BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCL24b11.yg.2.1
(520 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV923333.1|AV923333 AV923333 K. Sato unpublished cDNA li... 90 8e-017
gb|AV928513.1|AV928513 AV928513 K. Sato unpublished cDNA li... 90 8e-017
gb|BI958555.1|BI958555 HVSMEn0015J16f Hordeum vulgare rachi... 84 5e-015
gb|BF259974.3|BF259974 HVSMEf0020M07f Hordeum vulgare seedl... 82 2e-014
gb|BE411751.1|BE411751 ISC008.H06F990806 ITEC ISC Barley Le... 50 7e-005
gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots... 50 7e-005
gb|BG368285.2|BG368285 HVSMEi0017H01f Hordeum vulgare 20 DA... 50 7e-005
gb|AV929091.1|AV929091 AV929091 K. Sato unpublished cDNA li... 50 7e-005
gb|BJ447699.1|BJ447699 BJ447699 K. Sato unpublished cDNA li... 50 7e-005
gb|BJ453328.1|BJ453328 BJ453328 K. Sato unpublished cDNA li... 50 7e-005
gb|BJ455449.1|BJ455449 BJ455449 K. Sato unpublished cDNA li... 50 7e-005
gb|BJ460872.1|BJ460872 BJ460872 K. Sato unpublished cDNA li... 50 7e-005
gb|BJ468308.1|BJ468308 BJ468308 K. Sato unpublished cDNA li... 50 7e-005
gb|BQ660756.1|BQ660756 HI05F03u HI Hordeum vulgare subsp. v... 50 7e-005
gb|CA030609.1|CA030609 HX07J05r HX Hordeum vulgare subsp. v... 50 7e-005
gb|CA030647.1|CA030647 HX07L05r HX Hordeum vulgare subsp. v... 50 7e-005
gb|CB875201.1|CB875201 HX07J05w HX Hordeum vulgare subsp. v... 50 7e-005
gb|CB875240.1|CB875240 HX07L05w HX Hordeum vulgare subsp. v... 50 7e-005
gb|BI960696.1|BI960696 HVSMEn0025O11f Hordeum vulgare rachi... 46 0.001
gb|BQ469740.1|BQ469740 HZ01L16r HZ Hordeum vulgare subsp. v... 44 0.004
gb|AL503049.1|AL503049 AL503049 Hordeum vulgare Barke roots... 42 0.018
gb|AL499724.1|AL499724 AL499724 Hordeum vulgare Barke etiol... 38 0.28
>gb|AV923333.1|AV923333 AV923333 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd12l12 5', mRNA sequence
Length = 656
Score = 89.7 bits (45), Expect = 8e-017
Identities = 66/73 (90%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
|||||||||||||||| |||||||| || |||||||||||||||||| ||||| ||||
Sbjct: 567 cccttgaggaacgggtagaggtggacgatgacccagaaggagaagaagagcttcccgaag 508
Query: 479 agcgggccccagg 491
|||||||||||||
Sbjct: 507 agcgggccccagg 495
>gb|AV928513.1|AV928513 AV928513 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdl12 3', mRNA sequence
Length = 661
Score = 89.7 bits (45), Expect = 8e-017
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
|||||||||||||||| |||||||| || |||||||||||||||||| ||||| ||||
Sbjct: 318 cccttgaggaacgggtagaggtggacgatgacccagaaggagaagaagagcttcccgaag 377
Query: 479 agcgggccccagg 491
|||||||||||||
Sbjct: 378 agcgggccccagg 390
>gb|BI958555.1|BI958555 HVSMEn0015J16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0015J16f, mRNA sequence
Length = 631
Score = 83.8 bits (42), Expect = 5e-015
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
|||||||||||||||| |||||||| || |||||| ||||||||||| ||||| ||||
Sbjct: 363 cccttgaggaacgggtagaggtggacgatgacccanaaggagaagaagagcttcccgaag 422
Query: 479 agcgggccccagg 491
|||||||||||||
Sbjct: 423 agcgggccccagg 435
>gb|BF259974.3|BF259974 HVSMEf0020M07f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020M07f, mRNA sequence
Length = 533
Score = 81.8 bits (41), Expect = 2e-014
Identities = 65/73 (89%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
|||||||||||||||| |||||| | || |||||||||||||||||| ||||| ||||
Sbjct: 439 cccttgaggaacgggtagaggtgaacgatgacccagaaggagaagaagagcttcccgaag 380
Query: 479 agcgggccccagg 491
|||||||||||||
Sbjct: 379 agcgggccccagg 367
>gb|BE411751.1|BE411751 ISC008.H06F990806 ITEC ISC Barley Leaf Library Hordeum vulgare
subsp. vulgare cDNA clone ISC008.H06, mRNA sequence
Length = 527
Score = 50.1 bits (25), Expect = 7e-005
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| ||| ||||||| ||||||| |||||||| ||||| || |
