BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBD3a09.xg.3.1
(1105 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL505985.1|AL505985 AL505985 Hordeum vulgare Barke devel... 561 e-158
gb|CA032672.1|CA032672 HX13N16r HX Hordeum vulgare subsp. v... 511 e-143
gb|AV923623.1|AV923623 AV923623 K. Sato unpublished cDNA li... 500 e-140
gb|BQ466322.1|BQ466322 HT02D09r HT Hordeum vulgare subsp. v... 488 e-136
gb|AV928069.1|AV928069 AV928069 K. Sato unpublished cDNA li... 412 e-113
gb|AV929739.1|AV929739 AV929739 K. Sato unpublished cDNA li... 377 e-103
gb|AL500012.1|AL500012 AL500012 Hordeum vulgare Barke etiol... 287 4e-076
gb|CA012379.1|CA012379 HT05E07r HT Hordeum vulgare subsp. v... 270 9e-071
gb|AL450843.1|AL450843 AL450843 Hordeum vulgare Barke etiol... 252 2e-065
gb|BI950822.1|BI950822 HVSMEl0023F04f Hordeum vulgare spike... 232 2e-059
gb|AV924645.1|AV924645 AV924645 K. Sato unpublished cDNA li... 178 3e-043
>gb|AL505985.1|AL505985 AL505985 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01E03T 5',
mRNA sequence
Length = 700
Score = 561 bits (283), Expect = e-158
Identities = 583/684 (85%)
Strand = Plus / Plus
Query: 126 aatggcggcggcggtgcggcgagcggaggagctggtggagagggagatgggcgggcgcga 185
|||| |||||||||||||| | || |||||||| ||||||||||||||| ||||||||||
Sbjct: 6 aatgacggcggcggtgcggtgtgccgaggagctagtggagagggagatgagcgggcgcga 65
Query: 186 tgcctcccacgacgccgcgcacgcgctccgcgtccgagaccttgcgctctcgctcgcagc 245
||||||||||||||||| ||||| ||||||||||| ||||| |||||||| ||||| |
Sbjct: 66 cgcctcccacgacgccgctcacgcactccgcgtccgggacctcgcgctctccctcgccgn 125
Query: 246 cgaagagggcctctccgctcccgaccgcctcctcaccgtggaactggccgctctcctgca 305
||| ||||| ||||| | || ||||||||||||| |||||||||||| || ||||||||
Sbjct: 126 cgagcagggcgtctcctccccggaccgcctcctcatcgtggaactggctgcactcctgca 185
Query: 306 cgacgttggagattacaagtataccaagaacaatgtggaggatatgagcgtcgttgagat 365
|||| | || |||||||||||||||||| | |||| ||||||||||||| |||| | |
Sbjct: 186 cgacatcggtgattacaagtataccaaggataatgcggaggatatgagcatcgtcaaaag 245
Query: 366 gtttcttcaagaggtaggattggatgaaggccaaaaggatgaaatagtggcaattattaa 425
||||||| |||||| || | || || || || ||||| ||||||||||| |||||||
Sbjct: 246 gtttcttggagaggtgggtctcgaggagggacagaaggaggaaatagtggccattattac 305
Query: 426 ggggatggggttcaaaaatgaagtttcaaataaatctattgttgagcccactcttgaatt 485
|||||||| ||||||||||| |||||||| || || || ||| |||||||||| ||
Sbjct: 306 agggatgggattcaaaaatgaggtttcaaagaagcttaatgcagagaccactcttgagtt 365
Query: 486 tgcaattgtacaagatgcagatcgcctggatgcaattggggcaattggtattgcaagatg 545
|||||| || |||||||||||||| |||||||||||||| || ||||| ||||||||||
Sbjct: 366 tgcaatcgtgcaagatgcagatcgtctggatgcaattggtgcgattggcgttgcaagatg 425
Query: 546 ttttacatatggtggtagcaagaacagcgcattacatgatcctagaattctgccacgtga 605
