BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAZ3f05.yg.3.1
(1626 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU985234.1|BU985234 HF06I14r HF Hordeum vulgare subsp. v... 539 e-152
gb|BQ469437.1|BQ469437 HM04L06r HM Hordeum vulgare subsp. v... 462 e-128
gb|CA017868.1|CA017868 HV06J10r HV Hordeum vulgare subsp. v... 448 e-124
gb|BF064493.2|BF064493 HV_CEb0015G10f Hordeum vulgare seedl... 442 e-122
gb|AV917216.1|AV917216 AV917216 K. Sato unpublished cDNA li... 325 3e-087
gb|BQ659809.1|BQ659809 HF01M14w HF Hordeum vulgare subsp. v... 319 2e-085
gb|AV920015.1|AV920015 AV920015 K. Sato unpublished cDNA li... 278 6e-073
gb|BI951455.1|BI951455 HVSMEl0025P22f Hordeum vulgare spike... 224 7e-057
gb|BQ661666.1|BQ661666 HM04L06u HM Hordeum vulgare subsp. v... 222 3e-056
gb|CV054336.1|CV054336 BNEL109d2 Barley EST endosperm libra... 141 8e-032
gb|BF630242.2|BF630242 HVSMEb0008H03f Hordeum vulgare seedl... 94 2e-017
gb|BQ664507.1|BQ664507 HV03K06u HV Hordeum vulgare subsp. v... 84 2e-014
gb|CA025062.1|CA025062 HZ51B19r HZ Hordeum vulgare subsp. v... 74 2e-011
gb|BI956134.1|BI956134 HVSMEm0025M11f Hordeum vulgare green... 42 0.057
>gb|BU985234.1|BU985234 HF06I14r HF Hordeum vulgare subsp. vulgare cDNA clone HF06I14
5-PRIME, mRNA sequence
Length = 615
Score = 539 bits (272), Expect = e-152
Identities = 488/560 (87%)
Strand = Plus / Plus
Query: 414 atagttgggcccataccagtagatgatggaaatggaaaagaagtagcaactgaaattgtt 473
||||||||||| ||||||||||| || | ||||||||||||| | |||||||||| ||
Sbjct: 18 atagttgggccaataccagtagacgacgaaaatggaaaagaactttcaactgaaatcatt 77
Query: 474 acaaacatggtgacaaacaaaacattctacactgattccagtggacgtgatttcatcaaa 533
|| | ||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 78 actagcatggcaacaaacaaaacgttttacactgattccagtggacgtgatttcatcaaa 137
Query: 534 aggataagagattatcgatcggagtggaagattgaagtgcaccagcctattgctggaaac 593
|||||| | |||||||| |||||||||||||||||||| |||| ||| |||||||||||
Sbjct: 138 aggatacgggattatcgctcggagtggaagattgaagtaaaccaacctgttgctggaaac 197
Query: 594 tattatcctgttaatcttggcatctatgtggaggatggcagcaaagagctgtctgtactg 653
||||||||| ||||||||||||| |||||||| ||||||| ||||||| ||||| ||||
Sbjct: 198 tattatcctattaatcttggcatttatgtggaagatggcaacaaagagttgtctatactt 257
Query: 654 gtagacaggtcaattggaggttccagtataaaggatggacaaatagagctaatgctacac 713
||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 258 gtagacaggtctgttggaggttcgagcataaaggatggacaaatagagctaatgctacac 317
Query: 714 aggaggctactccatgatgatgggaaaggcgtcgccgaggcgctaaatgaaacagtctgt 773
|||||||||||| |||||||||| || || || || || ||| |||||| |||||||
Sbjct: 318 aggaggctactcaatgatgatggtcgtggtgttgcggaagcactagatgaaaaagtctgt 377
Query: 774 ctcgataagcaatgtgaaggactcattatacaaggaaaatactatgtcaaaatagaccca 833
| ||| | |||||||||||||| |||| |||||||||||||| ||||||| ||||||
Sbjct: 378 ttggatgatcaatgtgaaggactagttattgaaggaaaatactatctcaaaattgaccca 437
