BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCF2e06.yg.2.1
(319 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE060320.2|BE060320 HVSMEg0011P14f Hordeum vulgare pre-a... 198 8e-050
gb|BG365276.1|BG365276 HVSMEi0002B22f Hordeum vulgare 20 DA... 198 8e-050
gb|BG368955.1|BG368955 HVSMEi0021I07f Hordeum vulgare 20 DA... 198 8e-050
gb|BI949474.1|BI949474 HVSMEl0014B17f Hordeum vulgare spike... 198 8e-050
gb|BG415034.1|BG415034 HVSMEk0004M12f Hordeum vulgare testa... 198 8e-050
gb|BG416850.1|BG416850 HVSMEk0014N09f Hordeum vulgare testa... 198 8e-050
gb|BG367939.2|BG367939 HVSMEi0014N22f Hordeum vulgare 20 DA... 198 8e-050
gb|BQ465545.1|BQ465545 HU03P12r HU Hordeum vulgare subsp. v... 198 8e-050
gb|BU973282.1|BU973282 HB24G11r BC Hordeum vulgare subsp. v... 198 8e-050
gb|CA006778.1|CA006778 HU05K21r HU Hordeum vulgare subsp. v... 198 8e-050
gb|CA008002.1|CA008002 HU09J23r HU Hordeum vulgare subsp. v... 198 8e-050
gb|CA011672.1|CA011672 HT03D16r HT Hordeum vulgare subsp. v... 198 8e-050
gb|CA012876.1|CA012876 HT06L10r HT Hordeum vulgare subsp. v... 198 8e-050
emb|X65871.1|HVSSYNMR H.vulgare mRNA for sucrose synthase 198 8e-050
gb|AV925318.1|AV925318 AV925318 K. Sato unpublished cDNA li... 182 5e-045
gb|AV933333.1|AV933333 AV933333 K. Sato unpublished cDNA li... 182 5e-045
gb|AU252357.1|AU252357 AU252357 salt-stressed barley root c... 182 5e-045
gb|AU252359.1|AU252359 AU252359 salt-stressed barley root c... 182 5e-045
gb|AL505351.1|AL505351 AL505351 Hordeum vulgare Barke roots... 176 3e-043
gb|BG365466.1|BG365466 HVSMEi0002M17f Hordeum vulgare 20 DA... 174 1e-042
gb|BU971201.1|BU971201 HB16O14r BC Hordeum vulgare subsp. v... 170 2e-041
gb|AV922975.1|AV922975 AV922975 K. Sato unpublished cDNA li... 167 3e-040
gb|BM817250.1|BM817250 HC110G04_T3.ab1 HC Hordeum vulgare s... 163 4e-039
gb|CA027932.1|CA027932 HZ60H16r HZ Hordeum vulgare subsp. v... 161 2e-038
gb|CA027988.1|CA027988 HZ60K10r HZ Hordeum vulgare subsp. v... 161 2e-038
gb|BE196617.3|BE196617 HVSMEh0092M19f Hordeum vulgare 5-45 ... 145 1e-033
gb|AL506015.1|AL506015 AL506015 Hordeum vulgare Barke devel... 129 6e-029
gb|BG369184.1|BG369184 HVSMEi0023A09f Hordeum vulgare 20 DA... 129 6e-029
gb|CK123581.1|CK123581 BES1824104i15 BES1824 Hordeum vulgar... 117 2e-025
gb|BE230866.2|BE230866 HVSMEg0001A18f Hordeum vulgare pre-a... 113 4e-024
gb|BG414333.2|BG414333 HVSMEk0001I07f Hordeum vulgare testa... 109 5e-023
gb|BQ465231.1|BQ465231 HU03A05r HU Hordeum vulgare subsp. v... 96 8e-019
gb|AL511324.1|AL511324 AL511324 Hordeum vulgare Barke devel... 94 3e-018
gb|BQ465969.1|BQ465969 HT01D06T HT Hordeum vulgare subsp. v... 94 3e-018
gb|CA029890.1|CA029890 HX05I01r HX Hordeum vulgare subsp. v... 92 1e-017
gb|CA031028.1|CA031028 HX08M24r HX Hordeum vulgare subsp. v... 92 1e-017
gb|AL506943.1|AL506943 AL506943 Hordeum vulgare Barke devel... 78 2e-013
gb|AL508345.1|AL508345 AL508345 Hordeum vulgare Barke devel... 78 2e-013
gb|AL508689.1|AL508689 AL508689 Hordeum vulgare Barke devel... 78 2e-013
gb|AL508802.1|AL508802 AL508802 Hordeum vulgare Barke devel... 78 2e-013
gb|BI949981.1|BI949981 HVSMEl0017H20f Hordeum vulgare spike... 78 2e-013
gb|BI950121.1|BI950121 HVSMEl0018N18f Hordeum vulgare spike... 78 2e-013
gb|BI951201.1|BI951201 HVSMEl0025A10f Hordeum vulgare spike... 78 2e-013
gb|BE193575.3|BE193575 HVSMEh0081M04f Hordeum vulgare 5-45 ... 78 2e-013
gb|BE194218.3|BE194218 HVSMEh0084K16f Hordeum vulgare 5-45 ... 78 2e-013
gb|BG369770.2|BG369770 HVSMEi0025P06f Hordeum vulgare 20 DA... 78 2e-013
gb|BG414980.2|BG414980 HVSMEk0004I12f Hordeum vulgare testa... 78 2e-013
gb|BG415722.2|BG415722 HVSMEk0007J09f Hordeum vulgare testa... 78 2e-013
gb|BQ459992.1|BQ459992 HA07I08r HA Hordeum vulgare subsp. v... 78 2e-013
gb|BQ460709.1|BQ460709 HA06C13r HA Hordeum vulgare subsp. v... 78 2e-013
gb|BQ464339.1|BQ464339 HF02A01r HF Hordeum vulgare subsp. v... 78 2e-013
gb|BQ754675.1|BQ754675 EBed01_SQ003_H22_R endosperm, 6 DPA,... 78 2e-013
gb|BU966933.1|BU966933 HB02M23r BC Hordeum vulgare subsp. v... 78 2e-013
gb|BU968793.1|BU968793 HB08J17r BC Hordeum vulgare subsp. v... 78 2e-013
gb|BU969810.1|BU969810 HB12K17r BC Hordeum vulgare subsp. v... 78 2e-013
gb|BU971939.1|BU971939 HB20C02r BC Hordeum vulgare subsp. v... 78 2e-013
gb|BU972542.1|BU972542 HB21P05r BC Hordeum vulgare subsp. v... 78 2e-013
gb|BU972845.1|BU972845 HB22O08r BC Hordeum vulgare subsp. v... 78 2e-013
gb|BU973694.1|BU973694 HB25K18r BC Hordeum vulgare subsp. v... 78 2e-013
gb|BU974376.1|BU974376 HB27L21r BC Hordeum vulgare subsp. v... 78 2e-013
gb|BU979768.1|BU979768 HA17D17r HA Hordeum vulgare subsp. v... 78 2e-013
gb|BU980323.1|BU980323 HA20F08r HA Hordeum vulgare subsp. v... 78 2e-013
gb|BU981230.1|BU981230 HA23A02r HA Hordeum vulgare subsp. v... 78 2e-013
gb|BU984072.1|BU984072 HA31O14r HA Hordeum vulgare subsp. v... 78 2e-013
gb|BU987212.1|BU987212 HF14B23r HF Hordeum vulgare subsp. v... 78 2e-013
gb|CA024190.1|CA024190 HZ48J21r HZ Hordeum vulgare subsp. v... 78 2e-013
gb|CK122773.1|CK122773 BES1824105l14 BES1824 Hordeum vulgar... 78 2e-013
gb|CK124492.1|CK124492 BES1824109f19 BES1824 Hordeum vulgar... 78 2e-013
gb|CK124965.1|CK124965 BES1824111A2d09 BES1824 Hordeum vulg... 78 2e-013
emb|X69931.1|HVRNASS H.vulgare mRNA for sucrose synthase 78 2e-013
gb|BU967777.1|BU967777 HB05F19r BC Hordeum vulgare subsp. v... 76 8e-013
gb|BU969651.1|BU969651 HB12C16r BC Hordeum vulgare subsp. v... 76 8e-013
gb|BI950999.1|BI950999 HVSMEl0023P13f Hordeum vulgare spike... 70 5e-011
gb|BI951289.1|BI951289 HVSMEl0025G08f Hordeum vulgare spike... 70 5e-011
gb|BG415200.1|BG415200 HVSMEk0005I13f Hordeum vulgare testa... 70 5e-011
gb|BG368222.2|BG368222 HVSMEi0016L23f Hordeum vulgare 20 DA... 70 5e-011
gb|BG417100.2|BG417100 HVSMEk0016D20f Hordeum vulgare testa... 70 5e-011
gb|BG418599.2|BG418599 HVSMEk0023G16f Hordeum vulgare testa... 70 5e-011
