BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QBTB.064D08F020918.3.1
         (559 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BU970342.1|BU970342  HB14F18r BC Hordeum vulgare subsp. v...    44   0.005
gb|BQ758198.1|BQ758198  EBma01_SQ003_N19_R maternal, 4 DPA, ...    36   1.2  
gb|BF255044.1|BF255044  HVSMEf0005M13f Hordeum vulgare seedl...    34   4.7  
gb|BI958745.1|BI958745  HVSMEn0016G24f Hordeum vulgare rachi...    34   4.7  
gb|BU985865.1|BU985865  HF08N19r HF Hordeum vulgare subsp. v...    34   4.7  
gb|CA031089.1|CA031089  HX08P18r HX Hordeum vulgare subsp. v...    34   4.7  

>gb|BU970342.1|BU970342 HB14F18r BC Hordeum vulgare subsp. vulgare cDNA clone HB14F18
           5-PRIME, mRNA sequence
          Length = 632

 Score = 44.1 bits (22), Expect = 0.005
 Identities = 43/50 (86%)
 Strand = Plus / Plus

                                                             
Query: 327 acatgggacgaaaaactggcgaactattgcatgtgctatacctggccgaa 376
           |||||||  ||||||||||| |||| | |||  |||||||||||||||||
Sbjct: 468 acatgggctgaaaaactggcaaactgtcgcacatgctatacctggccgaa 517



>gb|BQ758198.1|BQ758198 EBma01_SQ003_N19_R maternal, 4 DPA, no treatment, cv Optic, EBma01
           Hordeum vulgare subsp. vulgare cDNA clone
           EBma01_SQ003_N19 5', mRNA sequence
          Length = 110

 Score = 36.2 bits (18), Expect = 1.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 126 agatgaggttgctgaaga 143
           ||||||||||||||||||
Sbjct: 63  agatgaggttgctgaaga 46



>gb|BF255044.1|BF255044 HVSMEf0005M13f Hordeum vulgare seedling root EST library HVcDNA0007
           (Etiolated and unstressed) Hordeum vulgare subsp.
           vulgare cDNA clone HVSMEf0005M13f, mRNA sequence
          Length = 642

 Score = 34.2 bits (17), Expect = 4.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 528 gacaaatgatgcactca 544
           |||||||||||||||||
Sbjct: 284 gacaaatgatgcactca 300



>gb|BI958745.1|BI958745 HVSMEn0016G24f Hordeum vulgare rachis EST library HVcDNA0015
           (normal) Hordeum vulgare subsp. vulgare cDNA clone
           HVSMEn0016G24f, mRNA sequence
          Length = 670

 Score = 34.2 bits (17), Expect = 4.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 528 gacaaatgatgcactca 544
           |||||||||||||||||
Sbjct: 457 gacaaatgatgcactca 473



>gb|BU985865.1|BU985865 HF08N19r HF Hordeum vulgare subsp. vulgare cDNA clone HF08N19
           5-PRIME, mRNA sequence
          Length = 617

 Score = 34.2 bits (17), Expect = 4.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 528 gacaaatgatgcactca 544
           |||||||||||||||||
Sbjct: 313 gacaaatgatgcactca 329



>gb|CA031089.1|CA031089 HX08P18r HX Hordeum vulgare subsp. vulgare cDNA clone HX08P18
          5-PRIME, mRNA sequence
          Length = 603

 Score = 34.2 bits (17), Expect = 4.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                           
Query: 44 gagcagacatggagcag 60
          |||||||||||||||||
Sbjct: 22 gagcagacatggagcag 38



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  May 2, 2006  2:38 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 43,775
Number of Sequences: 312970
Number of extensions: 43775
Number of successful extensions: 11646
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11639
Number of HSP's gapped (non-prelim): 7
length of query: 559
length of database: 175,134,539
effective HSP length: 19
effective length of query: 540
effective length of database: 169,188,109
effective search space: 91361578860
effective search space used: 91361578860
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)