|||||||||||| || ||||||||||| ||||| |||||||||| | || || || ||
Sbjct: 426 ttttacatatggagggagcaagaacagtgcattgcatgatcctaacgtacttccgcggga 485
Query: 606 tagcttgtcgaaggaaaagtacatgtccaaggaagagaagcagacatcaatcaatcattt 665
|| ||||| ||||| ||||||||||||||||| ||||| || |||||||| ||||||||
Sbjct: 486 taatttgtcaaaggagaagtacatgtccaaggaggagaaacaaacatcaattaatcattt 545
Query: 666 tcatgagaagctttttaaactgaaggacatgatgaagacagaggccgggaaaaggagagc 725
||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 546 ccatgagaagctttttaagttgaaggacatgatgaagacagaggctgggaaaaagagagc 605
Query: 726 tgagaaaaggcataggttcatggaggaatttgtggctgaattctacgaagagtggagtgg 785
||||||||||| | |||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 606 agagaaaaggcacaagttcatggagacttttgtggctgaattctatgaagagtggagtgn 665
Query: 786 cagggcttgaggttgaacaaccag 809
|| ||||||| ||||| |||||||
Sbjct: 666 canggcttgaagttgaccaaccag 689
>gb|CA032672.1|CA032672 HX13N16r HX Hordeum vulgare subsp. vulgare cDNA clone HX13N16
5-PRIME, mRNA sequence
Length = 645
Score = 511 bits (258), Expect = e-143
Identities = 534/626 (85%)
Strand = Plus / Plus
Query: 125 aaatggcggcggcggtgcggcgagcggaggagctggtggagagggagatgggcgggcgcg 184
||||| |||||||||||||| | || |||||||| ||||||||||||||| |||||||||
Sbjct: 14 aaatgacggcggcggtgcggtgtgccgaggagctagtggagagggagatgagcgggcgcg 73
Query: 185 atgcctcccacgacgccgcgcacgcgctccgcgtccgagaccttgcgctctcgctcgcag 244
| ||||||||||||||||| ||||| ||||||||||| ||||| |||||||| ||||| |
Sbjct: 74 acgcctcccacgacgccgctcacgcactccgcgtccgggacctcgcgctctccctcgccg 133
Query: 245 ccgaagagggcctctccgctcccgaccgcctcctcaccgtggaactggccgctctcctgc 304
|||| ||||| ||||| | || ||||||||||||| |||||||||||| || |||||||
Sbjct: 134 ccgagcagggcgtctcctccccggaccgcctcctcatcgtggaactggctgcactcctgc 193
Query: 305 acgacgttggagattacaagtataccaagaacaatgtggaggatatgagcgtcgttgaga 364
||||| | || |||||||||||||||||| | |||| ||||||||||||| |||| | |
Sbjct: 194 acgacatcggtgattacaagtataccaaggataatgcggaggatatgagcatcgtcaaaa 253
Query: 365 tgtttcttcaagaggtaggattggatgaaggccaaaaggatgaaatagtggcaattatta 424
||||||| |||||| || | || || || || ||||| ||||||||||| |||||||
Sbjct: 254 ggtttcttggagaggtgggtctcgaggagggacagaaggaggaaatagtggccattatta 313
Query: 425 aggggatggggttcaaaaatgaagtttcaaataaatctattgttgagcccactcttgaat 484
|||||||| ||||||||||| |||||||| || || || ||| |||||||||| |
Sbjct: 314 cagggatgggattcaaaaatgaggtttcaaagaagcttaatgcagagaccactcttgagt 373
Query: 485 ttgcaattgtacaagatgcagatcgcctggatgcaattggggcaattggtattgcaagat 544
||||||| || |||||||||||||| |||||||||||||| || ||||| |||||||||
Sbjct: 374 ttgcaatcgtgcaagatgcagatcgtctggatgcaattggtgcgattggcgttgcaagat 433
Query: 545 gttttacatatggtggtagcaagaacagcgcattacatgatcctagaattctgccacgtg 604
||||||||||||| || ||||||||||| ||||| |||||||||| | || || || |
Sbjct: 434 gttttacatatggagggagcaagaacagtgcattgcatgatcctaacgtacttccgcggg 493