gb|BU973029.1|BU973029 HB23I05r BC Hordeum vulgare subsp. v... 70 5e-011
gb|DR421034.1|DR421034 BD14 14 DAF Barley kernel cDNA libra... 70 5e-011
gb|BU973336.1|BU973336 HB24J17r BC Hordeum vulgare subsp. v... 66 7e-010
gb|AL510063.1|AL510063 AL510063 Hordeum vulgare Barke devel... 64 3e-009
gb|BU989940.1|BU989940 HF23E03r HF Hordeum vulgare subsp. v... 62 1e-008
gb|CA007362.1|CA007362 HU07L06r HU Hordeum vulgare subsp. v... 62 1e-008
gb|CA007705.1|CA007705 HU08M22r HU Hordeum vulgare subsp. v... 62 1e-008
gb|BE195797.3|BE195797 HVSMEh0090H19f Hordeum vulgare 5-45 ... 60 5e-008
gb|BF623914.2|BF623914 HVSMEa0007L05f Hordeum vulgare seedl... 58 2e-007
gb|BE060290.2|BE060290 HVSMEg0011O01f Hordeum vulgare pre-a... 58 2e-007
gb|BI958295.1|BI958295 HVSMEn0014E13f Hordeum vulgare rachi... 58 2e-007
gb|BQ465351.1|BQ465351 HU03G06r HU Hordeum vulgare subsp. v... 58 2e-007
gb|AW983411.2|AW983411 HVSMEg0010I18f Hordeum vulgare pre-a... 56 7e-007
gb|BI957197.1|BI957197 HVSMEn0008B10f Hordeum vulgare rachi... 50 4e-005
emb|Y15802.1|HVSUCSYN2 Hordeum vulgare Ss2 gene 50 4e-005
gb|BF624551.2|BF624551 HVSMEa0017B16f Hordeum vulgare seedl... 42 0.011
gb|BG416113.2|BG416113 HVSMEk0009N04f Hordeum vulgare testa... 42 0.011
gb|BG345116.2|BG345116 HVSMEg0018M02f Hordeum vulgare pre-a... 38 0.17
gb|BG369996.2|BG369996 HVSMEi0026N19f Hordeum vulgare 20 DA... 38 0.17
>gb|BE060320.2|BE060320 HVSMEg0011P14f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011P14f, mRNA sequence
Length = 538
Score = 198 bits (100), Expect = 8e-050
Identities = 189/220 (85%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||||||||||||||||||| ||||||||| | | || | |||| ||||||| |
Sbjct: 124 tggccatacctggagacatacaccgaggatgttgcaaacgaactcatgagggaaatgcag 183
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctc 219
|||||||||| | ||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 184 accaagcctgatttgatcattggcaactacagtgatggtaaccttgtggccactctgctt 243
Query: 220 gcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaatac 279
|| || || ||||| || || ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 244 gcccataaattgggtgttacccagtgcaccattgcccatgccttggagaaaaccaagtac 303
Query: 280 cccaactcggacatatacttggacaaattcgacagccagt 319
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 304 cccaactcagacatatacttggacaaattcgacagccagt 343
>gb|BG365276.1|BG365276 HVSMEi0002B22f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0002B22f, mRNA sequence
Length = 818
Score = 198 bits (100), Expect = 8e-050
Identities = 189/220 (85%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||||||||||||||||||| ||||||||| | | || | |||| ||||||| |
Sbjct: 27 tggccatacctggagacatacaccgaggatgttgcaaacgaactcatgagggaaatgcag 86
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctc 219
|||||||||| | ||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 87 accaagcctgatttgatcattggcaactacagtgatggtaaccttgtggccactctgctt 146
Query: 220 gcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaatac 279
|| || || ||||| || || ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 147 gcccataaattgggtgttacccagtgcaccattgcccatgccttggagaaaaccaagtac 206
Query: 280 cccaactcggacatatacttggacaaattcgacagccagt 319
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 207 cccaactcagacatatacttggacaaattcgacagccagt 246
>gb|BG368955.1|BG368955 HVSMEi0021I07f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0021I07f, mRNA sequence
Length = 595
Score = 198 bits (100), Expect = 8e-050
Identities = 189/220 (85%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||||||||||||||||||| ||||||||| | | || | |||| ||||||| |
Sbjct: 210 tggccatacctggagacatacaccgaggatgttgcaaacgaactcatgagggaaatgcag 269
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctc 219
|||||||||| | ||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 270 accaagcctgatttgatcattggcaactacagtgatggtaaccttgtggccactctgctt 329
Query: 220 gcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaatac 279
|| || || ||||| || || ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 330 gcccataaattgggtgttacccagtgcaccattgcccatgccttggagaaaaccaagtac 389
Query: 280 cccaactcggacatatacttggacaaattcgacagccagt 319
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 390 cccaactcagacatatacttggacaaattcgacagccagt 429
>gb|BI949474.1|BI949474 HVSMEl0014B17f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0014B17f, mRNA sequence
Length = 874
Score = 198 bits (100), Expect = 8e-050
Identities = 189/220 (85%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||||||||||||||||||| ||||||||| | | || | |||| ||||||| |
Sbjct: 285 tggccatacctggagacatacaccgaggatgttgcaaacgaactcatgagggaaatgcag 344
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctc 219
|||||||||| | ||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 345 accaagcctgatttgatcattggcaactacagtgatggtaaccttgtggccactctgctt 404
Query: 220 gcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaatac 279
|| || || ||||| || || ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 405 gcccataaattgggtgttacccagtgcaccattgcccatgccttggagaaaaccaagtac 464
Query: 280 cccaactcggacatatacttggacaaattcgacagccagt 319
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 465 cccaactcagacatatacttggacaaattcgacagccagt 504
>gb|BG415034.1|BG415034 HVSMEk0004M12f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0004M12f, mRNA sequence
Length = 907
Score = 198 bits (100), Expect = 8e-050
Identities = 189/220 (85%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||||||||||||||||||| ||||||||| | | || | |||| ||||||| |
Sbjct: 216 tggccatacctggagacatacaccgaggatgttgcaaacgaactcatgagggaaatgcag 275
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctc 219
|||||||||| | ||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 276 accaagcctgatttgatcattggcaactacagtgatggtaaccttgtggccactctgctt 335
Query: 220 gcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaatac 279