Query: 834 caaggagaaggagctcggtggcgtcggacatttggccaggaaatatactcccctctcctt 893
||||| || || ||| |||||||||| |||||||| |||||| | ||||||||||| |||
Sbjct: 438 caaggtgacggggctaggtggcgtcgtacatttggtcaggaactgtactcccctcttctt 497
Query: 894 cttgctttcacagagcaggatggaggcaactgggcgaattcacatgttgcaaaattctct 953
||||| ||| |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 498 cttgcgttcgcagagcaggatggaggcaactgggcgaattcacatgtttcatctttctct 557
Query: 954 gcgatggattcaacttacag 973
|| |||||| ||||||||||
Sbjct: 558 gcaatggatccaacttacag 577
>gb|BQ469437.1|BQ469437 HM04L06r HM Hordeum vulgare subsp. vulgare cDNA clone HM04L06
5-PRIME, mRNA sequence
Length = 618
Score = 462 bits (233), Expect = e-128
Identities = 486/569 (85%), Gaps = 1/569 (0%)
Strand = Plus / Plus
Query: 63 ctcaaggaagtgaaagtagtaatctacaagttggtcaaggcaacttgaaacttcaatata 122
|||| |||||| |||||| || || |||||||| ||||| | |||||||||||||||
Sbjct: 51 ctcagggaagtaaaagtacgaacctgcaagttgggcaagggtatttgaaacttcaatatg 110
Query: 123 atgaagctggaaaattatccctgtactccgatagtaagactatggttcaagcaaactttg 182
||| ||||||| |||||||| ||||||||||| |||||| |||| ||||||| || |
Sbjct: 111 atgcagctggagcattatcccactactccgatagcaagactcgggttgaagcaaatttcg 170
Query: 183 agcagaaatacaagtattatattggacaggatggaaatggaagtgatcctcaggcttctg 242
||||||| ||||||||||| | ||||| |||||| | |||| |||||||||||||||||
Sbjct: 171 agcagaagtacaagtattacgtaggacaagatggatacggaaatgatcctcaggcttctg 230
Query: 243 gagcatacatattccgccctaatggcacagttccaatcagtactgatgggcaggtttctc 302
|||| |||||||| |||||||| | | ||||| |||| |||||||| |||||| |||
Sbjct: 231 gagcgtacatatttcgccctaaggacgtcgttcctatcaaaactgatggtcaggttcctc 290
Query: 303 tcacagttctgcgtgggcccatattggatgaagtgcaccagcagataaattcatggattt 362
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 291 ccatgattctgcgtgggcccatattggatgaagtgcaccagcagattaattcatggatat 350
Query: 363 atcagattaccaggcgtttacaaggagaaggactttttggaaactgaatttatagttggg 422
||||||| || || |||||||||| ||||||| | |||||||||| || |||||||||
Sbjct: 351 atcagatcactaga-gtttacaagggaaaggactatgtggaaactgagttcatagttggg 409
Query: 423 cccataccagtagatgatggaaatggaaaagaagtagcaactgaaattgttacaaacatg 482
|| ||||||||||| || | ||||||||||||| | |||||||||| |||| | ||||
Sbjct: 410 ccaataccagtagacgacgaaaatggaaaagaactttcaactgaaatcattactagcatg 469
Query: 483 gtgacaaacaaaacattctacactgattccagtggacgtgatttcatcaaaaggataaga 542
| ||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 470 gcaacaaacaaaacgttttacactgattccagtggacgtgatttcatcaaaaggatacgg 529
Query: 543 gattatcgatcggagtggaagattgaagtgcaccagcctattgctggaaactattatcct 602
|||||||| |||||||||||||||||||| |||| ||| ||||||||||||||||||||
Sbjct: 530 gattatcgctcggagtggaagattgaagtaaaccaacctgttgctggaaactattatcct 589
Query: 603 gttaatcttggcatctatgtggaggatgg 631
||||||||||||| |||||||| |||||
Sbjct: 590 attaatcttggcatttatgtggaagatgg 618
>gb|CA017868.1|CA017868 HV06J10r HV Hordeum vulgare subsp. vulgare cDNA clone HV06J10
5-PRIME, mRNA sequence
