BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE20c02.yg.2.1
(696 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE231065.1|BE231065 HVSMEg0016D19f Hordeum vulgare pre-a... 240 5e-062
gb|BU997130.1|BU997130 HI07A02r HI Hordeum vulgare subsp. v... 222 1e-056
gb|BE196433.2|BE196433 HVSMEh0092E14f Hordeum vulgare 5-45 ... 218 2e-055
gb|BU994352.1|BU994352 HM06L21r HM Hordeum vulgare subsp. v... 172 1e-041
gb|BU978697.1|BU978697 HA14A09r HA Hordeum vulgare subsp. v... 170 4e-041
gb|BF261097.2|BF261097 HVSMEf0023M01f Hordeum vulgare seedl... 157 6e-037
gb|AV913558.1|AV913558 AV913558 K. Sato unpublished cDNA li... 157 6e-037
gb|AV915505.1|AV915505 AV915505 K. Sato unpublished cDNA li... 157 6e-037
gb|AV916601.1|AV916601 AV916601 K. Sato unpublished cDNA li... 157 6e-037
gb|AV916609.1|AV916609 AV916609 K. Sato unpublished cDNA li... 157 6e-037
gb|AV917009.1|AV917009 AV917009 K. Sato unpublished cDNA li... 157 6e-037
gb|AV917011.1|AV917011 AV917011 K. Sato unpublished cDNA li... 157 6e-037
gb|BJ463364.1|BJ463364 BJ463364 K. Sato unpublished cDNA li... 157 6e-037
gb|BJ464778.1|BJ464778 BJ464778 K. Sato unpublished cDNA li... 157 6e-037
gb|BJ465257.1|BJ465257 BJ465257 K. Sato unpublished cDNA li... 157 6e-037
gb|BQ764926.1|BQ764926 EBca01_SQ005_E07_R carpel, pre-anthe... 157 6e-037
gb|BU988606.1|BU988606 HF18C11r HF Hordeum vulgare subsp. v... 149 1e-034
gb|CA026968.1|CA026968 HZ57H22r HZ Hordeum vulgare subsp. v... 143 9e-033
gb|AV912838.1|AV912838 AV912838 K. Sato unpublished cDNA li... 133 8e-030
gb|BJ464115.1|BJ464115 BJ464115 K. Sato unpublished cDNA li... 119 1e-025
gb|AV914116.1|AV914116 AV914116 K. Sato unpublished cDNA li... 113 8e-024
gb|CK122337.1|CK122337 BES1824102p02 BES1824 Hordeum vulgar... 105 2e-021
gb|AV916387.1|AV916387 AV916387 K. Sato unpublished cDNA li... 101 3e-020
gb|BU997151.1|BU997151 HI07B06r HI Hordeum vulgare subsp. v... 101 3e-020
gb|BJ462621.1|BJ462621 BJ462621 K. Sato unpublished cDNA li... 100 1e-019
gb|BE195060.3|BE195060 HVSMEh0088D01f Hordeum vulgare 5-45 ... 88 5e-016
gb|AV914017.1|AV914017 AV914017 K. Sato unpublished cDNA li... 82 3e-014
gb|AV915968.1|AV915968 AV915968 K. Sato unpublished cDNA li... 72 3e-011
gb|BJ462494.1|BJ462494 BJ462494 K. Sato unpublished cDNA li... 72 3e-011
gb|CB858437.1|CB858437 HI07A02w HI Hordeum vulgare subsp. v... 72 3e-011
gb|CV059036.1|CV059036 BNEL43f6 Barley EST endosperm librar... 72 3e-011
gb|BF253874.2|BF253874 HVSMEf0002F19f Hordeum vulgare seedl... 68 4e-010
gb|AV913799.1|AV913799 AV913799 K. Sato unpublished cDNA li... 56 2e-006
gb|AV916192.1|AV916192 AV916192 K. Sato unpublished cDNA li... 56 2e-006
gb|AV916990.1|AV916990 AV916990 K. Sato unpublished cDNA li... 56 2e-006
gb|CA026718.1|CA026718 HZ56L20r HZ Hordeum vulgare subsp. v... 56 2e-006
gb|BE422156.1|BE422156 HWM020cG.09r ITEC HWM Barley Leaf Li... 48 4e-004
gb|BI947342.1|BI947342 HVSMEl0005D04f Hordeum vulgare spike... 48 4e-004
gb|AV913933.1|AV913933 AV913933 K. Sato unpublished cDNA li... 48 4e-004
gb|AV917200.1|AV917200 AV917200 K. Sato unpublished cDNA li... 48 4e-004
gb|AV917579.1|AV917579 AV917579 K. Sato unpublished cDNA li... 48 4e-004
gb|AV917900.1|AV917900 AV917900 K. Sato unpublished cDNA li... 48 4e-004
gb|AV918128.1|AV918128 AV918128 K. Sato unpublished cDNA li... 48 4e-004
gb|AV918243.1|AV918243 AV918243 K. Sato unpublished cDNA li... 48 4e-004
gb|AV918260.1|AV918260 AV918260 K. Sato unpublished cDNA li... 48 4e-004
gb|AV918262.1|AV918262 AV918262 K. Sato unpublished cDNA li... 48 4e-004
gb|AV919042.1|AV919042 AV919042 K. Sato unpublished cDNA li... 48 4e-004
gb|AV919161.1|AV919161 AV919161 K. Sato unpublished cDNA li... 48 4e-004
gb|AV920604.1|AV920604 AV920604 K. Sato unpublished cDNA li... 48 4e-004
gb|AV921410.1|AV921410 AV921410 K. Sato unpublished cDNA li... 48 4e-004
gb|AV921547.1|AV921547 AV921547 K. Sato unpublished cDNA li... 48 4e-004
gb|BM444609.1|BM444609 EBem09_SQ005_O07_R embryo, 1 Day ger... 48 4e-004
gb|BM444610.1|BM444610 EBem09_SQ005_O09_R embryo, 1 Day ger... 48 4e-004
gb|BJ465763.1|BJ465763 BJ465763 K. Sato unpublished cDNA li... 48 4e-004
gb|BJ466393.1|BJ466393 BJ466393 K. Sato unpublished cDNA li... 48 4e-004
gb|BJ467710.1|BJ467710 BJ467710 K. Sato unpublished cDNA li... 48 4e-004
gb|BJ468274.1|BJ468274 BJ468274 K. Sato unpublished cDNA li... 48 4e-004