|| || || ||||| || || ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 336 gcccataaattgggtgttacccagtgcaccattgcccatgccttggagaaaaccaagtac 395
Query: 280 cccaactcggacatatacttggacaaattcgacagccagt 319
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 396 cccaactcagacatatacttggacaaattcgacagccagt 435
>gb|BG416850.1|BG416850 HVSMEk0014N09f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0014N09f, mRNA sequence
Length = 708
Score = 198 bits (100), Expect = 8e-050
Identities = 189/220 (85%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||||||||||||||||||| ||||||||| | | || | |||| ||||||| |
Sbjct: 41 tggccatacctggagacatacaccgaggatgttgcaaacgaactcatgagggaaatgcag 100
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctc 219
|||||||||| | ||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 101 accaagcctgatttgatcattggcaactacagtgatggtaaccttgtggccactctgctt 160
Query: 220 gcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaatac 279
|| || || ||||| || || ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 161 gcccataaattgggtgttacccagtgcaccattgcccatgccttggagaaaaccaagtac 220
Query: 280 cccaactcggacatatacttggacaaattcgacagccagt 319
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 221 cccaactcagacatatacttggacaaattcgacagccagt 260
>gb|BG367939.2|BG367939 HVSMEi0014N22f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0014N22f, mRNA sequence
Length = 830
Score = 198 bits (100), Expect = 8e-050
Identities = 189/220 (85%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||||||||||||||||||| ||||||||| | | || | |||| ||||||| |
Sbjct: 70 tggccatacctggagacatacaccgaggatgttgcaaacgaactcatgagggaaatgcag 129
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctc 219
|||||||||| | ||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 130 accaagcctgatttgatcattggcaactacagtgatggtaaccttgtggccactctgctt 189
Query: 220 gcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaatac 279
|| || || ||||| || || ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 190 gcccataaattgggtgttacccagtgcaccattgcccatgccttggagaaaaccaagtac 249
Query: 280 cccaactcggacatatacttggacaaattcgacagccagt 319
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 250 cccaactcagacatatacttggacaaattcgacagccagt 289
>gb|BQ465545.1|BQ465545 HU03P12r HU Hordeum vulgare subsp. vulgare cDNA clone HU03P12
5-PRIME, mRNA sequence
Length = 499
Score = 198 bits (100), Expect = 8e-050
Identities = 189/220 (85%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||||||||||||||||||| ||||||||| | | || | |||| ||||||| |
Sbjct: 182 tggccatacctggagacatacaccgaggatgttgcaaacgaactcatgagggaaatgcag 241
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctc 219
|||||||||| | ||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 242 accaagcctgatttgatcattggcaactacagtgatggtaaccttgtggccactctgctt 301
Query: 220 gcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaatac 279
|| || || ||||| || || ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 302 gcccataaattgggtgttacccagtgcaccattgcccatgccttggagaaaaccaagtac 361
Query: 280 cccaactcggacatatacttggacaaattcgacagccagt 319
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 362 cccaactcagacatatacttggacaaattcgacagccagt 401
>gb|BU973282.1|BU973282 HB24G11r BC Hordeum vulgare subsp. vulgare cDNA clone HB24G11
5-PRIME, mRNA sequence
Length = 490
Score = 198 bits (100), Expect = 8e-050
Identities = 189/220 (85%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||||||||||||||||||| ||||||||| | | || | |||| ||||||| |
Sbjct: 256 tggccatacctggagacatacaccgaggatgttgcaaacgaactcatgagggaaatgcag 315
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctc 219
|||||||||| | ||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 316 accaagcctgatttgatcattggcaactacagtgatggtaaccttgtggccactctgctt 375
Query: 220 gcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaatac 279
|| || || ||||| || || ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 376 gcccataaattgggtgttacccagtgcaccattgcccatgccttggagaaaaccaagtac 435
Query: 280 cccaactcggacatatacttggacaaattcgacagccagt 319
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 436 cccaactcagacatatacttggacaaattcgacagccagt 475
>gb|CA006778.1|CA006778 HU05K21r HU Hordeum vulgare subsp. vulgare cDNA clone HU05K21
5-PRIME, mRNA sequence
Length = 600
Score = 198 bits (100), Expect = 8e-050
Identities = 189/220 (85%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||||||||||||||||||| ||||||||| | | || | |||| ||||||| |
Sbjct: 73 tggccatacctggagacatacaccgaggatgttgcaaacgaactcatgagggaaatgcag 132
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctc 219
|||||||||| | ||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 133 accaagcctgatttgatcattggcaactacagtgatggtaaccttgtggccactctgctt 192
Query: 220 gcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaatac 279
|| || || ||||| || || ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 193 gcccataaattgggtgttacccagtgcaccattgcccatgccttggagaaaaccaagtac 252
Query: 280 cccaactcggacatatacttggacaaattcgacagccagt 319
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 253 cccaactcagacatatacttggacaaattcgacagccagt 292
>gb|CA008002.1|CA008002 HU09J23r HU Hordeum vulgare subsp. vulgare cDNA clone HU09J23
5-PRIME, mRNA sequence
Length = 659
Score = 198 bits (100), Expect = 8e-050
Identities = 189/220 (85%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||||||||||||||||||| ||||||||| | | || | |||| ||||||| |
Sbjct: 370 tggccatacctggagacatacaccgaggatgttgcaaacgaactcatgagggaaatgcag 429
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctc 219
|||||||||| | ||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 430 accaagcctgatttgatcattggcaactacagtgatggtaaccttgtggccactctgctt 489
Query: 220 gcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaatac 279
|| || || ||||| || || ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 490 gcccataaattgggtgttacccagtgcaccattgcccatgccttggagaaaaccaagtac 549
Query: 280 cccaactcggacatatacttggacaaattcgacagccagt 319
