BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL17f07.xg.2.1
(657 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG366826.2|BG366826 HVSMEi0008I04f Hordeum vulgare 20 DA... 40 0.089
gb|BQ660153.1|BQ660153 HI01D09w HI Hordeum vulgare subsp. v... 40 0.089
gb|BQ660386.1|BQ660386 HI02D21u HI Hordeum vulgare subsp. v... 40 0.089
gb|BU998353.1|BU998353 HI10M13r HI Hordeum vulgare subsp. v... 40 0.089
gb|BI954131.1|BI954131 HVSMEm0016F08f Hordeum vulgare green... 38 0.35
gb|BF264122.2|BF264122 HV_CEa0008J10f Hordeum vulgare seedl... 38 0.35
gb|AV914507.1|AV914507 AV914507 K. Sato unpublished cDNA li... 38 0.35
gb|AV919571.1|AV919571 AV919571 K. Sato unpublished cDNA li... 38 0.35
gb|AV925713.1|AV925713 AV925713 K. Sato unpublished cDNA li... 38 0.35
gb|AV926758.1|AV926758 AV926758 K. Sato unpublished cDNA li... 38 0.35
gb|BJ451163.1|BJ451163 BJ451163 K. Sato unpublished cDNA li... 38 0.35
gb|BQ467910.1|BQ467910 HR01F05r HR Hordeum vulgare subsp. v... 38 0.35
gb|BM101114.2|BM101114 EBpi01_SQ002_O16_R pistil, 1 DPA, no... 38 0.35
gb|BM100975.2|BM100975 EBpi01_SQ002_H19_R pistil, 1 DPA, no... 38 0.35
gb|BM374269.2|BM374269 EBpi03_SQ003_C10_R pistil, 4 DPA, no... 38 0.35
gb|BI779049.2|BI779049 EBro01_SQ002_L21_R root, 3 week, hyd... 38 0.35
gb|BM370569.2|BM370569 EBro08_SQ004_J23_R root, 3 week, dro... 38 0.35
gb|CA001795.1|CA001795 HS05J17r HS Hordeum vulgare subsp. v... 38 0.35
gb|CA003950.1|CA003950 HS16B13r HS Hordeum vulgare subsp. v... 38 0.35
gb|CA004753.1|CA004753 HS18J07r HS Hordeum vulgare subsp. v... 38 0.35
gb|CA011913.1|CA011913 HT03O09r HT Hordeum vulgare subsp. v... 38 0.35
gb|CA026029.1|CA026029 HZ53O05r HZ Hordeum vulgare subsp. v... 38 0.35
gb|CB876956.1|CB876956 HP03A15T HP Hordeum vulgare subsp. v... 38 0.35
gb|CB882721.1|CB882721 HL02K15w HL Hordeum vulgare subsp. v... 38 0.35
>gb|BG366826.2|BG366826 HVSMEi0008I04f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0008I04f, mRNA sequence
Length = 497
Score = 40.1 bits (20), Expect = 0.089
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 296 catcgctgctgctgctgctg 315
||||||||||||||||||||
Sbjct: 193 catcgctgctgctgctgctg 212
>gb|BQ660153.1|BQ660153 HI01D09w HI Hordeum vulgare subsp. vulgare cDNA clone HI01D09
3-PRIME, mRNA sequence
Length = 357
Score = 40.1 bits (20), Expect = 0.089
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 296 catcgctgctgctgctgctg 315
||||||||||||||||||||
Sbjct: 179 catcgctgctgctgctgctg 198
>gb|BQ660386.1|BQ660386 HI02D21u HI Hordeum vulgare subsp. vulgare cDNA clone HI02D21
3-PRIME, mRNA sequence
Length = 323
Score = 40.1 bits (20), Expect = 0.089
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 296 catcgctgctgctgctgctg 315
||||||||||||||||||||
Sbjct: 183 catcgctgctgctgctgctg 202
>gb|BU998353.1|BU998353 HI10M13r HI Hordeum vulgare subsp. vulgare cDNA clone HI10M13
5-PRIME, mRNA sequence
Length = 372
Score = 40.1 bits (20), Expect = 0.089
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 334 gcggcggcggagacgatgacgacc 357
|||||||||||| |||||||||||
Sbjct: 269 gcggcggcggaggcgatgacgacc 292
>gb|BI954131.1|BI954131 HVSMEm0016F08f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0016F08f, mRNA sequence
Length = 687
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 295 gcatcgctgctgctgctgc 313
|||||||||||||||||||
Sbjct: 130 gcatcgctgctgctgctgc 112
>gb|BF264122.2|BF264122 HV_CEa0008J10f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0008J10f, mRNA sequence
Length = 650
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 336 ggcggcggagacgatgacg 354
|||||||||||||||||||
Sbjct: 294 ggcggcggagacgatgacg 276
>gb|AV914507.1|AV914507 AV914507 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6k10 5', mRNA sequence
Length = 619
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 300 gctgctgctgctgctgaac 282
>gb|AV919571.1|AV919571 AV919571 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6k10 3', mRNA sequence
Length = 727
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 702 gctgctgctgctgctgaac 720
>gb|AV925713.1|AV925713 AV925713 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25i08 5', mRNA sequence
Length = 415
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 295 gcatcgctgctgctgctgc 313
|||||||||||||||||||
Sbjct: 220 gcatcgctgctgctgctgc 202
>gb|AV926758.1|AV926758 AV926758 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23k14 5', mRNA sequence
