BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.065K11F020919.3.1
(383 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI957217.1|BI957217 HVSMEn0008D06f Hordeum vulgare rachi... 98 3e-019
gb|CX662629.1|CX662629 EST 455 Expressed sequences from Bar... 98 3e-019
emb|Y09233.1|HVCHS2 H.vulgare mRNA for homoeriodictyol/erio... 90 6e-017
gb|BJ448784.1|BJ448784 BJ448784 K. Sato unpublished cDNA li... 84 4e-015
gb|BJ448811.1|BJ448811 BJ448811 K. Sato unpublished cDNA li... 84 4e-015
gb|BJ459861.1|BJ459861 BJ459861 K. Sato unpublished cDNA li... 84 4e-015
gb|BJ461920.1|BJ461920 BJ461920 K. Sato unpublished cDNA li... 84 4e-015
gb|BJ461948.1|BJ461948 BJ461948 K. Sato unpublished cDNA li... 84 4e-015
gb|BJ448866.1|BJ448866 BJ448866 K. Sato unpublished cDNA li... 78 2e-013
gb|BJ462004.1|BJ462004 BJ462004 K. Sato unpublished cDNA li... 78 2e-013
gb|AV909853.1|AV909853 AV909853 K. Sato unpublished cDNA li... 62 1e-008
gb|AV910927.1|AV910927 AV910927 K. Sato unpublished cDNA li... 60 6e-008
gb|BJ458356.1|BJ458356 BJ458356 K. Sato unpublished cDNA li... 60 6e-008
gb|BJ458471.1|BJ458471 BJ458471 K. Sato unpublished cDNA li... 60 6e-008
gb|BJ458128.1|BJ458128 BJ458128 K. Sato unpublished cDNA li... 50 5e-005
gb|AV911953.1|AV911953 AV911953 K. Sato unpublished cDNA li... 44 0.003
gb|AV909045.1|AV909045 AV909045 K. Sato unpublished cDNA li... 38 0.20
gb|BJ450964.1|BJ450964 BJ450964 K. Sato unpublished cDNA li... 38 0.20
>gb|BI957217.1|BI957217 HVSMEn0008D06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0008D06f, mRNA sequence
Length = 621
Score = 97.6 bits (49), Expect = 3e-019
Identities = 67/73 (91%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
||||||||||| |||||||| |||||||| |||||||| || ||||||||||| ||||||
Sbjct: 437 gactggggcgttctcttcggcttcggccccggcctcacggtggagaccgtcgtcctccac 378
Query: 61 agcgtccccatca 73
|||||||||||||
Sbjct: 377 agcgtccccatca 365
>gb|CX662629.1|CX662629 EST 455 Expressed sequences from Barley Hordeum vulgare subsp.
vulgare cDNA clone P455 5', mRNA sequence
Length = 316
Score = 97.6 bits (49), Expect = 3e-019
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
||||||||||| |||||||| |||||||| |||||||| || ||||||||||| ||||||
Sbjct: 173 gactggggcgttctcttcggcttcggccccggcctcacggtggagaccgtcgtcctccac 232
Query: 61 agcgtccccatca 73
|||||||||||||
Sbjct: 233 agcgtccccatca 245
>emb|Y09233.1|HVCHS2 H.vulgare mRNA for homoeriodictyol/eriodictyol chalcone synthase
Length = 1493
Score = 89.7 bits (45), Expect = 6e-017
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||| ||||||||||| |||||||| ||||||||||||||||| |||| ||||||
Sbjct: 1133 gactggggtgtcctcttcggcttcggccctggcctcaccgtcgagacactcgtcctccac 1192
Query: 61 agcgtcccc 69
|||||||||
Sbjct: 1193 agcgtcccc 1201
>gb|BJ448784.1|BJ448784 BJ448784 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak21d17 5', mRNA sequence
Length = 650
Score = 83.8 bits (42), Expect = 4e-015
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
||||||||||| |||||||| |||||||| ||||| ||||| ||||| ||||| |||||
Sbjct: 396 gactggggcgttctcttcggcttcggccccggccttaccgtggagacggtcgttctccat 455
Query: 61 agcgtccccatcac 74
||||||||||||||
Sbjct: 456 agcgtccccatcac 469
>gb|BJ448811.1|BJ448811 BJ448811 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak21f08 5', mRNA sequence
Length = 580
Score = 83.8 bits (42), Expect = 4e-015
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
||||||||||| |||||||| |||||||| ||||| ||||| ||||| ||||| |||||
Sbjct: 396 gactggggcgttctcttcggcttcggccccggccttaccgtggagacggtcgttctccat 455
Query: 61 agcgtccccatcac 74
||||||||||||||
Sbjct: 456 agcgtccccatcac 469
>gb|BJ459861.1|BJ459861 BJ459861 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak38i19 3', mRNA sequence
Length = 288
Score = 83.8 bits (42), Expect = 4e-015
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
||||||||||| |||||||| |||||||| ||||| ||||| ||||| ||||| |||||
Sbjct: 273 gactggggcgttctcttcggcttcggccccggccttaccgtggagacggtcgttctccat 214
Query: 61 agcgtccccatcac 74
||||||||||||||
Sbjct: 213 agcgtccccatcac 200
>gb|BJ461920.1|BJ461920 BJ461920 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak21d17 3', mRNA sequence
Length = 600
Score = 83.8 bits (42), Expect = 4e-015
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
||||||||||| |||||||| |||||||| ||||| ||||| ||||| ||||| |||||
Sbjct: 202 gactggggcgttctcttcggcttcggccccggccttaccgtggagacggtcgttctccat 143
Query: 61 agcgtccccatcac 74
||||||||||||||
Sbjct: 142 agcgtccccatcac 129
>gb|BJ461948.1|BJ461948 BJ461948 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak21f08 3', mRNA sequence
Length = 600
Score = 83.8 bits (42), Expect = 4e-015
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
||||||||||| |||||||| |||||||| ||||| ||||| ||||| ||||| |||||