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 550 cccaactcagacatatacttggacaaattcgacagccagt 589
>gb|CA011672.1|CA011672 HT03D16r HT Hordeum vulgare subsp. vulgare cDNA clone HT03D16
5-PRIME, mRNA sequence
Length = 471
Score = 198 bits (100), Expect = 8e-050
Identities = 189/220 (85%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||||||||||||||||||| ||||||||| | | || | |||| ||||||| |
Sbjct: 130 tggccatacctggagacatacaccgaggatgttgcaaacgaactcatgagggaaatgcag 189
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctc 219
|||||||||| | ||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 190 accaagcctgatttgatcattggcaactacagtgatggtaaccttgtggccactctgctt 249
Query: 220 gcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaatac 279
|| || || ||||| || || ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 250 gcccataaattgggtgttacccagtgcaccattgcccatgccttggagaaaaccaagtac 309
Query: 280 cccaactcggacatatacttggacaaattcgacagccagt 319
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 310 cccaactcagacatatacttggacaaattcgacagccagt 349
>gb|CA012876.1|CA012876 HT06L10r HT Hordeum vulgare subsp. vulgare cDNA clone HT06L10
5-PRIME, mRNA sequence
Length = 677
Score = 198 bits (100), Expect = 8e-050
Identities = 189/220 (85%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||||||||||||||||||| ||||||||| | | || | |||| ||||||| |
Sbjct: 366 tggccatacctggagacatacaccgaggatgttgcaaacgaactcatgagggaaatgcag 425
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctc 219
|||||||||| | ||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 426 accaagcctgatttgatcattggcaactacagtgatggtaaccttgtggccactctgctt 485
Query: 220 gcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaatac 279
|| || || ||||| || || ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 486 gcccataaattgggtgttacccagtgcaccattgcccatgccttggagaaaaccaagtac 545
Query: 280 cccaactcggacatatacttggacaaattcgacagccagt 319
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 546 cccaactcagacatatacttggacaaattcgacagccagt 585
>emb|X65871.1|HVSSYNMR H.vulgare mRNA for sucrose synthase
Length = 2667
Score = 198 bits (100), Expect = 8e-050
Identities = 189/220 (85%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||||||||||||||||||| ||||||||| | | || | |||| ||||||| |
Sbjct: 1138 tggccatacctggagacatacaccgaggatgttgcaaacgaactcatgagggaaatgcag 1197
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctc 219
|||||||||| | ||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 1198 accaagcctgatttgatcattggcaactacagtgatggtaaccttgtggccactctgctt 1257
Query: 220 gcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaatac 279
|| || || ||||| || || ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 1258 gcccataaattgggtgttacccagtgcaccattgcccatgccttggagaaaaccaagtac 1317
Query: 280 cccaactcggacatatacttggacaaattcgacagccagt 319
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 1318 cccaactcagacatatacttggacaaattcgacagccagt 1357
>gb|AV925318.1|AV925318 AV925318 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22k18 5', mRNA sequence
Length = 651
Score = 182 bits (92), Expect = 5e-045
Identities = 187/220 (85%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||||||| |||||||| || ||||||||| | | || | |||| |||||||| |
Sbjct: 60 tggccataccttgagacatataccgaggatgttgcaaacgaactcatgagagaaatgcag 119
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctc 219
| |||||||| | ||||||||||||||||| || || ||||| || |||||||||||
Sbjct: 120 acaaagcctgatttgatcattggcaactacagtgacggtaaccttgtggccactctgctt 179
Query: 220 gcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaatac 279
|| || || |||||||| || ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 180 gcccataaattgggagttacccagtgcaccattgcccatgccttggagaaaaccaagtac 239
Query: 280 cccaactcggacatatacttggacaaattcgacagccagt 319
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 240 cccaactcagacatatacttggacaaattcgacagccagt 279
>gb|AV933333.1|AV933333 AV933333 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6f23 5', mRNA sequence
Length = 610
Score = 182 bits (92), Expect = 5e-045
Identities = 187/220 (85%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||||||| |||||||| || ||||||||| | | || | |||| |||||||| |
Sbjct: 379 tggccataccttgagacatataccgaggatgttgcaaacgaactcatgagagaaatgcag 438
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctc 219
| |||||||| | ||||||||||||||||| || || ||||| || |||||||||||
Sbjct: 439 acaaagcctgatttgatcattggcaactacagtgacggtaaccttgtggccactctgctt 498
Query: 220 gcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaatac 279
|| || || |||||||| || ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 499 gcccataaattgggagttacccagtgcaccattgcccatgccttggagaaaaccaagtac 558
Query: 280 cccaactcggacatatacttggacaaattcgacagccagt 319
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 559 cccaactcagacatatacttggacaaattcgacagccagt 598
>gb|AU252357.1|AU252357 AU252357 salt-stressed barley root cDNA Hordeum vulgare subsp.
vulgare cDNA clone BR-A06F similar to sucrose synthase,
mRNA sequence
Length = 492
Score = 182 bits (92), Expect = 5e-045
Identities = 187/220 (85%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||||||| |||||||| || ||||||||| | | || | |||| |||||||| |
Sbjct: 4 tggccataccttgagacatataccgaggatgttgcaaacgaactcatgagagaaatgcag 63
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctc 219
| |||||||| | ||||||||||||||||| || || ||||| || |||||||||||
Sbjct: 64 acaaagcctgatttgatcattggcaactacagtgacggtaaccttgtggccactctgctt 123
Query: 220 gcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaatac 279
|| || || |||||||| || ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 124 gcccataaattgggagttacccagtgcaccattgcccatgccttggagaaaaccaagtac 183
Query: 280 cccaactcggacatatacttggacaaattcgacagccagt 319
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 184 cccaactcagacatatacttggacaaattcgacagccagt 223
>gb|AU252359.1|AU252359 AU252359 salt-stressed barley root cDNA Hordeum vulgare subsp.
