BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.068P15F020924.3.1
(625 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF623053.2|BF623053 HVSMEa0012M22f Hordeum vulgare seedl... 315 1e-084
gb|BF628008.2|BF628008 HVSMEb0002J11f Hordeum vulgare seedl... 283 3e-075
gb|BF621150.3|BF621150 HVSMEa0004J06f Hordeum vulgare seedl... 218 2e-055
gb|BI953372.1|BI953372 HVSMEm0012F09f Hordeum vulgare green... 212 1e-053
gb|AV923752.1|AV923752 AV923752 K. Sato unpublished cDNA li... 161 3e-038
gb|AV927277.1|AV927277 AV927277 K. Sato unpublished cDNA li... 161 3e-038
gb|BI957958.1|BI957958 HVSMEn0012H20f Hordeum vulgare rachi... 125 2e-027
gb|BQ763476.1|BQ763476 EBro02_SQ008_B17_R root, 3 week, hyd... 52 2e-005
gb|BF624841.2|BF624841 HVSMEa0017O06f Hordeum vulgare seedl... 38 0.33
gb|BE519513.1|BE519513 HV_CEb0016L11f Hordeum vulgare seedl... 38 0.33
gb|BI958269.1|BI958269 HVSMEn0014C15f Hordeum vulgare rachi... 38 0.33
gb|BG415387.2|BG415387 HVSMEk0006E15f Hordeum vulgare testa... 38 0.33
gb|BJ450896.1|BJ450896 BJ450896 K. Sato unpublished cDNA li... 38 0.33
gb|BJ453391.1|BJ453391 BJ453391 K. Sato unpublished cDNA li... 38 0.33
gb|BJ453575.1|BJ453575 BJ453575 K. Sato unpublished cDNA li... 38 0.33
gb|BJ458395.1|BJ458395 BJ458395 K. Sato unpublished cDNA li... 38 0.33
gb|BJ460937.1|BJ460937 BJ460937 K. Sato unpublished cDNA li... 38 0.33
gb|BI777917.2|BI777917 EBro07_SQ001_E10_R root, 3 week, red... 38 0.33
gb|CA000329.1|CA000329 HS08N19u HS Hordeum vulgare subsp. v... 38 0.33
gb|CA017974.1|CA017974 HV07A02r HV Hordeum vulgare subsp. v... 38 0.33
gb|CB859115.1|CB859115 HI09G08w HI Hordeum vulgare subsp. v... 38 0.33
gb|CB859381.1|CB859381 HI10E16w HI Hordeum vulgare subsp. v... 38 0.33
>gb|BF623053.2|BF623053 HVSMEa0012M22f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0012M22f, mRNA sequence
Length = 833
Score = 315 bits (159), Expect = 1e-084
Identities = 378/451 (83%)
Strand = Plus / Plus
Query: 142 gagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttccac 201
|||||| |||||||| || | || |||||||| ||||||||||| || || || ||||||
Sbjct: 119 gagaaggtgaagctgttcatgggggtgctggcgctgcagttcctgctcgccggcttccac 178
Query: 202 atcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacagg 261
|||||| | |||||||||||||||||||||||||| || |||| ||||| || ||| |
Sbjct: 179 atcgtcagccgggcggcgctcaacatgggcatcagcaagctcgtcttcatcgtctaccgc 238
Query: 262 aacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacagg 321
||| |||||||||||||| | ||||| || ||||||||||||||||||||||| ||||||
Sbjct: 239 aacgtcatctccctcgccctcctcgcccccttcgcctacttcctcgagaagaaggacagg 298
Query: 322 ccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtgtgggataact 381
||||| || ||||| || |||||| |||||||||| |||| ||||| ||||| ||
Sbjct: 299 ccgccgctgaccttgtcgctgctggcggagttcttcgtgctggcgctcatcgggatcacg 358
Query: 382 gcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacgcctctgcg 441
||||||||||| |||||||| ||||| ||||| |||||||| || |||||||| || |||
Sbjct: 359 gcgaaccaggggttctacctgctggggctgtaccacctgtcgccgacctacgcgtccgcg 418
Query: 442 atacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcaggctagagcag 501
|| ||||||| || || || ||||||||||| ||||||| || ||| |||| ||||||
Sbjct: 419 atccagaacatggtgccggccatcaccttcgtgctggccgcggtgctccggctggagcag 478
