BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAW3a11.yg.2.1
(969 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK123727.1|CK123727 BES1824105d06 BES1824 Hordeum vulgar... 559 e-158
gb|CV055942.1|CV055942 BNEL12B7 Barley EST endosperm librar... 551 e-155
gb|BJ465104.1|BJ465104 BJ465104 K. Sato unpublished cDNA li... 488 e-136
gb|BG345023.1|BG345023 HVSMEg0018F09f Hordeum vulgare pre-a... 468 e-130
gb|AV837092.1|AV837092 AV837092 K. Sato unpublished cDNA li... 416 e-115
gb|BJ468235.1|BJ468235 BJ468235 K. Sato unpublished cDNA li... 406 e-112
gb|BM372595.2|BM372595 EBpi05_SQ003_G13_R pistil, 8 DPA, no... 369 e-100
gb|AJ432742.1|AJ432742 AJ432742 S00002 Hordeum vulgare subs... 291 2e-077
gb|BU968630.1|BU968630 HB08B19r BC Hordeum vulgare subsp. v... 266 1e-069
gb|AL510176.1|AL510176 AL510176 Hordeum vulgare Barke devel... 262 2e-068
gb|BU969156.1|BU969156 HB10L09r BC Hordeum vulgare subsp. v... 208 3e-052
gb|AV833832.1|AV833832 AV833832 K. Sato unpublished cDNA li... 147 8e-034
gb|BU979822.1|BU979822 HA17H16r HA Hordeum vulgare subsp. v... 125 3e-027
gb|BJ447514.1|BJ447514 BJ447514 K. Sato unpublished cDNA li... 68 6e-010
gb|BJ455274.1|BJ455274 BJ455274 K. Sato unpublished cDNA li... 68 6e-010
gb|CA032787.1|CA032787 HX14D07r HX Hordeum vulgare subsp. v... 68 6e-010
gb|BJ549178.1|BJ549178 BJ549178 K. Sato unpublished cDNA li... 68 6e-010
gb|BJ549963.1|BJ549963 BJ549963 K. Sato unpublished cDNA li... 68 6e-010
gb|BU973760.1|BU973760 HB25O06r BC Hordeum vulgare subsp. v... 52 3e-005
gb|BE060385.2|BE060385 HVSMEg0012C17f Hordeum vulgare pre-a... 50 1e-004
gb|BG343589.1|BG343589 HVSMEg0006H13f Hordeum vulgare pre-a... 50 1e-004
gb|AV916779.1|AV916779 AV916779 K. Sato unpublished cDNA li... 50 1e-004
gb|AV922076.1|AV922076 AV922076 K. Sato unpublished cDNA li... 50 1e-004
gb|CA032293.1|CA032293 HX12J15r HX Hordeum vulgare subsp. v... 50 1e-004
gb|BI956176.1|BI956176 HVSMEm0025O15f Hordeum vulgare green... 46 0.002
gb|BG417087.1|BG417087 HVSMEk0016D06f Hordeum vulgare testa... 46 0.002
gb|BJ467937.1|BJ467937 BJ467937 K. Sato unpublished cDNA li... 44 0.008
gb|BJ467938.1|BJ467938 BJ467938 K. Sato unpublished cDNA li... 44 0.008
gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA,... 44 0.008
gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA li... 42 0.034
gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA li... 42 0.034
gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, ... 42 0.034
gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA,... 42 0.034
gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, ... 40 0.13
gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA li... 40 0.13
gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA li... 40 0.13
gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA li... 40 0.13
gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA li... 40 0.13
gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, ... 40 0.13
gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA,... 40 0.13
gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA li... 40 0.13
>gb|CK123727.1|CK123727 BES1824105d06 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010D065 5-PRIME, mRNA sequence
Length = 786
Score = 559 bits (282), Expect = e-158
Identities = 439/496 (88%)
Strand = Plus / Plus
Query: 86 tgtgggatgttgatcttaatggaaaggtcaatgnnnnngnnnnnncctgtggnnngagtt 145
|||||||||||||||| ||||||| |||||||| | ||||||| |||||
Sbjct: 32 tgtgggatgttgatctgaatggaatggtcaatggtgcagtgtttacctgtggagagagtt 91
Query: 146 ttcaccgttttgacaaatatcttaatttttcaaatccacacattgctcggaactttgatc 205
| |||||||| ||||| || ||||| || |||||||||||||||||||||||||||||||
Sbjct: 92 tccaccgtttcgacaagtaccttaacttctcaaatccacacattgctcggaactttgatc 151
Query: 206 caaatgcatgtggctgggcttatgggatgaacatctttgatctgagggagtggaagaaga 265
