BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF31c07.yg.2.1
(352 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA005350.1|CA005350 HU10P11u HU Hordeum vulgare subsp. v... 34 2.9
>gb|CA005350.1|CA005350 HU10P11u HU Hordeum vulgare subsp. vulgare cDNA clone HU10P11
3-PRIME, mRNA sequence
Length = 532
Score = 34.2 bits (17), Expect = 2.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 94 tattagttgaaggagag 110
|||||||||||||||||
Sbjct: 110 tattagttgaaggagag 94
Database: Hordeum_nucl_with_EST.fasta
Posted date: May 2, 2006 2:38 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,905
Number of Sequences: 312970
Number of extensions: 14905
Number of successful extensions: 4666
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4665
Number of HSP's gapped (non-prelim): 1
length of query: 352
length of database: 175,134,539
effective HSP length: 18
effective length of query: 334
effective length of database: 169,501,079
effective search space: 56613360386
effective search space used: 56613360386
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)