Query: 502 gtggacctgagcaggaggcatgggctggccaaggtggtgggcacggtggtgagcatcgga 561
||||||||| || || |||| ||| ||||||||||||||||||||||||||||| ||||
Sbjct: 479 gtggacctgggccggcggcacggggtggccaaggtggtgggcacggtggtgagcgtcggc 538
Query: 562 ggggccaccgtcataaccctgtacaagggcc 592
|| ||||| || || || || ||||||||||
Sbjct: 539 ggcgccacggtgatcacgctctacaagggcc 569
>gb|BF628008.2|BF628008 HVSMEb0002J11f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0002J11f, mRNA sequence
Length = 665
Score = 283 bits (143), Expect = 3e-075
Identities = 374/451 (82%)
Strand = Plus / Plus
Query: 142 gagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttccac 201
|||||| |||||||| || | || |||||||| ||||||||||| || || || ||||||
Sbjct: 39 gagaaggtgaagctgttcatgggggtgctggcgctgcagttcctgctcgccggcttccac 98
Query: 202 atcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacagg 261
|||||| | |||||||||||||||||||||||||| || |||| ||||| || ||| |
Sbjct: 99 atcgtcagccgggcggcgctcaacatgggcatcagcaagctcgtcttcatcgtataccgc 158
Query: 262 aacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacagg 321
||| |||||||||||||| | || || || ||||||||||||||||||||||| ||||||
Sbjct: 159 aacgtcatctccctcgccctcctagcccccttcgcctacttcctcgagaagaaggacagg 218
Query: 322 ccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtgtgggataact 381
||||| || ||||| || |||||| |||||||||| |||| ||||| ||||| ||
Sbjct: 219 ccgccgctgaccttgtcgctgctggcggagttcttcgtgctggcgctcatcgggatcacg 278
Query: 382 gcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacgcctctgcg 441
||||||||||| |||||||| ||||| ||||| |||||||| || |||||||| || |||
Sbjct: 279 gcgaaccaggggttctacctgctggggctgtaccacctgtcgccgacctacgcgtccgcg 338
Query: 442 atacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcaggctagagcag 501
|| ||||||| | || || ||||||||||| ||||||| | ||| |||| ||||||
Sbjct: 339 atccagaacatggagccggccatcaccttcgtgctggccgcagagctccggctggagcag 398
Query: 502 gtggacctgagcaggaggcatgggctggccaaggtggtgggcacggtggtgagcatcgga 561
||||||||| || || |||| ||| ||||||| ||||||||||||||||||||| ||||
Sbjct: 399 gtggacctgggccggcggcacggggtggccaatgtggtgggcacggtggtgagcgtcggc 458
Query: 562 ggggccaccgtcataaccctgtacaagggcc 592
|| ||||| || || || || ||||||||||
Sbjct: 459 ggcgccacggtgatcacgctctacaagggcc 489
>gb|BF621150.3|BF621150 HVSMEa0004J06f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0004J06f, mRNA sequence
Length = 735
Score = 218 bits (110), Expect = 2e-055
Identities = 260/310 (83%)
Strand = Plus / Plus
Query: 283 ctcgctccgttcgcctacttcctcgagaagaaagacaggccgccactcaccttctctttg 342
||||| || ||||||||||||||||||||||| ||||||||||| || ||||| || ||
Sbjct: 6 ctcgcccccttcgcctacttcctcgagaagaaggacaggccgccgctgaccttgtcgctg 65
Query: 343 ctggtggagttcttcctgctagcgctgtgtgggataactgcgaaccagggcttctacctc 402
|||| |||||||||| |||| ||||| ||||| || ||||||||||| ||||||||
Sbjct: 66 ctggcggagttcttcgtgctggcgctcatcgggatcacggcgaaccaggggttctacctg 125
Query: 403 ctgggcctgtatcacctgtcaccaacctacgcctctgcgatacagaacaccgtccccgcg 462
||||| ||||| |||||||| || |||||||| || ||||| ||||||| || || ||
Sbjct: 126 ctggggctgtaccacctgtcgccgacctacgcgtccgcgatccagaacatggtgccggcc 185
Query: 463 atcaccttcgtcatggccgctgtcctcaggctagagcaggtggacctgagcaggaggcat 522
||||||||||| ||||||| || ||| |||| ||||||||||||||| || || ||||
