BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL6b07.xg.2.1
(644 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ464898.1|BQ464898 HU02B07r HU Hordeum vulgare subsp. v... 155 2e-036
gb|AV836884.1|AV836884 AV836884 K. Sato unpublished cDNA li... 151 3e-035
gb|BQ466575.1|BQ466575 HT02O23r HT Hordeum vulgare subsp. v... 137 5e-031
gb|AV929540.1|AV929540 AV929540 K. Sato unpublished cDNA li... 86 2e-015
gb|AV929541.1|AV929541 AV929541 K. Sato unpublished cDNA li... 86 2e-015
gb|BI950071.1|BI950071 HVSMEl0018F12f Hordeum vulgare spike... 70 1e-010
gb|BM370694.2|BM370694 EBro04_SQ001_N16_R root, 3 week, sal... 70 1e-010
gb|AV837108.1|AV837108 AV837108 K. Sato unpublished cDNA li... 68 4e-010
gb|BG300180.2|BG300180 HVSMEb0010M14f Hordeum vulgare seedl... 68 4e-010
gb|AV837001.1|AV837001 AV837001 K. Sato unpublished cDNA li... 66 2e-009
gb|BF255625.2|BF255625 HVSMEf0007F20f Hordeum vulgare seedl... 64 6e-009
gb|BQ462615.1|BQ462615 HI01H17T HI Hordeum vulgare subsp. v... 64 6e-009
gb|BQ660205.1|BQ660205 HI01H17w HI Hordeum vulgare subsp. v... 64 6e-009
gb|BU976968.1|BU976968 HA10J24r HA Hordeum vulgare subsp. v... 64 6e-009
gb|CA020283.1|CA020283 HV14N17r HV Hordeum vulgare subsp. v... 64 6e-009
gb|BF263242.2|BF263242 HV_CEa0006D16f Hordeum vulgare seedl... 62 2e-008
gb|CB875060.1|CB875060 HX07C18w HX Hordeum vulgare subsp. v... 56 1e-006
gb|CB875249.1|CB875249 HX07L15w HX Hordeum vulgare subsp. v... 56 1e-006
gb|AV928198.1|AV928198 AV928198 K. Sato unpublished cDNA li... 54 6e-006
gb|BQ661898.1|BQ661898 HP01M02w HP Hordeum vulgare subsp. v... 54 6e-006
gb|BQ661900.1|BQ661900 HP01M04w HP Hordeum vulgare subsp. v... 54 6e-006
gb|BM370983.2|BM370983 EBro04_SQ003_C04_R root, 3 week, sal... 54 6e-006
gb|CB879472.1|CB879472 HP02G07w HP Hordeum vulgare subsp. v... 54 6e-006
gb|AV833891.1|AV833891 AV833891 K. Sato unpublished cDNA li... 52 2e-005
gb|CA023792.1|CA023792 HZ47G18r HZ Hordeum vulgare subsp. v... 52 2e-005
gb|CB877154.1|CB877154 HP03L21T HP Hordeum vulgare subsp. v... 52 2e-005
gb|BU983256.1|BU983256 HA29B10r HA Hordeum vulgare subsp. v... 50 9e-005
gb|BU995787.1|BU995787 HM11F21r HM Hordeum vulgare subsp. v... 50 9e-005
gb|BU996535.1|BU996535 HM13O21r HM Hordeum vulgare subsp. v... 50 9e-005
gb|CB881943.1|CB881943 HM11F21w HM Hordeum vulgare subsp. v... 50 9e-005
gb|BF621298.2|BF621298 HVSMEa0006G11f Hordeum vulgare seedl... 48 4e-004
gb|BF623192.2|BF623192 HVSMEa0015C06f Hordeum vulgare seedl... 48 4e-004
gb|BF256735.2|BF256735 HVSMEf0010N17f Hordeum vulgare seedl... 48 4e-004
gb|BE558792.2|BE558792 HV_CEb0020G08f Hordeum vulgare seedl... 48 4e-004
gb|BQ762476.1|BQ762476 EBro01_SQ005_P23 _R root, 3 week, hy... 48 4e-004
gb|BQ765808.1|BQ765808 EBro03_SQ008_A09_R root, 3 week, wat... 48 4e-004
gb|BU980874.1|BU980874 HA21P04r HA Hordeum vulgare subsp. v... 48 4e-004
gb|CA023853.1|CA023853 HZ47J17r HZ Hordeum vulgare subsp. v... 48 4e-004
gb|CB878585.1|CB878585 HP09B03T HP Hordeum vulgare subsp. v... 48 4e-004
gb|BQ759758.1|BQ759758 EBpi05_SQ004_F10_R pistil, 8 DPA, no... 46 0.001
gb|BU995308.1|BU995308 HM09N12r HM Hordeum vulgare subsp. v... 46 0.001
gb|CA011468.1|CA011468 HT05J08u HT Hordeum vulgare subsp. v... 46 0.001
gb|AV833971.1|AV833971 AV833971 K. Sato unpublished cDNA li... 44 0.006