Length = 500
Score = 448 bits (226), Expect = e-124
Identities = 418/482 (86%)
Strand = Plus / Plus
Query: 414 atagttgggcccataccagtagatgatggaaatggaaaagaagtagcaactgaaattgtt 473
||||||||||| ||||||||||| || | ||||||||||||| | |||||||||| ||
Sbjct: 19 atagttgggccaataccagtagacgacgaaaatggaaaagaactttcaactgaaatcatt 78
Query: 474 acaaacatggtgacaaacaaaacattctacactgattccagtggacgtgatttcatcaaa 533
|| | ||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 79 actagcatggcaacaaacaaaacgttttacactgattccagtggacgtgatttcatcaaa 138
Query: 534 aggataagagattatcgatcggagtggaagattgaagtgcaccagcctattgctggaaac 593
|||||| | |||||||| |||||||||||||||||||| |||| ||| |||||||||||
Sbjct: 139 aggatacgggattatcgctcggagtggaagattgaagtaaaccaacctgttgctggaaac 198
Query: 594 tattatcctgttaatcttggcatctatgtggaggatggcagcaaagagctgtctgtactg 653
||||||||| ||||||||||||| |||||||| ||||||| ||||||| ||||| ||||
Sbjct: 199 tattatcctattaatcttggcatttatgtggaagatggcaacaaagagttgtctatactt 258
Query: 654 gtagacaggtcaattggaggttccagtataaaggatggacaaatagagctaatgctacac 713
||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 259 gtagacaggtctgttggaggttcgagcataaaggatggacaaatagagctaatgctacac 318
Query: 714 aggaggctactccatgatgatgggaaaggcgtcgccgaggcgctaaatgaaacagtctgt 773
|||||||||||| |||||||||| || || || || || ||| |||||| |||||||
Sbjct: 319 aggaggctactcaatgatgatggtcgtggtgttgcggaagcactagatgaaaaagtctgt 378
Query: 774 ctcgataagcaatgtgaaggactcattatacaaggaaaatactatgtcaaaatagaccca 833
| ||| | |||||||||||||| |||| |||||||||||||| ||||||| ||||||
Sbjct: 379 ttggatgatcaatgtgaaggactagttattgaaggaaaatactatctcaaaattgaccca 438
Query: 834 caaggagaaggagctcggtggcgtcggacatttggccaggaaatatactcccctctcctt 893
||||| || || ||| |||||||||| |||||||| |||||| | ||||||||||| |||
Sbjct: 439 caaggtgacggggctaggtggcgtcgtacatttggtcaggaactgtactcccctcttctt 498
Query: 894 ct 895
||
Sbjct: 499 ct 500
>gb|BF064493.2|BF064493 HV_CEb0015G10f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0015G10f, mRNA sequence
Length = 806
Score = 442 bits (223), Expect = e-122
Identities = 517/615 (84%)
Strand = Plus / Plus
Query: 443 aaatggaaaagaagtagcaactgaaattgttacaaacatggtgacaaacaaaacattcta 502
||||||||||||| | |||||||||| |||| | ||||| ||||||||||| || ||
Sbjct: 4 aaatggaaaagaactttcaactgaaatcattactagcatggcaacaaacaaaacgtttta 63
Query: 503 cactgattccagtggacgtgatttcatcaaaaggataagagattatcgatcggagtggaa 562
||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||
Sbjct: 64 cactgattccagtggacgtgatttcatcaaaaggatacgggattatcgctcggagtggaa 123
Query: 563 gattgaagtgcaccagcctattgctggaaactattatcctgttaatcttggcatctatgt 622
||||||||| |||| ||| |||||||||||||||||||| ||||||||||||| |||||
Sbjct: 124 gattgaagtaaaccaacctgttgctggaaactattatcctattaatcttggcatttatgt 183
Query: 623 ggaggatggcagcaaagagctgtctgtactggtagacaggtcaattggaggttccagtat 682
||| ||||||| ||||||| ||||| |||| | ||||||||| |||||||||| || ||