gb|BJ468501.1|BJ468501 BJ468501 K. Sato unpublished cDNA li... 48 4e-004
gb|BQ469152.1|BQ469152 HM03J01r HM Hordeum vulgare subsp. v... 48 4e-004
gb|BQ661453.1|BQ661453 HM03J01u HM Hordeum vulgare subsp. v... 48 4e-004
gb|BM375888.2|BM375888 EBem06_SQ004_L04_R embryo, 21 DPA, n... 48 4e-004
gb|BM100114.2|BM100114 EBma01_SQ001_D19_R maternal, 4 DPA, ... 48 4e-004
gb|BU972640.1|BU972640 HB22E11r BC Hordeum vulgare subsp. v... 48 4e-004
gb|CA027495.1|CA027495 HZ59B20r HZ Hordeum vulgare subsp. v... 48 4e-004
gb|CA028155.1|CA028155 HZ61C14r HZ Hordeum vulgare subsp. v... 48 4e-004
gb|CB859019.1|CB859019 HI09A13w HI Hordeum vulgare subsp. v... 48 4e-004
gb|CB880505.1|CB880505 HM06L21w HM Hordeum vulgare subsp. v... 48 4e-004
gb|BM928843.1|BM928843 LP10030 Lemma/palea-enriched cDNA li... 44 0.006
gb|BQ134670.1|BQ134670 LP30108 Lemma/palea-enriched cDNA li... 44 0.006
gb|BM376094.2|BM376094 EBma01_SQ002_F09_R maternal, 4 DPA, ... 44 0.006
gb|BM371381.2|BM371381 EBma08_SQ002_I05_R maternal, 28 DPA,... 44 0.006
gb|BM371382.2|BM371382 EBma08_SQ002_I06_R maternal, 28 DPA,... 42 0.024
gb|BE420971.1|BE420971 HWM004.D12 ITEC HWM Barley Leaf Libr... 40 0.095
gb|BF620280.1|BF620280 HVSMEc0019E21f Hordeum vulgare seedl... 40 0.095
gb|BM376133.1|BM376133 EBma01_SQ002_H07_R maternal, 4 DPA, ... 40 0.095
gb|BM928833.1|BM928833 LP10006 Lemma/palea-enriched cDNA li... 40 0.095
gb|BM928834.1|BM928834 LP10007 Lemma/palea-enriched cDNA li... 40 0.095
gb|BM928858.1|BM928858 LP20059 Lemma/palea-enriched cDNA li... 40 0.095
gb|BQ134683.1|BQ134683 LP30159 Lemma/palea-enriched cDNA li... 40 0.095
gb|BM376088.2|BM376088 EBma01_SQ002_F01_R maternal, 4 DPA, ... 40 0.095
gb|BM371429.2|BM371429 EBma08_SQ002_L04_R maternal, 28 DPA,... 40 0.095
gb|CD240764.1|CD240764 LP30021 Lemma/palea-enriched cDNA li... 40 0.095
gb|BG301295.1|BG301295 HVSMEb0020I16f Hordeum vulgare seedl... 38 0.37
gb|BG368358.1|BG368358 HVSMEi0017P04f Hordeum vulgare 20 DA... 38 0.37
gb|BI948619.1|BI948619 HVSMEl0010E10f Hordeum vulgare spike... 38 0.37
gb|BG367505.2|BG367505 HVSMEi0012I04f Hordeum vulgare 20 DA... 38 0.37
gb|BQ464272.1|BQ464272 HF01M24T HF Hordeum vulgare subsp. v... 38 0.37
gb|BM928867.1|BM928867 LP300020 Lemma/palea-enriched cDNA l... 38 0.37
gb|BM441924.2|BM441924 EBed07_SQ001_O24_R endosperm, 28 DPA... 38 0.37
gb|BQ758950.1|BQ758950 EBma07_SQ003_G09_R maternal, 21 DPA,... 38 0.37
gb|BU970797.1|BU970797 HB15L12r BC Hordeum vulgare subsp. v... 38 0.37
gb|BU976210.1|BU976210 HA03F10r HA Hordeum vulgare subsp. v... 38 0.37
gb|BU986160.1|BU986160 HF09N16r HF Hordeum vulgare subsp. v... 38 0.37
gb|BU986567.1|BU986567 HF12E04r HF Hordeum vulgare subsp. v... 38 0.37
>gb|BE231065.1|BE231065 HVSMEg0016D19f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0016D19f, mRNA sequence
Length = 887
Score = 240 bits (121), Expect = 5e-062
Identities = 267/316 (84%)
Strand = Plus / Minus
Query: 231 gagcccttgactagcttggcctgttcaggtgtgaaacttggtagccggtctttcacaatg 290
||||||||||| | ||| | ||||||||||||||||| |||| || ||||| || ||
Sbjct: 324 gagcccttgaccaacttagattgttcaggtgtgaaactaggtaacctctcttttactata 265
Query: 291 tcttgcattatctttggatattgcccatttattaatggatcaagaaaccaaccaatatgg 350
|||||||| |||| || ||||| ||||||| || |||||||||||||||||||| ||||
Sbjct: 264 tcttgcatggtcttcgggtattgaccatttagtagtggatcaagaaaccaaccaacatgg 205
Query: 351 aagtccctggccctttgcgctgctttttgatcttcagttgagtttgtaaaaggttcatac 410
||||||||||||||||| |||||| || || ||| ||||| ||| || ||||||
Sbjct: 204 aagtccctggccctttgggctgctgctttgtcggcaggtgagtcggtagcagcatcatac 145
Query: 411 cagttgaagtcaagaactatcccgaccttgcctttctgagttgcctggtatttattgcgg 470
||||||||||| | ||||||||| || |||||||||||| |||||||||| |||||||||
Sbjct: 144 cagttgaagtccaaaactatcccaactttgcctttctgacttgcctggtacttattgcgg 85
Query: 471 tatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggttct 530
||||| |||||||||||||||||| ||| |||||||||||| |||||| ||||||| |||
Sbjct: 84 tatctcgcaactgcagtagcatgacataagagaatgttatggacaacagtgtaaggctct 25
Query: 531 gtcgatgagttcncac 546
|| | ||||||| |||
Sbjct: 24 gttgctgagttcccac 9
Score = 71.9 bits (36), Expect = 3e-011
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 17 gtacttttcctttaggtagttcacgactccatacatgcccgatgggacgatgtaaagcca 76
|||||| ||| ||| ||||||||| |||||||||||| | ||||||||||||||||||