Query: 605 atagcttgtcgaaggaaaagtacatgtccaaggaagagaagcagacatcaatcaatcatt 664
||| ||||| ||||| ||||||||||||||||| ||||| || |||||||| |||||||
Sbjct: 494 ataatttgtcaaaggagaagtacatgtccaaggaggagaaacaaacatcaattaatcatt 553
Query: 665 ttcatgagaagctttttaaactgaaggacatgatgaagacagaggccgggaaaaggagag 724
| ||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||
Sbjct: 554 tccatgagaagctttttaagttgaaggacatgatgaagacagaggctgggaaaaagagag 613
Query: 725 ctgagaaaaggcataggttcatggag 750
| ||||||||||| | ||||||||||
Sbjct: 614 cagagaaaaggcacaagttcatggag 639
>gb|AV923623.1|AV923623 AV923623 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd13m20 5', mRNA sequence
Length = 668
Score = 500 bits (252), Expect = e-140
Identities = 522/612 (85%)
Strand = Plus / Plus
Query: 125 aaatggcggcggcggtgcggcgagcggaggagctggtggagagggagatgggcgggcgcg 184
||||| |||||||||||||| | || |||||||| ||||||||||||||| |||||||||
Sbjct: 57 aaatgacggcggcggtgcggtgtgccgaggagctagtggagagggagatgagcgggcgcg 116
Query: 185 atgcctcccacgacgccgcgcacgcgctccgcgtccgagaccttgcgctctcgctcgcag 244
| ||||||||||||||||| ||||| ||||||||||| ||||| |||||||| ||||| |
Sbjct: 117 acgcctcccacgacgccgctcacgcactccgcgtccgggacctcgcgctctccctcgccg 176
Query: 245 ccgaagagggcctctccgctcccgaccgcctcctcaccgtggaactggccgctctcctgc 304
|||| ||||| ||||| | || ||||||||||||| |||||||||||| || |||||||
Sbjct: 177 ccgagcagggcgtctcctccccggaccgcctcctcatcgtggaactggctgcactcctgc 236
Query: 305 acgacgttggagattacaagtataccaagaacaatgtggaggatatgagcgtcgttgaga 364
||||| | || |||||||||||||||||| | |||| ||||||||||||| |||| | |
Sbjct: 237 acgacatcggtgattacaagtataccaaggataatgcggaggatatgagcatcgtcaaaa 296
Query: 365 tgtttcttcaagaggtaggattggatgaaggccaaaaggatgaaatagtggcaattatta 424
||||||| |||||| || | || || || || ||||| ||||||||||| |||||||
Sbjct: 297 ggtttcttggagaggtgggtctcgaggagggacagaaggaggaaatagtggccattatta 356
Query: 425 aggggatggggttcaaaaatgaagtttcaaataaatctattgttgagcccactcttgaat 484
|||||||| ||||||||||| |||||||| || || || ||| |||||||||| |
Sbjct: 357 cagggatgggattcaaaaatgaggtttcaaagaagcttaatgcagagaccactcttgagt 416
Query: 485 ttgcaattgtacaagatgcagatcgcctggatgcaattggggcaattggtattgcaagat 544
||||||| || |||||||||||||| |||||||||||||| || ||||| |||||||||
Sbjct: 417 ttgcaatcgtgcaagatgcagatcgtctggatgcaattggtgcgattggcgttgcaagat 476
Query: 545 gttttacatatggtggtagcaagaacagcgcattacatgatcctagaattctgccacgtg 604
||||||||||||| || ||||||||||| ||||| |||||||||| | || || || |
Sbjct: 477 gttttacatatggagggagcaagaacagtgcattgcatgatcctaacgtacttccgcggg 536
Query: 605 atagcttgtcgaaggaaaagtacatgtccaaggaagagaagcagacatcaatcaatcatt 664
||| ||||| ||||| ||||||||||||||||| ||||| || |||||||| |||||||
Sbjct: 537 ataatttgtcaaaggagaagtacatgtccaaggaggagaaacaaacatcaattaatcatt 596
Query: 665 ttcatgagaagctttttaaactgaaggacatgatgaagacagaggccgggaaaaggagag 724