gb|AV915770.1|AV915770 AV915770 K. Sato unpublished cDNA li... 44 0.006
gb|AV930414.1|AV930414 AV930414 K. Sato unpublished cDNA li... 44 0.006
gb|BM443542.2|BM443542 EBro02_SQ005_J14_R root, 3 week, hyd... 44 0.006
gb|BQ768749.1|BQ768749 EBro08_SQ012_G15_R root, 3 week, dro... 44 0.006
gb|CA023440.1|CA023440 HZ46E02r HZ Hordeum vulgare subsp. v... 44 0.006
gb|BE215906.2|BE215906 HV_CEb0008M23f Hordeum vulgare seedl... 42 0.022
gb|BF265817.3|BF265817 HV_CEa0013G16f Hordeum vulgare seedl... 42 0.022
gb|BQ470048.1|BQ470048 HX01J23T HX Hordeum vulgare subsp. v... 42 0.022
gb|BU967708.1|BU967708 HB05C13r BC Hordeum vulgare subsp. v... 42 0.022
gb|BU994831.1|BU994831 HM08F14r HM Hordeum vulgare subsp. v... 42 0.022
gb|BU995432.1|BU995432 HM10D21r HM Hordeum vulgare subsp. v... 42 0.022
gb|CB880958.1|CB880958 HM08F14w HM Hordeum vulgare subsp. v... 42 0.022
gb|CB881559.1|CB881559 HM10C22w HM Hordeum vulgare subsp. v... 42 0.022
emb|AJ234733.1|HVU234733 Hordeum vulgare genomic DNA fragme... 42 0.022
gb|AL508203.1|AL508203 AL508203 Hordeum vulgare Barke devel... 40 0.087
gb|AV836770.1|AV836770 AV836770 K. Sato unpublished cDNA li... 40 0.087
gb|BI951471.1|BI951471 HVSMEm0001A20f Hordeum vulgare green... 40 0.087
gb|BF263464.2|BF263464 HV_CEa0006N01f Hordeum vulgare seedl... 40 0.087
gb|BE216561.2|BE216561 HV_CEb0010N04f Hordeum vulgare seedl... 40 0.087
gb|BI960054.1|BI960054 HVSMEn0023A08f Hordeum vulgare rachi... 40 0.087
gb|BE194495.3|BE194495 HVSMEh0085M10f Hordeum vulgare 5-45 ... 40 0.087
gb|BG415671.2|BG415671 HVSMEk0007G10f Hordeum vulgare testa... 40 0.087
gb|BJ448740.1|BJ448740 BJ448740 K. Sato unpublished cDNA li... 40 0.087
gb|BJ449028.1|BJ449028 BJ449028 K. Sato unpublished cDNA li... 40 0.087
gb|BJ456484.1|BJ456484 BJ456484 K. Sato unpublished cDNA li... 40 0.087
gb|BQ763144.1|BQ763144 EBro02_SQ007_I08_R root, 3 week, hyd... 38 0.34
gb|BQ763571.1|BQ763571 EBro02_SQ008_F22_R root, 3 week, hyd... 38 0.34
gb|BQ764108.1|BQ764108 EBro03_SQ006_E12_R root, 3 week, wat... 38 0.34
gb|CA014046.1|CA014046 HT10D18r HT Hordeum vulgare subsp. v... 38 0.34
gb|CD663202.1|CD663202 UCRHV18_04ch03_b1 Drought-stressed D... 38 0.34
gb|AU252274.1|AU252274 AU252274 salt-stressed barley root c... 38 0.34
gb|AU252281.1|AU252281 AU252281 salt-stressed barley root c... 38 0.34
>gb|BQ464898.1|BQ464898 HU02B07r HU Hordeum vulgare subsp. vulgare cDNA clone HU02B07
5-PRIME, mRNA sequence
Length = 613
Score = 155 bits (78), Expect = 2e-036
Identities = 201/242 (83%)
Strand = Plus / Plus
Query: 95 caccgtgacgtgaagaccaacaacatactgctggacaacagcttccacgtgaaggtcgcc 154
||||| ||||| |||||||||||||| || || |||| | ||||||||| |||||||||
Sbjct: 137 caccgcgacgtcaagaccaacaacatcctcctcgacaccgacttccacgtcaaggtcgcc 196
Query: 155 gactttgggctgtcgcgcctgtaccctcctgaagtcacccacgtgtcgaccgtcccacag 214
||||| || || || || || | ||| | || | ||||||||| || |||| ||| |||
Sbjct: 197 gacttcggcctctcccggctcttcccgctcgacgccacccacgtctccaccgccccccag 256
Query: 215 ggcacgccgggctacgtcgacccggtgtaccaccagtgctacaagctgaccgagaagagc 274
||||| || || ||||| ||||||| |||||||||||||||| ||||||| || ||||||
Sbjct: 257 ggcaccccagggtacgtggacccggagtaccaccagtgctaccagctgacggacaagagc 316
Query: 275 gacgtgtacagcttcggcgtcgtgctggtcgagctcgtgtcctctaagccagccgtcgac 334
|||||||||||||||||||| |||||||| |||||| | || || ||||| ||||| |||