Sbjct: 538 gtacttctcccttatgtagttcacacatccatacatgcctgttgggacgatgtaaagcca 479
Query: 77 aattgagtgcgccatctgtccaat 100
| | |||| |||| ||||||||||
Sbjct: 478 attggagttcgccttctgtccaat 455
>gb|BU997130.1|BU997130 HI07A02r HI Hordeum vulgare subsp. vulgare cDNA clone HI07A02
5-PRIME, mRNA sequence
Length = 632
Score = 222 bits (112), Expect = 1e-056
Identities = 235/277 (84%)
Strand = Plus / Minus
Query: 291 tcttgcattatctttggatattgcccatttattaatggatcaagaaaccaaccaatatgg 350
|||||||| |||| || ||||| ||||||| || |||||||||||||||||||| ||||
Sbjct: 619 tcttgcatggtcttcgggtattgaccatttagtagtggatcaagaaaccaaccaacatgg 560
Query: 351 aagtccctggccctttgcgctgctttttgatcttcagttgagtttgtaaaaggttcatac 410
||||||||||||||||| |||||| || || ||| ||||| ||| || ||||||
Sbjct: 559 aagtccctggccctttgggctgctgctttgtcggcaggtgagtcggtagcagcatcatac 500
Query: 411 cagttgaagtcaagaactatcccgaccttgcctttctgagttgcctggtatttattgcgg 470
||||||||||| | ||||||||| || |||||||||||| |||||||||| |||||||||
Sbjct: 499 cagttgaagtccaaaactatcccaactttgcctttctgacttgcctggtacttattgcgg 440
Query: 471 tatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggttct 530
||||| |||||||||||||||||| ||| |||||||||||| |||||| ||||||| |||
Sbjct: 439 tatctcgcaactgcagtagcatgacataagagaatgttatggacaacagtgtaaggctct 380
Query: 531 gtcgatgagttcncacnngcagtgcattgtgtgcacc 567
|| | ||||||| ||| |||| ||||| |||||||
Sbjct: 379 gttgctgagttcccaccggcagcgcatttggtgcacc 343
Score = 40.1 bits (20), Expect = 0.095
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 605 tgctactatccttggctcat 624
||||||||||||||||||||
Sbjct: 305 tgctactatccttggctcat 286
>gb|BE196433.2|BE196433 HVSMEh0092E14f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0092E14f, mRNA sequence
Length = 859
Score = 218 bits (110), Expect = 2e-055
Identities = 251/297 (84%), Gaps = 1/297 (0%)
Strand = Plus / Minus
Query: 231 gagcccttgactagcttggcctgttcaggtgtgaaacttggtagccggtctttcacaatg 290
||||||||||| | ||| | ||||||||||||||||| |||| || ||||| || ||
Sbjct: 301 gagcccttgaccaacttagattgttcaggtgtgaaactaggtaacctctcttttactata 242
Query: 291 tcttgcattatctttggatattgcccatttattaa-tggatcaagaaaccaaccaatatg 349
|||||||| |||| || ||||| ||||||| | | |||||||||||||||||||| |||
Sbjct: 241 tcttgcatggtcttcgggtattgaccatttagtnagtggatcaagaaaccaaccaacatg 182
Query: 350 gaagtccctggccctttgcgctgctttttgatcttcagttgagtttgtaaaaggttcata 409
|||||||||||||||||| |||||| || || ||| ||||| ||| || |||||
Sbjct: 181 gaagtccctggccctttgggctgctgctttgtcggcaggtgagtcggtagcagcatcata 122
Query: 410 ccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctggtatttattgcg 469
|||||||||||| | ||||||||| || |||||||||||| |||||||||| ||||||||
Sbjct: 121 ccagttgaagtccaaaactatcccaactttgcctttctgacttgcctggtacttattgcg 62
Query: 470 gtatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaagg 526
|||||| |||||||||||||||||| ||| |||||||||||| |||||| |||||||
Sbjct: 61 gtatctcgcaactgcagtagcatgacataagagaatgttatggacaacagtgtaagg 5
>gb|BU994352.1|BU994352 HM06L21r HM Hordeum vulgare subsp. vulgare cDNA clone HM06L21
5-PRIME, mRNA sequence
Length = 644
Score = 172 bits (87), Expect = 1e-041
Identities = 231/280 (82%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| |||||||||||||| ||| || ||||| ||||| | || || | ||||
Sbjct: 341 tctttcacaaggtcttgcattatctgtgggtaatgcccgtttatcagcgggtcgacaaac 282
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
||||||| ||||||||||||||| ||||| |||||| ||| || ||||||||||| |||
Sbjct: 281 caaccaacatggaagtccctggctctttgagctgctgcttggtcctcagttgagttggta 222
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || || |||||||||||||| |||||||| || ||||| |||||||||| ||||||
Sbjct: 221 agagcctcgtaccagttgaagtccagaactattccaaccttccctttctgagctgcctga 162
Query: 459 tatttattgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaaca 518
|| || | |||||||||||||||||| | | || | || ||||| || ||| |||||
Sbjct: 161 tacttggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaaca 102
Query: 519 atgtaaggttctgtcgatgagttcncacnngcagtgcatt 558
|||||||||||||| | ||||||| ||| ||||||||||
Sbjct: 101 atgtaaggttctgttgctgagttcccaccggcagtgcatt 62
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 46 catacatgcccgatgggacgatgtaaagcca 76
||||||| ||||||||||||||||| |||||
Sbjct: 574 catacatccccgatgggacgatgtagagcca 544
>gb|BU978697.1|BU978697 HA14A09r HA Hordeum vulgare subsp. vulgare cDNA clone HA14A09
5-PRIME, mRNA sequence
Length = 637
Score = 170 bits (86), Expect = 4e-041
Identities = 143/163 (87%)