| ||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||
Sbjct: 597 tccatgagaagctttttaagttgaaggacatgatgaagacagaggctgggaaaaagagag 656
Query: 725 ctgagaaaaggc 736
| ||||||||||
Sbjct: 657 cagagaaaaggc 668
>gb|BQ466322.1|BQ466322 HT02D09r HT Hordeum vulgare subsp. vulgare cDNA clone HT02D09
5-PRIME, mRNA sequence
Length = 613
Score = 488 bits (246), Expect = e-136
Identities = 510/598 (85%)
Strand = Plus / Plus
Query: 151 gaggagctggtggagagggagatgggcgggcgcgatgcctcccacgacgccgcgcacgcg 210
|||||||| ||||||||||||||| |||||||||| ||||||||||||||||| |||||
Sbjct: 16 gaggagctagtggagagggagatgagcgggcgcgacgcctcccacgacgccgctcacgca 75
Query: 211 ctccgcgtccgagaccttgcgctctcgctcgcagccgaagagggcctctccgctcccgac 270
||||||||||| ||||| |||||||| ||||| ||||| ||||| ||||| | || |||
Sbjct: 76 ctccgcgtccgggacctcgcgctctccctcgccgccgagcagggcgtctcctccccggac 135
Query: 271 cgcctcctcaccgtggaactggccgctctcctgcacgacgttggagattacaagtatacc 330
|||||||||| |||||||||||| || |||||||||||| | || |||||||||||||||
Sbjct: 136 cgcctcctcatcgtggaactggctgcactcctgcacgacatcggtgattacaagtatacc 195
Query: 331 aagaacaatgtggaggatatgagcgtcgttgagatgtttcttcaagaggtaggattggat 390
||| | |||| ||||||||||||| |||| | | ||||||| |||||| || | ||
Sbjct: 196 aaggataatgcggaggatatgagcatcgtcaaaaggtttcttggagaggtgggtctcgag 255
Query: 391 gaaggccaaaaggatgaaatagtggcaattattaaggggatggggttcaaaaatgaagtt 450
|| || || ||||| ||||||||||| ||||||| |||||||| ||||||||||| |||
Sbjct: 256 gagggacagaaggaggaaatagtggccattattacagggatgggattcaaaaatgaggtt 315
Query: 451 tcaaataaatctattgttgagcccactcttgaatttgcaattgtacaagatgcagatcgc 510
||||| || || || ||| |||||||||| |||||||| || ||||||||||||||
Sbjct: 316 tcaaagaagcttaatgcagagaccactcttgagtttgcaatcgtgcaagatgcagatcgt 375
Query: 511 ctggatgcaattggggcaattggtattgcaagatgttttacatatggtggtagcaagaac 570
|||||||||||||| || ||||| |||||||||||||||||||||| || |||||||||
Sbjct: 376 ctggatgcaattggtgcgattggcgttgcaagatgttttacatatggagggagcaagaac 435
Query: 571 agcgcattacatgatcctagaattctgccacgtgatagcttgtcgaaggaaaagtacatg 630
|| ||||| |||||||||| | || || || |||| ||||| ||||| |||||||||
Sbjct: 436 agtgcattgcatgatcctaacgtacttccgcgggataatttgtcaaaggagaagtacatg 495
Query: 631 tccaaggaagagaagcagacatcaatcaatcattttcatgagaagctttttaaactgaag 690
|||||||| ||||| || |||||||| |||||||| ||||||||||||||||| |||||
Sbjct: 496 tccaaggaggagaaacaaacatcaattaatcatttccatgagaagctttttaagttgaag 555
Query: 691 gacatgatgaagacagaggccgggaaaaggagagctgagaaaaggcataggttcatgg 748
|||||||||||||||||||| ||||||| |||||| ||||||||||| | ||||||||
Sbjct: 556 gacatgatgaagacagaggctgggaaaaagagagcagagaaaaggcacaagttcatgg 613
>gb|AV928069.1|AV928069 AV928069 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd13m20 3', mRNA sequence
Length = 667
Score = 412 bits (208), Expect = e-113