Sbjct: 317 gacgtgtacagcttcggcgtggtgctggtggagctcatctcgtccaagcccgccgtggac 376
Query: 335 at 336
||
Sbjct: 377 at 378
>gb|AV836884.1|AV836884 AV836884 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd15l22, mRNA
sequence
Length = 687
Score = 151 bits (76), Expect = 3e-035
Identities = 130/148 (87%)
Strand = Plus / Minus
Query: 249 agtgctacaagctgaccgagaagagcgacgtgtacagcttcggcgtcgtgctggtcgagc 308
||||||||||||| ||||| |||||||| ||||||||||| ||||||||| |||| ||||
Sbjct: 687 agtgctacaagcttaccgacaagagcgatgtgtacagctttggcgtcgtgttggtggagc 628
Query: 309 tcgtgtcctctaagccagccgtcgacatgggcaggagccacagcgagatcaacctggcca 368
| | ||||| ||||| || || |||||| |||||||||||| ||||||||||||||||
Sbjct: 627 tgatttcctcaaagcctgctgtggacatgaacaggagccacagtgagatcaacctggcca 568
Query: 369 acatggctctcaacagaatccagaacca 396
|||||||||||||||| || ||||||||
Sbjct: 567 acatggctctcaacaggattcagaacca 540
>gb|BQ466575.1|BQ466575 HT02O23r HT Hordeum vulgare subsp. vulgare cDNA clone HT02O23
5-PRIME, mRNA sequence
Length = 598
Score = 137 bits (69), Expect = 5e-031
Identities = 168/201 (83%)
Strand = Plus / Plus
Query: 136 cttccacgtgaaggtcgccgactttgggctgtcgcgcctgtaccctcctgaagtcaccca 195
||||||||| |||||||||||||| || || || || || | ||| | || | ||||||
Sbjct: 33 cttccacgtcaaggtcgccgacttcggcctctcccggctcttcccgctcgacgccaccca 92
Query: 196 cgtgtcgaccgtcccacagggcacgccgggctacgtcgacccggtgtaccaccagtgcta 255
||| || |||| ||| |||||||| || || ||||| ||||||| |||||||||||||||
Sbjct: 93 cgtctccaccgccccccagggcaccccagggtacgtggacccggagtaccaccagtgcta 152
Query: 256 caagctgaccgagaagagcgacgtgtacagcttcggcgtcgtgctggtcgagctcgtgtc 315
| ||||||| || |||||||||||||||||||||||||| |||||||| |||||| | ||
Sbjct: 153 ccagctgacggacaagagcgacgtgtacagcttcggcgtggtgctggtggagctcatctc 212
Query: 316 ctctaagccagccgtcgacat 336
|| ||||| ||||| |||||
Sbjct: 213 gtccaagcccgccgtggacat 233
>gb|AV929540.1|AV929540 AV929540 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd14j23 3', mRNA sequence
Length = 656
Score = 85.7 bits (43), Expect = 2e-015
Identities = 106/127 (83%)
Strand = Plus / Minus
Query: 212 cagggcacgccgggctacgtcgacccggtgtaccaccagtgctacaagctgaccgagaag 271
||||||||||| || ||||||||||||| |||||| || | ||| |||| || || |||
Sbjct: 613 cagggcacgcccgggtacgtcgacccggcgtaccaacaccggtaccagctcacggacaag 554
Query: 272 agcgacgtgtacagcttcggcgtcgtgctggtcgagctcgtgtcctctaagccagccgtc 331
|||||||| ||||||||||| || ||||| | |||||||||||||| | ||| |||||
Sbjct: 553 agcgacgtctacagcttcggggtggtgctcatggagctcgtgtcctccaggccggccgtg 494
Query: 332 gacatgg 338
|||||||
Sbjct: 493 gacatgg 487
Score = 44.1 bits (22), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 467 ctcgtcgctgagctggcgttccggtgcttgcagc 500
|||||||| ||| |||||||||||||| ||||||
Sbjct: 352 ctcgtcgccgaggtggcgttccggtgcctgcagc 319
>gb|AV929541.1|AV929541 AV929541 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd14j24 3', mRNA sequence
Length = 673
Score = 85.7 bits (43), Expect = 2e-015
Identities = 106/127 (83%)
Strand = Plus / Minus
Query: 212 cagggcacgccgggctacgtcgacccggtgtaccaccagtgctacaagctgaccgagaag 271
||||||||||| || ||||||||||||| |||||| || | ||| |||| || || |||
Sbjct: 612 cagggcacgcccgggtacgtcgacccggcgtaccaacaccggtaccagctcacggacaag 553
Query: 272 agcgacgtgtacagcttcggcgtcgtgctggtcgagctcgtgtcctctaagccagccgtc 331
|||||||| ||||||||||| || ||||| | |||||||||||||| | ||| |||||
