BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QCH13e05.yg.2.1
         (577 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BJ467229.1|BJ467229  BJ467229 K. Sato unpublished cDNA li...   145   2e-033
gb|AJ461072.1|AJ461072  AJ461072 S00002 Hordeum vulgare subs...    42   0.020
gb|CD663377.1|CD663377  UCRHV18_05bb12_b1 Drought-stressed D...    42   0.020

>gb|BJ467229.1|BJ467229 BJ467229 K. Sato unpublished cDNA library, cv. Haruna Nijo
           germination shoots Hordeum vulgare subsp. vulgare cDNA
           clone bags26d08 3', mRNA sequence
          Length = 568

 Score =  145 bits (73), Expect = 2e-033
 Identities = 151/177 (85%)
 Strand = Plus / Plus

                                                                       
Query: 234 ttgcaacatgttcctcgttttgttttctgaaactgatcccagaggcacatcatatccctt 293
           |||||||| |||||||| ||||||||||| || |  ||||||||||||||||| | ||| 
Sbjct: 392 ttgcaacaggttcctcgctttgttttctggaatttgtcccagaggcacatcatctgccta 451

                                                                       
Query: 294 ggttcttggtaatgagcaatcacatagccatcctcgcatccttcaaccaaaatcctccca 353
           || || ||||| || |||| |||||| |||||||| || ||||| ||||| ||||| |||
Sbjct: 452 ggctcctggtagtgggcaaccacatacccatcctcacagccttccaccaagatccttcca 511

                                                                    
Query: 354 tcattctcatacttgacatccaagccatccttcttcatctcattgatccatattccc 410
           || ||||  ||| ||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 512 tcgttctggtacgtgacatcaaagccttccttcttcatctcattgatccatattccc 568



>gb|AJ461072.1|AJ461072 AJ461072 S00002 Hordeum vulgare subsp. vulgare cDNA clone
           S0000200064A07F1, mRNA sequence
          Length = 240

 Score = 42.1 bits (21), Expect = 0.020
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 398 gatccatattcccattgcgacatcctccagctt 430
           ||||||||||||||| || |||||||| |||||
Sbjct: 64  gatccatattcccatcgctacatcctcaagctt 32



>gb|CD663377.1|CD663377 UCRHV18_05bb12_b1 Drought-stressed Dicktoo barley epidermis cDNA
           library Hordeum vulgare subsp. vulgare cDNA clone
           UCRHV18_05bb12, mRNA sequence
          Length = 844

 Score = 42.1 bits (21), Expect = 0.020
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 398 gatccatattcccattgcgacatcctccagctt 430
           ||||||||||||||| || |||||||| |||||
Sbjct: 445 gatccatattcccatcgccacatcctcaagctt 477



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 48,726
Number of Sequences: 312970
Number of extensions: 48726
Number of successful extensions: 13707
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13702
Number of HSP's gapped (non-prelim): 5
length of query: 577
length of database: 175,134,539
effective HSP length: 19
effective length of query: 558
effective length of database: 169,188,109
effective search space: 94406964822
effective search space used: 94406964822
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)