Identities = 436/512 (85%)
Strand = Plus / Minus
Query: 298 ctcctgcacgacgttggagattacaagtataccaagaacaatgtggaggatatgagcgtc 357
|||||||||||| | || |||||||||||||||||| | |||| ||||||||||||| ||
Sbjct: 660 ctcctgcacgacatcggtgattacaagtataccaaggataatgcggaggatatgagcatc 601
Query: 358 gttgagatgtttcttcaagaggtaggattggatgaaggccaaaaggatgaaatagtggca 417
|| | | ||||||| |||||| || | || || || || ||||| |||||||||||
Sbjct: 600 gtcaaaaggtttcttggagaggtgggtctcgaggagggacagaaggaggaaatagtggcc 541
Query: 418 attattaaggggatggggttcaaaaatgaagtttcaaataaatctattgttgagcccact 477
||||||| |||||||| ||||||||||| |||||||| || || || ||| |||||
Sbjct: 540 attattacagggatgggattcaaaaatgaggtttcaaagaagcttaatgcagagaccact 481
Query: 478 cttgaatttgcaattgtacaagatgcagatcgcctggatgcaattggggcaattggtatt 537
||||| |||||||| || |||||||||||||| |||||||||||||| || ||||| ||
Sbjct: 480 cttgagtttgcaatcgtgcaagatgcagatcgtctggatgcaattggtgcgattggcgtt 421
Query: 538 gcaagatgttttacatatggtggtagcaagaacagcgcattacatgatcctagaattctg 597
|||||||||||||||||||| || ||||||||||| ||||| |||||||||| | ||
Sbjct: 420 gcaagatgttttacatatggagggagcaagaacagtgcattgcatgatcctaacgtactt 361
Query: 598 ccacgtgatagcttgtcgaaggaaaagtacatgtccaaggaagagaagcagacatcaatc 657
|| || |||| ||||| ||||| ||||||||||||||||| ||||| || ||||||||
Sbjct: 360 ccgcgggataatttgtcaaaggagaagtacatgtccaaggaggagaaacaaacatcaatt 301
Query: 658 aatcattttcatgagaagctttttaaactgaaggacatgatgaagacagaggccgggaaa 717
|||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 300 aatcatttccatgagaagctttttaagttgaaggacatgatgaagacagaggctgggaaa 241
Query: 718 aggagagctgagaaaaggcataggttcatggaggaatttgtggctgaattctacgaagag 777
| |||||| ||||||||||| | |||||||||| ||||||||||||||||| ||||||
Sbjct: 240 aagagagcagagaaaaggcacaagttcatggagacttttgtggctgaattctatgaagag 181
Query: 778 tggagtggcagggcttgaggttgaacaaccag 809
|||||||||||||||||| ||||| |||||||
Sbjct: 180 tggagtggcagggcttgaagttgaccaaccag 149
>gb|AV929739.1|AV929739 AV929739 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16g03 3', mRNA sequence
Length = 637
Score = 377 bits (190), Expect = e-103
Identities = 355/410 (86%)
Strand = Plus / Minus
Query: 400 aaggatgaaatagtggcaattattaaggggatggggttcaaaaatgaagtttcaaataaa 459
||||| ||||||||||| ||||||| |||||||| ||||||||||| |||||||| ||
Sbjct: 540 aaggaggaaatagtggccattattacagggatgggattcaaaaatgaggtttcaaagaag 481
Query: 460 tctattgttgagcccactcttgaatttgcaattgtacaagatgcagatcgcctggatgca 519
|| || ||| |||||||||| |||||||| || |||||||||||||| |||||||||
Sbjct: 480 cttaatgcagagaccactcttgagtttgcaatcgtgcaagatgcagatcgtctggatgca 421
Query: 520 attggggcaattggtattgcaagatgttttacatatggtggtagcaagaacagcgcatta 579
||||| || ||||| |||||||||||||||||||||| || ||||||||||| |||||
Sbjct: 420 attggtgcgattggcgttgcaagatgttttacatatggagggagcaagaacagtgcattg 361