Sbjct: 552 agcgacgtctacagcttcggggtggtgctcatggagctcgtgtcctccaggccggccgtg 493
Query: 332 gacatgg 338
|||||||
Sbjct: 492 gacatgg 486
Score = 44.1 bits (22), Expect = 0.006
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 467 ctcgtcgctgagctggcgttccggtgcttgcagc 500
|||||||| ||| |||||||||||||| ||||||
Sbjct: 351 ctcgtcgccgaggtggcgttccggtgcctgcagc 318
>gb|BI950071.1|BI950071 HVSMEl0018F12f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0018F12f, mRNA sequence
Length = 873
Score = 69.9 bits (35), Expect = 1e-010
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 263 accgagaagagcgacgtgtacagcttcggcgtcgtgctg 301
|||||||||||||||||||||||||||||||| ||||||
Sbjct: 58 accgagaagagcgacgtgtacagcttcggcgtggtgctg 96
>gb|BM370694.2|BM370694 EBro04_SQ001_N16_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_N16 5', mRNA sequence
Length = 244
Score = 69.9 bits (35), Expect = 1e-010
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 263 accgagaagagcgacgtgtacagcttcggcgtcgtgctg 301
|||||||||||||||||||||||||||||||| ||||||
Sbjct: 104 accgagaagagcgacgtgtacagcttcggcgtggtgctg 142
>gb|AV837108.1|AV837108 AV837108 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd23n23, mRNA
sequence
Length = 667
Score = 67.9 bits (34), Expect = 4e-010
Identities = 40/42 (95%)
Strand = Plus / Minus
Query: 256 caagctgaccgagaagagcgacgtgtacagcttcggcgtcgt 297
|||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 616 caagctcaccgacaagagcgacgtgtacagcttcggcgtcgt 575
>gb|BG300180.2|BG300180 HVSMEb0010M14f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0010M14f, mRNA sequence
Length = 514
Score = 67.9 bits (34), Expect = 4e-010
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagcttcggcgtcgtgctggtcgagctc 310
|||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct: 402 cgagaagagcgacgtgtacagcttcggcgtggtgctgctggagctc 447
>gb|AV837001.1|AV837001 AV837001 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd22d20, mRNA
sequence
Length = 638
Score = 65.9 bits (33), Expect = 2e-009
Identities = 36/37 (97%)
Strand = Plus / Minus
Query: 258 agctgaccgagaagagcgacgtgtacagcttcggcgt 294
||||||| |||||||||||||||||||||||||||||
Sbjct: 587 agctgacggagaagagcgacgtgtacagcttcggcgt 551
>gb|BF255625.2|BF255625 HVSMEf0007F20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0007F20f, mRNA sequence
Length = 847
Score = 63.9 bits (32), Expect = 6e-009
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 269 aagagcgacgtgtacagcttcggcgtcgtgctggtcgagctcgt 312
|||||||||||||||||||||||||| |||||| | ||||||||
Sbjct: 144 aagagcgacgtgtacagcttcggcgtggtgctgctggagctcgt 187
>gb|BQ462615.1|BQ462615 HI01H17T HI Hordeum vulgare subsp. vulgare cDNA clone HI01H17
5-PRIME, mRNA sequence
Length = 571
Score = 63.9 bits (32), Expect = 6e-009
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 269 aagagcgacgtgtacagcttcggcgtcgtgctggtcgagctcgt 312
|||||||||||||||||||||||||| |||||| | ||||||||
Sbjct: 475 aagagcgacgtgtacagcttcggcgtggtgctgctggagctcgt 518
>gb|BQ660205.1|BQ660205 HI01H17w HI Hordeum vulgare subsp. vulgare cDNA clone HI01H17
3-PRIME, mRNA sequence
Length = 681
Score = 63.9 bits (32), Expect = 6e-009
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 269 aagagcgacgtgtacagcttcggcgtcgtgctggtcgagctcgt 312
|||||||||||||||||||||||||| |||||| | ||||||||
Sbjct: 620 aagagcgacgtgtacagcttcggcgtggtgctgctggagctcgt 577