| ||||| ||||| ||||||||||||||||||||||||||||||| | | |||||||| |
Sbjct: 152 ctaatgcttgtggttgggcttatgggatgaacatctttgatctgaagcaatggaagaaca 211
Query: 266 aagatattactgggatctaccacaaatggcaaaatatgaatgaagacagggtcctttgga 325
|||||||||| |||||||||||||| |||||||| ||||||||||||||||| |||||||
Sbjct: 212 aagatattaccgggatctaccacaagtggcaaaacatgaatgaagacagggttctttgga 271
Query: 326 agcttgggacacttccgcctggcctcttgaccttctataagttgacgcacccactggaca 385
|||| ||||||||||| ||||||||| |||| ||||| ||| |||||||||| || || |
Sbjct: 272 agctcgggacacttccacctggcctcatgacgttctacaagctgacgcacccccttgata 331
Query: 386 agtcatggcatgttcttggattaggatacaacccaagcattgaccgttcagagatagaca 445
| || |||||||| |||||| ||||||||||||||||||| ||||| |||||||||||||
Sbjct: 332 aatcgtggcatgtccttggactaggatacaacccaagcatcgaccgctcagagatagaca 391
Query: 446 atgctgctgtggttcattacaatgggaacatgaagccatggctggagctagcaatgacca 505
|||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 392 atgctgctgtcgctcattacaatgggaacatgaagccatggctggagctggcaatgacca 451
Query: 506 agtaccgaccatattggaccaagtatatcaagtatgatcacccttacatccgtggatgca 565
||||||||||||| ||||| | |||||| |||||||| ||||||||||||||||||||||
Sbjct: 452 agtaccgaccatactggacaaggtatataaagtatgaccacccttacatccgtggatgca 511
Query: 566 acttgagtgagtagat 581
|| |||||||||||||
Sbjct: 512 acctgagtgagtagat 527
>gb|CV055942.1|CV055942 BNEL12B7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL12B7 5' similar to 68 kDa
protein, mRNA sequence
Length = 616
Score = 551 bits (278), Expect = e-155
Identities = 407/451 (90%)
Strand = Plus / Plus
Query: 131 cctgtggnnngagttttcaccgttttgacaaatatcttaatttttcaaatccacacattg 190
||||||| |||||| |||||||| ||||| || ||||| || ||||||||||||||||
Sbjct: 38 cctgtggagagagtttccaccgtttcgacaagtaccttaacttctcaaatccacacattg 97
Query: 191 ctcggaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctga 250
|||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 98 ctcggaactttgatcctaatgcttgtggttgggcttatgggatgaacatctttgatctga 157
Query: 251 gggagtggaagaagaaagatattactgggatctaccacaaatggcaaaatatgaatgaag 310
| | |||||||| ||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct: 158 agcaatggaagaacaaagatattaccgggatctaccacaagtggcaaaacatgaatgaag 217
Query: 311 acagggtcctttggaagcttgggacacttccgcctggcctcttgaccttctataagttga 370
||||||| ||||||||||| ||||||||||| ||||||||| |||| ||||| ||| |||
Sbjct: 218 acagggttctttggaagctcgggacacttccacctggcctcatgacgttctacaagctga 277
Query: 371 cgcacccactggacaagtcatggcatgttcttggattaggatacaacccaagcattgacc 430
||||||| || || || || |||||||| |||||| ||||||||||||||||||| ||||
Sbjct: 278 cgcacccccttgataaatcgtggcatgtccttggactaggatacaacccaagcatcgacc 337
Query: 431 gttcagagatagacaatgctgctgtggttcattacaatgggaacatgaagccatggctgg 490
| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 338 gctcagagatagacaatgctgctgtcgctcattacaatgggaacatgaagccatggctgg 397
Query: 491 agctagcaatgaccaagtaccgaccatattggaccaagtatatcaagtatgatcaccctt 550
|||| ||||||||||||||||||||||| ||||| | |||||| |||||||| |||||||
Sbjct: 398 agctggcaatgaccaagtaccgaccatactggacaaggtatataaagtatgaccaccctt 457
Query: 551 acatccgtggatgcaacttgagtgagtagat 581
||||||||||||||||| |||||||||||||
Sbjct: 458 acatccgtggatgcaacctgagtgagtagat 488
>gb|BJ465104.1|BJ465104 BJ465104 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37m09 5', mRNA sequence
Length = 598
Score = 488 bits (246), Expect = e-136
Identities = 409/471 (86%)
Strand = Plus / Plus
Query: 54 tgacatagttgtgnnnnnngatttaacagnnntgtgggatgttgatcttaatggaaaggt 113
||||||||||||| ||||| |||| |||||||||||||||| ||||||| |||
Sbjct: 127 tgacatagttgtgcagaaagatttgacaggattgtgggatgttgatctgaatggaatggt 186
Query: 114 caatgnnnnngnnnnnncctgtggnnngagttttcaccgttttgacaaatatcttaattt 173
||||| | ||||||| |||||| |||||||| ||||| || ||||| ||
Sbjct: 187 caatggtgcagtgtttacctgtggagagagtttccaccgtttcgacaagtaccttaactt 246
Query: 174 ttcaaatccacacattgctcggaactttgatccaaatgcatgtggctgggcttatgggat 233