Strand = Plus / Minus
Query: 405 tcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctggtattta 464
||||||||||||||||| | ||||||||| || |||||||||||| |||||||||| |||
Sbjct: 601 tcataccagttgaagtccaaaactatcccaactttgcctttctgacttgcctggtactta 542
Query: 465 ttgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaa 524
||||||||||| |||||||||||||||||| ||| |||||||||||| |||||| |||||
Sbjct: 541 ttgcggtatctcgcaactgcagtagcatgacataagagaatgttatggacaacagtgtaa 482
Query: 525 ggttctgtcgatgagttcncacnngcagtgcattgtgtgcacc 567
|| ||||| | ||||||| ||| |||| ||||| |||||||
Sbjct: 481 ggctctgttgctgagttcccaccggcagcgcatttggtgcacc 439
Score = 40.1 bits (20), Expect = 0.095
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 605 tgctactatccttggctcat 624
||||||||||||||||||||
Sbjct: 401 tgctactatccttggctcat 382
>gb|BF261097.2|BF261097 HVSMEf0023M01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023M01f, mRNA sequence
Length = 751
Score = 157 bits (79), Expect = 6e-037
Identities = 229/280 (81%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| |||||||||||||| ||| || ||||| ||||| | || || | ||||
Sbjct: 285 tctttcacaaggtcttgcattatctgtgggtaatgcccgtttatcagcgggtcgacaaac 226
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|| |||| ||||||||||||||| ||||| |||||| ||| |||||||||||||| |||
Sbjct: 225 cagccaacatggaagtccctggctctttgagctgctgcttggtcttcagttgagttggta 166
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || || ||||||||||| || |||||||| || ||||| || ||||||| ||||||
Sbjct: 165 agagcctcgtaccagttgaaatccagaactataccaaccttccccttctgagctgcctga 106
Query: 459 tatttattgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaaca 518
|| || | |||||||||||||||||| | | || | || ||||| || ||| |||||
Sbjct: 105 tacttggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaaca 46
Query: 519 atgtaaggttctgtcgatgagttcncacnngcagtgcatt 558
|||||||||||||| | ||||||| ||| ||||||||||
Sbjct: 45 atgtaaggttctgttgctgagttcccaccggcagtgcatt 6
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 45 ccatacatgcccgatgggacgatgtaaagcca 76
|||||||| ||||||||||||||||| |||||
Sbjct: 519 ccatacatccccgatgggacgatgtagagcca 488
>gb|AV913558.1|AV913558 AV913558 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22i02 5', mRNA sequence
Length = 517
Score = 157 bits (79), Expect = 6e-037
Identities = 229/280 (81%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| |||||||||||||| ||| || ||||| ||||| | || || | ||||
Sbjct: 335 tctttcacaaggtcttgcattatctgtgggtaatgcccgtttatcagcgggtcgacaaac 276
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|| |||| ||||||||||||||| ||||| |||||| ||| |||||||||||||| |||
Sbjct: 275 cagccaacatggaagtccctggctctttgagctgctgcttggtcttcagttgagttggta 216
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || || ||||||||||| || |||||||| || ||||| || ||||||| ||||||
Sbjct: 215 agagcctcgtaccagttgaaatccagaactataccaaccttccccttctgagctgcctga 156
Query: 459 tatttattgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaaca 518
|| || | |||||||||||||||||| | | || | || ||||| || ||| |||||
Sbjct: 155 tacttggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaaca 96
Query: 519 atgtaaggttctgtcgatgagttcncacnngcagtgcatt 558
|||||||||||||| | ||||||| ||| ||||||||||
Sbjct: 95 atgtaaggttctgttgctgagttcccaccggcagtgcatt 56
>gb|AV915505.1|AV915505 AV915505 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14n06 5', mRNA sequence
Length = 641
Score = 157 bits (79), Expect = 6e-037
Identities = 229/280 (81%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| |||||||||||||| ||| || ||||| ||||| | || || | ||||
Sbjct: 297 tctttcacaaggtcttgcattatctgtgggtaatgcccgtttatcagcgggtcgacaaac 238
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|| |||| ||||||||||||||| ||||| |||||| ||| |||||||||||||| |||
Sbjct: 237 cagccaacatggaagtccctggctctttgagctgctgcttggtcttcagttgagttggta 178
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || || ||||||||||| || |||||||| || ||||| || ||||||| ||||||
Sbjct: 177 agagcctcgtaccagttgaaatccagaactataccaaccttccccttctgagctgcctga 118
Query: 459 tatttattgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaaca 518
|| || | |||||||||||||||||| | | || | || ||||| || ||| |||||
Sbjct: 117 tacttggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaaca 58
Query: 519 atgtaaggttctgtcgatgagttcncacnngcagtgcatt 558
|||||||||||||| | ||||||| ||| ||||||||||
Sbjct: 57 atgtaaggttctgttgctgagttcccaccggcagtgcatt 18
