BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF11h01.xg.2.1
(328 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU986456.1|BU986456 HF11O19r HF Hordeum vulgare subsp. v... 141 2e-032
gb|CA024809.1|CA024809 HZ50F23r HZ Hordeum vulgare subsp. v... 133 4e-030
gb|AV909171.1|AV909171 AV909171 K. Sato unpublished cDNA li... 50 5e-005
gb|AV911054.1|AV911054 AV911054 K. Sato unpublished cDNA li... 50 5e-005
gb|CA032787.1|CA032787 HX14D07r HX Hordeum vulgare subsp. v... 50 5e-005
gb|BJ544949.1|BJ544949 BJ544949 K. Sato unpublished cDNA li... 50 5e-005
gb|BJ546433.1|BJ546433 BJ546433 K. Sato unpublished cDNA li... 50 5e-005
gb|BJ549963.1|BJ549963 BJ549963 K. Sato unpublished cDNA li... 50 5e-005
gb|CB881764.1|CB881764 HM10N01w HM Hordeum vulgare subsp. v... 50 5e-005
gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA,... 46 7e-004
gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA,... 46 7e-004
gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA,... 46 7e-004
gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA,... 46 7e-004
gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA,... 46 7e-004
gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA,... 46 7e-004
gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, ... 46 7e-004
gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, ... 46 7e-004
gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, ... 46 7e-004
gb|BQ134680.1|BQ134680 LP30153 Lemma/palea-enriched cDNA li... 46 7e-004
gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, ... 46 7e-004
gb|BM376096.2|BM376096 EBma01_SQ002_F11_R maternal, 4 DPA, ... 46 7e-004
gb|BM376175.2|BM376175 EBma01_SQ002_J04_R maternal, 4 DPA, ... 46 7e-004
gb|BM376199.2|BM376199 EBma01_SQ002_K09_R maternal, 4 DPA, ... 46 7e-004
gb|BM376260.2|BM376260 EBma01_SQ002_N09_R maternal, 4 DPA, ... 46 7e-004
gb|BM376261.2|BM376261 EBma01_SQ002_N10_R maternal, 4 DPA, ... 46 7e-004
gb|BM376262.2|BM376262 EBma01_SQ002_N11_R maternal, 4 DPA, ... 46 7e-004
gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA,... 46 7e-004
gb|BM371428.2|BM371428 EBma08_SQ002_L03_R maternal, 28 DPA,... 46 7e-004
gb|BM371400.1|BM371400 EBma08_SQ002_J07_R maternal, 28 DPA,... 42 0.011
gb|BM371413.1|BM371413 EBma08_SQ002_K05_R maternal, 28 DPA,... 42 0.011
gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, ... 42 0.011
gb|BQ134691.1|BQ134691 LP30188 Lemma/palea-enriched cDNA li... 42 0.011
gb|BQ134696.1|BQ134696 LP20015 Lemma/palea-enriched cDNA li... 42 0.011
gb|BQ294513.1|BQ294513 LP10226 Lemma/palea-enriched cDNA li... 42 0.011
gb|BQ294528.1|BQ294528 LP10288 Lemma/palea-enriched cDNA li... 42 0.011
gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA,... 42 0.011
gb|BQ135350.1|BQ135350 LP10104 Lemma/palea-enriched cDNA li... 40 0.043
gb|AJ582221.1|AJ582221 AJ582221 Hordeum vulgare subsp. vulg... 40 0.043
>gb|BU986456.1|BU986456 HF11O19r HF Hordeum vulgare subsp. vulgare cDNA clone HF11O19
5-PRIME, mRNA sequence
Length = 478
Score = 141 bits (71), Expect = 2e-032
Identities = 126/143 (88%), Gaps = 1/143 (0%)
Strand = Plus / Minus
Query: 3 cactgcagcactacggattgcctcagggctgatgcttggattatagccaagacccattac 62
||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 164 cactgcagcaccacggataacctcagggctgatgcttggattatatccaagacccatcac 105
Query: 63 atgccatgacttatccagtggcttggtattgccgtaaaaggacatcagcccagctgttag 122
||||||||||||||| |||||||| |||||||| || || | ||||||||| |||| |||
Sbjct: 104 atgccatgacttatcaagtggcttagtattgccatagaatgtcatcagccctgctggtag 45
Query: 123 aatggatgtaggatcccacagct 145
|| ||||| |||||||| ||||
Sbjct: 44 aacagatgt-ggatcccagagct 23
>gb|CA024809.1|CA024809 HZ50F23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50F23
5-PRIME, mRNA sequence
Length = 154
Score = 133 bits (67), Expect = 4e-030
Identities = 100/111 (90%)
Strand = Plus / Minus
Query: 3 cactgcagcactacggattgcctcagggctgatgcttggattatagccaagacccattac 62