Sbjct: 184 ggaagatggcaacaaagagttgtctatacttgcagacaggtctgttggaggttcgagcat 243
Query: 683 aaaggatggacaaatagagctaatgctacacaggaggctactccatgatgatgggaaagg 742
|||||||||||||||| |||| |||||||||| |||||||||| |||||||||| ||
Sbjct: 244 aaaggatggacaaatatagcttatgctacacatgaggctactcaatgatgatggtcgtgg 303
Query: 743 cgtcgccgaggcgctaaatgaaacagtctgtctcgataagcaatgtgaaggactcattat 802
|| || || || |||||||||| ||||||| ||| | |||||||||||||| ||||
Sbjct: 304 tgttgcggaagcactaaatgaaaaagtctgttcggatgatcaatgtgaaggactacttat 363
Query: 803 acaaggaaaatactatgtcaaaatagacccacaaggagaaggagctcggtggcgtcggac 862
|||||||||||||| | ||||| ||||||||||| || || ||| ||||||||| ||
Sbjct: 364 tgaaggaaaatactatcttaaaattgacccacaaggtgacggggctaggtggcgtcctac 423
Query: 863 atttggccaggaaatatactcccctctccttcttgctttcacagagcaggatggaggcaa 922
||| || || ||| | ||||||||||| |||||||| ||| ||||||| |||||||||||
Sbjct: 424 attgggtcaagaactgtactcccctcttcttcttgcgttctcagagcaagatggaggcaa 483
Query: 923 ctgggcgaattcacatgttgcaaaattctctgcgatggattcaacttacagcttgcctga 982
|||| | |||||||||||| || ||||||| ||||| |||||||||| | ||||
Sbjct: 484 ctggcctaattcacatgtttcatttctctctgcaatggaaccaacttacagtcttcctgt 543
Query: 983 taatgttgcaatgcttacccttcaggagcttgaagatggaagtgttctccttcggtttgc 1042
| || | | ||||||| ||| |||| |||||||| |||||||||||||||||||| ||
Sbjct: 544 aattggtacgttgcttacgcttgaggaacttgaagacggaagtgttctccttcggttggc 603
Query: 1043 tcatctatatgaggc 1057
||| ||||| |||||
Sbjct: 604 tcacctatacgaggc 618
>gb|AV917216.1|AV917216 AV917216 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8p06 5', mRNA sequence
Length = 518
Score = 325 bits (164), Expect = 3e-087
Identities = 420/503 (83%), Gaps = 2/503 (0%)
Strand = Plus / Plus
Query: 703 taatgctacacagg-aggctactccatgatgatgggaaaggcgtcgccgaggcgcta-aa 760
|||||||||||||| ||||||||| |||||||||| || || || || || ||| |
Sbjct: 1 taatgctacacaggnaggctactcaatgatgatggtcgtggtgttgcggaagcactagna 60
Query: 761 tgaaacagtctgtctcgataagcaatgtgaaggactcattatacaaggaaaatactatgt 820
||||| ||||||| | ||| | |||||||||||||| |||| |||||||||||||| |
Sbjct: 61 tgaaaaagtctgtttggatgatcaatgtgaaggactagttattgaaggaaaatactatct 120
Query: 821 caaaatagacccacaaggagaaggagctcggtggcgtcggacatttggccaggaaatata 880
|||||| ||||||||||| || || ||| |||||||||| |||||||| |||||| | ||
Sbjct: 121 caaaattgacccacaaggtgacggggctaggtggcgtcgtacatttggtcaggaactgta 180
Query: 881 ctcccctctccttcttgctttcacagagcaggatggaggcaactgggcgaattcacatgt 940
||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctcccctcttcttcttgcgttcgcagagcaggatggaggcaactgggcgaattcacatgt 240
Query: 941 tgcaaaattctctgcgatggattcaacttacagcttgcctgataatgttgcaatgcttac 1000
| || |||||||| |||||| |||||||||| | ||||| ||||| || |||||||
Sbjct: 241 ttcatctttctctgcaatggatccaacttacagtcttcctgaaaatgtcgcgttgcttac 300
Query: 1001 ccttcaggagcttgaagatggaagtgttctccttcggtttgctcatctatatgaggccgg 1060
||| |||| ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||