Score = 38.2 bits (19), Expect = 0.37
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 54 cccgatgggacgatgtaaagcca 76
||||||||||||||||| |||||
Sbjct: 522 cccgatgggacgatgtagagcca 500
>gb|AV916601.1|AV916601 AV916601 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17p13 5', mRNA sequence
Length = 640
Score = 157 bits (79), Expect = 6e-037
Identities = 229/280 (81%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| |||||||||||||| ||| || ||||| ||||| | || || | ||||
Sbjct: 555 tctttcacaaggtcttgcattatctgtgggtaatgcccgtttatcagcgggtcgacaaac 496
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|| |||| ||||||||||||||| ||||| |||||| ||| |||||||||||||| |||
Sbjct: 495 cagccaacatggaagtccctggctctttgagctgctgcttggtcttcagttgagttggta 436
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || || ||||||||||| || |||||||| || ||||| || ||||||| ||||||
Sbjct: 435 agagcctcgtaccagttgaaatccagaactataccaaccttccccttctgagctgcctga 376
Query: 459 tatttattgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaaca 518
|| || | |||||||||||||||||| | | || | || ||||| || ||| |||||
Sbjct: 375 tacttggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaaca 316
Query: 519 atgtaaggttctgtcgatgagttcncacnngcagtgcatt 558
|||||||||||||| | ||||||| ||| ||||||||||
Sbjct: 315 atgtaaggttctgttgctgagttcccaccggcagtgcatt 276
>gb|AV916609.1|AV916609 AV916609 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19a05 5', mRNA sequence
Length = 535
Score = 157 bits (79), Expect = 6e-037
Identities = 229/280 (81%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| |||||||||||||| ||| || ||||| ||||| | || || | ||||
Sbjct: 483 tctttcacaaggtcttgcattatctgtgggtaatgcccgtttatcagcgggtcgacaaac 424
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|| |||| ||||||||||||||| ||||| |||||| ||| |||||||||||||| |||
Sbjct: 423 cagccaacatggaagtccctggctctttgagctgctgcttggtcttcagttgagttggta 364
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || || ||||||||||| || |||||||| || ||||| || ||||||| ||||||
Sbjct: 363 agagcctcgtaccagttgaaatccagaactataccaaccttccccttctgagctgcctga 304
Query: 459 tatttattgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaaca 518
|| || | |||||||||||||||||| | | || | || ||||| || ||| |||||
Sbjct: 303 tacttggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaaca 244
Query: 519 atgtaaggttctgtcgatgagttcncacnngcagtgcatt 558
|||||||||||||| | ||||||| ||| ||||||||||
Sbjct: 243 atgtaaggttctgttgctgagttcccaccggcagtgcatt 204
>gb|AV917009.1|AV917009 AV917009 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h02 5', mRNA sequence
Length = 496
Score = 157 bits (79), Expect = 6e-037
Identities = 229/280 (81%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| |||||||||||||| ||| || ||||| ||||| | || || | ||||
Sbjct: 467 tctttcacaaggtcttgcattatctgtgggtaatgcccgtttatcagcgggtcgacaaac 408
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|| |||| ||||||||||||||| ||||| |||||| ||| |||||||||||||| |||
Sbjct: 407 cagccaacatggaagtccctggctctttgagctgctgcttggtcttcagttgagttggta 348
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || || ||||||||||| || |||||||| || ||||| || ||||||| ||||||
Sbjct: 347 agagcctcgtaccagttgaaatccagaactataccaaccttccccttctgagctgcctga 288
Query: 459 tatttattgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaaca 518
|| || | |||||||||||||||||| | | || | || ||||| || ||| |||||
Sbjct: 287 tacttggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaaca 228
Query: 519 atgtaaggttctgtcgatgagttcncacnngcagtgcatt 558
|||||||||||||| | ||||||| ||| ||||||||||
Sbjct: 227 atgtaaggttctgttgctgagttcccaccggcagtgcatt 188
>gb|AV917011.1|AV917011 AV917011 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h04 5', mRNA sequence
Length = 597
Score = 157 bits (79), Expect = 6e-037
Identities = 229/280 (81%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| |||||||||||||| ||| || ||||| ||||| | || || | ||||
Sbjct: 414 tctttcacaaggtcttgcattatctgtgggtaatgcccgtttatcagcgggtcgacaaac 355
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|| |||| ||||||||||||||| ||||| |||||| ||| |||||||||||||| |||
Sbjct: 354 cagccaacatggaagtccctggctctttgagctgctgcttggtcttcagttgagttggta 295
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || || ||||||||||| || |||||||| || ||||| || ||||||| ||||||
Sbjct: 294 agagcctcgtaccagttgaaatccagaactataccaaccttccccttctgagctgcctga 235
