BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.063F13F020916.3.1
(668 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF623739.2|BF623739 HVSMEa0005E23f Hordeum vulgare seedl... 38 0.36
gb|BG344026.1|BG344026 HVSMEg0007G24f Hordeum vulgare pre-a... 38 0.36
gb|BE455709.3|BE455709 HVSMEg0019C14f Hordeum vulgare pre-a... 38 0.36
gb|AV909091.1|AV909091 AV909091 K. Sato unpublished cDNA li... 38 0.36
gb|AV916797.1|AV916797 AV916797 K. Sato unpublished cDNA li... 38 0.36
gb|BJ463435.1|BJ463435 BJ463435 K. Sato unpublished cDNA li... 38 0.36
gb|BJ471937.1|BJ471937 BJ471937 K. Sato unpublished cDNA li... 38 0.36
gb|BJ472602.1|BJ472602 BJ472602 K. Sato unpublished cDNA li... 38 0.36
gb|BQ464807.1|BQ464807 HU01K04T HU Hordeum vulgare subsp. v... 38 0.36
gb|CK124606.1|CK124606 BES1824109m04 BES1824 Hordeum vulgar... 38 0.36
>gb|BF623739.2|BF623739 HVSMEa0005E23f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0005E23f, mRNA sequence
Length = 497
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 118 tagttgtgcgtcgccgccg 136
|||||||||||||||||||
Sbjct: 20 tagttgtgcgtcgccgccg 38
>gb|BG344026.1|BG344026 HVSMEg0007G24f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0007G24f, mRNA sequence
Length = 797
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 33 tggccatatcatcctccac 51
|||||||||||||||||||
Sbjct: 451 tggccatatcatcctccac 433
>gb|BE455709.3|BE455709 HVSMEg0019C14f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0019C14f, mRNA sequence
Length = 820
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 33 tggccatatcatcctccac 51
|||||||||||||||||||
Sbjct: 94 tggccatatcatcctccac 76
>gb|AV909091.1|AV909091 AV909091 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11j03 5', mRNA sequence
Length = 610
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 33 tggccatatcatcctccac 51
|||||||||||||||||||
Sbjct: 142 tggccatatcatcctccac 124
>gb|AV916797.1|AV916797 AV916797 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19k22 5', mRNA sequence
Length = 578
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 33 tggccatatcatcctccac 51
|||||||||||||||||||
Sbjct: 190 tggccatatcatcctccac 172
>gb|BJ463435.1|BJ463435 BJ463435 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27k23 5', mRNA sequence
Length = 575
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 33 tggccatatcatcctccac 51
|||||||||||||||||||
Sbjct: 98 tggccatatcatcctccac 80
>gb|BJ471937.1|BJ471937 BJ471937 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal28j21 5', mRNA sequence
Length = 487
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 33 tggccatatcatcctccac 51
|||||||||||||||||||
Sbjct: 439 tggccatatcatcctccac 421
>gb|BJ472602.1|BJ472602 BJ472602 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal35j06 5', mRNA sequence
Length = 527
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 33 tggccatatcatcctccac 51
|||||||||||||||||||
Sbjct: 453 tggccatatcatcctccac 435
>gb|BQ464807.1|BQ464807 HU01K04T HU Hordeum vulgare subsp. vulgare cDNA clone HU01K04
5-PRIME, mRNA sequence
Length = 466
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 33 tggccatatcatcctccac 51
|||||||||||||||||||
Sbjct: 271 tggccatatcatcctccac 253
>gb|CK124606.1|CK124606 BES1824109m04 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010M049 5-PRIME, mRNA sequence
Length = 808
Score = 38.2 bits (19), Expect = 0.36
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 33 tggccatatcatcctccac 51
|||||||||||||||||||
Sbjct: 154 tggccatatcatcctccac 136
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 111,294
Number of Sequences: 312970
Number of extensions: 111294
Number of successful extensions: 39058
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39040
Number of HSP's gapped (non-prelim): 18
length of query: 668
length of database: 175,134,539
effective HSP length: 19
effective length of query: 649
effective length of database: 169,188,109
effective search space: 109803082741
effective search space used: 109803082741
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)