Query: 580 catgatcctagaattctgccacgtgatagcttgtcgaaggaaaagtacatgtccaaggaa 639
|||||||||| | || || || |||| ||||| ||||| |||||||||||||||||
Sbjct: 360 catgatcctaacgtacttccgcgggataatttgtcaaaggagaagtacatgtccaaggag 301
Query: 640 gagaagcagacatcaatcaatcattttcatgagaagctttttaaactgaaggacatgatg 699
||||| || |||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 300 gagaaacaaacatcaattaatcatttccatgagaagctttttaagttgaaggacatgatg 241
Query: 700 aagacagaggccgggaaaaggagagctgagaaaaggcataggttcatggaggaatttgtg 759
||||||||||| ||||||| |||||| ||||||||||| | |||||||||| ||||||
Sbjct: 240 aagacagaggctgggaaaaagagagcagagaaaaggcacaagttcatggagacttttgtg 181
Query: 760 gctgaattctacgaagagtggagtggcagggcttgaggttgaacaaccag 809
||||||||||| |||||||||||||||||||||||| ||||| |||||||
Sbjct: 180 gctgaattctatgaagagtggagtggcagggcttgaagttgaccaaccag 131
>gb|AL500012.1|AL500012 AL500012 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK04H18r 3', mRNA sequence
Length = 623
Score = 287 bits (145), Expect = 4e-076
Identities = 296/341 (86%), Gaps = 4/341 (1%)
Strand = Plus / Minus
Query: 473 ccactcttgaatttgcaatt-gtacaagatgcagatcgcct-ggat-gcaattggggca- 528
|||||||||| ||||||||| || ||||||||| |||| || |||| |||||||| ||
Sbjct: 546 ccactcttgagtttgcaattcgtgcaagatgcaaatcgtcttggattgcaattggtgcgg 487
Query: 529 attggtattgcaagatgttttacatatggtggtagcaagaacagcgcattacatgatcct 588
||||| |||||||||||||||||||||| || ||||||||||| ||||| |||||||||
Sbjct: 486 attggcgttgcaagatgttttacatatggagggagcaagaacagtgcattgcatgatcct 427
Query: 589 agaattctgccacgtgatagcttgtcgaaggaaaagtacatgtccaaggaagagaagcag 648
| | || || || |||| ||||| ||||| ||||||||||||||||| ||||| ||
Sbjct: 426 aacgtacttccgcgggataatttgtcaaaggagaagtacatgtccaaggaggagaaacaa 367
Query: 649 acatcaatcaatcattttcatgagaagctttttaaactgaaggacatgatgaagacagag 708
|||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 366 acatcaattaatcatttccatgagaagctttttaagttgaaggacatgatgaagacagag 307
Query: 709 gccgggaaaaggagagctgagaaaaggcataggttcatggaggaatttgtggctgaattc 768
|| ||||||| |||||| ||||||||||| | |||||||||| |||||||||||||||
Sbjct: 306 gctgggaaaaagagagcagagaaaaggcacaagttcatggagacttttgtggctgaattc 247
Query: 769 tacgaagagtggagtggcagggcttgaggttgaacaaccag 809
|| |||||||||||||||||||||||| ||||| |||||||
Sbjct: 246 tatgaagagtggagtggcagggcttgaagttgaccaaccag 206
>gb|CA012379.1|CA012379 HT05E07r HT Hordeum vulgare subsp. vulgare cDNA clone HT05E07
5-PRIME, mRNA sequence
Length = 379
Score = 270 bits (136), Expect = 9e-071
Identities = 307/364 (84%)
Strand = Plus / Plus
Query: 151 gaggagctggtggagagggagatgggcgggcgcgatgcctcccacgacgccgcgcacgcg 210
|||||||| ||||||||||||||| |||||||||| ||||||||||||||||| |||||
Sbjct: 16 gaggagctagtggagagggagatgagcgggcgcgacgcctcccacgacgccgctcacgca 75
Query: 211 ctccgcgtccgagaccttgcgctctcgctcgcagccgaagagggcctctccgctcccgac 270