|||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 247 ctcaaatccacacattgctcggaactttgatcctaatgcttgtggttgggcttatgggat 306
Query: 234 gaacatctttgatctgagggagtggaagaagaaagatattactgggatctaccacaaatg 293
||||||||||||||||| | | |||||||| ||||||||||| |||||||||||||| ||
Sbjct: 307 gaacatctttgatctgaagcaatggaagaacaaagatattaccgggatctaccacaagtg 366
Query: 294 gcaaaatatgaatgaagacagggtcctttggaagcttgggacacttccgcctggcctctt 353
|||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||| |
Sbjct: 367 gcaaaacatgaatgaagacagggttctttggaagctcgggacacttccacctggcctcat 426
Query: 354 gaccttctataagttgacgcacccactggacaagtcatggcatgttcttggattaggata 413
||| ||||| ||| |||||||||| || || || || |||||||| |||||| |||||||
Sbjct: 427 gacgttctacaagctgacgcacccccttgataaatcgtggcatgtccttggactaggata 486
Query: 414 caacccaagcattgaccgttcagagatagacaatgctgctgtggttcattacaatgggaa 473
|||||||||||| ||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct: 487 caacccaagcatcgaccgctcagagatagacaatgctgctgtcgctcattacaatgggaa 546
Query: 474 catgaagccatggctggagctagcaatgaccaagtaccgaccatattggac 524
||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 547 catgaagccatggctggagctggcaatgaccaagtaccgaccatactggac 597
>gb|BG345023.1|BG345023 HVSMEg0018F09f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0018F09f, mRNA sequence
Length = 856
Score = 468 bits (236), Expect = e-130
Identities = 335/368 (91%)
Strand = Plus / Plus
Query: 214 tgtggctgggcttatgggatgaacatctttgatctgagggagtggaagaagaaagatatt 273
||||| ||||||||||||||||||||||||||||||| | | |||||||| |||||||||
Sbjct: 4 tgtggttgggcttatgggatgaacatctttgatctgaagcaatggaagaacaaagatatt 63
Query: 274 actgggatctaccacaaatggcaaaatatgaatgaagacagggtcctttggaagcttggg 333
|| |||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||
Sbjct: 64 accgggatctaccacaagtggcaaaacatgaatgaagacagggttctttggaagctcggg 123
Query: 334 acacttccgcctggcctcttgaccttctataagttgacgcacccactggacaagtcatgg 393
|||||||| ||||||||| |||| ||||| ||| |||||||||| || || || || |||
Sbjct: 124 acacttccacctggcctcatgacgttctacaagctgacgcacccccttgataaatcgtgg 183
Query: 394 catgttcttggattaggatacaacccaagcattgaccgttcagagatagacaatgctgct 453
||||| |||||| ||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 184 catgtccttggactaggatacaacccaagcatcgaccgctcagagatagacaatgctgct 243
Query: 454 gtggttcattacaatgggaacatgaagccatggctggagctagcaatgaccaagtaccga 513
|| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 244 gtcgctcattacaatgggaacatgaagccatggctggagctggcaatgaccaagtaccga 303
Query: 514 ccatattggaccaagtatatcaagtatgatcacccttacatccgtggatgcaacttgagt 573
||||| ||||| | |||||| |||||||| |||||||||||||||||||||||| |||||
Sbjct: 304 ccatactggacaaggtatataaagtatgaccacccttacatccgtggatgcaacctgagt 363
Query: 574 gagtagat 581
||||||||
Sbjct: 364 gagtagat 371
>gb|AV837092.1|AV837092 AV837092 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd23f10, mRNA
sequence
Length = 643
Score = 416 bits (210), Expect = e-115
Identities = 297/326 (91%)
Strand = Plus / Minus
Query: 256 tggaagaagaaagatattactgggatctaccacaaatggcaaaatatgaatgaagacagg 315
|||||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct: 636 tggaagaacaaagatattaccgggatctaccacaagtggcaaaacatgaatgaagacagg 577
Query: 316 gtcctttggaagcttgggacacttccgcctggcctcttgaccttctataagttgacgcac 375
|| ||||||||||| ||||||||||| ||||||||| |||| ||||| ||| ||||||||
Sbjct: 576 gttctttggaagctcgggacacttccacctggcctcatgacgttctacaagctgacgcac 517
Query: 376 ccactggacaagtcatggcatgttcttggattaggatacaacccaagcattgaccgttca 435
|| || || || || |||||||| |||||| ||||||||||||||||||| ||||| |||
Sbjct: 516 ccccttgataaatcgtggcatgtccttggactaggatacaacccaagcatcgaccgctca 457
Query: 436 gagatagacaatgctgctgtggttcattacaatgggaacatgaagccatggctggagcta 495
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 456 gagatagacaatgctgctgtcgctcattacaatgggaacatgaagccatggctggagctg 397
Query: 496 gcaatgaccaagtaccgaccatattggaccaagtatatcaagtatgatcacccttacatc 555