||||||||||| |||||| |||||||||||||||||| |||||| ||||||||||| ||
Sbjct: 114 cactgcagcaccacggataacctcagggctgatgcttgcattatatccaagacccatcac 55
Query: 63 atgccatgacttatccagtggcttggtattgccgtaaaaggacatcagccc 113
|||||||||||||||||||||||| |||||||| || || | |||||||||
Sbjct: 54 atgccatgacttatccagtggcttagtattgccatagaatgtcatcagccc 4
>gb|AV909171.1|AV909171 AV909171 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11o03 5', mRNA sequence
Length = 586
Score = 50.1 bits (25), Expect = 5e-005
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 30 gctgatgcttggattatagccaagacccattacatgccatgacttatccagtggctt 86
|||||||||||||||||| || ||||||| |||||||| || || ||||| |||||
Sbjct: 145 gctgatgcttggattatacccgagacccaggacatgccaagatttgtccagaggctt 89
>gb|AV911054.1|AV911054 AV911054 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11o03 3', mRNA sequence
Length = 527
Score = 50.1 bits (25), Expect = 5e-005
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 30 gctgatgcttggattatagccaagacccattacatgccatgacttatccagtggctt 86
|||||||||||||||||| || ||||||| |||||||| || || ||||| |||||
Sbjct: 383 gctgatgcttggattatacccgagacccaggacatgccaagatttgtccagaggctt 439
>gb|CA032787.1|CA032787 HX14D07r HX Hordeum vulgare subsp. vulgare cDNA clone HX14D07
5-PRIME, mRNA sequence
Length = 529
Score = 50.1 bits (25), Expect = 5e-005
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 30 gctgatgcttggattatagccaagacccattacatgccatgacttatccagtggctt 86
|||||||||||||||||| || ||||||| |||||||| || || ||||| |||||
Sbjct: 394 gctgatgcttggattatacccgagacccaggacatgccaagatttgtccagaggctt 338
>gb|BJ544949.1|BJ544949 BJ544949 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41d13 5', mRNA sequence
Length = 589
Score = 50.1 bits (25), Expect = 5e-005
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 30 gctgatgcttggattatagccaagacccattacatgccatgacttatccagtggctt 86
|||||||||||||||||| || ||||||| |||||||| || || ||||| |||||
Sbjct: 148 gctgatgcttggattatacccgagacccaggacatgccaagatttgtccagaggctt 92
>gb|BJ546433.1|BJ546433 BJ546433 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41d13 3', mRNA sequence
Length = 525
Score = 50.1 bits (25), Expect = 5e-005
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 30 gctgatgcttggattatagccaagacccattacatgccatgacttatccagtggctt 86
|||||||||||||||||| || ||||||| |||||||| || || ||||| |||||
Sbjct: 382 gctgatgcttggattatacccgagacccaggacatgccaagatttgtccagaggctt 438
>gb|BJ549963.1|BJ549963 BJ549963 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25a14 3', mRNA sequence
Length = 625
Score = 50.1 bits (25), Expect = 5e-005
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 30 gctgatgcttggattatagccaagacccattacatgccatgacttatccagtggctt 86
|||||||||||||||||| || ||||||| |||||||| || || ||||| |||||
Sbjct: 384 gctgatgcttggattatacccgagacccaggacatgccaagatttgtccagaggctt 440
>gb|CB881764.1|CB881764 HM10N01w HM Hordeum vulgare subsp. vulgare cDNA clone HM10N01
3-PRIME, mRNA sequence
Length = 535
Score = 50.1 bits (25), Expect = 5e-005
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 30 gctgatgcttggattatagccaagacccattacatgccatgacttatccagtggctt 86
|||||||||||||||||| || ||||||| |||||||| || || ||||| |||||
Sbjct: 432 gctgatgcttggattatacccgagacccaggacatgccaagatttgtccagaggctt 488
>gb|BM371350.1|BM371350 EBma08_SQ002_G09_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_G09 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 7e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 313 gtacctcggccgcgaccacgcta 335
>gb|BM371364.1|BM371364 EBma08_SQ002_H03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_H03 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 7e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 313 gtacctcggccgcgaccacgcta 335
>gb|BM371365.1|BM371365 EBma08_SQ002_H04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_H04 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 7e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 314 gtacctcggccgcgaccacgcta 336