||||||||||| ||||| |||||||| ||||| ||||| ||||| ||||| | || |||
Sbjct: 76 ctccgcgtccgggacctcgcgctctccctcgccgccgagcagggcgtctcctccccggac 135
Query: 271 cgcctcctcaccgtggaactggccgctctcctgcacgacgttggagattacaagtatacc 330
|||||||||| |||||||||||| || |||||||||||| | || |||||||||||||||
Sbjct: 136 cgcctcctcatcgtggaactggctgcactcctgcacgacatcggtgattacaagtatacc 195
Query: 331 aagaacaatgtggaggatatgagcgtcgttgagatgtttcttcaagaggtaggattggat 390
||| | |||| ||||||||||||| |||| | | ||||||| |||||| || | ||
Sbjct: 196 aaggataatgcggaggatatgagcatcgtcaaaaggtttcttggagaggtgggtctcgag 255
Query: 391 gaaggccaaaaggatgaaatagtggcaattattaaggggatggggttcaaaaatgaagtt 450
|| || || ||||| ||||||||||| ||||||| |||||||| ||||||||||| |||
Sbjct: 256 gagggacagaaggaggaaatagtggccattattacagggatgggattcaaaaatgaggtt 315
Query: 451 tcaaataaatctattgttgagcccactcttgaatttgcaattgtacaagatgcagatcgc 510
||||| || || || ||| |||||||||| |||||||| || ||||||||||||||
Sbjct: 316 tcaaagaagcttaatgcagagaccactcttgagtttgcaatcgtgcaagatgcagatcgt 375
Query: 511 ctgg 514
||||
Sbjct: 376 ctgg 379
>gb|AL450843.1|AL450843 AL450843 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK04H18u 5', mRNA sequence
Length = 645
Score = 252 bits (127), Expect = 2e-065
Identities = 281/331 (84%), Gaps = 1/331 (0%)
Strand = Plus / Plus
Query: 125 aaatggcggcggcggtgcggcgagcggaggagctggtggagagggagatgggcgggcgcg 184
||||| |||||||||||||| | || |||||||| ||||||||||||||| |||||||||
Sbjct: 39 aaatgacggcggcggtgcggtgtgccgaggagctagtggagagggagatgagcgggcgcg 98
Query: 185 atgcctcccacgacgccgcgcacgcgctccgcgtccgagaccttgcgctctcgctcgcag 244
| ||||||||||||||||| ||| | ||||||||||| ||||| |||||||| ||||| |
Sbjct: 99 acgcctcccacgacgccgctcac-cactccgcgtccgggacctcgcgctctccctcgccg 157
Query: 245 ccgaagagggcctctccgctcccgaccgcctcctcaccgtggaactggccgctctcctgc 304
|||| ||||| ||||| | || ||||||||||||| |||||||||||| || |||||||
Sbjct: 158 ccgagcagggcgtctcctccccggaccgcctcctcatcgtggaactggctgcactcctgc 217
Query: 305 acgacgttggagattacaagtataccaagaacaatgtggaggatatgagcgtcgttgaga 364
||||| | || |||||||||||||||||| | |||| ||||||||||||| |||| | |
Sbjct: 218 acgacatcggtgattacaagtataccaaggataatgcggaggatatgagcatcgtcaaaa 277
Query: 365 tgtttcttcaagaggtaggattggatgaaggccaaaaggatgaaatagtggcaattatta 424
||||||| |||||| || | || || || || ||||| ||||||||||| |||||||
Sbjct: 278 ggtttcttggagaggtgggtctcgaggagggacagaaggaggaaatagtggccattatta 337
Query: 425 aggggatggggttcaaaaatgaagtttcaaa 455
|||||||| ||||||||||| ||||||||
Sbjct: 338 cagggatgggattcaaaaatgaggtttcaaa 368
>gb|BI950822.1|BI950822 HVSMEl0023F04f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023F04f, mRNA sequence
Length = 535
Score = 232 bits (117), Expect = 2e-059
Identities = 309/373 (82%)
Strand = Plus / Plus
Query: 282 cgtggaactggccgctctcctgcacgacgttggagattacaagtataccaagaacaatgt 341