>gb|BU976968.1|BU976968 HA10J24r HA Hordeum vulgare subsp. vulgare cDNA clone HA10J24
5-PRIME, mRNA sequence
Length = 515
Score = 63.9 bits (32), Expect = 6e-009
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 269 aagagcgacgtgtacagcttcggcgtcgtgctggtcgagctcgt 312
|||||||||||||||||||||||||| |||||| | ||||||||
Sbjct: 137 aagagcgacgtgtacagcttcggcgtggtgctgctggagctcgt 180
>gb|CA020283.1|CA020283 HV14N17r HV Hordeum vulgare subsp. vulgare cDNA clone HV14N17
5-PRIME, mRNA sequence
Length = 494
Score = 63.9 bits (32), Expect = 6e-009
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 269 aagagcgacgtgtacagcttcggcgtcgtgctggtcgagctcgt 312
|||||||||||||||||||||||||| |||||| | ||||||||
Sbjct: 419 aagagcgacgtgtacagcttcggcgtggtgctgctggagctcgt 462
>gb|BF263242.2|BF263242 HV_CEa0006D16f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0006D16f, mRNA sequence
Length = 910
Score = 61.9 bits (31), Expect = 2e-008
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 268 gaagagcgacgtgtacagcttcggcgtcgtgctggtcgagctc 310
||||||||||||||||||||||||||| |||||| | ||||||
Sbjct: 694 gaagagcgacgtgtacagcttcggcgtggtgctgctggagctc 736
>gb|CB875060.1|CB875060 HX07C18w HX Hordeum vulgare subsp. vulgare cDNA clone HX07C18
3-PRIME, mRNA sequence
Length = 640
Score = 56.0 bits (28), Expect = 1e-006
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 261 tgaccgagaagagcgacgtgtacagctt 288
||||||||||||||||||||||||||||
Sbjct: 578 tgaccgagaagagcgacgtgtacagctt 551
>gb|CB875249.1|CB875249 HX07L15w HX Hordeum vulgare subsp. vulgare cDNA clone HX07L15
3-PRIME, mRNA sequence
Length = 620
Score = 56.0 bits (28), Expect = 1e-006
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 261 tgaccgagaagagcgacgtgtacagctt 288
||||||||||||||||||||||||||||
Sbjct: 578 tgaccgagaagagcgacgtgtacagctt 551
>gb|AV928198.1|AV928198 AV928198 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27f16 3', mRNA sequence
Length = 780
Score = 54.0 bits (27), Expect = 6e-006
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 268 gaagagcgacgtgtacagcttcggcgt 294
|||||||||||||||||||||||||||
Sbjct: 631 gaagagcgacgtgtacagcttcggcgt 605
>gb|BQ661898.1|BQ661898 HP01M02w HP Hordeum vulgare subsp. vulgare cDNA clone HP01M02
3-PRIME, mRNA sequence
Length = 601
Score = 54.0 bits (27), Expect = 6e-006
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 275 gacgtgtacagcttcggcgtcgtgctg 301
|||||||||||||||||||||||||||
Sbjct: 467 gacgtgtacagcttcggcgtcgtgctg 441
>gb|BQ661900.1|BQ661900 HP01M04w HP Hordeum vulgare subsp. vulgare cDNA clone HP01M04
3-PRIME, mRNA sequence
Length = 651
Score = 54.0 bits (27), Expect = 6e-006
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 275 gacgtgtacagcttcggcgtcgtgctg 301
|||||||||||||||||||||||||||
Sbjct: 467 gacgtgtacagcttcggcgtcgtgctg 441
>gb|BM370983.2|BM370983 EBro04_SQ003_C04_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_C04 5', mRNA sequence
Length = 670
Score = 54.0 bits (27), Expect = 6e-006
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 260 ctgaccgagaagagcgacgtgtacagcttcggcgtcgtgctggtcgagctc 310
||||||| ||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 171 ctgaccgccaagagcgacgtctacagcttcggcgtcgtcctcctcgagctc 221
>gb|CB879472.1|CB879472 HP02G07w HP Hordeum vulgare subsp. vulgare cDNA clone HP02G07
3-PRIME, mRNA sequence
