BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE40a10.yg.2.1
(709 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE559011.2|BE559011 HV_CEb0022E12f Hordeum vulgare seedl... 280 6e-074
gb|BE215834.2|BE215834 HV_CEb0008J21f Hordeum vulgare seedl... 84 7e-015
gb|CA031522.1|CA031522 HX10D22r HX Hordeum vulgare subsp. v... 84 7e-015
gb|AY177665.1| Hordeum vulgare subsp. vulgare putative call... 84 7e-015
gb|AV836635.1|AV836635 AV836635 K. Sato unpublished cDNA li... 74 7e-012
gb|BU971000.1|BU971000 HB16F02r BC Hordeum vulgare subsp. v... 58 4e-007
gb|BF616755.1|BF616755 HVSMEc0012I18f Hordeum vulgare seedl... 46 0.002
gb|BF627189.2|BF627189 HVSMEb0004D01f Hordeum vulgare seedl... 46 0.002
gb|BG369637.1|BG369637 HVSMEi0025E14f Hordeum vulgare 20 DA... 46 0.002
gb|BJ469639.1|BJ469639 BJ469639 K. Sato unpublished cDNA li... 46 0.002
gb|BJ473076.1|BJ473076 BJ473076 K. Sato unpublished cDNA li... 46 0.002
gb|CA027060.1|CA027060 HZ57M12r HZ Hordeum vulgare subsp. v... 46 0.002
gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA li... 42 0.024
gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA li... 42 0.024
gb|BG310030.1|BG310030 HVSMEc0016B20f Hordeum vulgare seedl... 40 0.096
gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, ... 40 0.096
gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA li... 40 0.096
gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA li... 40 0.096
gb|BM928867.1|BM928867 LP300020 Lemma/palea-enriched cDNA l... 40 0.096
gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA li... 40 0.096
gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA li... 40 0.096
gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, ... 40 0.096
gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, ... 40 0.096
gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA,... 40 0.096
gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA,... 40 0.096
gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA,... 40 0.096
gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA li... 40 0.096
>gb|BE559011.2|BE559011 HV_CEb0022E12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022E12f, mRNA sequence
Length = 730
Score = 280 bits (141), Expect = 6e-074
Identities = 210/233 (90%)
Strand = Plus / Minus
Query: 345 aggagagcaacctcaagcgctttgacaaagtgacttcgagaatagagcctataattttca 404
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct: 291 aggagagcaacctcaagcgctttcacaaagtggcttcgagaatagagcctataattgtca 232
Query: 405 gcaaactttatgtgccgaacaacaaaacctcttccagtagcacgatactttgcaccgcca 464
||||| |||||||| |||||||||||||||| |||||||||||||| ||||||||| |||
Sbjct: 231 gcaaattttatgtggcgaacaacaaaacctcgtccagtagcacgatgctttgcaccacca 172
Query: 465 tgaaggattgttctaccaaagtaatgtgtccttgttccaagcgaaaaggtgaaaaacacc 524
|||||||||||||| ||||| |||||||| || |||||||| |||||||||||||| |
Sbjct: 171 tgaaggattgttctcccaaaataatgtgttctagttccaagtgaaaaggtgaaaaataat 112
Query: 525 gaacagaactggagctgcattgtaataaaactaaaaacagccttcatcagccc 577
|| |||||||| || |||||||| |||||||| |||| ||||||||| |||||
Sbjct: 111 gagcagaactgcagttgcattgtgataaaactgaaaatagccttcattagccc 59
>gb|BE215834.2|BE215834 HV_CEb0008J21f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0008J21f, mRNA sequence
Length = 504
Score = 83.8 bits (42), Expect = 7e-015
Identities = 138/170 (81%)
Strand = Plus / Minus
Query: 351 gcaacctcaagcgctttgacaaagtgacttcgagaatagagcctataattttcagcaaac 410
|||||||| ||| |||| ||||| || ||||| ||||| || | ||||| |||||||||
Sbjct: 335 gcaacctccagccctttcacaaaatggcttcgggaataaagacggtaattctcagcaaac 276
Query: 411 tttatgtgccgaacaacaaaacctcttccagtagcacgatactttgcaccgccatgaagg 470
|| || ||||| || |||||||| || ||||| || | |||||||||||| ||||| ||
Sbjct: 275 ttaatatgccgtaccacaaaacccctaccagttgctctatactttgcacctccatgcagt 216
Query: 471 attgttctaccaaagtaatgtgtccttgttccaagcgaaaaggtgaaaaa 520
||||| | |||||| || || |||||||| ||||| || || ||||||||
Sbjct: 215 attgtgcgaccaaaatagtgagtccttgtcccaagggagaacgtgaaaaa 166
>gb|CA031522.1|CA031522 HX10D22r HX Hordeum vulgare subsp. vulgare cDNA clone HX10D22
5-PRIME, mRNA sequence
Length = 478
Score = 83.8 bits (42), Expect = 7e-015
Identities = 138/170 (81%)
Strand = Plus / Minus
Query: 351 gcaacctcaagcgctttgacaaagtgacttcgagaatagagcctataattttcagcaaac 410
|||||||| ||| |||| ||||| || ||||| ||||| || | ||||| |||||||||
Sbjct: 178 gcaacctccagccctttcacaaaatggcttcgggaataaagacggtaattctcagcaaac 119
Query: 411 tttatgtgccgaacaacaaaacctcttccagtagcacgatactttgcaccgccatgaagg 470