Sbjct: 301 gcttgaggaacttgaagatggaagtgttctccttcggttggctcacctatacgaggctgg 360
Query: 1061 ggaggacaaggatctttcgtctttagcgagtatcgacctcaagagagtgttcccggagaa 1120
||| | |||||||| || || | |||||| ||||||||||||| || ||||| || ||
Sbjct: 361 agagcataaggatctctcagctctggcgagtgtcgacctcaagagggtattcccagataa 420
Query: 1121 gaagattggcaaggtcatcgagacaagcttatcggcaaaccaagaacgcgcagccatgga 1180
||| | |||||| | || || |||||| |||| || |||||||| ||||| ||||||||
Sbjct: 421 aaaggtcggcaagataattgaaacaagcctatcagcgaaccaagagcgcgccgccatgga 480
Query: 1181 gaagaagcgtttgaaatggaagg 1203
||||||| | ||||||||||||
Sbjct: 481 gaagaagaggctgaaatggaagg 503
>gb|BQ659809.1|BQ659809 HF01M14w HF Hordeum vulgare subsp. vulgare cDNA clone HF01M14
3-PRIME, mRNA sequence
Length = 656
Score = 319 bits (161), Expect = 2e-085
Identities = 353/417 (84%)
Strand = Plus / Minus
Query: 787 gtgaaggactcattatacaaggaaaatactatgtcaaaatagacccacaaggagaaggag 846
|||||||||| |||| |||||||||||||| ||||||| ||||||||||| || || |
Sbjct: 656 gtgaaggactagttattgaaggaaaatactatctcaaaattgacccacaaggtgacgggg 597
Query: 847 ctcggtggcgtcggacatttggccaggaaatatactcccctctccttcttgctttcacag 906
|| |||||||||| |||||||| |||||| | ||||||||||| |||||||| ||| |||
Sbjct: 596 ctaggtggcgtcgtacatttggtcaggaactgtactcccctcttcttcttgcgttcgcag 537
Query: 907 agcaggatggaggcaactgggcgaattcacatgttgcaaaattctctgcgatggattcaa 966
||||||||||||||||||||||||||||||||||| || |||||||| |||||| |||
Sbjct: 536 agcaggatggaggcaactgggcgaattcacatgtttcatctttctctgcaatggatccaa 477
Query: 967 cttacagcttgcctgataatgttgcaatgcttacccttcaggagcttgaagatggaagtg 1026
||||||| | ||||| ||||| || ||||||| ||| |||| ||||||||||||||||
Sbjct: 476 cttacagtcttcctgaaaatgtcgcgttgcttacgcttgaggaacttgaagatggaagtg 417
Query: 1027 ttctccttcggtttgctcatctatatgaggccggggaggacaaggatctttcgtctttag 1086
||||||||||||| ||||| ||||| ||||| || ||| | |||||||| || || | |
Sbjct: 416 ttctccttcggttggctcacctatacgaggctggagagcataaggatctctcagctctgg 357
Query: 1087 cgagtatcgacctcaagagagtgttcccggagaagaagattggcaaggtcatcgagacaa 1146
||||| ||||||||||||| || ||||| || || ||| | |||||| | || || ||||
Sbjct: 356 cgagtgtcgacctcaagagggtattcccagataaaaaggtcggcaagataattgaaacaa 297
Query: 1147 gcttatcggcaaaccaagaacgcgcagccatggagaagaagcgtttgaaatggaagg 1203
|| |||| || |||||||| ||||||||||||||||||||| | ||||||||||||
Sbjct: 296 gcctatcagcgaaccaagagcgcgcagccatggagaagaagaggctgaaatggaagg 240
Score = 73.8 bits (37), Expect = 2e-011
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 1260 aagctcgtcgttgagctggggccaatggagatccgcacattcatcgtcagctt 1312
||||||||||||||||||| ||| |||||||||||||||||| || |||||||
Sbjct: 183 aagctcgtcgttgagctggcgcccatggagatccgcacattcgtcatcagctt 131
>gb|AV920015.1|AV920015 AV920015 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8p06 3', mRNA sequence
Length = 561
Score = 278 bits (140), Expect = 6e-073
Identities = 317/376 (84%)
Strand = Plus / Minus
Query: 828 gacccacaaggagaaggagctcggtggcgtcggacatttggccaggaaatatactcccct 887