||||||||||||||||||||||| ||||| | |||||| |||||||| ||||||||||||
Sbjct: 396 gcaatgaccaagtaccgaccatactggacaaggtatataaagtatgaccacccttacatc 337
Query: 556 cgtggatgcaacttgagtgagtagat 581
|||||||||||| |||||||||||||
Sbjct: 336 cgtggatgcaacctgagtgagtagat 311
>gb|BJ468235.1|BJ468235 BJ468235 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37m09 3', mRNA sequence
Length = 634
Score = 406 bits (205), Expect = e-112
Identities = 289/317 (91%)
Strand = Plus / Minus
Query: 265 aaagatattactgggatctaccacaaatggcaaaatatgaatgaagacagggtcctttgg 324
||||||||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 625 aaagatattaccgggatctaccacaagtggcaaaacatgaatgaagacagggttctttgg 566
Query: 325 aagcttgggacacttccgcctggcctcttgaccttctataagttgacgcacccactggac 384
||||| ||||||||||| ||||||||| |||| ||||| ||| |||||||||| || ||
Sbjct: 565 aagctcgggacacttccacctggcctcatgacgttctacaagctgacgcacccccttgat 506
Query: 385 aagtcatggcatgttcttggattaggatacaacccaagcattgaccgttcagagatagac 444
|| || |||||||| |||||| ||||||||||||||||||| ||||| ||||||||||||
Sbjct: 505 aaatcgtggcatgtccttggactaggatacaacccaagcatcgaccgctcagagatagac 446
Query: 445 aatgctgctgtggttcattacaatgggaacatgaagccatggctggagctagcaatgacc 504
||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 445 aatgctgctgtcgctcattacaatgggaacatgaagccatggctggagctggcaatgacc 386
Query: 505 aagtaccgaccatattggaccaagtatatcaagtatgatcacccttacatccgtggatgc 564
|||||||||||||| ||||| | |||||| |||||||| |||||||||||||||||||||
Sbjct: 385 aagtaccgaccatactggacaaggtatataaagtatgaccacccttacatccgtggatgc 326
Query: 565 aacttgagtgagtagat 581
||| |||||||||||||
Sbjct: 325 aacctgagtgagtagat 309
>gb|BM372595.2|BM372595 EBpi05_SQ003_G13_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_G13 5', mRNA sequence
Length = 523
Score = 369 bits (186), Expect = e-100
Identities = 264/290 (91%)
Strand = Plus / Plus
Query: 292 tggcaaaatatgaatgaagacagggtcctttggaagcttgggacacttccgcctggcctc 351
|||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 2 tggcaaaacatgaatgaagacagggttctttggaagctcgggacacttccacctggcctc 61
Query: 352 ttgaccttctataagttgacgcacccactggacaagtcatggcatgttcttggattagga 411
|||| ||||| ||| |||||||||| || || || || |||||||| |||||| |||||
Sbjct: 62 atgacgttctacaagctgacgcacccccttgataaatcgtggcatgtccttggactagga 121
Query: 412 tacaacccaagcattgaccgttcagagatagacaatgctgctgtggttcattacaatggg 471
|||||||||||||| ||||| ||||||||||||||||||||||| | |||||||||||||
Sbjct: 122 tacaacccaagcatcgaccgctcagagatagacaatgctgctgtcgctcattacaatggg 181
Query: 472 aacatgaagccatggctggagctagcaatgaccaagtaccgaccatattggaccaagtat 531
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| | ||||
Sbjct: 182 aacatgaagccatggctggagctggcaatgaccaagtaccgaccatactggacaaggtat 241
Query: 532 atcaagtatgatcacccttacatccgtggatgcaacttgagtgagtagat 581
|| |||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 242 ataaagtatgaccacccttacatccgtggatgcaacctgagtgagtagat 291
>gb|AJ432742.1|AJ432742 AJ432742 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200078D03F1, mRNA sequence
Length = 447
Score = 291 bits (147), Expect = 2e-077
Identities = 213/235 (90%)
Strand = Plus / Plus
Query: 347 gcctcttgaccttctataagttgacgcacccactggacaagtcatggcatgttcttggat 406
||||| |||| ||||| ||| |||||||||| || || || || |||||||| ||||||
Sbjct: 5 gcctcatgacgttctacaagctgacgcacccccttgataaatcgtggcatgtccttggac 64
Query: 407 taggatacaacccaagcattgaccgttcagagatagacaatgctgctgtggttcattaca 466
||||||||||||||||||| ||||| ||||||||||||||||||||||| | ||||||||
Sbjct: 65 taggatacaacccaagcatcgaccgctcagagatagacaatgctgctgtcgctcattaca 124
Query: 467 atgggaacatgaagccatggctggagctagcaatgaccaagtaccgaccatattggacca 526
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct: 125 atgggaacatgaagccatggctggagctggcaatgaccaagtaccgaccatactggacaa 184
Query: 527 agtatatcaagtatgatcacccttacatccgtggatgcaacttgagtgagtagat 581