Sbjct: 186 atcaccttcgtgctggccgcggtgctccggctggagcaggtggacctgggccggcggcac 245
Query: 523 gggctggccaaggtggtgggcacggtggtgagcatcggaggggccaccgtcataaccctg 582
||| ||||||||||||||||||||||||||||| |||| || ||||| || || || ||
Sbjct: 246 ggggtggccaaggtggtgggcacggtggtgagcgtcggcggcgccacggtgatcacgctc 305
Query: 583 tacaagggcc 592
||||||||||
Sbjct: 306 tacaagggcc 315
>gb|BI953372.1|BI953372 HVSMEm0012F09f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0012F09f, mRNA sequence
Length = 831
Score = 212 bits (107), Expect = 1e-053
Identities = 272/327 (83%)
Strand = Plus / Plus
Query: 266 tcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacaggccgc 325
|||||||||||||| | ||||| || ||||||||||||||||||||||| ||||||||||
Sbjct: 11 tcatctccctcgccctcctcgcccccttcgcctacttcctcgagaagaaggacaggccgc 70
Query: 326 cactcaccttctctttgctggtggagttcttcctgctagcgctgtgtgggataactgcga 385
| || ||||| || |||||| |||||||||| |||| ||||| ||||| || ||||
Sbjct: 71 cgctgaccttgtcgctgctggcggagttcttcgtgctggcgctcatcgggatcacggcga 130
Query: 386 accagggcttctacctcctgggcctgtatcacctgtcaccaacctacgcctctgcgatac 445
||||||| |||||||| ||||| ||| |||||||| || |||||||| || ||||| |
Sbjct: 131 accaggggttctacctgctgggggtgtgccacctgtcgccgacctacgcgtccgcgatcc 190
Query: 446 agaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcaggctagagcaggtgg 505
|||||| || || || ||||||||||| ||||||| || ||| |||| ||||||||||
Sbjct: 191 agaacatggtgccggccatcaccttcgtgctggccgcggtgctccggctggagcaggtgg 250
Query: 506 acctgagcaggaggcatgggctggccaaggtggtgggcacggtggtgagcatcggagggg 565
||||| || || |||| ||| ||||||||||||||||||||||||||||| || | || |
Sbjct: 251 acctgggccggcggcacggggtggccaaggtggtgggcacggtggtgagcgtctgcggcg 310
Query: 566 ccaccgtcataaccctgtacaagggcc 592
|||| || || || || ||||||||||
Sbjct: 311 ccacagtgatcacgctctacaagggcc 337
>gb|AV923752.1|AV923752 AV923752 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1f03 5', mRNA sequence
Length = 525
Score = 161 bits (81), Expect = 3e-038
Identities = 159/185 (85%)
Strand = Plus / Plus
Query: 142 gagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttccac 201
|||||| |||||||| || | || |||||||| ||||||||||| || || || ||||||
Sbjct: 112 gagaaggtgaagctgttcatgggggtgctggcgctgcagttcctgctcgccggcttccac 171
Query: 202 atcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacagg 261
|||||| | |||||||||||||||||||||||||| || |||| ||||| || ||| |
Sbjct: 172 atcgtcagccgggcggcgctcaacatgggcatcagcaagctcgtcttcatcgtctaccgc 231
Query: 262 aacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacagg 321
||| |||||||||||||| | ||||| || ||||||||||||||||||||||| ||||||
Sbjct: 232 aacgtcatctccctcgccctcctcgcccccttcgcctacttcctcgagaagaaggacagg 291
Query: 322 ccgcc 326
|||||
Sbjct: 292 ccgcc 296
>gb|AV927277.1|AV927277 AV927277 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1f03 3', mRNA sequence
Length = 647
Score = 161 bits (81), Expect = 3e-038
Identities = 159/185 (85%)
Strand = Plus / Minus
Query: 142 gagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttccac 201
|||||| |||||||| || | || |||||||| ||||||||||| || || || ||||||
Sbjct: 598 gagaaggtgaagctgttcatgggggtgctggcgctgcagttcctgctcgccggcttccac 539
Query: 202 atcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacagg 261
|||||| | |||||||||||||||||||||||||| || |||| ||||| || ||| |