Sbjct: 204 gactggggcgttctcttcggcttcggccccggccttaccgtggagacggtcgttctccat 145
Query: 61 agcgtccccatcac 74
||||||||||||||
Sbjct: 144 agcgtccccatcac 131
>gb|BJ448866.1|BJ448866 BJ448866 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak21i07 5', mRNA sequence
Length = 452
Score = 77.8 bits (39), Expect = 2e-013
Identities = 54/59 (91%)
Strand = Plus / Plus
Query: 15 cttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccacagcgtccccatca 73
|||||| |||||||| |||||||| || ||||||||||| |||||||||||||||||||
Sbjct: 13 cttcggcttcggccccggcctcacggtggagaccgtcgtcctccacagcgtccccatca 71
>gb|BJ462004.1|BJ462004 BJ462004 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak21i07 3', mRNA sequence
Length = 407
Score = 77.8 bits (39), Expect = 2e-013
Identities = 54/59 (91%)
Strand = Plus / Minus
Query: 15 cttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccacagcgtccccatca 73
|||||| |||||||| |||||||| || ||||||||||| |||||||||||||||||||
Sbjct: 406 cttcggcttcggccccggcctcacggtggagaccgtcgtcctccacagcgtccccatca 348
>gb|AV909853.1|AV909853 AV909853 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak2d13 5', mRNA sequence
Length = 391
Score = 61.9 bits (31), Expect = 1e-008
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||| || || ||||| || || || ||||||||||||||||| ||||| |||||
Sbjct: 195 gactggggagttctattcggctttggtcccggcctcaccgtcgagacggtcgtnctccat 254
Query: 61 agcgtccccatcac 74
||||||||| ||||
Sbjct: 255 agcgtccccgtcac 268
>gb|AV910927.1|AV910927 AV910927 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11g05 3', mRNA sequence
Length = 629
Score = 60.0 bits (30), Expect = 6e-008
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||| || || ||||| || || || ||||||||||||||||| ||||| |||||
Sbjct: 337 gactggggagttctattcggctttggtcccggcctcaccgtcgagacggtcgtcctccat 278
Query: 61 agcgtccccatcac 74
||||||||| ||||
Sbjct: 277 agcgtccccgtcac 264
>gb|BJ458356.1|BJ458356 BJ458356 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak31l01 3', mRNA sequence
Length = 294
Score = 60.0 bits (30), Expect = 6e-008
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||| || || ||||| || || || ||||||||||||||||| ||||| |||||
Sbjct: 239 gactggggagttctattcggctttggtcccggcctcaccgtcgagacggtcgtcctccat 180
Query: 61 agcgtccccatcac 74
||||||||| ||||
Sbjct: 179 agcgtccccgtcac 166
>gb|BJ458471.1|BJ458471 BJ458471 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak32c10 3', mRNA sequence
Length = 752
Score = 60.0 bits (30), Expect = 6e-008
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||| || || ||||| || || || ||||||||||||||||| ||||| |||||
Sbjct: 346 gactggggagttctattcggctttggtcccggcctcaccgtcgagacggtcgtcctccat 287
Query: 61 agcgtccccatcac 74
||||||||| ||||
Sbjct: 286 agcgtccccgtcac 273
>gb|BJ458128.1|BJ458128 BJ458128 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak30m15 3', mRNA sequence
Length = 264
Score = 50.1 bits (25), Expect = 5e-005
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||| || || ||||| || || || ||||||||||||||||| ||||| |||||
Sbjct: 65 gactggggagttctattcggctttggtcccggcctcaccgtcgagacggtcgtcctccat 6
Query: 61 agcgt 65
|||||
Sbjct: 5 agcgt 1
>gb|AV911953.1|AV911953 AV911953 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak2d13 3', mRNA sequence
Length = 498
Score = 44.1 bits (22), Expect = 0.003
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 31 ggcctcaccgtcgagaccgtcgtgctccacagcgtccccatcac 74
||||||||||| || || ||||| ||||| ||||||||| ||||
Sbjct: 292 ggcctcaccgtnganacggtcgtcctccatagcgtccccgtcac 249
>gb|AV909045.1|AV909045 AV909045 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11g05 5', mRNA sequence
Length = 645
Score = 38.2 bits (19), Expect = 0.20
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagac 47
|||||||| || || ||||| || || || |||||||||||||||||
Sbjct: 598 gactggggagttctattcggctttggtcccggcctcaccgtcgagac 644
>gb|BJ450964.1|BJ450964 BJ450964 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak32c10 5', mRNA sequence
Length = 638
Score = 38.2 bits (19), Expect = 0.20
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagac 47
|||||||| || || ||||| || || || |||||||||||||||||
Sbjct: 591 gactggggagttctattcggctttggtcccggcctcaccgtcgagac 637
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 36,520
Number of Sequences: 312970
Number of extensions: 36520
Number of successful extensions: 8957
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8939
Number of HSP's gapped (non-prelim): 18
length of query: 383
length of database: 175,134,539
effective HSP length: 18
effective length of query: 365
effective length of database: 169,501,079
effective search space: 61867893835
effective search space used: 61867893835
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)