Length = 674
Score = 54.0 bits (27), Expect = 6e-006
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 275 gacgtgtacagcttcggcgtcgtgctg 301
|||||||||||||||||||||||||||
Sbjct: 467 gacgtgtacagcttcggcgtcgtgctg 441
>gb|AV833891.1|AV833891 AV833891 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags10e15, mRNA sequence
Length = 679
Score = 52.0 bits (26), Expect = 2e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 265 cgagaagagcgacgtgtacagcttcggcgt 294
||||||| ||||||||||||||||||||||
Sbjct: 449 cgagaagtgcgacgtgtacagcttcggcgt 420
>gb|CA023792.1|CA023792 HZ47G18r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ47G18
5-PRIME, mRNA sequence
Length = 539
Score = 52.0 bits (26), Expect = 2e-005
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 260 ctgaccgagaagagcgacgtgtacagcttcggcgtcgtgctg 301
||||| |||||||||||||||||||| ||||| || ||||||
Sbjct: 46 ctgactgagaagagcgacgtgtacagtttcggggttgtgctg 87
>gb|CB877154.1|CB877154 HP03L21T HP Hordeum vulgare subsp. vulgare cDNA clone HP03L21
5-PRIME, mRNA sequence
Length = 449
Score = 52.0 bits (26), Expect = 2e-005
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 275 gacgtgtacagcttcggcgtcgtgctggtcgagctcgt 312
|||||||||||||||||| |||||||| | ||||||||
Sbjct: 161 gacgtgtacagcttcggcctcgtgctgtttgagctcgt 198
>gb|BU983256.1|BU983256 HA29B10r HA Hordeum vulgare subsp. vulgare cDNA clone HA29B10
5-PRIME, mRNA sequence
Length = 569
Score = 50.1 bits (25), Expect = 9e-005
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 269 aagagcgacgtgtacagcttcggcgtcgtgctg 301
||||||||||||||||||||||| || ||||||
Sbjct: 222 aagagcgacgtgtacagcttcggggtggtgctg 254
>gb|BU995787.1|BU995787 HM11F21r HM Hordeum vulgare subsp. vulgare cDNA clone HM11F21
5-PRIME, mRNA sequence
Length = 416
Score = 50.1 bits (25), Expect = 9e-005
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 269 aagagcgacgtgtacagcttcggcgtcgtgctg 301
||||||||||||||||||||||| || ||||||
Sbjct: 153 aagagcgacgtgtacagcttcggggtggtgctg 185
>gb|BU996535.1|BU996535 HM13O21r HM Hordeum vulgare subsp. vulgare cDNA clone HM13O21
5-PRIME, mRNA sequence
Length = 561
Score = 50.1 bits (25), Expect = 9e-005
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 268 gaagagcgacgtgtacagcttcggcgtcgtgct 300
|||||||||||||||||||||||| || |||||
Sbjct: 89 gaagagcgacgtgtacagcttcggggtggtgct 121
>gb|CB881943.1|CB881943 HM11F21w HM Hordeum vulgare subsp. vulgare cDNA clone HM11F21
3-PRIME, mRNA sequence
Length = 464
Score = 50.1 bits (25), Expect = 9e-005
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 269 aagagcgacgtgtacagcttcggcgtcgtgctg 301
||||||||||||||||||||||| || ||||||
Sbjct: 391 aagagcgacgtgtacagcttcggggtggtgctg 359
>gb|BF621298.2|BF621298 HVSMEa0006G11f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0006G11f, mRNA sequence
Length = 673
Score = 48.1 bits (24), Expect = 4e-004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 267 agaagagcgacgtgtacagcttcggcgt 294
|||||||||||||||||||| |||||||
Sbjct: 103 agaagagcgacgtgtacagcctcggcgt 130
>gb|BF623192.2|BF623192 HVSMEa0015C06f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0015C06f, mRNA sequence
Length = 790
Score = 48.1 bits (24), Expect = 4e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagcttcggcgtcgtgctggtcgagctcgt 312
|||||||||||| || ||||||||||| || |||||| | ||||||||