||||||||||| || || ||| |||||||||| |||||||| |||||| | |||||||||
Sbjct: 561 gacccacaaggtgacggggctaggtggcgtcgtacatttggtcaggaactgtactcccct 502
Query: 888 ctccttcttgctttcacagagcaggatggaggcaactgggcgaattcacatgttgcaaaa 947
|| |||||||| ||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 cttcttcttgcgttcgcagagcaggatggaggcaactgggcgaattcacatgtttcatct 442
Query: 948 ttctctgcgatggattcaacttacagcttgcctgataatgttgcaatgcttacccttcag 1007
|||||||| |||||| |||||||||| | ||||| ||||| || ||||||| ||| ||
Sbjct: 441 ttctctgcaatggatccaacttacagtcttcctgaaaatgtcgcgttgcttacgcttgag 382
Query: 1008 gagcttgaagatggaagtgttctccttcggtttgctcatctatatgaggccggggaggac 1067
|| ||||||||||||||||||||||||||||| ||||| ||||| ||||| || ||| |
Sbjct: 381 gaacttgaagatggaagtgttctccttcggttggctcacctatacgaggctggagagcat 322
Query: 1068 aaggatctttcgtctttagcgagtatcgacctcaagagagtgttcccggagaagaagatt 1127
|||||||| || || | |||||| ||||||||||||| || ||||| || || ||| |
Sbjct: 321 aaggatctctcagctctggcgagtgtcgacctcaagagggtattcccagataaaaaggtc 262
Query: 1128 ggcaaggtcatcgagacaagcttatcggcaaaccaagaacgcgcagccatggagaagaag 1187
|||||| | || || |||||| |||| || |||||||| ||||| |||||||||||||||
Sbjct: 261 ggcaagataattgaaacaagcctatcagcgaaccaagagcgcgccgccatggagaagaag 202
Query: 1188 cgtttgaaatggaagg 1203
| ||||||||||||
Sbjct: 201 aggctgaaatggaagg 186
Score = 73.8 bits (37), Expect = 2e-011
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 1260 aagctcgtcgttgagctggggccaatggagatccgcacattcatcgtcagctt 1312
||||||||||||||||||| ||| |||||||||||||||||| || |||||||
Sbjct: 129 aagctcgtcgttgagctggcgcccatggagatccgcacattcgtcatcagctt 77
>gb|BI951455.1|BI951455 HVSMEl0025P22f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0025P22f, mRNA sequence
Length = 523
Score = 224 bits (113), Expect = 7e-057
Identities = 182/205 (88%)
Strand = Plus / Plus
Query: 400 tggaaactgaatttatagttgggcccataccagtagatgatggaaatggaaaagaagtag 459
|||||||||| || ||||||||||| ||||||||||| |||| ||||||||||||| |
Sbjct: 1 tggaaactgagttcatagttgggccaataccagtagacgatgaaaatggaaaagaactgt 60
Query: 460 caactgaaattgttacaaacatggtgacaaacaaaacattctacactgattccagtggac 519
|||||||||| |||| | ||||| ||||||||||| || |||||||||||||||||||
Sbjct: 61 caactgaaatcattactagcatggcaacaaacaaaacgttttacactgattccagtggac 120
Query: 520 gtgatttcatcaaaaggataagagattatcgatcggagtggaagattgaagtgcaccagc 579
|||||||||||||||||||| | |||||||| |||||||||||||||||||| |||| |
Sbjct: 121 gtgatttcatcaaaaggatacgggattatcgctcggagtggaagattgaagtaaaccaac 180
Query: 580 ctattgctggaaactattatcctgt 604
|| ||||||||||||||||||||||
Sbjct: 181 ctgttgctggaaactattatcctgt 205
>gb|BQ661666.1|BQ661666 HM04L06u HM Hordeum vulgare subsp. vulgare cDNA clone HM04L06
3-PRIME, mRNA sequence
Length = 579
Score = 222 bits (112), Expect = 3e-056
Identities = 253/300 (84%)
Strand = Plus / Minus
Query: 904 cagagcaggatggaggcaactgggcgaattcacatgttgcaaaattctctgcgatggatt 963