vulgare cDNA clone BR-A07 similar to sucrose synthase,
mRNA sequence
Length = 510
Score = 182 bits (92), Expect = 5e-045
Identities = 187/220 (85%)
Strand = Plus / Minus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||||||| |||||||| || ||||||||| | | || | |||| |||||||| |
Sbjct: 489 tggccataccttgagacatataccgaggatgttgcaaacgaactcatgagagaaatgcag 430
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctc 219
| |||||||| | ||||||||||||||||| || || ||||| || |||||||||||
Sbjct: 429 acaaagcctgatttgatcattggcaactacagtgacggtaaccttgtggccactctgctt 370
Query: 220 gcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaatac 279
|| || || |||||||| || ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 369 gcccataaattgggagttacccagtgcaccattgcccatgccttggagaaaaccaagtac 310
Query: 280 cccaactcggacatatacttggacaaattcgacagccagt 319
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 309 cccaactcagacatatacttggacaaattcgacagccagt 270
>gb|AL505351.1|AL505351 AL505351 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08D05V 5', mRNA sequence
Length = 532
Score = 176 bits (89), Expect = 3e-043
Identities = 182/215 (84%)
Strand = Plus / Plus
Query: 105 atacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcnggccaa 164
|||||||||||||||||| ||||||||| | | | | |||| |||| || | ||||
Sbjct: 1 atacctggagacatacaccgaggatgttgcaaacgagntcatgagggaaaggcagaccaa 60
Query: 165 gcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctcgcgca 224
|||||| | ||||||||||||||||| ||||| ||||| || ||||||||||| || ||
Sbjct: 61 gcctgatttgatcattggcaactacagngatggtaaccttgtggccactctgcttgccca 120
Query: 225 caagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaataccccaa 284
|| ||||| || || ||||| ||||| || |||||||||||||||||||| ||||||||
Sbjct: 121 taaattgggtgttacccagtgcaccattgcccatgccttggagaaaaccaagtaccccaa 180
Query: 285 ctcggacatatacttggacaaattcgacagccagt 319
||| |||||||||||||||||||||||||||||||
Sbjct: 181 ctcagacatatacttggacaaattcgacagccagt 215
>gb|BG365466.1|BG365466 HVSMEi0002M17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0002M17f, mRNA sequence
Length = 789
Score = 174 bits (88), Expect = 1e-042
Identities = 186/220 (84%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||| ||||||||||||||| ||||||||| | | || | ||| ||||||| |
Sbjct: 123 tggccatgcctggagacatacaccgaggatgttgcaaacgaactggtgagggaaatgcag 182
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctc 219
|||||||||| | ||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 183 accaagcctgatttgatcattggcaactacagtgatggtaaccttgtggccactctgctt 242
Query: 220 gcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaatac 279
|| || || ||||| || || ||||| ||||| || |||||||||||||||||||| | |
Sbjct: 243 gcccataaattgggtgttacccagtgcaccattgcccatgccttggagaaaaccaagtgc 302
Query: 280 cccaactcggacatatacttggacaaattcgacagccagt 319
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 303 cccaactcagacatatacttggacaaattcgacagccagt 342
>gb|BU971201.1|BU971201 HB16O14r BC Hordeum vulgare subsp. vulgare cDNA clone HB16O14
5-PRIME, mRNA sequence
Length = 381
Score = 170 bits (86), Expect = 2e-041
Identities = 148/169 (87%)
Strand = Plus / Plus
Query: 151 gaaatgcnggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgcc 210
||||||| | |||||||||| | ||||||||||||||||| ||||| ||||| || |||
Sbjct: 31 gaaatgcagaccaagcctgatttgatcattggcaactacagtgatggtaaccttgtggcc 90
Query: 211 actctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaa 270
|||||||| || || || ||||| || || ||||| ||||| || |||||||||||||||
Sbjct: 91 actctgcttgcccataaattgggtgttacccagtgcaccattgcccatgccttggagaaa 150
Query: 271 accaaataccccaactcggacatatacttggacaaattcgacagccagt 319
||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 151 accaagtaccccaactcagacatatacttggacaaattcgacagccagt 199
>gb|AV922975.1|AV922975 AV922975 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd3d07 5', mRNA sequence
Length = 617
Score = 167 bits (84), Expect = 3e-040
Identities = 152/175 (86%)
Strand = Plus / Plus
Query: 145 atgaaagaaatgcnggccaagcctgaccttatcattggcaactacagcgatggcaaccta 204
|||| |||||||| | | |||||||| | ||||||||||||||||| || || |||||
Sbjct: 13 atgagagaaatgcagacaaagcctgatttgatcattggcaactacagtgacggtaacctt 72
Query: 205 gtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttg 264
|| ||||||||||| || || || |||||||| || ||||| ||||| || |||||||||
Sbjct: 73 gtggccactctgcttgcccataaattgggagttacccagtgcaccattgcccatgccttg 132
Query: 265 gagaaaaccaaataccccaactcggacatatacttggacaaattcgacagccagt 319
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 133 gagaaaaccaagtaccccaactcagacatatacttggacaaattcgacagccagt 187
>gb|BM817250.1|BM817250 HC110G04_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC110G04_T3.ab1 similar to Sucrose
alpha-glucosidase,Dextransucrase, mRNA sequence
Length = 914
Score = 163 bits (82), Expect = 4e-039
Identities = 186/221 (84%), Gaps = 1/221 (0%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||||||||||||||||||| ||||||||| | | || | |||| ||||||| |
Sbjct: 491 tggccatacctggagacatacaccgaggatgttgcaaacgaactcatgagggaaatgcag 550
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctc 219
|||||||||| | ||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 551 accaagcctgatttgatcattggcaactacagtgatggtaaccttgtggccactctgctt 610
Query: 220 gcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaaccaaatac 279
|| || || ||| | || || ||||| ||||| || |||||||||||||||||||||
Sbjct: 611 gcccataaattgngtgttacccagtgcaccattgcccatgccttggagaaaaccaaagta 670
Query: 280 cccaactcggacatatac-ttggacaaattcgacagccagt 319
|||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 671 cccaactcagacatatactttggacaaattcgacagccagt 711
>gb|CA027932.1|CA027932 HZ60H16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ60H16
5-PRIME, mRNA sequence
Length = 420
Score = 161 bits (81), Expect = 2e-038
Identities = 129/145 (88%)
Strand = Plus / Plus
Query: 175 atcattggcaactacagcgatggcaacctagtcgccactctgctcgcgcacaagttggga 234
||||||||||||||||| ||||| ||||| || ||||||||||| || || || |||||
Sbjct: 16 atcattggcaactacagtgatggtaaccttgtggccactctgcttgcccataaattgggt 75