Query: 459 tatttattgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaaca 518
|| || | |||||||||||||||||| | | || | || ||||| || ||| |||||
Sbjct: 234 tacttggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaaca 175
Query: 519 atgtaaggttctgtcgatgagttcncacnngcagtgcatt 558
|||||||||||||| | ||||||| ||| ||||||||||
Sbjct: 174 atgtaaggttctgttgctgagttcccaccggcagtgcatt 135
>gb|BJ463364.1|BJ463364 BJ463364 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27d04 5', mRNA sequence
Length = 649
Score = 157 bits (79), Expect = 6e-037
Identities = 229/280 (81%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| |||||||||||||| ||| || ||||| ||||| | || || | ||||
Sbjct: 400 tctttcacaaggtcttgcattatctgtgggtaatgcccgtttatcagcgggtcgacaaac 341
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|| |||| ||||||||||||||| ||||| |||||| ||| |||||||||||||| |||
Sbjct: 340 cagccaacatggaagtccctggctctttgagctgctgcttggtcttcagttgagttggta 281
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || || ||||||||||| || |||||||| || ||||| || ||||||| ||||||
Sbjct: 280 agagcctcgtaccagttgaaatccagaactataccaaccttccccttctgagctgcctga 221
Query: 459 tatttattgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaaca 518
|| || | |||||||||||||||||| | | || | || ||||| || ||| |||||
Sbjct: 220 tacttggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaaca 161
Query: 519 atgtaaggttctgtcgatgagttcncacnngcagtgcatt 558
|||||||||||||| | ||||||| ||| ||||||||||
Sbjct: 160 atgtaaggttctgttgctgagttcccaccggcagtgcatt 121
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 45 ccatacatgcccgatgggacgatgtaaagcca 76
|||||||| ||||||||||||||||| |||||
Sbjct: 634 ccatacatccccgatgggacgatgtagagcca 603
>gb|BJ464778.1|BJ464778 BJ464778 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37p13 5', mRNA sequence
Length = 493
Score = 157 bits (79), Expect = 6e-037
Identities = 229/280 (81%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| |||||||||||||| ||| || ||||| ||||| | || || | ||||
Sbjct: 444 tctttcacaaggtcttgcattatctgtgggtaatgcccgtttatcagcgggtcgacaaac 385
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|| |||| ||||||||||||||| ||||| |||||| ||| |||||||||||||| |||
Sbjct: 384 cagccaacatggaagtccctggctctttgagctgctgcttggtcttcagttgagttggta 325
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || || ||||||||||| || |||||||| || ||||| || ||||||| ||||||
Sbjct: 324 agagcctcgtaccagttgaaatccagaactataccaaccttccccttctgagctgcctga 265
Query: 459 tatttattgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaaca 518
|| || | |||||||||||||||||| | | || | || ||||| || ||| |||||
Sbjct: 264 tacttggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaaca 205
Query: 519 atgtaaggttctgtcgatgagttcncacnngcagtgcatt 558
|||||||||||||| | ||||||| ||| ||||||||||
Sbjct: 204 atgtaaggttctgttgctgagttcccaccggcagtgcatt 165
>gb|BJ465257.1|BJ465257 BJ465257 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39b11 5', mRNA sequence
Length = 661
Score = 157 bits (79), Expect = 6e-037
Identities = 229/280 (81%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| |||||||||||||| ||| || ||||| ||||| | || || | ||||
Sbjct: 462 tctttcacaaggtcttgcattatctgtgggtaatgcccgtttatcagcgggtcgacaaac 403
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|| |||| ||||||||||||||| ||||| |||||| ||| |||||||||||||| |||
Sbjct: 402 cagccaacatggaagtccctggctctttgagctgctgcttggtcttcagttgagttggta 343
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || || ||||||||||| || |||||||| || ||||| || ||||||| ||||||
Sbjct: 342 agagcctcgtaccagttgaaatccagaactataccaaccttccccttctgagctgcctga 283
Query: 459 tatttattgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaaca 518
|| || | |||||||||||||||||| | | || | || ||||| || ||| |||||
Sbjct: 282 tacttggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaaca 223
Query: 519 atgtaaggttctgtcgatgagttcncacnngcagtgcatt 558
|||||||||||||| | ||||||| ||| ||||||||||
Sbjct: 222 atgtaaggttctgttgctgagttcccaccggcagtgcatt 183
>gb|BQ764926.1|BQ764926 EBca01_SQ005_E07_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_E07 5', mRNA sequence
Length = 715
Score = 157 bits (79), Expect = 6e-037
Identities = 229/280 (81%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| |||||||||||||| ||| || ||||| ||||| | || || | ||||
Sbjct: 413 tctttcacaaggtcttgcattatctgtgggtaatgcccgtttatcagcgggtcgacaaac 354