Sbjct: 538 atcgtcagccgggcggcgctcaacatgggcatcagcaagctcgtcttcatcgtctaccgc 479
Query: 262 aacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacagg 321
||| |||||||||||||| | ||||| || ||||||||||||||||||||||| ||||||
Sbjct: 478 aacgtcatctccctcgccctcctcgcccccttcgcctacttcctcgagaagaaggacagg 419
Query: 322 ccgcc 326
|||||
Sbjct: 418 ccgcc 414
>gb|BI957958.1|BI957958 HVSMEn0012H20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0012H20f, mRNA sequence
Length = 834
Score = 125 bits (63), Expect = 2e-027
Identities = 132/155 (85%)
Strand = Plus / Plus
Query: 266 tcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacaggccgc 325
|||||||||||||| | ||||| || ||||||||||||||||||||||| ||||||||||
Sbjct: 230 tcatctccctcgccctcctcgcccccttcgcctacttcctcgagaagaaggacaggccgc 289
Query: 326 cactcaccttctctttgctggtggagttcttcctgctagcgctgtgtgggataactgcga 385
| || ||||| || |||||| |||||||||| |||| ||||| ||||| || ||||
Sbjct: 290 cgctgaccttgtcgctgctggcggagttcttcgtgctggcgctcatcgggatcacggcga 349
Query: 386 accagggcttctacctcctgggcctgtatcacctg 420
||||||| |||||||| ||||| ||||| ||||||
Sbjct: 350 accaggggttctacctgctggggctgtaccacctg 384
Score = 40.1 bits (20), Expect = 0.085
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 142 gagaagctgaagctgctcgtcggagtgctggccctgcagttcct 185
|||||| |||||||| || | || |||||||| |||||||||||
Sbjct: 106 gagaaggtgaagctgttcatgggggtgctggcgctgcagttcct 149
>gb|BQ763476.1|BQ763476 EBro02_SQ008_B17_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_B17 5', mRNA sequence
Length = 536
Score = 52.0 bits (26), Expect = 2e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 385 aaccagggcttctacctcctgggcct 410
||||||||||||||||||||||||||
Sbjct: 348 aaccagggcttctacctcctgggcct 373
Score = 50.1 bits (25), Expect = 9e-005
Identities = 88/109 (80%)
Strand = Plus / Plus
Query: 216 ggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacaggaacctcatctccct 275
|||||||||||||||||||||| || | || ||| |||||| | ||| ||||| | ||
Sbjct: 179 ggcgctcaacatgggcatcagcaagctggtcttccccgtgtaccgcaacatcatcgcgct 238
Query: 276 cgccttgctcgctccgttcgcctacttcctcgagaagaaagacaggccg 324
| | | |||| || ||||||||||||||||||||||| ||| |||||
Sbjct: 239 cttcctcctcgtccccttcgcctacttcctcgagaagaaggaccggccg 287
>gb|BF624841.2|BF624841 HVSMEa0017O06f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0017O06f, mRNA sequence
Length = 817
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 112 agatcagctgcagcggcga 130
|||||||||||||||||||
Sbjct: 284 agatcagctgcagcggcga 302
>gb|BE519513.1|BE519513 HV_CEb0016L11f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0016L11f, mRNA sequence
Length = 704
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 342 gctggtggagttcttcctg 360
|||||||||||||||||||
Sbjct: 374 gctggtggagttcttcctg 392
>gb|BI958269.1|BI958269 HVSMEn0014C15f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014C15f, mRNA sequence
Length = 664
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 80 agctagctagctagcagct 98
|||||||||||||||||||
Sbjct: 619 agctagctagctagcagct 637
>gb|BG415387.2|BG415387 HVSMEk0006E15f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0006E15f, mRNA sequence
Length = 479
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 80 agctagctagctagcagct 98