Query: 235 gtcactcagtgtaccatcgctcatgccttggagaaaaccaaataccccaactcggacata 294
|| || ||||| ||||| || |||||||||||||||||||| ||||||||||| ||||||
Sbjct: 76 gttacccagtgcaccattgcccatgccttggagaaaaccaagtaccccaactcagacata 135
Query: 295 tacttggacaaattcgacagccagt 319
|||||||||||||||||||||||||
Sbjct: 136 tacttggacaaattcgacagccagt 160
>gb|CA027988.1|CA027988 HZ60K10r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ60K10
5-PRIME, mRNA sequence
Length = 466
Score = 161 bits (81), Expect = 2e-038
Identities = 129/145 (88%)
Strand = Plus / Plus
Query: 175 atcattggcaactacagcgatggcaacctagtcgccactctgctcgcgcacaagttggga 234
||||||||||||||||| ||||| ||||| || ||||||||||| || || || |||||
Sbjct: 16 atcattggcaactacagtgatggtaaccttgtggccactctgcttgcccataaattgggt 75
Query: 235 gtcactcagtgtaccatcgctcatgccttggagaaaaccaaataccccaactcggacata 294
|| || ||||| ||||| || |||||||||||||||||||| ||||||||||| ||||||
Sbjct: 76 gttacccagtgcaccattgcccatgccttggagaaaaccaagtaccccaactcagacata 135
Query: 295 tacttggacaaattcgacagccagt 319
|||||||||||||||||||||||||
Sbjct: 136 tacttggacaaattcgacagccagt 160
>gb|BE196617.3|BE196617 HVSMEh0092M19f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0092M19f, mRNA sequence
Length = 887
Score = 145 bits (73), Expect = 1e-033
Identities = 144/168 (85%)
Strand = Plus / Plus
Query: 152 aaatgcnggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgcca 211
|||||| | |||||||||| | ||||||||||||||||| ||||| ||||| || ||||
Sbjct: 2 aaatgcagaccaagcctgatttgatcattggcaactacagtgatggtaaccttgtggcca 61
Query: 212 ctctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaa 271
||||||| || || || ||||| || || ||||| ||||| || ||||||||||||||||
Sbjct: 62 ctctgcttgcccataaattgggtgttacccagtgcaccattgcccatgccttggagaaaa 121
Query: 272 ccaaataccccaactcggacatatacttggacaaattcgacagccagt 319
|||| | ||||||||| |||||||||||||||||||| ||||| ||||
Sbjct: 122 ccaagtgccccaactcagacatatacttggacaaattggacaggcagt 169
>gb|AL506015.1|AL506015 AL506015 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01H24T 5',
mRNA sequence
Length = 574
Score = 129 bits (65), Expect = 6e-029
Identities = 107/121 (88%)
Strand = Plus / Plus
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcat 258
||||| || ||||||||||| || || || ||||| || || ||||| ||||| || |||
Sbjct: 4 aaccttgtggccactctgcttgcccataaattgggtgttacccagtgcaccattgcccat 63
Query: 259 gccttggagaaaaccaaataccccaactcggacatatacttggacaaattcgacagccag 318
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 64 gccttggagaaaaccaagtaccccaactcagacatatacttggacaaattcgacagccag 123
Query: 319 t 319
|
Sbjct: 124 t 124
>gb|BG369184.1|BG369184 HVSMEi0023A09f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0023A09f, mRNA sequence
Length = 806
Score = 129 bits (65), Expect = 6e-029
Identities = 107/121 (88%)
Strand = Plus / Plus
Query: 199 aacctagtcgccactctgctcgcgcacaagttgggagtcactcagtgtaccatcgctcat 258
||||| || ||||||||||| || || || ||||| || || ||||| ||||| || |||
Sbjct: 2 aaccttgtggccactctgcttgcccataaattgggtgttacccagtgcaccattgcccat 61
Query: 259 gccttggagaaaaccaaataccccaactcggacatatacttggacaaattcgacagccag 318
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 62 gccttggagaaaaccaagtaccccaactcagacatatacttggacaaattcgacagccag 121
Query: 319 t 319
|
Sbjct: 122 t 122
>gb|CK123581.1|CK123581 BES1824104i15 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010I154 5-PRIME, mRNA sequence
Length = 657
Score = 117 bits (59), Expect = 2e-025
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactcggacatatacttg 300
||||| ||||| || |||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 34 cagtgcaccattgcccatgccttggagaaaaccaagtaccccaactcagacatatacttg 93
Query: 301 gacaaattcgacagccagt 319
|||||||||||||||||||
Sbjct: 94 gacaaattcgacagccagt 112
>gb|BE230866.2|BE230866 HVSMEg0001A18f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0001A18f, mRNA sequence
Length = 603
Score = 113 bits (57), Expect = 4e-024
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 247 accatcgctcatgccttggagaaaaccaaataccccaactcggacatatacttggacaaa 306
||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 1 accattgcccatgccttggagaaaaccaagtaccccaactcagacatatacttggacaaa 60
Query: 307 ttcgacagccagt 319
|||||||||||||
Sbjct: 61 ttcgacagccagt 73
>gb|BG414333.2|BG414333 HVSMEk0001I07f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0001I07f, mRNA sequence
Length = 570
Score = 109 bits (55), Expect = 5e-023
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 241 cagtgtaccatcgctcatgccttggagaaaaccaaataccccaactcggacatatacttg 300
||||| ||||| || ||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 18 cagtgcaccattgcccatgccttggagaaaaccaggtaccccaactcagacatatacttg 77
Query: 301 gacaaattcgacagccagt 319
|||||||||||||||||||
Sbjct: 78 gacaaattcgacagccagt 96
>gb|BQ465231.1|BQ465231 HU03A05r HU Hordeum vulgare subsp. vulgare cDNA clone HU03A05
5-PRIME, mRNA sequence
Length = 662
Score = 95.6 bits (48), Expect = 8e-019
Identities = 133/163 (81%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||||||||||||||||||| ||||||||| | | || | |||| ||||||| |
Sbjct: 500 tggccatacctggagacatacaccgaggatgttgcaaacgaactcatgagggaaatgcag 559
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgctc 219
|||||||||| | ||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 560 accaagcctgatttgatcattggcaactacagtgatggtaaccttgtggccactctgctt 619
Query: 220 gcgcacaagttgggagtcactcagtgtaccatcgctcatgcct 262
|| || || ||| | || || ||||| ||||| || |||||||
Sbjct: 620 gcccataaattgngtgttacccagtgcaccattgcccatgcct 662
>gb|AL511324.1|AL511324 AL511324 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY07L04u 3',
mRNA sequence
Length = 515
Score = 93.7 bits (47), Expect = 3e-018
Identities = 100/119 (84%)
Strand = Plus / Minus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||||||||||||||||||| ||||||||| | | || | |||| ||||||| |
Sbjct: 277 tggccatacctggagacatacaccgaggatgttgcaaacgaactcatgagggaaatgcag 218
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgct 218
|||||||||| | ||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 217 accaagcctgatttgatcattggcaactacagtgatggtaaccttgtggccactctgct 159