|||||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct: 573 cagagcaggatggaggcaactgggcgaattcacatgtttcatctttctctgcaatggatc 514
Query: 964 caacttacagcttgcctgataatgttgcaatgcttacccttcaggagcttgaagatggaa 1023
|||||||||| | ||||| ||||| || ||||||| ||| |||| |||||||||||||
Sbjct: 513 caacttacagtcttcctgaaaatgtcgcgttgcttacgcttgaggaacttgaagatggaa 454
Query: 1024 gtgttctccttcggtttgctcatctatatgaggccggggaggacaaggatctttcgtctt 1083
|||||||||||||||| ||||| ||||| ||||| || ||| | |||||||| || ||
Sbjct: 453 gtgttctccttcggttggctcacctatacgaggctggagagcataaggatctctcagctc 394
Query: 1084 tagcgagtatcgacctcaagagagtgttcccggagaagaagattggcaaggtcatcgaga 1143
| |||||| ||||||||||||| || ||||| || || ||| | |||||| | || || |
Sbjct: 393 tggcgagtgtcgacctcaagagggtattcccagataaaaaggtcggcaagataattgaaa 334
Query: 1144 caagcttatcggcaaaccaagaacgcgcagccatggagaagaagcgtttgaaatggaagg 1203
||||| |||| || |||||||| ||||||||||||||||||||| | ||||||||||||
Sbjct: 333 caagcctatcagcgaaccaagagcgcgcagccatggagaagaagaggctgaaatggaagg 274
Score = 73.8 bits (37), Expect = 2e-011
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 1260 aagctcgtcgttgagctggggccaatggagatccgcacattcatcgtcagctt 1312
||||||||||||||||||| ||| |||||||||||||||||| || |||||||
Sbjct: 217 aagctcgtcgttgagctggcgcccatggagatccgcacattcgtcatcagctt 165
>gb|CV054336.1|CV054336 BNEL109d2 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL109d2 5' similar to Zea mays
PCO061004 mRNA sequence
Length = 595
Score = 141 bits (71), Expect = 8e-032
Identities = 155/183 (84%)
Strand = Plus / Plus
Query: 543 gattatcgatcggagtggaagattgaagtgcaccagcctattgctggaaactattatcct 602
|||||||| |||||||||||||||||||| |||| ||| ||||||||||||||||||||
Sbjct: 5 gattatcgctcggagtggaagattgaagtaaaccaacctgttgctggaaactattatcct 64
Query: 603 gttaatcttggcatctatgtggaggatggcagcaaagagctgtctgtactggtagacagg 662
||||||||||||| |||||||| ||||||| ||||||| ||||| |||| ||| ||| |
Sbjct: 65 attaatcttggcatttatgtggaagatggcaacaaagagttgtctatacttgtaaacaag 124
Query: 663 tcaattggaggttccagtataaaggatggacaaatagagctaatgctacacaggaggcta 722
| | | |||||| || |||||||||| |||||||||||| ||| ||||| ||| ||
Sbjct: 125 gctgtggaaggttcgagcttaaaggatggccaaatagagctatggctccacagaaggtta 184
Query: 723 ctc 725
|||
Sbjct: 185 ctc 187
Score = 109 bits (55), Expect = 3e-022
Identities = 136/163 (83%)
Strand = Plus / Plus
Query: 895 ttgctttcacagagcaggatggaggcaactgggcgaattcacatgttgcaaaattctctg 954
|||| ||| ||||||| |||||||||||||| ||||||||||||||| || |||||||
Sbjct: 356 ttgcgttcgcagagcaagatggaggcaactgtgcgaattcacatgtttcatctttctctg 415
Query: 955 cgatggattcaacttacagcttgcctgataatgttgcaatgcttacccttcaggagcttg 1014
|||||||| |||||||||| | ||||| ||||| || ||||||| ||| |||| ||||
Sbjct: 416 cgatggatccaacttacagacttcctgaaaatgtggccttgcttacacttgaggaacttg 475
Query: 1015 aagatggaagtgttctccttcggtttgctcatctatatgaggc 1057
|| || ||| |||||||||||| | ||||| ||||| |||||
Sbjct: 476 aaaatagaaatgttctccttcgcgtggctcacctatacgaggc 518