Sbjct: 231 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 172
Query: 479 agcgggccccagg 491
|||||||||||||
Sbjct: 171 agcgggccccagg 159
>gb|AL503512.1|AL503512 AL503512 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02G16T 5', mRNA sequence
Length = 700
Score = 50.1 bits (25), Expect = 7e-005
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| ||| ||||||| ||||||| |||||||| ||||| || |
Sbjct: 496 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 437
Query: 479 agcgggccccagg 491
|||||||||||||
Sbjct: 436 agcgggccccagg 424
>gb|BG368285.2|BG368285 HVSMEi0017H01f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0017H01f, mRNA sequence
Length = 755
Score = 50.1 bits (25), Expect = 7e-005
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| ||| ||||||| ||||||| |||||||| ||||| || |
Sbjct: 140 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 81
Query: 479 agcgggccccagg 491
|||||||||||||
Sbjct: 80 agcgggccccagg 68
>gb|AV929091.1|AV929091 AV929091 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd20p06 3', mRNA sequence
Length = 509
Score = 50.1 bits (25), Expect = 7e-005
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| ||| ||||||| ||||||| |||||||| ||||| || |
Sbjct: 375 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 434
Query: 479 agcgggccccagg 491
|||||||||||||
Sbjct: 435 agcgggccccagg 447
>gb|BJ447699.1|BJ447699 BJ447699 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16p07 5', mRNA sequence
Length = 577
Score = 50.1 bits (25), Expect = 7e-005
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| ||| ||||||| ||||||| |||||||| ||||| || |
Sbjct: 113 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 54
Query: 479 agcgggccccagg 491
|||||||||||||
Sbjct: 53 agcgggccccagg 41
>gb|BJ453328.1|BJ453328 BJ453328 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42j03 5', mRNA sequence
Length = 685
Score = 50.1 bits (25), Expect = 7e-005
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| ||| ||||||| ||||||| |||||||| ||||| || |
Sbjct: 677 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 618
Query: 479 agcgggccccagg 491
|||||||||||||
Sbjct: 617 agcgggccccagg 605
>gb|BJ455449.1|BJ455449 BJ455449 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16p07 3', mRNA sequence
Length = 528
Score = 50.1 bits (25), Expect = 7e-005
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| ||| ||||||| ||||||| |||||||| ||||| || |
Sbjct: 416 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 475
Query: 479 agcgggccccagg 491
|||||||||||||
Sbjct: 476 agcgggccccagg 488
>gb|BJ460872.1|BJ460872 BJ460872 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42j03 3', mRNA sequence
Length = 590
Score = 50.1 bits (25), Expect = 7e-005
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| ||| ||||||| ||||||| |||||||| ||||| || |
Sbjct: 430 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 489
Query: 479 agcgggccccagg 491
|||||||||||||
Sbjct: 490 agcgggccccagg 502
>gb|BJ468308.1|BJ468308 BJ468308 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags38c07 3', mRNA sequence
Length = 611
Score = 50.1 bits (25), Expect = 7e-005
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| ||| ||||||| ||||||| |||||||| ||||| || |
Sbjct: 449 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 508
Query: 479 agcgggccccagg 491
|||||||||||||
Sbjct: 509 agcgggccccagg 521
>gb|BQ660756.1|BQ660756 HI05F03u HI Hordeum vulgare subsp. vulgare cDNA clone HI05F03
3-PRIME, mRNA sequence
Length = 539
Score = 50.1 bits (25), Expect = 7e-005
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| ||| ||||||| ||||||| |||||||| ||||| || |
Sbjct: 277 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 336
Query: 479 agcgggccccagg 491
|||||||||||||
Sbjct: 337 agcgggccccagg 349