|||||||||||||||||||
Sbjct: 230 agctagctagctagcagct 248
>gb|BJ450896.1|BJ450896 BJ450896 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak31n06 5', mRNA sequence
Length = 362
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 342 gctggtggagttcttcctg 360
|||||||||||||||||||
Sbjct: 21 gctggtggagttcttcctg 39
>gb|BJ453391.1|BJ453391 BJ453391 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42n15 5', mRNA sequence
Length = 583
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 342 gctggtggagttcttcctg 360
|||||||||||||||||||
Sbjct: 38 gctggtggagttcttcctg 56
>gb|BJ453575.1|BJ453575 BJ453575 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak43k14 5', mRNA sequence
Length = 552
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 342 gctggtggagttcttcctg 360
|||||||||||||||||||
Sbjct: 49 gctggtggagttcttcctg 67
>gb|BJ458395.1|BJ458395 BJ458395 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak31n06 3', mRNA sequence
Length = 506
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 342 gctggtggagttcttcctg 360
|||||||||||||||||||
Sbjct: 469 gctggtggagttcttcctg 451
>gb|BJ460937.1|BJ460937 BJ460937 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak42n15 3', mRNA sequence
Length = 505
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 342 gctggtggagttcttcctg 360
|||||||||||||||||||
Sbjct: 468 gctggtggagttcttcctg 450
>gb|BI777917.2|BI777917 EBro07_SQ001_E10_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ001_E10 5', mRNA sequence
Length = 455
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 342 gctggtggagttcttcctg 360
|||||||||||||||||||
Sbjct: 344 gctggtggagttcttcctg 362
>gb|CA000329.1|CA000329 HS08N19u HS Hordeum vulgare subsp. vulgare cDNA clone HS08N19
3-PRIME, mRNA sequence
Length = 543
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 80 agctagctagctagcagct 98
|||||||||||||||||||
Sbjct: 223 agctagctagctagcagct 205
>gb|CA017974.1|CA017974 HV07A02r HV Hordeum vulgare subsp. vulgare cDNA clone HV07A02
5-PRIME, mRNA sequence
Length = 453
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 342 gctggtggagttcttcctg 360
|||||||||||||||||||
Sbjct: 10 gctggtggagttcttcctg 28
>gb|CB859115.1|CB859115 HI09G08w HI Hordeum vulgare subsp. vulgare cDNA clone HI09G08
3-PRIME, mRNA sequence
Length = 446
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 80 agctagctagctagcagct 98
|||||||||||||||||||
Sbjct: 230 agctagctagctagcagct 212
>gb|CB859381.1|CB859381 HI10E16w HI Hordeum vulgare subsp. vulgare cDNA clone HI10E16
3-PRIME, mRNA sequence
Length = 523
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 80 agctagctagctagcagct 98
|||||||||||||||||||
Sbjct: 230 agctagctagctagcagct 212
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 84,271
Number of Sequences: 312970
Number of extensions: 84271
Number of successful extensions: 27560
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27497
Number of HSP's gapped (non-prelim): 57
length of query: 625
length of database: 175,134,539
effective HSP length: 19
effective length of query: 606
effective length of database: 169,188,109
effective search space: 102527994054
effective search space used: 102527994054
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)