|||||| |||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct: 185 ggtatataaagtatgaccacccttacatccgtggatgcaacctgagtgagtagat 239
>gb|BU968630.1|BU968630 HB08B19r BC Hordeum vulgare subsp. vulgare cDNA clone HB08B19
5-PRIME, mRNA sequence
Length = 521
Score = 266 bits (134), Expect = 1e-069
Identities = 253/299 (84%), Gaps = 1/299 (0%)
Strand = Plus / Plus
Query: 54 tgacatagttgtgnnnnnngatttaacagnnntgtgggatgttgatcttaatggaaaggt 113
||||||||||||| ||||| |||| |||||||||||||||| ||||||| |||
Sbjct: 220 tgacatagttgtgcagaaagatttgacaggattgtgggatgttgatctgaatggaatggt 279
Query: 114 caatgnnnnngnnnnnncctgtggnnngagttttcaccgttttgacaaatatcttaattt 173
||||| | ||||||| |||||| |||||||| ||||| || ||||| ||
Sbjct: 280 caatggtgcagtgtttacctgtggagagagtttccaccgtttcgacaagtaccttaactt 339
Query: 174 ttcaaatccacacattgctcggaactttgatccaaatgcatgtggctgggcttatgggat 233
|||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 340 ctcaaatccacacattgctcggaactttgatcctaatgcttgtggttgggcttatgggat 399
Query: 234 gaacatctttgatctgagggagtggaagaagaaagatattactgg-gatctaccacaaat 292
||||||||||||||||| | | |||||||| ||||||||||| || |||||||||||| |
Sbjct: 400 gaacatctttgatctgaagcaatggaagaacaaagatattaccggngatctaccacaagt 459
Query: 293 ggcaaaatatgaatgaagacagggtcctttggaagcttgggacacttccgcctggcctc 351
||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct: 460 ggcaaaacatgaatgaagacagggttctttggaagctcgggacacttccacctggcctc 518
>gb|AL510176.1|AL510176 AL510176 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04C08u 3',
mRNA sequence
Length = 548
Score = 262 bits (132), Expect = 2e-068
Identities = 178/192 (92%), Gaps = 1/192 (0%)
Strand = Plus / Minus
Query: 391 tggcatgttcttggattaggatacaacccaagcattgaccgttcagagatagacaatgct 450
|||||||| |||||| ||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 496 tggcatgtccttggactaggatacaacccaagcatcgaccgctcagagatagacaatgct 437
Query: 451 gct-gtggttcattacaatgggaacatgaagccatggctggagctagcaatgaccaagta 509
||| || | |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 436 gcttgtcgctcattacaatgggaacatgaagccatggctggagctggcaatgaccaagta 377
Query: 510 ccgaccatattggaccaagtatatcaagtatgatcacccttacatccgtggatgcaactt 569
||||||||| ||||| | |||||| |||||||| |||||||||||||||||||||||| |
Sbjct: 376 ccgaccatactggacaaggtatataaagtatgaccacccttacatccgtggatgcaacct 317
Query: 570 gagtgagtagat 581
||||||||||||
Sbjct: 316 gagtgagtagat 305
>gb|BU969156.1|BU969156 HB10L09r BC Hordeum vulgare subsp. vulgare cDNA clone HB10L09
5-PRIME, mRNA sequence
Length = 684
Score = 208 bits (105), Expect = 3e-052
Identities = 237/281 (84%)
Strand = Plus / Plus
Query: 141 gagttttcaccgttttgacaaatatcttaatttttcaaatccacacattgctcggaactt 200
|||||| ||||| |||||||| || || ||||||||||| ||| | ||| | | ||| ||
Sbjct: 338 gagtttccaccgatttgacaagtacctcaatttttcaaacccaaatatttcacagaattt 397
Query: 201 tgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgagggagtggaa 260
|||||| ||||||||||| ||||||||||| ||||| || ||||||||| || |||||
Sbjct: 398 tgatcctaatgcatgtggttgggcttatggaatgaatatgtttgatctggaagaatggaa 457
Query: 261 gaagaaagatattactgggatctaccacaaatggcaaaatatgaatgaagacagggtcct 320
|||||| || ||||||||||||||||| || ||||| || ||||||||| ||||| | ||
Sbjct: 458 gaagaaggacattactgggatctaccataagtggcagaacatgaatgaaaacaggctgct 517
Query: 321 ttggaagcttgggacacttccgcctggcctcttgaccttctataagttgacgcacccact 380
||||| || |||||||| ||||| || ||| |||| ||||| ||| |||||||||| ||
Sbjct: 518 gtggaaactggggacactcccgccaggtctcatgactttctacaagctgacgcaccccct 577
Query: 381 ggacaagtcatggcatgttcttggattaggatacaacccaa 421
|||||| ||||||||||| ||||||||||| ||||||||||
Sbjct: 578 ggacaaatcatggcatgtgcttggattagggtacaacccaa 618
>gb|AV833832.1|AV833832 AV833832 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags20k03, mRNA sequence
Length = 526
Score = 147 bits (74), Expect = 8e-034
Identities = 172/211 (81%), Gaps = 1/211 (0%)
Strand = Plus / Plus
Query: 54 tgacatagttgtgnnnnnngatttaacagnnntgtgggatgttgatcttaatggaaaggt 113