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|| |||| ||||||||||||||| ||||| |||||| ||| |||||||||||||| |||
Sbjct: 353 cagccaacatggaagtccctggctctttgagctgctgcttggtcttcagttgagttggta 294
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || || ||||||||||| || |||||||| || ||||| || ||||||| ||||||
Sbjct: 293 agagcctcgtaccagttgaaatccagaactataccaaccttccccttctgagctgcctga 234
Query: 459 tatttattgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaaca 518
|| || | |||||||||||||||||| | | || | || ||||| || ||| |||||
Sbjct: 233 tacttggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaaca 174
Query: 519 atgtaaggttctgtcgatgagttcncacnngcagtgcatt 558
|||||||||||||| | ||||||| ||| ||||||||||
Sbjct: 173 atgtaaggttctgttgctgagttcccaccggcagtgcatt 134
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 45 ccatacatgcccgatgggacgatgtaaagcca 76
|||||||| ||||||||||||||||| |||||
Sbjct: 647 ccatacatccccgatgggacgatgtagagcca 616
>gb|BU988606.1|BU988606 HF18C11r HF Hordeum vulgare subsp. vulgare cDNA clone HF18C11
5-PRIME, mRNA sequence
Length = 636
Score = 149 bits (75), Expect = 1e-034
Identities = 186/224 (83%)
Strand = Plus / Minus
Query: 335 aaaccaaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtt 394
||||||||||| ||||||||||||||| ||||| |||||| ||| || |||||||||||
Sbjct: 597 aaaccaaccaacatggaagtccctggctctttgagctgctgcttggtcctcagttgagtt 538
Query: 395 tgtaaaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgc 454
|||| || || |||||||||||||| |||||||| || ||||| |||||||||| |||
Sbjct: 537 ggtaagagcctcgtaccagttgaagtccagaactattccaaccttccctttctgagctgc 478
Query: 455 ctggtatttattgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaac 514
||| || || | |||||||||||||||||| | | || | || ||||| || ||| |
Sbjct: 477 ctgatacttggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagc 418
Query: 515 aacaatgtaaggttctgtcgatgagttcncacnngcagtgcatt 558
|||||||||||||||||| | ||||||| ||| ||||||||||
Sbjct: 417 aacaatgtaaggttctgttgctgagttcccaccggcagtgcatt 374
>gb|CA026968.1|CA026968 HZ57H22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ57H22
5-PRIME, mRNA sequence
Length = 491
Score = 143 bits (72), Expect = 9e-033
Identities = 183/221 (82%)
Strand = Plus / Minus
Query: 338 ccaaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgt 397
|||||||| ||||||||||||||| ||||| |||||| ||| || ||||||||||| ||
Sbjct: 491 ccaaccaacatggaagtccctggctctttgagctgctgcttggtcctcagttgagttggt 432
Query: 398 aaaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctg 457
|| || || |||||||||||||| |||||||| || ||||| |||||||||| ||||||
Sbjct: 431 aagagcctcgtaccagttgaagtccagaactattccaaccttccctttctgagctgcctg 372
Query: 458 gtatttattgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaac 517
|| || | |||||||||||||||||| | | || | || ||||| || ||| ||||
Sbjct: 371 atacttggtccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaac 312
Query: 518 aatgtaaggttctgtcgatgagttcncacnngcagtgcatt 558
||||||||||||||| | ||||||| ||| ||||||||||
Sbjct: 311 aatgtaaggttctgttgctgagttcccaccggcagtgcatt 271
>gb|AV912838.1|AV912838 AV912838 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10i17 5', mRNA sequence
Length = 603
Score = 133 bits (67), Expect = 8e-030
Identities = 172/207 (83%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| |||||||||||||| ||| || ||||| ||||| | || || | ||||
Sbjct: 258 tctttcacaaggtcttgcattatctgtgggtaatgcccgtttatcagcgggtcgacaaac 199
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|| |||| ||||||||||||||| ||||| |||||| ||| |||||||||||||| |||
Sbjct: 198 cagccaacatggaagtccctggctctttgagctgctgcttggtcttcagttgagttggta 139
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || || ||||||||||| || |||||||| || ||||| || ||||||| ||||||
Sbjct: 138 agagcctcgtaccagttgaaatccagaactataccaaccttccccttctgagctgcctga 79
Query: 459 tatttattgcggtatcttgcaactgca 485
|| || | ||||||||||||||||||
Sbjct: 78 tacttggtccggtatcttgcaactgca 52
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 45 ccatacatgcccgatgggacgatgtaaagcca 76
|||||||| ||||||||||||||||| |||||
Sbjct: 492 ccatacatccccgatgggacgatgtagagcca 461
>gb|BJ464115.1|BJ464115 BJ464115 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31o15 5', mRNA sequence
Length = 523
Score = 119 bits (60), Expect = 1e-025
Identities = 172/208 (82%), Gaps = 1/208 (0%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| |||||||||||||| ||| || ||||| ||||| | || || | ||||
