BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAM14e11.yg.2.1
         (197 letters)

Database: Hordeum_nucl_with_EST.fasta 
           312,970 sequences; 175,134,539 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AV927122.1|AV927122  AV927122 K. Sato unpublished cDNA li...    36   0.39 
gb|BM816852.1|BM816852  HB105C01_SK.ab1 HB Hordeum vulgare s...    36   0.39 
gb|BM443055.2|BM443055  EBro02_SQ002_F14_R root, 3 week, hyd...    36   0.39 
gb|BM443427.2|BM443427  EBro02_SQ005_B11_R root, 3 week, hyd...    36   0.39 
gb|BM370936.2|BM370936  EBro04_SQ002_O15_R root, 3 week, sal...    36   0.39 
gb|BQ762534.1|BQ762534  EBro02_SQ004_M06_R root, 3 week, hyd...    36   0.39 
gb|BQ764948.1|BQ764948  EBca01_SQ005_I08_R carpel, pre-anthe...    36   0.39 

>gb|AV927122.1|AV927122 AV927122 K. Sato unpublished cDNA library, cv. Haruna Nijo second
           leaf stage seedling leaves Hordeum vulgare subsp.
           vulgare cDNA clone basd26n21 5', mRNA sequence
          Length = 596

 Score = 36.2 bits (18), Expect = 0.39
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 59  atccagggccagctcctc 76
           ||||||||||||||||||
Sbjct: 174 atccagggccagctcctc 191



>gb|BM816852.1|BM816852 HB105C01_SK.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
          HB105C01_SK.ab1, mRNA sequence
          Length = 796

 Score = 36.2 bits (18), Expect = 0.39
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                            
Query: 21 atctcctgccttgtgctg 38
          ||||||||||||||||||
Sbjct: 57 atctcctgccttgtgctg 74



>gb|BM443055.2|BM443055 EBro02_SQ002_F14_R root, 3 week, hydroponic grown, low nitrogen, cv
           Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
           EBro02_SQ002_F14 5', mRNA sequence
          Length = 426

 Score = 36.2 bits (18), Expect = 0.39
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 59  atccagggccagctcctc 76
           ||||||||||||||||||
Sbjct: 153 atccagggccagctcctc 170



>gb|BM443427.2|BM443427 EBro02_SQ005_B11_R root, 3 week, hydroponic grown, low nitrogen, cv
           Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
           EBro02_SQ005_B11 5', mRNA sequence
          Length = 484

 Score = 36.2 bits (18), Expect = 0.39
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 112 cgatctcctccttggaca 129
           ||||||||||||||||||
Sbjct: 461 cgatctcctccttggaca 444



>gb|BM370936.2|BM370936 EBro04_SQ002_O15_R root, 3 week, salt-stressed, cv Optic, EBro04
           Hordeum vulgare subsp. vulgare cDNA clone
           EBro04_SQ002_O15 5', mRNA sequence
          Length = 660

 Score = 36.2 bits (18), Expect = 0.39
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 59  atccagggccagctcctc 76
           ||||||||||||||||||
Sbjct: 156 atccagggccagctcctc 173



>gb|BQ762534.1|BQ762534 EBro02_SQ004_M06_R root, 3 week, hydroponic grown, low nitrogen, cv
           Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
           EBro02_SQ004_M06 5', mRNA sequence
          Length = 646

 Score = 36.2 bits (18), Expect = 0.39
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 59  atccagggccagctcctc 76
           ||||||||||||||||||
Sbjct: 159 atccagggccagctcctc 176



>gb|BQ764948.1|BQ764948 EBca01_SQ005_I08_R carpel, pre-anthesis, no treatment, cv Optic,
           EBca01 Hordeum vulgare subsp. vulgare cDNA clone
           EBca01_SQ005_I08 5', mRNA sequence
          Length = 727

 Score = 36.2 bits (18), Expect = 0.39
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 59  atccagggccagctcctc 76
           ||||||||||||||||||
Sbjct: 112 atccagggccagctcctc 129



  Database: Hordeum_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:16 PM
  Number of letters in database: 175,134,539
  Number of sequences in database:  312,970
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 24,116
Number of Sequences: 312970
Number of extensions: 24116
Number of successful extensions: 7391
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7384
Number of HSP's gapped (non-prelim): 7
length of query: 197
length of database: 175,134,539
effective HSP length: 18
effective length of query: 179
effective length of database: 169,501,079
effective search space: 30340693141
effective search space used: 30340693141
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)