BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAS4c05.yg.2.1
         (318 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BU994139.1|BU994139  HM05O02r HM Hordeum vulgare subsp. v...    44   0.003

>gb|BU994139.1|BU994139 HM05O02r HM Hordeum vulgare subsp. vulgare cDNA clone HM05O02
           5-PRIME, mRNA sequence
          Length = 593

 Score = 44.1 bits (22), Expect = 0.003
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 1   acacctcgctgccgctgccacagatgagggcgtcgaagtcgg 42
           |||| |||||||| || || |||||||| |||||||||||||
Sbjct: 104 acacatcgctgccactaccgcagatgagcgcgtcgaagtcgg 63



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,244
Number of Sequences: 312970
Number of extensions: 21244
Number of successful extensions: 6871
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6870
Number of HSP's gapped (non-prelim): 1
length of query: 318
length of database: 175,134,539
effective HSP length: 18
effective length of query: 300
effective length of database: 169,501,079
effective search space: 50850323700
effective search space used: 50850323700
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)