>gb|BQ465969.1|BQ465969 HT01D06T HT Hordeum vulgare subsp. vulgare cDNA clone HT01D06
5-PRIME, mRNA sequence
Length = 700
Score = 93.7 bits (47), Expect = 3e-018
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||||||||||||||||||| ||||||||| | | || | |||| ||||||| |
Sbjct: 560 tggccatacctggagacatacaccgaggatgttgcaaacgaactcatgagggaaatgcag 619
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgct 218
|||||||||| | ||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 620 accaagcctgatttgatcattggcaactacagtgatggtaaccttgtggccactctgct 678
>gb|CA029890.1|CA029890 HX05I01r HX Hordeum vulgare subsp. vulgare cDNA clone HX05I01
5-PRIME, mRNA sequence
Length = 609
Score = 91.7 bits (46), Expect = 1e-017
Identities = 59/62 (95%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 258 tgccttggagaaaaccaaataccccaactcggacatatacttggacaaattcgacagcca 317
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 24 tgccttggagaaaaccag-taccccaactcagacatatacttggacaaattcgacagcca 82
Query: 318 gt 319
||
Sbjct: 83 gt 84
>gb|CA031028.1|CA031028 HX08M24r HX Hordeum vulgare subsp. vulgare cDNA clone HX08M24
5-PRIME, mRNA sequence
Length = 616
Score = 91.7 bits (46), Expect = 1e-017
Identities = 59/62 (95%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 258 tgccttggagaaaaccaaataccccaactcggacatatacttggacaaattcgacagcca 317
||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 58 tgccttggagaaaac-aagtaccccaactcagacatatacttggacaaattcgacagcca 116
Query: 318 gt 319
||
Sbjct: 117 gt 118
>gb|AL506943.1|AL506943 AL506943 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04L06T 5',
mRNA sequence
Length = 700
Score = 77.8 bits (39), Expect = 2e-013
Identities = 107/130 (82%)
Strand = Plus / Plus
Query: 155 tgcnggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactc 214
||| |||||| |||||||| |||||||| |||||||| || || ||||| ||||| |
Sbjct: 190 tgcaggccaaccctgacctgatcattggaaactacagtgacggtaaccttgtcgcgtgtt 249
Query: 215 tgctcgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaacca 274
|| | || |||||||||||||| ||||| |||||||| |||||||| | ||||||||||
Sbjct: 250 tgttggcacacaagttgggagttactcattgtaccattgctcatgcgctcgagaaaacca 309
Query: 275 aataccccaa 284
| || |||||
Sbjct: 310 agtatcccaa 319
>gb|AL508345.1|AL508345 AL508345 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08H21V 5',
mRNA sequence
Length = 700
Score = 77.8 bits (39), Expect = 2e-013
Identities = 107/130 (82%)
Strand = Plus / Plus
Query: 155 tgcnggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactc 214
||| |||||| |||||||| |||||||| |||||||| || || ||||| ||||| |
Sbjct: 384 tgcaggccaaccctgacctgatcattggaaactacagtgacggtaaccttgtcgcgtgtt 443
Query: 215 tgctcgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaacca 274
|| | || |||||||||||||| ||||| |||||||| |||||||| | ||||||||||
Sbjct: 444 tgttggcacacaagttgggagttactcattgtaccattgctcatgcgctcgagaaaacca 503
Query: 275 aataccccaa 284
| || |||||
Sbjct: 504 agtatcccaa 513
>gb|AL508689.1|AL508689 AL508689 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09I05V 5',
mRNA sequence
Length = 693
Score = 77.8 bits (39), Expect = 2e-013
Identities = 107/130 (82%)
Strand = Plus / Plus
Query: 155 tgcnggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactc 214
||| |||||| |||||||| |||||||| |||||||| || || ||||| ||||| |
Sbjct: 283 tgcaggccaaccctgacctgatcattggaaactacagtgacggtaaccttgtcgcgtgtt 342
Query: 215 tgctcgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaacca 274
|| | || |||||||||||||| ||||| |||||||| |||||||| | ||||||||||
Sbjct: 343 tgttggcacacaagttgggagttactcattgtaccattgctcatgcgctcgagaaaacca 402
Query: 275 aataccccaa 284
| || |||||
Sbjct: 403 agtatcccaa 412
>gb|AL508802.1|AL508802 AL508802 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09N15V 5',
mRNA sequence
Length = 692
Score = 77.8 bits (39), Expect = 2e-013
Identities = 107/130 (82%)
Strand = Plus / Plus
Query: 155 tgcnggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactc 214
||| |||||| |||||||| |||||||| |||||||| || || ||||| ||||| |
Sbjct: 130 tgcaggccaaccctgacctgatcattggaaactacagtgacggtaaccttgtcgcgtgtt 189
Query: 215 tgctcgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaacca 274
|| | || |||||||||||||| ||||| |||||||| |||||||| | ||||||||||
Sbjct: 190 tgttggcacacaagttgggagttactcattgtaccattgctcatgcgctcgagaaaacca 249
Query: 275 aataccccaa 284
| || |||||
Sbjct: 250 agtatcccaa 259
>gb|BI949981.1|BI949981 HVSMEl0017H20f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0017H20f, mRNA sequence
Length = 476
Score = 77.8 bits (39), Expect = 2e-013
Identities = 107/130 (82%)
Strand = Plus / Plus
Query: 155 tgcnggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactc 214
||| |||||| |||||||| |||||||| |||||||| || || ||||| ||||| |
Sbjct: 125 tgcaggccaaccctgacctgatcattggaaactacagtgacggtaaccttgtcgcgtgtt 184
Query: 215 tgctcgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaacca 274
|| | || |||||||||||||| ||||| |||||||| |||||||| | ||||||||||
Sbjct: 185 tgttggcacacaagttgggagttactcattgtaccattgctcatgcgctcgagaaaacca 244
Query: 275 aataccccaa 284
| || |||||
Sbjct: 245 agtatcccaa 254
>gb|BI950121.1|BI950121 HVSMEl0018N18f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0018N18f, mRNA sequence
Length = 881
Score = 77.8 bits (39), Expect = 2e-013
Identities = 107/130 (82%)
Strand = Plus / Plus
Query: 155 tgcnggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactc 214
||| |||||| |||||||| |||||||| |||||||| || || ||||| ||||| |
Sbjct: 133 tgcaggccaaccctgacctgatcattggaaactacagtgacggtaaccttgtcgcgtgtt 192
Query: 215 tgctcgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaacca 274
|| | || |||||||||||||| ||||| |||||||| |||||||| | ||||||||||
Sbjct: 193 tgttggcacacaagttgggagttactcattgtaccattgctcatgcgctcgagaaaacca 252
Query: 275 aataccccaa 284
| || |||||
Sbjct: 253 agtatcccaa 262
>gb|BI951201.1|BI951201 HVSMEl0025A10f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0025A10f, mRNA sequence
Length = 570
Score = 77.8 bits (39), Expect = 2e-013
Identities = 107/130 (82%)
Strand = Plus / Plus
