BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAR1e04.yg.2.1
         (405 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BM375016.1|BM375016  EBem06_SQ002_B13_R embryo, 21 DPA, n...   174   1e-042
gb|BE421314.1|BE421314  HWM008.A07 ITEC HWM Barley Leaf Libr...   155   1e-036
gb|BM370593.2|BM370593  EBro08_SQ004_L01_R root, 3 week, dro...    54   4e-006
gb|BF258844.2|BF258844  HVSMEf0016N07f Hordeum vulgare seedl...    52   1e-005
gb|BF256602.3|BF256602  HVSMEf0010H12f Hordeum vulgare seedl...    52   1e-005
gb|BQ461023.1|BQ461023  HE01H04r HE Hordeum vulgare subsp. v...    52   1e-005
gb|BM370831.2|BM370831  EBro04_SQ002_G23_R root, 3 week, sal...    52   1e-005
gb|BE519775.3|BE519775  HV_CEb0021C20f Hordeum vulgare seedl...    50   6e-005
gb|BF257531.2|BF257531  HVSMEf0013C16f Hordeum vulgare seedl...    44   0.003
gb|CA031878.1|CA031878  HX11G06r HX Hordeum vulgare subsp. v...    42   0.014
gb|BQ468278.1|BQ468278  HP01L22T HP Hordeum vulgare subsp. v...    40   0.054
gb|BQ661894.1|BQ661894  HP01L22w HP Hordeum vulgare subsp. v...    40   0.054
gb|CA003004.1|CA003004  HS09C04r HS Hordeum vulgare subsp. v...    38   0.21 
>gb|BM375016.1|BM375016 EBem06_SQ002_B13_R embryo, 21 DPA, no treatment, cv Optic, EBem06
           Hordeum vulgare subsp. vulgare cDNA clone
           EBem06_SQ002_B13 5', mRNA sequence
          Length = 389

 Score =  174 bits (88), Expect = 1e-042
 Identities = 195/233 (83%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
           |||||||| ||||||||||| ||||||||||||| |||||| || |||||||||||||||
Sbjct: 234 aaccaccctatccacctccatggctacgacttcttcatccttgctgagggcttcggcaac 175

                                                                       
Query: 61  ttcgacgccnnngcggacaccgccagcttcaacatggacgacccgcccatgaggaacacg 120
           ||||| |||    | |||||||| |  |||||| | || ||||| || ||||||||||||
Sbjct: 174 ttcgatgccgccaccgacaccgcaaagttcaacctcgatgacccaccaatgaggaacacg 115

                                                                       
Query: 121 gtgggcgtgccggtcaacggctgggcggtcatccgcttcgtggcggataatcccggggnn 180
           |||||||| || || ||||| ||||| |||||||| ||||| || || || || ||||  
Sbjct: 114 gtgggcgtcccagtgaacgggtgggctgtcatccggttcgtcgctgacaaccctggggtg 55

                                                                
Query: 181 nngctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggc 233
             ||| ||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct: 54  tggctgatgcactgccatctggatgtgcacatcacctggggcctcgccatggc 2
>gb|BE421314.1|BE421314 HWM008.A07 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
           vulgare cDNA clone HWM008.A07, mRNA sequence
          Length = 905

 Score =  155 bits (78), Expect = 1e-036
 Identities = 207/251 (82%), Gaps = 1/251 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaccaccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaac 60
           ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 383 aaccatcccatccacctccacggatacgacttctacatcctcgccgagggcttcggcaac 442

                                                                       
Query: 61  ttcgacgccnnngcggacaccgccagcttcaacatggacgacccgcccatgaggaacacg 120
           | |||||||     |||| ||| ||  |||||| | ||  |||| ||   |||||| || 
Sbjct: 443 tacgacgccgagaaggacgccgacaagttcaacctcgagaacccacctcagaggaatacc 502

                                                                       
Query: 121 gtgggcgtgccggtcaacggctgggcggtcatccgcttcgtggcggataatcccggggnn 180
           ||||  |||||||| |||||||||||||||||||| |||   || || || |||||||  
Sbjct: 503 gtggcggtgccggtgaacggctgggcggtcatccggttccgcgccgacaa-cccgggggt 561

                                                                       
Query: 181 nngctcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgttcctg 240
             | ||||||||||||| || || ||||||||||||||||| || || |||||||| |||
Sbjct: 562 gtggtcatgcactgccatctcgatgtgcacatcacctggggcctggcaatggcgtttctg 621

                      
Query: 241 gtggaggacgg 251
           |||||||||||
Sbjct: 622 gtggaggacgg 632
>gb|BM370593.2|BM370593 EBro08_SQ004_L01_R root, 3 week, drought-stressed, cv Optic, EBro08
           Hordeum vulgare subsp. vulgare cDNA clone
           EBro08_SQ004_L01 5', mRNA sequence
          Length = 655

 Score = 54.0 bits (27), Expect = 4e-006
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                              
Query: 185 tcatgcactgccacctggacgtgcacatcacctggggtctcgccatggcgt 235
           |||||||||||||| ||||||||||| ||| |||||| ||  |||||||||
Sbjct: 393 tcatgcactgccacttggacgtgcacctcagctggggcctgtccatggcgt 443
>gb|BF258844.2|BF258844 HVSMEf0016N07f Hordeum vulgare seedling root EST library HVcDNA0007
           (Etiolated and unstressed) Hordeum vulgare subsp.
           vulgare cDNA clone HVSMEf0016N07f, mRNA sequence
          Length = 965