|||||||||||| || |||||||||||| | || |||||||||| ||||||| | ||||
Sbjct: 163 cgtggaactggctgcactcctgcacgacatcggtgattacaagtttaccaaggataatgc 222
Query: 342 ggaggatatgagcgtcgttgagatgtttcttcaagaggtaggattggatgaaggccaaaa 401
||||||||||||| |||| | | ||||||| |||||| || | || || || || ||
Sbjct: 223 ggaggatatgagcatcgtcaaaaggtttcttggagaggtgggtctcgaggagggacagaa 282
Query: 402 ggatgaaatagtggcaattattaaggggatggggttcaaaaatgaagtttcaaataaatc 461
||| ||||||||||| ||||||| |||||||| |||||||||||||||||||| ||
Sbjct: 283 ggaggaaatagtggccattattacagggatgggattcaaaaatgaagtttcaaagaagct 342
Query: 462 tattgttgagcccactcttgaatttgcaattgtacaagatgcagatcgcctggatgcaat 521
|| || ||| |||||||||| |||||||| || ||| |||||||||| |||||||||||
Sbjct: 343 taatgcagagaccactcttgagtttgcaatcgtgcaatatgcagatcgtctggatgcaat 402
Query: 522 tggggcaattggtattgcaagatgttttacatatggtggtagcaagaacagcgcattaca 581
||| || ||||| |||||||||||||||||||||| || ||||||||||| ||||| ||
Sbjct: 403 tggtgctattggcgttgcaagatgttttacatatggagggagcaagaacagtgcattgca 462
Query: 582 tgatcctagaattctgccacgtgatagcttgtcgaaggaaaagtacatgtccaaggaaga 641
|||||||| | || || || |||| ||||| ||||| ||||||||||||||||| ||
Sbjct: 463 tgatcctaacgtacttccgcgggataatttgtcaaaggagaagtacatgtccaaggagga 522
Query: 642 gaagcagacatca 654
||| || ||||||
Sbjct: 523 gaaacaaacatca 535
>gb|AV924645.1|AV924645 AV924645 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16g03 5', mRNA sequence
Length = 604
Score = 178 bits (90), Expect = 3e-043
Identities = 163/186 (87%), Gaps = 1/186 (0%)
Strand = Plus / Plus
Query: 125 aaatggcggcggcggtgcggcgagcggagg-agctggtggagagggagatgggcgggcgc 183
||||| |||||||||||||| | || |||| |||| ||||||||||||||| ||||||||
Sbjct: 31 aaatgacggcggcggtgcggtgtgccgaggnagctagtggagagggagatgagcgggcgc 90
Query: 184 gatgcctcccacgacgccgcgcacgcgctccgcgtccgagaccttgcgctctcgctcgca 243
|| ||||||||||||||||| ||||| ||||||||||| ||||| |||||||| |||||
Sbjct: 91 gacgcctcccacgacgccgctcacgcactccgcgtccgggacctcgcgctctccctcgcc 150
Query: 244 gccgaagagggcctctccgctcccgaccgcctcctcaccgtggaactggccgctctcctg 303
||||| ||||| ||||| | || ||||||||||||| |||||||||||| || ||||||
Sbjct: 151 gccgagcagggcgtctcctccccggaccgcctcctcatcgtggaactggctgcactcctg 210
Query: 304 cacgac 309
||||||
Sbjct: 211 cacgac 216
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 155,705
Number of Sequences: 312970
Number of extensions: 155705
Number of successful extensions: 38180
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38135
Number of HSP's gapped (non-prelim): 35
length of query: 1105
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1086
effective length of database: 169,188,109
effective search space: 183738286374
effective search space used: 183738286374
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)