Query: 155 tgcnggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactc 214
||| |||||| |||||||| |||||||| |||||||| || || ||||| ||||| |
Sbjct: 178 tgcaggccaaccctgacctgatcattggaaactacagtgacggtaaccttgtcgcgtgtt 237
Query: 215 tgctcgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaacca 274
|| | || |||||||||||||| ||||| |||||||| |||||||| | ||||||||||
Sbjct: 238 tgttggcacacaagttgggagttactcattgtaccattgctcatgcgctcgagaaaacca 297
Query: 275 aataccccaa 284
| || |||||
Sbjct: 298 agtatcccaa 307
>gb|BE193575.3|BE193575 HVSMEh0081M04f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0081M04f, mRNA sequence
Length = 744
Score = 77.8 bits (39), Expect = 2e-013
Identities = 107/130 (82%)
Strand = Plus / Plus
Query: 155 tgcnggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactc 214
||| |||||| |||||||| |||||||| |||||||| || || ||||| ||||| |
Sbjct: 125 tgcaggccaaccctgacctgatcattggaaactacagtgacggtaaccttgtcgcgtgtt 184
Query: 215 tgctcgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaacca 274
|| | || |||||||||||||| ||||| |||||||| |||||||| | ||||||||||
Sbjct: 185 tgttggcacacaagttgggagttactcattgtaccattgctcatgcgctcgagaaaacca 244
Query: 275 aataccccaa 284
| || |||||
Sbjct: 245 agtatcccaa 254
>gb|BE194218.3|BE194218 HVSMEh0084K16f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0084K16f, mRNA sequence
Length = 632
Score = 77.8 bits (39), Expect = 2e-013
Identities = 107/130 (82%)
Strand = Plus / Plus
Query: 155 tgcnggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactc 214
||| |||||| |||||||| |||||||| |||||||| || || ||||| ||||| |
Sbjct: 125 tgcaggccaaccctgacctgatcattggaaactacagtgacggtaaccttgtcgcgtgtt 184
Query: 215 tgctcgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaacca 274
|| | || |||||||||||||| ||||| |||||||| |||||||| | ||||||||||
Sbjct: 185 tgttggcacacaagttgggagttactcattgtaccattgctcatgcgctcgagaaaacca 244
Query: 275 aataccccaa 284
| || |||||
Sbjct: 245 agtatcccaa 254
>gb|BG369770.2|BG369770 HVSMEi0025P06f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0025P06f, mRNA sequence
Length = 686
Score = 77.8 bits (39), Expect = 2e-013
Identities = 98/119 (82%)
Strand = Plus / Plus
Query: 100 tggccatacctggagacatacactgaggatgtttccannnaaataatgaaagaaatgcng 159
||||||||||||||||||||||| ||||||||| | | || | |||| ||||||| |
Sbjct: 538 tggccatacctggagacatacaccgaggatgttgcaaacgaactcatgagggaaatgcag 597
Query: 160 gccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactctgct 218
|||||||||| | |||||||| ||||||| ||||| ||||| || |||||||||||
Sbjct: 598 accaagcctgatttgatcattgggcactacagtgatggtaaccttgtggccactctgct 656
>gb|BG414980.2|BG414980 HVSMEk0004I12f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0004I12f, mRNA sequence
Length = 895
Score = 77.8 bits (39), Expect = 2e-013
Identities = 107/130 (82%)
Strand = Plus / Plus
Query: 155 tgcnggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactc 214
||| |||||| |||||||| |||||||| |||||||| || || ||||| ||||| |
Sbjct: 124 tgcaggccaaccctgacctgatcattggaaactacagtgacggtaaccttgtcgcgtgtt 183
Query: 215 tgctcgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaacca 274
|| | || |||||||||||||| ||||| |||||||| |||||||| | ||||||||||
Sbjct: 184 tgttggcacacaagttgggagttactcattgtaccattgctcatgcgctcgagaaaacca 243
Query: 275 aataccccaa 284
| || |||||
Sbjct: 244 agtatcccaa 253
>gb|BG415722.2|BG415722 HVSMEk0007J09f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0007J09f, mRNA sequence
Length = 651
Score = 77.8 bits (39), Expect = 2e-013
Identities = 107/130 (82%)
Strand = Plus / Plus
Query: 155 tgcnggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactc 214
||| |||||| |||||||| |||||||| |||||||| || || ||||| ||||| |
Sbjct: 125 tgcaggccaaccctgacctgatcattggaaactacagtgacggtaaccttgtcgcgtgtt 184
Query: 215 tgctcgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaacca 274
|| | || |||||||||||||| ||||| |||||||| |||||||| | ||||||||||
Sbjct: 185 tgttggcacacaagttgggagttactcattgtaccattgctcatgcgctcgagaaaacca 244
Query: 275 aataccccaa 284
| || |||||
Sbjct: 245 agtatcccaa 254
>gb|BQ459992.1|BQ459992 HA07I08r HA Hordeum vulgare subsp. vulgare cDNA clone HA07I08
5-PRIME, mRNA sequence
Length = 629
Score = 77.8 bits (39), Expect = 2e-013
Identities = 107/130 (82%)
Strand = Plus / Plus
Query: 155 tgcnggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactc 214
||| |||||| |||||||| |||||||| |||||||| || || ||||| ||||| |
Sbjct: 135 tgcaggccaaccctgacctgatcattggaaactacagtgacggtaaccttgtcgcgtgtt 194
Query: 215 tgctcgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaacca 274
|| | || |||||||||||||| ||||| |||||||| |||||||| | ||||||||||
Sbjct: 195 tgttggcacacaagttgggagttactcattgtaccattgctcatgcgctcgagaaaacca 254
Query: 275 aataccccaa 284
| || |||||
Sbjct: 255 agtatcccaa 264
>gb|BQ460709.1|BQ460709 HA06C13r HA Hordeum vulgare subsp. vulgare cDNA clone HA06C13
5-PRIME, mRNA sequence
Length = 609
Score = 77.8 bits (39), Expect = 2e-013
Identities = 107/130 (82%)
Strand = Plus / Plus
Query: 155 tgcnggccaagcctgaccttatcattggcaactacagcgatggcaacctagtcgccactc 214
||| |||||| |||||||| |||||||| |||||||| || || ||||| ||||| |
Sbjct: 136 tgcaggccaaccctgacctgatcattggaaactacagtgacggtaaccttgtcgcgtgtt 195
Query: 215 tgctcgcgcacaagttgggagtcactcagtgtaccatcgctcatgccttggagaaaacca 274
|| | || |||||||||||||| ||||| |||||||| |||||||| | ||||||||||
Sbjct: 196 tgttggcacacaagttgggagttactcattgtaccattgctcatgcgctcgagaaaacca 255
Query: 275 aataccccaa 284
| || |||||
Sbjct: 256 agtatcccaa 265
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,015
Number of Sequences: 312970
Number of extensions: 15015
Number of successful extensions: 3021
Number of sequences better than 0.5: 97
Number of HSP's better than 0.5 without gapping: 96
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2866
Number of HSP's gapped (non-prelim): 125
length of query: 319
length of database: 175,134,539
effective HSP length: 18
effective length of query: 301
effective length of database: 169,501,079
effective search space: 51019824779
effective search space used: 51019824779
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)