>gb|BF630242.2|BF630242 HVSMEb0008H03f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0008H03f, mRNA sequence
Length = 491
Score = 93.7 bits (47), Expect = 2e-017
Identities = 116/139 (83%)
Strand = Plus / Plus
Query: 63 ctcaaggaagtgaaagtagtaatctacaagttggtcaaggcaacttgaaacttcaatata 122
|||| |||||| |||||| || || |||||||| ||||| | |||||||||||||||
Sbjct: 343 ctcagggaagtaaaagtacgaacctgcaagttgggcaagggtatttgaaacttcaatatg 402
Query: 123 atgaagctggaaaattatccctgtactccgatagtaagactatggttcaagcaaactttg 182
||| ||||||| |||||||| ||||||||||| |||||| |||| ||||||| || |
Sbjct: 403 atgcagctggagcattatcccactactccgatagcaagactcgggttgaagcaaatttcg 462
Query: 183 agcagaaatacaagtatta 201
||||||| |||||||||||
Sbjct: 463 agcagaagtacaagtatta 481
>gb|BQ664507.1|BQ664507 HV03K06u HV Hordeum vulgare subsp. vulgare cDNA clone HV03K06
3-PRIME, mRNA sequence
Length = 409
Score = 83.8 bits (42), Expect = 2e-014
Identities = 99/118 (83%)
Strand = Plus / Minus
Query: 1086 gcgagtatcgacctcaagagagtgttcccggagaagaagattggcaaggtcatcgagaca 1145
|||||| ||||||||||||| || ||||| || || ||| | |||||| | || || |||
Sbjct: 372 gcgagtgtcgacctcaagagggtattcccagataaaaaggtcggcaagataattgaaaca 313
Query: 1146 agcttatcggcaaaccaagaacgcgcagccatggagaagaagcgtttgaaatggaagg 1203
||| |||| || |||||||| ||||||||||||||||||||| | ||||||||||||
Sbjct: 312 agcctatcagcgaaccaagagcgcgcagccatggagaagaagaggctgaaatggaagg 255
Score = 73.8 bits (37), Expect = 2e-011
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 1260 aagctcgtcgttgagctggggccaatggagatccgcacattcatcgtcagctt 1312
||||||||||||||||||| ||| |||||||||||||||||| || |||||||
Sbjct: 198 aagctcgtcgttgagctggcgcccatggagatccgcacattcgtcatcagctt 146
>gb|CA025062.1|CA025062 HZ51B19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51B19
5-PRIME, mRNA sequence
Length = 508
Score = 73.8 bits (37), Expect = 2e-011
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 1260 aagctcgtcgttgagctggggccaatggagatccgcacattcatcgtcagctt 1312
||||||||||||||||||| ||| |||||||||||||||||| || |||||||
Sbjct: 10 aagctcgtcgttgagctggcgcccatggagatccgcacattcgtcatcagctt 62
>gb|BI956134.1|BI956134 HVSMEm0025M11f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0025M11f, mRNA sequence
Length = 673
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 131 ggaaaattatccctgtactcc 151
|||||||||||||||||||||
Sbjct: 482 ggaaaattatccctgtactcc 462
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 162,627
Number of Sequences: 312970
Number of extensions: 162627
Number of successful extensions: 44469
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44439
Number of HSP's gapped (non-prelim): 26
length of query: 1626
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1607
effective length of database: 169,188,109
effective search space: 271885291163
effective search space used: 271885291163
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)