>gb|CA030609.1|CA030609 HX07J05r HX Hordeum vulgare subsp. vulgare cDNA clone HX07J05
5-PRIME, mRNA sequence
Length = 617
Score = 50.1 bits (25), Expect = 7e-005
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| ||| ||||||| ||||||| |||||||| ||||| || |
Sbjct: 504 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 445
Query: 479 agcgggccccagg 491
|||||||||||||
Sbjct: 444 agcgggccccagg 432
>gb|CA030647.1|CA030647 HX07L05r HX Hordeum vulgare subsp. vulgare cDNA clone HX07L05
5-PRIME, mRNA sequence
Length = 638
Score = 50.1 bits (25), Expect = 7e-005
Identities = 61/73 (83%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| ||| ||||||| ||||||| |||||||| ||||| || |
Sbjct: 504 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 445
Query: 479 agcgggccccagg 491
|||||||||||||
Sbjct: 444 agcgggccccagg 432
>gb|CB875201.1|CB875201 HX07J05w HX Hordeum vulgare subsp. vulgare cDNA clone HX07J05
3-PRIME, mRNA sequence
Length = 652
Score = 50.1 bits (25), Expect = 7e-005
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| ||| ||||||| ||||||| |||||||| ||||| || |
Sbjct: 456 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 515
Query: 479 agcgggccccagg 491
|||||||||||||
Sbjct: 516 agcgggccccagg 528
>gb|CB875240.1|CB875240 HX07L05w HX Hordeum vulgare subsp. vulgare cDNA clone HX07L05
3-PRIME, mRNA sequence
Length = 654
Score = 50.1 bits (25), Expect = 7e-005
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
||||||||||| |||| ||| ||||||| ||||||| |||||||| ||||| || |
Sbjct: 457 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccaaag 516
Query: 479 agcgggccccagg 491
|||||||||||||
Sbjct: 517 agcgggccccagg 529
>gb|BI960696.1|BI960696 HVSMEn0025O11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025O11f, mRNA sequence
Length = 658
Score = 46.1 bits (23), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
|||||||||||||||| ||| || | || |||||||||| |||||| ||||| ||||
Sbjct: 317 cccttgaggaacgggtagagatgcacgatcacccagaaggcgaagaagagcttaccgaat 376
Query: 479 agcgggcccca 489
||||| |||||
Sbjct: 377 agcggccccca 387
>gb|BQ469740.1|BQ469740 HZ01L16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ01L16
5-PRIME, mRNA sequence
Length = 403
Score = 44.1 bits (22), Expect = 0.004
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccga 476
||||||||||| |||| ||| ||||||| ||||||| |||||||| ||||| ||||
Sbjct: 175 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctttccga 118
>gb|AL503049.1|AL503049 AL503049 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09I21u 3', mRNA sequence
Length = 644
Score = 42.1 bits (21), Expect = 0.018
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagctt 471
||||||||||| |||| ||| ||||||| ||||||| |||||||| |||||
Sbjct: 486 cccttgaggaaggggtagagatggaggatcacccagattgagaagaagagctt 538
>gb|AL499724.1|AL499724 AL499724 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03B21r 3', mRNA sequence
Length = 619
Score = 38.2 bits (19), Expect = 0.28
Identities = 58/71 (81%)
Strand = Plus / Plus
Query: 419 cccttgaggaacgggtggaggtggaggacgacccagaaggagaagaacagcttgccgagc 478
|||||||||||||||| ||||| | | ||||| | ||||||||||| ||||||||
Sbjct: 352 cccttgaggaacgggtacaggtgcataatcacccacatggagaagaacaccttgccgaag 411
Query: 479 agcgggcccca 489
||||| |||||
Sbjct: 412 agcggccccca 422
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 57,177
Number of Sequences: 312970
Number of extensions: 57177
Number of successful extensions: 16017
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15995
Number of HSP's gapped (non-prelim): 22
length of query: 520
length of database: 175,134,539
effective HSP length: 18
effective length of query: 502
effective length of database: 169,501,079
effective search space: 85089541658
effective search space used: 85089541658
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)