Sbjct: 107 cgagaagagcgatgtctacagcttcggtgtggtgctgctggagctcgt 154
>gb|BF256735.2|BF256735 HVSMEf0010N17f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010N17f, mRNA sequence
Length = 844
Score = 48.1 bits (24), Expect = 4e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 266 gagaagagcgacgtgtacagcttcggcgtcgtgctg 301
|||||||||||||| |||||||| ||||| ||||||
Sbjct: 91 gagaagagcgacgtttacagctttggcgttgtgctg 126
>gb|BE558792.2|BE558792 HV_CEb0020G08f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020G08f, mRNA sequence
Length = 797
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 260 ctgaccgagaagagcgacgtgtacagcttcgg 291
||||| || |||||||||||||||||||||||
Sbjct: 344 ctgacggacaagagcgacgtgtacagcttcgg 375
>gb|BQ762476.1|BQ762476 EBro01_SQ005_P23 _R root, 3 week, hydroponic grown, no treatment,
cv Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA
clone EBro01_SQ005_P23 5', mRNA sequence
Length = 630
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 260 ctgaccgagaagagcgacgtgtacagcttcgg 291
||||| |||||||||||||||||||| |||||
Sbjct: 569 ctgactgagaagagcgacgtgtacagtttcgg 600
>gb|BQ765808.1|BQ765808 EBro03_SQ008_A09_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ008_A09 5', mRNA sequence
Length = 588
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 263 accgagaagagcgacgtgtacagcttcggcgt 294
|||| |||||||||||||||| ||||||||||
Sbjct: 476 accgtgaagagcgacgtgtacggcttcggcgt 507
>gb|BU980874.1|BU980874 HA21P04r HA Hordeum vulgare subsp. vulgare cDNA clone HA21P04
5-PRIME, mRNA sequence
Length = 262
Score = 48.1 bits (24), Expect = 4e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 268 gaagagcgacgtgtacagcttcgg 291
||||||||||||||||||||||||
Sbjct: 146 gaagagcgacgtgtacagcttcgg 169
>gb|CA023853.1|CA023853 HZ47J17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ47J17
5-PRIME, mRNA sequence
Length = 611
Score = 48.1 bits (24), Expect = 4e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagcttcggcgtcgtgctggtcgagctcgt 312
|||||||||||| || ||||||||||| || |||||| | ||||||||
Sbjct: 320 cgagaagagcgatgtctacagcttcggtgtggtgctgctggagctcgt 367
>gb|CB878585.1|CB878585 HP09B03T HP Hordeum vulgare subsp. vulgare cDNA clone HP09B03
5-PRIME, mRNA sequence
Length = 566
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 255 acaagctgaccgagaagagcgacgtgtacagc 286
|||||||||| || ||||||||||||||||||
Sbjct: 18 acaagctgacggacaagagcgacgtgtacagc 49
>gb|BQ759758.1|BQ759758 EBpi05_SQ004_F10_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_F10 5', mRNA sequence
Length = 489
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 275 gacgtgtacagcttcggcgtcgtgctg 301
||||||||||||||||||||| |||||
Sbjct: 308 gacgtgtacagcttcggcgtcctgctg 334
>gb|BU995308.1|BU995308 HM09N12r HM Hordeum vulgare subsp. vulgare cDNA clone HM09N12
5-PRIME, mRNA sequence
Length = 410
Score = 46.1 bits (23), Expect = 0.001
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 271 gagcgacgtgtacagcttcggcgtcgtgctg 301
||||||||||||||||||||| || ||||||
Sbjct: 173 gagcgacgtgtacagcttcggggtggtgctg 203
>gb|CA011468.1|CA011468 HT05J08u HT Hordeum vulgare subsp. vulgare cDNA clone HT05J08
3-PRIME, mRNA sequence
Length = 477
Score = 46.1 bits (23), Expect = 0.001
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 274 cgacgtgtacagcttcggcgtcgtgctggtcgagctcgtgtcc 316
