BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG11e12.yg.2.1
(636 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA li... 42 0.022
gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA li... 42 0.022
gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, ... 42 0.022
gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA,... 42 0.022
gb|AV837105.1|AV837105 AV837105 K. Sato unpublished cDNA li... 40 0.086
gb|BF256571.3|BF256571 HVSMEf0010F23f Hordeum vulgare seedl... 40 0.086
gb|BE213731.3|BE213731 HV_CEb0001B22f Hordeum vulgare seedl... 40 0.086
gb|AJ436314.1|AJ436314 AJ436314 S00002 Hordeum vulgare subs... 40 0.086
gb|BQ459171.1|BQ459171 HA02B09r HA Hordeum vulgare subsp. v... 40 0.086
gb|BQ460087.1|BQ460087 HA07E08r HA Hordeum vulgare subsp. v... 40 0.086
gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA,... 40 0.086
gb|BQ764719.1|BQ764719 EBca01_SQ004_O13_R carpel, pre-anthe... 40 0.086
gb|BU980384.1|BU980384 HA20I05r HA Hordeum vulgare subsp. v... 40 0.086
gb|CA015646.1|CA015646 HT14P08r HT Hordeum vulgare subsp. v... 40 0.086
gb|CA025739.1|CA025739 HZ53A05r HZ Hordeum vulgare subsp. v... 40 0.086
gb|CA031618.1|CA031618 HX10J12r HX Hordeum vulgare subsp. v... 40 0.086
gb|CB879543.1|CB879543 HP02K14w HP Hordeum vulgare subsp. v... 40 0.086
gb|CB879594.1|CB879594 HP02O12w HP Hordeum vulgare subsp. v... 40 0.086
gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, ... 38 0.34
gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA li... 38 0.34
gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA li... 38 0.34
gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA li... 38 0.34
gb|BM928867.1|BM928867 LP300020 Lemma/palea-enriched cDNA l... 38 0.34
gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA li... 38 0.34
gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, ... 38 0.34
gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA,... 38 0.34
gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA li... 38 0.34
>gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-30
similar to Cytosolic GA3PDH gene, mRNA sequence
Length = 478
Score = 42.1 bits (21), Expect = 0.022
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 615 aagtacctgcccgggcggccg 635
|||||||||||||||||||||
Sbjct: 269 aagtacctgcccgggcggccg 289
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 617 gtacctgcccgggcggccg 635
|||||||||||||||||||
Sbjct: 302 gtacctgcccgggcggccg 284
>gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-108,
mRNA sequence
Length = 530
Score = 42.1 bits (21), Expect = 0.022
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 615 aagtacctgcccgggcggccg 635
|||||||||||||||||||||
Sbjct: 326 aagtacctgcccgggcggccg 346
>gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F09 5', mRNA sequence
Length = 387
Score = 42.1 bits (21), Expect = 0.022
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 615 aagtacctgcccgggcggccg 635
|||||||||||||||||||||
Sbjct: 332 aagtacctgcccgggcggccg 352
>gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I05 5', mRNA sequence
Length = 581
Score = 42.1 bits (21), Expect = 0.022
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 615 aagtacctgcccgggcggccg 635
|||||||||||||||||||||
Sbjct: 498 aagtacctgcccgggcggccg 518
>gb|AV837105.1|AV837105 AV837105 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd23m08, mRNA
sequence
Length = 515
Score = 40.1 bits (20), Expect = 0.086
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 580 tgcttgctccagacataaac 599
||||||||||||||||||||
Sbjct: 428 tgcttgctccagacataaac 447
>gb|BF256571.3|BF256571 HVSMEf0010F23f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010F23f, mRNA sequence
Length = 846
Score = 40.1 bits (20), Expect = 0.086
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 580 tgcttgctccagacataaac 599
||||||||||||||||||||
Sbjct: 469 tgcttgctccagacataaac 488
>gb|BE213731.3|BE213731 HV_CEb0001B22f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0001B22f, mRNA sequence
Length = 928
Score = 40.1 bits (20), Expect = 0.086
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 580 tgcttgctccagacataaac 599
||||||||||||||||||||
Sbjct: 602 tgcttgctccagacataaac 583
>gb|AJ436314.1|AJ436314 AJ436314 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200071D10F1, mRNA sequence
Length = 603
Score = 40.1 bits (20), Expect = 0.086
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 580 tgcttgctccagacataaac 599
||||||||||||||||||||
Sbjct: 80 tgcttgctccagacataaac 61
>gb|BQ459171.1|BQ459171 HA02B09r HA Hordeum vulgare subsp. vulgare cDNA clone HA02B09
5-PRIME, mRNA sequence
Length = 542
Score = 40.1 bits (20), Expect = 0.086
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 580 tgcttgctccagacataaac 599
||||||||||||||||||||
Sbjct: 129 tgcttgctccagacataaac 110
>gb|BQ460087.1|BQ460087 HA07E08r HA Hordeum vulgare subsp. vulgare cDNA clone HA07E08
5-PRIME, mRNA sequence
Length = 580
Score = 40.1 bits (20), Expect = 0.086
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 580 tgcttgctccagacataaac 599
||||||||||||||||||||
Sbjct: 164 tgcttgctccagacataaac 145
>gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I06 5', mRNA sequence
Length = 494
Score = 40.1 bits (20), Expect = 0.086