 Score = 52.0 bits (26), Expect = 1e-005
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 1   aaccaccccatccacctccacggctacgacttct 34
           ||||||||||||||||||||||||| | ||||||
Sbjct: 119 aaccaccccatccacctccacggcttcaacttct 152
>gb|BF256602.3|BF256602 HVSMEf0010H12f Hordeum vulgare seedling root EST library
          HVcDNA0007 (Etiolated and unstressed) Hordeum vulgare
          subsp. vulgare cDNA clone HVSMEf0010H12f, mRNA sequence
          Length = 667

 Score = 52.0 bits (26), Expect = 1e-005
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                            
Query: 1  aaccaccccatccacctccacggctacgacttct 34
          ||||||||||||||||||||||||| | ||||||
Sbjct: 64 aaccaccccatccacctccacggcttcaacttct 97
>gb|BQ461023.1|BQ461023 HE01H04r HE Hordeum vulgare subsp. vulgare cDNA clone HE01H04
           5-PRIME, mRNA sequence
          Length = 463

 Score = 52.0 bits (26), Expect = 1e-005
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 1   aaccaccccatccacctccacggctacgacttct 34
           ||||||||||||||||||||||||| | ||||||
Sbjct: 285 aaccaccccatccacctccacggcttcaacttct 318
>gb|BM370831.2|BM370831 EBro04_SQ002_G23_R root, 3 week, salt-stressed, cv Optic, EBro04
           Hordeum vulgare subsp. vulgare cDNA clone
           EBro04_SQ002_G23 5', mRNA sequence
          Length = 657

 Score = 52.0 bits (26), Expect = 1e-005
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 1   aaccaccccatccacctccacggctacgacttct 34
           ||||||||||||||||||||||||| | ||||||
Sbjct: 88  aaccaccccatccacctccacggcttcaacttct 121
>gb|BE519775.3|BE519775 HV_CEb0021C20f Hordeum vulgare seedling green leaf EST library
           HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
           vulgare cDNA clone HV_CEb0021C20f, mRNA sequence
          Length = 699

 Score = 50.1 bits (25), Expect = 6e-005
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 5   accccatccacctccacggctacgacttctacatcctcgcc 45
           ||||||| |||||||| ||||||||||||| | ||||||||
Sbjct: 635 accccatgcacctccatggctacgacttcttcgtcctcgcc 675
>gb|BF257531.2|BF257531 HVSMEf0013C16f Hordeum vulgare seedling root EST library HVcDNA0007
           (Etiolated and unstressed) Hordeum vulgare subsp.
           vulgare cDNA clone HVSMEf0013C16f, mRNA sequence
          Length = 495

 Score = 44.1 bits (22), Expect = 0.003
 Identities = 49/58 (84%)
 Strand = Plus / Plus

                                                                     
Query: 4   caccccatccacctccacggctacgacttctacatcctcgccgagggcttcggcaact 61
           |||||||| ||| ||||||||||| |||||||| |  |||||   |||||||||||||
Sbjct: 278 caccccatgcacatccacggctaccacttctacgtgttcgccacaggcttcggcaact 335
>gb|CA031878.1|CA031878 HX11G06r HX Hordeum vulgare subsp. vulgare cDNA clone HX11G06
           5-PRIME, mRNA sequence
          Length = 624

 Score = 42.1 bits (21), Expect = 0.014
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 89  tcaacatggacgacccgcccatgaggaacacggtgggcgtg 129
           |||||| ||| ||||||||  ||||||||||||||| ||||
Sbjct: 384 tcaacacggaggacccgccgctgaggaacacggtggtcgtg 424
>gb|BQ468278.1|BQ468278 HP01L22T HP Hordeum vulgare subsp. vulgare cDNA clone HP01L22
           5-PRIME, mRNA sequence
          Length = 238

 Score = 40.1 bits (20), Expect = 0.054
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 261 gatgcagtcactggaggcgc 280
           ||||||||||||||||||||
Sbjct: 172 gatgcagtcactggaggcgc 191
>gb|BQ661894.1|BQ661894 HP01L22w HP Hordeum vulgare subsp. vulgare cDNA clone HP01L22
           3-PRIME, mRNA sequence
          Length = 653

 Score = 40.1 bits (20), Expect = 0.054
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 261 gatgcagtcactggaggcgc 280
           ||||||||||||||||||||
Sbjct: 496 gatgcagtcactggaggcgc 477
>gb|CA003004.1|CA003004 HS09C04r HS Hordeum vulgare subsp. vulgare cDNA clone HS09C04
           5-PRIME, mRNA sequence
          Length = 356

 Score = 38.2 bits (19), Expect = 0.21
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 244 gaggacggcgtcggggaga 262
           |||||||||||||||||||
Sbjct: 289 gaggacggcgtcggggaga 271
  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 35,351
Number of Sequences: 312970
Number of extensions: 35351
Number of successful extensions: 12248
Number of sequences better than  0.5: 13
Number of HSP's better than  0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12227
Number of HSP's gapped (non-prelim): 20
length of query: 405
length of database: 175,134,539
effective HSP length: 18
effective length of query: 387
effective length of database: 169,501,079
effective search space: 65596917573
effective search space used: 65596917573
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)