|| || ||||| || |||||||| || ||||| || | |||||||||||| ||||| ||
Sbjct: 118 ttaatatgccgtaccacaaaacccctaccagttgctctatactttgcacctccatgcagt 59
Query: 471 attgttctaccaaagtaatgtgtccttgttccaagcgaaaaggtgaaaaa 520
||||| | |||||| || || |||||||| ||||| || || ||||||||
Sbjct: 58 attgtgcgaccaaaatagtgagtccttgtcccaagggagaacgtgaaaaa 9
>gb|AY177665.1| Hordeum vulgare subsp. vulgare putative callose synthase mRNA,
complete cds
Length = 6180
Score = 83.8 bits (42), Expect = 7e-015
Identities = 138/170 (81%)
Strand = Plus / Minus
Query: 351 gcaacctcaagcgctttgacaaagtgacttcgagaatagagcctataattttcagcaaac 410
|||||||| ||| |||| ||||| || ||||| ||||| || | ||||| |||||||||
Sbjct: 4999 gcaacctccagccctttcacaaaatggcttcgggaataaagacggtaattctcagcaaac 4940
Query: 411 tttatgtgccgaacaacaaaacctcttccagtagcacgatactttgcaccgccatgaagg 470
|| || ||||| || |||||||| || ||||| || | |||||||||||| ||||| ||
Sbjct: 4939 ttaatatgccgtaccacaaaacccctaccagttgctctatactttgcacctccatgcagt 4880
Query: 471 attgttctaccaaagtaatgtgtccttgttccaagcgaaaaggtgaaaaa 520
||||| | |||||| || || |||||||| ||||| || || ||||||||
Sbjct: 4879 attgtgcgaccaaaatagtgagtccttgtcccaagggagaacgtgaaaaa 4830
>gb|AV836635.1|AV836635 AV836635 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd19k01, mRNA
sequence
Length = 644
Score = 73.8 bits (37), Expect = 7e-012
Identities = 103/125 (82%)
Strand = Plus / Minus
Query: 396 taattttcagcaaactttatgtgccgaacaacaaaacctcttccagtagcacgatacttt 455
||||| ||||||||||| || ||||| || |||||||| || ||||| || | |||||||
Sbjct: 612 taattctcagcaaacttaatatgccgtaccacaaaacccctaccagttgctctatacttt 553
Query: 456 gcaccgccatgaaggattgttctaccaaagtaatgtgtccttgttccaagcgaaaaggtg 515
||||| ||||| || ||||| | |||||| || || |||||||| ||||| || || |||
Sbjct: 552 gcacctccatgcagtattgtgcgaccaaaatagtgagtccttgtcccaagggagaacgtg 493
Query: 516 aaaaa 520
|||||
Sbjct: 492 aaaaa 488
>gb|BU971000.1|BU971000 HB16F02r BC Hordeum vulgare subsp. vulgare cDNA clone HB16F02
5-PRIME, mRNA sequence
Length = 380
Score = 58.0 bits (29), Expect = 4e-007
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 438 ccagtagcacgatactttgcaccgccatgaaggattgttctaccaaagtaatg 490
|||||||| |||||||||||||| |||||||| ||||||| ||| |||||||
Sbjct: 322 ccagtagcccgatactttgcaccaccatgaagaattgttcggccatagtaatg 270
>gb|BF616755.1|BF616755 HVSMEc0012I18f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0012I18f, mRNA sequence
Length = 762
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 202 tcttttgccactcgaaaccagaagggttgaa 232
|||| ||||||||||| ||||||||||||||
Sbjct: 348 tcttctgccactcgaacccagaagggttgaa 318
>gb|BF627189.2|BF627189 HVSMEb0004D01f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004D01f, mRNA sequence
Length = 765
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 202 tcttttgccactcgaaaccagaagggttgaa 232
|||| ||||||||||| ||||||||||||||
Sbjct: 115 tcttctgccactcgaacccagaagggttgaa 85
>gb|BG369637.1|BG369637 HVSMEi0025E14f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0025E14f, mRNA sequence
Length = 725
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 202 tcttttgccactcgaaaccagaagggttgaa 232
|||||||||||| ||| ||||||||||||||
Sbjct: 269 tcttttgccactggaacccagaagggttgaa 239
>gb|BJ469639.1|BJ469639 BJ469639 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal27j14 5', mRNA sequence
Length = 604
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 202 tcttttgccactcgaaaccagaagggttgaa 232
|||| ||||||||||| ||||||||||||||
Sbjct: 454 tcttctgccactcgaacccagaagggttgaa 424
>gb|BJ473076.1|BJ473076 BJ473076 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40n15 5', mRNA sequence
Length = 614
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 202 tcttttgccactcgaaaccagaagggttgaa 232
|||| ||||||||||| ||||||||||||||
Sbjct: 465 tcttctgccactcgaacccagaagggttgaa 435
>gb|CA027060.1|CA027060 HZ57M12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ57M12
5-PRIME, mRNA sequence
Length = 384
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 202 tcttttgccactcgaaaccagaagggttgaa 232
|||| ||||||||||| ||||||||||||||
Sbjct: 169 tcttctgccactcgaacccagaagggttgaa 139
>gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-6,
mRNA sequence
Length = 544
Score = 42.1 bits (21), Expect = 0.024
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 261 gcggccgcccgggcaggtaca 241
Score = 40.1 bits (20), Expect = 0.096
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 254 gcggccgcccgggcaggtac 273
>gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA library from gelatinous stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 2-59
similar to Rubisco small sub-unit gene, mRNA sequence
Length = 491
Score = 42.1 bits (21), Expect = 0.024
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 260 gcggccgcccgggcaggtaca 240
>gb|BG310030.1|BG310030 HVSMEc0016B20f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016B20f, mRNA sequence
Length = 715
Score = 40.1 bits (20), Expect = 0.096
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 508 aaaaggtgaaaaacaccgaa 527
||||||||||||||||||||
Sbjct: 703 aaaaggtgaaaaacaccgaa 684
>gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_H07 5', mRNA sequence
Length = 422
Score = 40.1 bits (20), Expect = 0.096
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 360 gcggccgcccgggcaggtac 341
>gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA library from elongation stage
of kernel Hordeum vulgare subsp. vulgare cDNA clone
1-7, mRNA sequence
Length = 420
Score = 40.1 bits (20), Expect = 0.096
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 10 gcggccgcccgggcaggtac 29
>gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA library from elongation stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 1-30
similar to Cytosolic GA3PDH gene, mRNA sequence
Length = 478
Score = 40.1 bits (20), Expect = 0.096
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 283 gcggccgcccgggcaggtac 302
Score = 40.1 bits (20), Expect = 0.096
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 290 gcggccgcccgggcaggtac 271
>gb|BM928867.1|BM928867 LP300020 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-20,
mRNA sequence
Length = 216
Score = 40.1 bits (20), Expect = 0.096
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggtaca 21
||||||||||||||||||||
Sbjct: 212 cggccgcccgggcaggtaca 193
>gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-108,
mRNA sequence
Length = 530
Score = 40.1 bits (20), Expect = 0.096
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 347 gcggccgcccgggcaggtac 328
>gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-159
similar to putative ABC transporter, mRNA sequence
Length = 339
Score = 40.1 bits (20), Expect = 0.096
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 281 gcggccgcccgggcaggtac 262
>gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F01 5', mRNA sequence
Length = 256
Score = 40.1 bits (20), Expect = 0.096
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 84 gcggccgcccgggcaggtac 103
>gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ002_F09 5', mRNA sequence
Length = 387
Score = 40.1 bits (20), Expect = 0.096
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 353 gcggccgcccgggcaggtac 334
>gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I05 5', mRNA sequence
Length = 581
Score = 40.1 bits (20), Expect = 0.096
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 519 gcggccgcccgggcaggtac 500
>gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_I06 5', mRNA sequence
Length = 494
Score = 40.1 bits (20), Expect = 0.096
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 433 gcggccgcccgggcaggtac 414
>gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_L04 5', mRNA sequence
Length = 454
Score = 40.1 bits (20), Expect = 0.096
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 84 gcggccgcccgggcaggtac 103
>gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA library from dough stage of
kernel Hordeum vulgare subsp. vulgare cDNA clone 3-21
similar to A. thaliana AtRer1A, Accession No. AY044321,
mRNA sequence
Length = 342
Score = 40.1 bits (20), Expect = 0.096
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 323 gcggccgcccgggcaggtac 342
Score = 38.2 bits (19), Expect = 0.38
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 330 gcggccgcccgggcaggta 312
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 56,827
Number of Sequences: 312970
Number of extensions: 56827
Number of successful extensions: 13456
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13418
Number of HSP's gapped (non-prelim): 38
length of query: 709
length of database: 175,134,539
effective HSP length: 19
effective length of query: 690
effective length of database: 169,188,109
effective search space: 116739795210
effective search space used: 116739795210
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)