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 616 agtacctgcccgggcggccg 635
||||||||||||||||||||
Sbjct: 413 agtacctgcccgggcggccg 432
>gb|BQ764719.1|BQ764719 EBca01_SQ004_O13_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ004_O13 5', mRNA sequence
Length = 659
Score = 40.1 bits (20), Expect = 0.086
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 580 tgcttgctccagacataaac 599
||||||||||||||||||||
Sbjct: 582 tgcttgctccagacataaac 563
>gb|BU980384.1|BU980384 HA20I05r HA Hordeum vulgare subsp. vulgare cDNA clone HA20I05
5-PRIME, mRNA sequence
Length = 588
Score = 40.1 bits (20), Expect = 0.086
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 580 tgcttgctccagacataaac 599
||||||||||||||||||||
Sbjct: 178 tgcttgctccagacataaac 159
>gb|CA015646.1|CA015646 HT14P08r HT Hordeum vulgare subsp. vulgare cDNA clone HT14P08
5-PRIME, mRNA sequence
Length = 555
Score = 40.1 bits (20), Expect = 0.086
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 580 tgcttgctccagacataaac 599
||||||||||||||||||||
Sbjct: 531 tgcttgctccagacataaac 512
>gb|CA025739.1|CA025739 HZ53A05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53A05
5-PRIME, mRNA sequence
Length = 482
Score = 40.1 bits (20), Expect = 0.086
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 580 tgcttgctccagacataaac 599
||||||||||||||||||||
Sbjct: 193 tgcttgctccagacataaac 174
>gb|CA031618.1|CA031618 HX10J12r HX Hordeum vulgare subsp. vulgare cDNA clone HX10J12
5-PRIME, mRNA sequence
Length = 632
Score = 40.1 bits (20), Expect = 0.086
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 580 tgcttgctccagacataaac 599
||||||||||||||||||||
Sbjct: 570 tgcttgctccagacataaac 551
>gb|CB879543.1|CB879543 HP02K14w HP Hordeum vulgare subsp. vulgare cDNA clone HP02K14
3-PRIME, mRNA sequence
Length = 682
Score = 40.1 bits (20), Expect = 0.086
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 580 tgcttgctccagacataaac 599
||||||||||||||||||||
Sbjct: 526 tgcttgctccagacataaac 545
>gb|CB879594.1|CB879594 HP02O12w HP Hordeum vulgare subsp. vulgare cDNA clone HP02O12
3-PRIME, mRNA sequence
Length = 682
Score = 40.1 bits (20), Expect = 0.086
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 580 tgcttgctccagacataaac 599
||||||||||||||||||||
Sbjct: 525 tgcttgctccagacataaac 544
>gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_H07 5', mRNA sequence
Length = 422
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 617 gtacctgcccgggcggccg 635
|||||||||||||||||||
Sbjct: 341 gtacctgcccgggcggccg 359
>gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-6,
mRNA sequence
Length = 544
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 617 gtacctgcccgggcggccg 635
|||||||||||||||||||
Sbjct: 273 gtacctgcccgggcggccg 255
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 617 gtacctgcccgggcggccg 635
|||||||||||||||||||
Sbjct: 242 gtacctgcccgggcggccg 260
>gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-7,
mRNA sequence
Length = 420
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 617 gtacctgcccgggcggccg 635
|||||||||||||||||||
Sbjct: 29 gtacctgcccgggcggccg 11
>gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-59
similar to Rubisco small sub-unit gene, mRNA sequence
Length = 491
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 617 gtacctgcccgggcggccg 635
|||||||||||||||||||
Sbjct: 241 gtacctgcccgggcggccg 259
>gb|BM928867.1|BM928867 LP300020 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-20,
mRNA sequence
Length = 216
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 617 gtacctgcccgggcggccg 635
|||||||||||||||||||
Sbjct: 194 gtacctgcccgggcggccg 212
>gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-159
similar to putative ABC transporter, mRNA sequence
Length = 339
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 617 gtacctgcccgggcggccg 635
|||||||||||||||||||
Sbjct: 262 gtacctgcccgggcggccg 280
>gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F01 5', mRNA sequence
Length = 256
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 617 gtacctgcccgggcggccg 635
|||||||||||||||||||
Sbjct: 103 gtacctgcccgggcggccg 85
>gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_L04 5', mRNA sequence
Length = 454
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 617 gtacctgcccgggcggccg 635
|||||||||||||||||||
Sbjct: 103 gtacctgcccgggcggccg 85
>gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-21
similar to A. thaliana AtRer1A, Accession No. AY044321,
mRNA sequence
Length = 342
Score = 38.2 bits (19), Expect = 0.34
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 617 gtacctgcccgggcggccg 635
|||||||||||||||||||
Sbjct: 342 gtacctgcccgggcggccg 324
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 53,933
Number of Sequences: 312970
Number of extensions: 53933
Number of successful extensions: 15011
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14979
Number of HSP's gapped (non-prelim): 32
length of query: 636
length of database: 175,134,539
effective HSP length: 19
effective length of query: 617
effective length of database: 169,188,109
effective search space: 104389063253
effective search space used: 104389063253
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)