>gb|BM371395.1|BM371395 EBma08_SQ002_J02_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_J02 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 7e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 313 gtacctcggccgcgaccacgcta 335
>gb|BM371412.1|BM371412 EBma08_SQ002_K03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_K03 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 7e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 314 gtacctcggccgcgaccacgcta 336
>gb|BM371462.1|BM371462 EBma08_SQ002_N04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_N04 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 7e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 314 gtacctcggccgcgaccacgcta 336
>gb|BM376006.1|BM376006 EBma01_SQ002_B01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_B01 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 7e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 314 gtacctcggccgcgaccacgcta 336
>gb|BM376095.1|BM376095 EBma01_SQ002_F10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F10 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 7e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 314 gtacctcggccgcgaccacgcta 336
>gb|BM376112.1|BM376112 EBma01_SQ002_G07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_G07 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 7e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 313 gtacctcggccgcgaccacgcta 335
>gb|BQ134680.1|BQ134680 LP30153 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-153
similar to Hexaprenyldihydroxybenzoate
methyltransferase,(S)-scoulerine 9-O-methyltransferase,
mRNA sequence
Length = 255
Score = 46.1 bits (23), Expect = 7e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 180 gtacctcggccgcgaccacgcta 202
>gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F09 5', mRNA sequence
Length = 387
Score = 46.1 bits (23), Expect = 7e-004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 101 gtacctcggccgcgaccacgcta 79
>gb|BM376096.2|BM376096 EBma01_SQ002_F11_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F11 5', mRNA sequence
Length = 399
Score = 46.1 bits (23), Expect = 7e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 348 gtacctcggccgcgaccacgcta 370
>gb|BM376175.2|BM376175 EBma01_SQ002_J04_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_J04 5', mRNA sequence
Length = 393
Score = 46.1 bits (23), Expect = 7e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 314 gtacctcggccgcgaccacgcta 336
>gb|BM376199.2|BM376199 EBma01_SQ002_K09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_K09 5', mRNA sequence
Length = 396
Score = 46.1 bits (23), Expect = 7e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 348 gtacctcggccgcgaccacgcta 370
>gb|BM376260.2|BM376260 EBma01_SQ002_N09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N09 5', mRNA sequence
Length = 392
Score = 46.1 bits (23), Expect = 7e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 313 gtacctcggccgcgaccacgcta 335
>gb|BM376261.2|BM376261 EBma01_SQ002_N10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N10 5', mRNA sequence
Length = 406
Score = 46.1 bits (23), Expect = 7e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 348 gtacctcggccgcgaccacgcta 370
>gb|BM376262.2|BM376262 EBma01_SQ002_N11_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_N11 5', mRNA sequence
Length = 375
Score = 46.1 bits (23), Expect = 7e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 314 gtacctcggccgcgaccacgcta 336
>gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I05 5', mRNA sequence
Length = 581
Score = 46.1 bits (23), Expect = 7e-004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 101 gtacctcggccgcgaccacgcta 79
>gb|BM371428.2|BM371428 EBma08_SQ002_L03_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_L03 5', mRNA sequence
Length = 413