||||||||||||| ||||| |||| |||||||||||||||| ||||||| |||
Sbjct: 316 tgacatagttgtgcagaaagatttgacaggattgtgggatgttgatctgaatggaatggt 375
Query: 114 caatgnnnnngnnnnnncctgtggnnngagttttcaccgttttgacaaatatcttaattt 173
||||| | ||||||| |||||| |||||||| ||||| || ||||| ||
Sbjct: 376 caatggtgcagtgtttacctgtggagagagtttccaccgtttcgacaagtaccttaactt 435
Query: 174 ttcaaatccacacattgctcggaactttgatccaaatgcat-gtggctgggcttatggga 232
|||||||||||||||||||||||||||||||| ||||| | |||| |||||||||||||
Sbjct: 436 ctcaaatccacacattgctcggaactttgatcctaatgcttggtggttgggcttatggga 495
Query: 233 tgaacatctttgatctgagggagtggaagaa 263
|||||||||||||||||| | | ||||||||
Sbjct: 496 tgaacatctttgatctgaagcaatggaagaa 526
>gb|BU979822.1|BU979822 HA17H16r HA Hordeum vulgare subsp. vulgare cDNA clone HA17H16
5-PRIME, mRNA sequence
Length = 554
Score = 125 bits (63), Expect = 3e-027
Identities = 147/175 (84%)
Strand = Plus / Plus
Query: 141 gagttttcaccgttttgacaaatatcttaatttttcaaatccacacattgctcggaactt 200
|||||| ||||| |||||||| || || ||||||||||| ||| | ||| | | ||| ||
Sbjct: 380 gagtttccaccgatttgacaagtacctcaatttttcaaacccaaatatttcacagaattt 439
Query: 201 tgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgagggagtggaa 260
|||||| ||||||||||| ||||||||||| ||||| || ||||||||| || |||||
Sbjct: 440 tgatcctaatgcatgtggttgggcttatggaatgaatatgtttgatctggaagaatggaa 499
Query: 261 gaagaaagatattactgggatctaccacaaatggcaaaatatgaatgaagacagg 315
|||||| || ||||||||||||||||| || ||||| || ||||||||| |||||
Sbjct: 500 gaagaaggacattactgggatctaccataagtggcagaacatgaatgaaaacagg 554
>gb|BJ447514.1|BJ447514 BJ447514 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16a24 5', mRNA sequence
Length = 630
Score = 67.9 bits (34), Expect = 6e-010
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 195 gaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgaggga 254
||||||||||||| ||| ||||| ||||||| ||| |||||||| ||||| |||| |||
Sbjct: 112 gaactttgatccacgtgcttgtggttgggcttttggaatgaacatgtttgacctgaagga 171
Query: 255 gtggaagaag 264
||||||||||
Sbjct: 172 gtggaagaag 181
>gb|BJ455274.1|BJ455274 BJ455274 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16a24 3', mRNA sequence
Length = 565
Score = 67.9 bits (34), Expect = 6e-010
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 195 gaactttgatccaaatgcatgtggctgggcttatgggatgaacatctttgatctgaggga 254
||||||||||||| ||| ||||| ||||||| ||| |||||||| ||||| |||| |||
Sbjct: 458 gaactttgatccacgtgcttgtggttgggcttttggaatgaacatgtttgacctgaagga 399
Query: 255 gtggaagaag 264
||||||||||
Sbjct: 398 gtggaagaag 389
>gb|CA032787.1|CA032787 HX14D07r HX Hordeum vulgare subsp. vulgare cDNA clone HX14D07
5-PRIME, mRNA sequence
Length = 529
Score = 67.9 bits (34), Expect = 6e-010
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 203 atccaaatgcatgtggctgggcttatgggatgaacatctttgatct 248
|||| ||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 168 atcctaatgcatgtggctgggcttatggcatgaacttctttgatct 213
>gb|BJ549178.1|BJ549178 BJ549178 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25a14 5', mRNA sequence
Length = 606
Score = 67.9 bits (34), Expect = 6e-010
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 203 atccaaatgcatgtggctgggcttatgggatgaacatctttgatct 248
|||| ||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 443 atcctaatgcatgtggctgggcttatggcatgaacttctttgatct 488
>gb|BJ549963.1|BJ549963 BJ549963 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25a14 3', mRNA sequence
Length = 625
Score = 67.9 bits (34), Expect = 6e-010
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 203 atccaaatgcatgtggctgggcttatgggatgaacatctttgatct 248
|||| ||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 610 atcctaatgcatgtggctgggcttatggcatgaacttctttgatct 565
>gb|BU973760.1|BU973760 HB25O06r BC Hordeum vulgare subsp. vulgare cDNA clone HB25O06
5-PRIME, mRNA sequence
Length = 563
