BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAR2a06.yg.3.1
(612 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL500793.1|AL500793 AL500793 Hordeum vulgare Barke roots... 34 5.1
gb|BF621611.1|BF621611 HVSMEa0011J15f Hordeum vulgare seedl... 34 5.1
gb|BE519834.1|BE519834 HV_CEb0021G11f Hordeum vulgare seedl... 34 5.1
gb|BU988902.1|BU988902 HF19B15r HF Hordeum vulgare subsp. v... 34 5.1
gb|BU988960.1|BU988960 HF19E15r HF Hordeum vulgare subsp. v... 34 5.1
>gb|AL500793.1|AL500793 AL500793 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01O14u 3', mRNA sequence
Length = 654
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 514 cccaaaggggctcaaga 530
|||||||||||||||||
Sbjct: 508 cccaaaggggctcaaga 524
>gb|BF621611.1|BF621611 HVSMEa0011J15f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011J15f, mRNA sequence
Length = 868
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 142 aaaaggggcaggatcta 158
|||||||||||||||||
Sbjct: 442 aaaaggggcaggatcta 458
>gb|BE519834.1|BE519834 HV_CEb0021G11f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0021G11f, mRNA sequence
Length = 627
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 71 tgatgctgccctacgtg 87
|||||||||||||||||
Sbjct: 542 tgatgctgccctacgtg 558
>gb|BU988902.1|BU988902 HF19B15r HF Hordeum vulgare subsp. vulgare cDNA clone HF19B15
5-PRIME, mRNA sequence
Length = 269
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 596 tgctccaccgagaggac 612
|||||||||||||||||
Sbjct: 224 tgctccaccgagaggac 240
>gb|BU988960.1|BU988960 HF19E15r HF Hordeum vulgare subsp. vulgare cDNA clone HF19E15
5-PRIME, mRNA sequence
Length = 538
Score = 34.2 bits (17), Expect = 5.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 596 tgctccaccgagaggac 612
|||||||||||||||||
Sbjct: 225 tgctccaccgagaggac 241
Database: Hordeum_nucl_with_EST.fasta
Posted date: May 2, 2006 2:38 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 48,560
Number of Sequences: 312970
Number of extensions: 48560
Number of successful extensions: 11281
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11276
Number of HSP's gapped (non-prelim): 5
length of query: 612
length of database: 175,134,539
effective HSP length: 19
effective length of query: 593
effective length of database: 169,188,109
effective search space: 100328548637
effective search space used: 100328548637
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)