Score = 46.1 bits (23), Expect = 7e-004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 306 gtacctcggccgcgaccacgcta 328
|||||||||||||||||||||||
Sbjct: 334 gtacctcggccgcgaccacgcta 356
>gb|BM371400.1|BM371400 EBma08_SQ002_J07_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_J07 5', mRNA sequence
Length = 379
Score = 42.1 bits (21), Expect = 0.011
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 308 acctcggccgcgaccacgcta 328
|||||||||||||||||||||
Sbjct: 302 acctcggccgcgaccacgcta 322
>gb|BM371413.1|BM371413 EBma08_SQ002_K05_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_K05 5', mRNA sequence
Length = 379
Score = 42.1 bits (21), Expect = 0.011
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 308 acctcggccgcgaccacgcta 328
|||||||||||||||||||||
Sbjct: 302 acctcggccgcgaccacgcta 322
>gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_H07 5', mRNA sequence
Length = 422
Score = 42.1 bits (21), Expect = 0.011
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 308 acctcggccgcgaccacgcta 328
|||||||||||||||||||||
Sbjct: 99 acctcggccgcgaccacgcta 79
>gb|BQ134691.1|BQ134691 LP30188 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-188
similar to Germin, mRNA sequence
Length = 557
Score = 42.1 bits (21), Expect = 0.011
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 308 acctcggccgcgaccacgcta 328
|||||||||||||||||||||
Sbjct: 482 acctcggccgcgaccacgcta 502
>gb|BQ134696.1|BQ134696 LP20015 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-15
similar to S-adenosylmethionine decarboxylase, mRNA
sequence
Length = 430
Score = 42.1 bits (21), Expect = 0.011
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 308 acctcggccgcgaccacgcta 328
|||||||||||||||||||||
Sbjct: 406 acctcggccgcgaccacgcta 426
>gb|BQ294513.1|BQ294513 LP10226 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-226,
mRNA sequence
Length = 587
Score = 42.1 bits (21), Expect = 0.011
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 308 acctcggccgcgaccacgcta 328
|||||||||||||||||||||
Sbjct: 515 acctcggccgcgaccacgcta 535
>gb|BQ294528.1|BQ294528 LP10288 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-288,
mRNA sequence
Length = 310
Score = 42.1 bits (21), Expect = 0.011
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 308 acctcggccgcgaccacgcta 328
|||||||||||||||||||||
Sbjct: 286 acctcggccgcgaccacgcta 306
>gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I06 5', mRNA sequence
Length = 494
Score = 42.1 bits (21), Expect = 0.011
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 308 acctcggccgcgaccacgcta 328
|||||||||||||||||||||
Sbjct: 99 acctcggccgcgaccacgcta 79
>gb|BQ135350.1|BQ135350 LP10104 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-104
similar to Arabidopsis putative tyrosyl-tRNA synthetase,
Accession No. AY075664, mRNA sequence
Length = 427
Score = 40.1 bits (20), Expect = 0.043
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 309 cctcggccgcgaccacgcta 328
||||||||||||||||||||
Sbjct: 356 cctcggccgcgaccacgcta 375
>gb|AJ582221.1|AJ582221 AJ582221 Hordeum vulgare subsp. vulgare 7 d after germination
Hordeum vulgare subsp. vulgare cDNA clone CJP121, mRNA
sequence
Length = 723
Score = 40.1 bits (20), Expect = 0.043
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 305 tgtacctcggccgcgaccacgcta 328
||| |||||||||||||||||||
Sbjct: 56 tgtwmctcggccgcgaccacgcta 33
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 29,751
Number of Sequences: 312970
Number of extensions: 29751
Number of successful extensions: 8133
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8094
Number of HSP's gapped (non-prelim): 39
length of query: 328
length of database: 175,134,539
effective HSP length: 18
effective length of query: 310
effective length of database: 169,501,079
effective search space: 52545334490
effective search space used: 52545334490
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)