Score = 52.0 bits (26), Expect = 3e-005
Identities = 53/65 (81%)
Strand = Plus / Plus
Query: 54 tgacatagttgtgnnnnnngatttaacagnnntgtgggatgttgatcttaatggaaaggt 113
||||||||||||| ||||| |||| |||||||||||||||| ||||||| |||
Sbjct: 492 tgacatagttgtgcagaaagatttgacaggattgtgggatgttgatctgaatggaatggt 551
Query: 114 caatg 118
|||||
Sbjct: 552 caatg 556
>gb|BE060385.2|BE060385 HVSMEg0012C17f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0012C17f, mRNA sequence
Length = 785
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 209 atgcatgtggctgggcttatgggatgaacatctttgatctg 249
|||||||||||||||||| ||| |||||| | |||||||||
Sbjct: 368 atgcatgtggctgggcttttggaatgaacgtgtttgatctg 408
>gb|BG343589.1|BG343589 HVSMEg0006H13f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006H13f, mRNA sequence
Length = 1018
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 209 atgcatgtggctgggcttatgggatgaacatctttgatctg 249
|||||||||||||||||| ||| |||||| | |||||||||
Sbjct: 368 atgcatgtggctgggcttttggaatgaacgtgtttgatctg 408
>gb|AV916779.1|AV916779 AV916779 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19j21 5', mRNA sequence
Length = 612
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 209 atgcatgtggctgggcttatgggatgaacatctttgatctg 249
|||||||||||||||||| ||| |||||| | |||||||||
Sbjct: 201 atgcatgtggctgggcttttggaatgaacgtgtttgatctg 241
>gb|AV922076.1|AV922076 AV922076 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19j21 3', mRNA sequence
Length = 643
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 209 atgcatgtggctgggcttatgggatgaacatctttgatctg 249
|||||||||||||||||| ||| |||||| | |||||||||
Sbjct: 523 atgcatgtggctgggcttttggaatgaacgtgtttgatctg 483
>gb|CA032293.1|CA032293 HX12J15r HX Hordeum vulgare subsp. vulgare cDNA clone HX12J15
5-PRIME, mRNA sequence
Length = 653
Score = 50.1 bits (25), Expect = 1e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 209 atgcatgtggctgggcttatgggatgaacatctttgatctg 249
|||||||||||||||||| ||| |||||| | |||||||||
Sbjct: 536 atgcatgtggctgggcttttggaatgaacgtgtttgatctg 496
>gb|BI956176.1|BI956176 HVSMEm0025O15f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0025O15f, mRNA sequence
Length = 674
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 447 tgctgctgtggttcattacaatgggaacatgaagccatggctg 489
||||||||| || || ||||||||||||||||| || ||||||
Sbjct: 450 tgctgctgttgtgcactacaatgggaacatgaaaccctggctg 492
>gb|BG417087.1|BG417087 HVSMEk0016D06f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0016D06f, mRNA sequence
Length = 490
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 447 tgctgctgtggttcattacaatgggaacatgaagccatggctg 489
||||||||| || || ||||||||||||||||| || ||||||
Sbjct: 272 tgctgctgttgtgcactacaatgggaacatgaaaccctggctg 314
>gb|BJ467937.1|BJ467937 BJ467937 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30g13 3', mRNA sequence
Length = 703
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 460 cattacaatgggaacatgaagccatggctg 489
||||||||||| ||| ||||||||||||||
Sbjct: 472 cattacaatggaaacttgaagccatggctg 443
>gb|BJ467938.1|BJ467938 BJ467938 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30g14 3', mRNA sequence
Length = 550
Score = 44.1 bits (22), Expect = 0.008
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 460 cattacaatgggaacatgaagccatggctg 489
||||||||||| ||| ||||||||||||||
Sbjct: 440 cattacaatggaaacttgaagccatggctg 411
>gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I06 5', mRNA sequence
Length = 494
Score = 44.1 bits (22), Expect = 0.008
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 948 gagtacctgcccgggcggccgc 969
||||||||||||||||||||||
Sbjct: 412 gagtacctgcccgggcggccgc 433
>gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-30
similar to Cytosolic GA3PDH gene, mRNA sequence
Length = 478
Score = 42.1 bits (21), Expect = 0.034
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 949 agtacctgcccgggcggccgc 969