||||||||||||||||||| | |||||| | ||| ||||||||
Sbjct: 471 cgacgtgtacagcttcggcatggtgctgctggagatcgtgtcc 429
>gb|AV833971.1|AV833971 AV833971 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags20a15, mRNA sequence
Length = 654
Score = 44.1 bits (22), Expect = 0.006
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 259 gctgaccgagaagagcgacgtgtacagctt 288
|||||| || ||||||||||||||||||||
Sbjct: 527 gctgacagacaagagcgacgtgtacagctt 498
>gb|AV915770.1|AV915770 AV915770 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags15p05 5', mRNA sequence
Length = 544
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 266 gagaagagcgacgtgtacagcttcgg 291
||||||||||| ||||||||||||||
Sbjct: 25 gagaagagcgatgtgtacagcttcgg 50
>gb|AV930414.1|AV930414 AV930414 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22h06 3', mRNA sequence
Length = 567
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 266 gagaagagcgacgtgtacagcttcgg 291
||||||||||| ||||||||||||||
Sbjct: 416 gagaagagcgatgtgtacagcttcgg 391
>gb|BM443542.2|BM443542 EBro02_SQ005_J14_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ005_J14 5', mRNA sequence
Length = 362
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 266 gagaagagcgacgtgtacagcttcgg 291
||||||||||| ||||||||||||||
Sbjct: 106 gagaagagcgatgtgtacagcttcgg 131
>gb|BQ768749.1|BQ768749 EBro08_SQ012_G15_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_G15 5', mRNA sequence
Length = 635
Score = 44.1 bits (22), Expect = 0.006
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 269 aagagcgacgtgtacagcttcggcgtcgtgctggtcgagctc 310
||||||||||| ||| ||||||| ||||||||| | ||||||
Sbjct: 361 aagagcgacgtctacggcttcggggtcgtgctgctggagctc 402
>gb|CA023440.1|CA023440 HZ46E02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46E02
5-PRIME, mRNA sequence
Length = 234
Score = 44.1 bits (22), Expect = 0.006
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 260 ctgaccgagaagagcgacgtgtacag 285
||||| ||||||||||||||||||||
Sbjct: 43 ctgactgagaagagcgacgtgtacag 68
>gb|BE215906.2|BE215906 HV_CEb0008M23f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0008M23f, mRNA sequence
Length = 492
Score = 42.1 bits (21), Expect = 0.022
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 269 aagagcgacgtgtacagcttcggcgtcgtgctg 301
||||||||||||||| | |||||||| ||||||
Sbjct: 36 aagagcgacgtgtacgggttcggcgtggtgctg 68
>gb|BF265817.3|BF265817 HV_CEa0013G16f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013G16f, mRNA sequence
Length = 417
Score = 42.1 bits (21), Expect = 0.022
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 269 aagagcgacgtgtacagcttcggcgtcgtgctg 301
||||| |||||||||||||| || |||||||||
Sbjct: 144 aagagtgacgtgtacagctttggtgtcgtgctg 176
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 54,606
Number of Sequences: 312970
Number of extensions: 54606
Number of successful extensions: 16094
Number of sequences better than 0.5: 75
Number of HSP's better than 0.5 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16003
Number of HSP's gapped (non-prelim): 91
length of query: 644
length of database: 175,134,539
effective HSP length: 19
effective length of query: 625
effective length of database: 169,188,109
effective search space: 105742568125
effective search space used: 105742568125
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)