Length = 565
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 295 gcatcgctgctgctgctgc 313
|||||||||||||||||||
Sbjct: 219 gcatcgctgctgctgctgc 201
>gb|BJ451163.1|BJ451163 BJ451163 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak32p12 5', mRNA sequence
Length = 655
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 336 ggcggcggagacgatgacg 354
|||||||||||||||||||
Sbjct: 21 ggcggcggagacgatgacg 3
>gb|BQ467910.1|BQ467910 HR01F05r HR Hordeum vulgare subsp. vulgare cDNA clone HR01F05
5-PRIME, mRNA sequence
Length = 569
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 296 catcgctgctgctgctgct 314
|||||||||||||||||||
Sbjct: 127 catcgctgctgctgctgct 109
>gb|BM101114.2|BM101114 EBpi01_SQ002_O16_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ002_O16 5', mRNA sequence
Length = 487
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 29 gctgctgctgctgctgaac 11
>gb|BM100975.2|BM100975 EBpi01_SQ002_H19_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ002_H19 5', mRNA sequence
Length = 543
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 295 gcatcgctgctgctgctgc 313
|||||||||||||||||||
Sbjct: 204 gcatcgctgctgctgctgc 186
>gb|BM374269.2|BM374269 EBpi03_SQ003_C10_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_C10 5', mRNA sequence
Length = 537
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 106 gctgctgctgctgctgaac 88
>gb|BI779049.2|BI779049 EBro01_SQ002_L21_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ002_L21 5', mRNA sequence
Length = 470
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 295 gcatcgctgctgctgctgc 313
|||||||||||||||||||
Sbjct: 139 gcatcgctgctgctgctgc 121
>gb|BM370569.2|BM370569 EBro08_SQ004_J23_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ004_J23 5', mRNA sequence
Length = 658
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 295 gcatcgctgctgctgctgc 313
|||||||||||||||||||
Sbjct: 124 gcatcgctgctgctgctgc 106
>gb|CA001795.1|CA001795 HS05J17r HS Hordeum vulgare subsp. vulgare cDNA clone HS05J17
5-PRIME, mRNA sequence
Length = 470
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 336 ggcggcggagacgatgacg 354
|||||||||||||||||||
Sbjct: 444 ggcggcggagacgatgacg 426
>gb|CA003950.1|CA003950 HS16B13r HS Hordeum vulgare subsp. vulgare cDNA clone HS16B13
5-PRIME, mRNA sequence
Length = 402
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 295 gcatcgctgctgctgctgc 313
|||||||||||||||||||
Sbjct: 51 gcatcgctgctgctgctgc 33
>gb|CA004753.1|CA004753 HS18J07r HS Hordeum vulgare subsp. vulgare cDNA clone HS18J07
5-PRIME, mRNA sequence
Length = 429
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 336 ggcggcggagacgatgacg 354
|||||||||||||||||||
Sbjct: 288 ggcggcggagacgatgacg 270
>gb|CA011913.1|CA011913 HT03O09r HT Hordeum vulgare subsp. vulgare cDNA clone HT03O09
5-PRIME, mRNA sequence
Length = 636
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 295 gcatcgctgctgctgctgc 313
|||||||||||||||||||
Sbjct: 145 gcatcgctgctgctgctgc 127
>gb|CA026029.1|CA026029 HZ53O05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53O05
5-PRIME, mRNA sequence
Length = 582
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 300 gctgctgctgctgctgaac 318
|||||||||||||||||||
Sbjct: 269 gctgctgctgctgctgaac 251
>gb|CB876956.1|CB876956 HP03A15T HP Hordeum vulgare subsp. vulgare cDNA clone HP03A15
5-PRIME, mRNA sequence
Length = 472
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 295 gcatcgctgctgctgctgc 313
|||||||||||||||||||
Sbjct: 72 gcatcgctgctgctgctgc 54
>gb|CB882721.1|CB882721 HL02K15w HL Hordeum vulgare subsp. vulgare cDNA clone HL02K15
3-PRIME, mRNA sequence
Length = 631
Score = 38.2 bits (19), Expect = 0.35
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 295 gcatcgctgctgctgctgc 313
|||||||||||||||||||
Sbjct: 146 gcatcgctgctgctgctgc 128
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 105,378
Number of Sequences: 312970
Number of extensions: 105378
Number of successful extensions: 41342
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41280
Number of HSP's gapped (non-prelim): 48
length of query: 657
length of database: 175,134,539
effective HSP length: 19
effective length of query: 638
effective length of database: 169,188,109
effective search space: 107942013542
effective search space used: 107942013542
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)