|||||||||||||||||||||
Sbjct: 270 agtacctgcccgggcggccgc 290
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 950 gtacctgcccgggcggccgc 969
||||||||||||||||||||
Sbjct: 302 gtacctgcccgggcggccgc 283
>gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-108,
mRNA sequence
Length = 530
Score = 42.1 bits (21), Expect = 0.034
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 949 agtacctgcccgggcggccgc 969
|||||||||||||||||||||
Sbjct: 327 agtacctgcccgggcggccgc 347
>gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F09 5', mRNA sequence
Length = 387
Score = 42.1 bits (21), Expect = 0.034
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 949 agtacctgcccgggcggccgc 969
|||||||||||||||||||||
Sbjct: 333 agtacctgcccgggcggccgc 353
>gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I05 5', mRNA sequence
Length = 581
Score = 42.1 bits (21), Expect = 0.034
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 949 agtacctgcccgggcggccgc 969
|||||||||||||||||||||
Sbjct: 499 agtacctgcccgggcggccgc 519
>gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_H07 5', mRNA sequence
Length = 422
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 950 gtacctgcccgggcggccgc 969
||||||||||||||||||||
Sbjct: 341 gtacctgcccgggcggccgc 360
>gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-6,
mRNA sequence
Length = 544
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 950 gtacctgcccgggcggccgc 969
||||||||||||||||||||
Sbjct: 273 gtacctgcccgggcggccgc 254
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 950 gtacctgcccgggcggccgc 969
||||||||||||||||||||
Sbjct: 242 gtacctgcccgggcggccgc 261
>gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-7,
mRNA sequence
Length = 420
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 950 gtacctgcccgggcggccgc 969
||||||||||||||||||||
Sbjct: 29 gtacctgcccgggcggccgc 10
>gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-59
similar to Rubisco small sub-unit gene, mRNA sequence
Length = 491
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 950 gtacctgcccgggcggccgc 969
||||||||||||||||||||
Sbjct: 241 gtacctgcccgggcggccgc 260
>gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-159
similar to putative ABC transporter, mRNA sequence
Length = 339
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 950 gtacctgcccgggcggccgc 969
||||||||||||||||||||
Sbjct: 262 gtacctgcccgggcggccgc 281
>gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F01 5', mRNA sequence
Length = 256
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 950 gtacctgcccgggcggccgc 969
||||||||||||||||||||
Sbjct: 103 gtacctgcccgggcggccgc 84
>gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_L04 5', mRNA sequence
Length = 454
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 950 gtacctgcccgggcggccgc 969
||||||||||||||||||||
Sbjct: 103 gtacctgcccgggcggccgc 84
>gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-21
similar to A. thaliana AtRer1A, Accession No. AY044321,
mRNA sequence
Length = 342
Score = 40.1 bits (20), Expect = 0.13
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 950 gtacctgcccgggcggccgc 969
||||||||||||||||||||
Sbjct: 342 gtacctgcccgggcggccgc 323
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 72,852
Number of Sequences: 312970
Number of extensions: 72852
Number of successful extensions: 19035
Number of sequences better than 0.5: 41
Number of HSP's better than 0.5 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18954
Number of HSP's gapped (non-prelim): 74
length of query: 969
length of database: 175,134,539
effective HSP length: 19
effective length of query: 950
effective length of database: 169,188,109
effective search space: 160728703550
effective search space used: 160728703550
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)