. vulgare cDNA clone HX07L05
           3-PRIME, mRNA sequence
          Length = 654

 Score = 50.1 bits (25), Expect = 7e-005
 Identities = 61/73 (83%)
 Strand = Plus / Plus

                                                                       
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
           ||||||||||| |||| ||| |||||||  |||||||  |||||||| ||||| || |  
Sbjct: 457 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 516

                        
Query: 479 agcgggccccagg 491
           |||||||||||||
Sbjct: 517 agcgggccccagg 529
>gb|BI960696.1|BI960696 HVSMEn0025O11f Hordeum vulgare rachis EST library HVcDNA0015
           (normal) Hordeum vulgare subsp. vulgare cDNA clone
           HVSMEn0025O11f, mRNA sequence
          Length = 658

 Score = 46.1 bits (23), Expect = 0.001
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                       
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
           |||||||||||||||| ||| || | ||  |||||||||| |||||| ||||| ||||  
Sbjct: 317 cccttgaggaacgggtagagatgcacgatcacccagaaggcgaagaagagcttaccgaat 376

                      
Query: 479 agcgggcccca 489
           ||||| |||||
Sbjct: 377 agcggccccca 387
>gb|BQ469740.1|BQ469740 HZ01L16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ01L16
           5-PRIME, mRNA sequence
          Length = 403

 Score = 44.1 bits (22), Expect = 0.004
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                     
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccga 476
           ||||||||||| |||| ||| |||||||  |||||||  |||||||| ||||| ||||
Sbjct: 175 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccga 118
>gb|AL503049.1|AL503049 AL503049 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
           cDNA clone HW09I21u 3', mRNA sequence
          Length = 644

 Score = 42.1 bits (21), Expect = 0.018
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagctt 471
           ||||||||||| |||| ||| |||||||  |||||||  |||||||| |||||
Sbjct: 486 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctt 538
>gb|AL499724.1|AL499724 AL499724 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
           subsp. vulgare cDNA clone HK03B21r 3', mRNA sequence
          Length = 619

 Score = 38.2 bits (19), Expect = 0.28
 Identities = 58/71 (81%)
 Strand = Plus / Plus

                                                                       
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
           ||||||||||||||||  ||||| |  |  ||||| | ||||||||||| ||||||||  
Sbjct: 352 cccttgaggaacgggtacaggtgcataatcacccacatggagaagaacaccttgccgaag 411

                      
Query: 479 agcgggcccca 489
           ||||| |||||
Sbjct: 412 agcggccccca 422
  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 57,177
Number of Sequences: 312970
Number of extensions: 57177
Number of successful extensions: 16017
Number of sequences better than  0.5: 22
Number of HSP's better than  0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15995
Number of HSP's gapped (non-prelim): 22
length of query: 520
length of database: 175,134,539
effective HSP length: 18
effective length of query: 502
effective length of database: 169,501,079
effective search space: 85089541658
effective search space used: 85089541658
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)