Sbjct: 275 tctttcacaaggtcttgcattatctgtgggtaatgcccgtttatcagcgggtcgacaaac 216
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|| |||| ||||||||||||||| ||||| |||||| ||| |||||||||||||| |||
Sbjct: 215 cagccaacatggaagtccctggctctttgagctgctgcttggtcttcagttgagttggta 156
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || || ||||||||||| || |||||||| || ||||| || ||||||| ||||||
Sbjct: 155 agagcctcgtaccagttgaaatccagaactataccaaccttccccttctgagctgcctga 96
Query: 459 tatttattgcggtat-cttgcaactgca 485
|| || | |||||| ||||||||||||
Sbjct: 95 tacttggtccggtatncttgcaactgca 68
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 45 ccatacatgcccgatgggacgatgtaaagcca 76
|||||||| ||||||||||||||||| |||||
Sbjct: 509 ccatacatccccgatgggacgatgtagagcca 478
>gb|AV914116.1|AV914116 AV914116 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4m17 5', mRNA sequence
Length = 604
Score = 113 bits (57), Expect = 8e-024
Identities = 171/208 (82%), Gaps = 1/208 (0%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
||||||||| |||||||||||||| ||| || ||||| ||||| | || || | ||||
Sbjct: 216 tctttcacacggtcttgcattatctgtgggtaatgcccgtttatcagcgggtcgacaaac 157
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgta 398
|| |||| ||||||||||||||| ||||| |||||| ||| |||||||||||||| |||
Sbjct: 156 cagccaacatggaagtccctggctctttgagctgctgcttggtcttcagttgagttggta 97
Query: 399 aaaggttcataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctgg 458
| || || ||||||||||| || |||||||| || ||||| || ||||||| ||||||
Sbjct: 96 agagcctcgtaccagttgaaatccagaactataccaaccttccccttctgagctgcctga 37
Query: 459 ta-tttattgcggtatcttgcaactgca 485
|| || | ||||||||||||||||||
Sbjct: 36 tacttggtnccggtatcttgcaactgca 9
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 45 ccatacatgcccgatgggacgatgtaaagcca 76
|||||||| ||||||||||||||||| |||||
Sbjct: 450 ccatacatccccgatgggacgatgtagagcca 419
>gb|CK122337.1|CK122337 BES1824102p02 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P022 5-PRIME, mRNA sequence
Length = 750
Score = 105 bits (53), Expect = 2e-021
Identities = 174/213 (81%), Gaps = 2/213 (0%)
Strand = Plus / Minus
Query: 347 atggaagtccctggccctttgcgctgctttttgatcttcagttgagtttgtaaaaggttc 406
||||||||||||||| ||||| |||||| ||| || ||||||||||| |||| || ||
Sbjct: 708 atggaagtccctggctctttgagctgctgcttg-tcctcagttgagttggtaagagcctc 650
Query: 407 ataccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctggta-tttat 465
|||||||||||||| |||||||| || |||| |||||||||| |||||| || || |
Sbjct: 649 gtaccagttgaagtccagaactattccanccttccctttctgagctgcctgatacttggt 590
Query: 466 tgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaag 525
|||||||||||||||||| | | || | || ||||| || ||| ||||||||||||
Sbjct: 589 cccggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaacaatgtaag 530
Query: 526 gttctgtcgatgagttcncacnngcagtgcatt 558
||||||| | ||||||| ||| ||||||||||
Sbjct: 529 gttctgttgctgagttcccaccggcagtgcatt 497
>gb|AV916387.1|AV916387 AV916387 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17a02 5', mRNA sequence
Length = 630
Score = 101 bits (51), Expect = 3e-020
Identities = 159/196 (81%)
Strand = Plus / Minus
Query: 363 ctttgcgctgctttttgatcttcagttgagtttgtaaaaggttcataccagttgaagtca 422
||||| |||||| ||| |||||||||||||| |||| || || ||||||||||| ||
Sbjct: 626 ctttgagctgctgcttggtcttcagttgagttggtaagagcctcgtaccagttgaaatcc 567
Query: 423 agaactatcccgaccttgcctttctgagttgcctggtatttattgcggtatcttgcaact 482
|||||||| || ||||| || ||||||| |||||| || || | |||||||||||||||
Sbjct: 566 agaactataccaaccttccccttctgagctgcctgatacttggtccggtatcttgcaact 507
Query: 483 gcagtagcatgagataggagaatgttatgaacaacaatgtaaggttctgtcgatgagttc 542
||| | | || | || ||||| || ||| ||||||||||||||||||| | |||||||
Sbjct: 506 gcataaccgtgtgctaagagaaaattgtgagcaacaatgtaaggttctgttgctgagttc 447
Query: 543 ncacnngcagtgcatt 558
||| ||||||||||
Sbjct: 446 ccaccggcagtgcatt 431
>gb|BU997151.1|BU997151 HI07B06r HI Hordeum vulgare subsp. vulgare cDNA clone HI07B06
5-PRIME, mRNA sequence
Length = 614
Score = 101 bits (51), Expect = 3e-020
Identities = 90/104 (86%)
Strand = Plus / Minus
Query: 464 attgcggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgta 523
|||||||||||| |||||||||||||||||| ||| |||||||||||| |||||| ||||
Sbjct: 614 attgcggtatctcgcaactgcagtagcatgacataagagaatgttatggacaacagtgta 555
Query: 524 aggttctgtcgatgagttcncacnngcagtgcattgtgtgcacc 567
||| ||||| | ||||||| ||| |||| ||||| |||||||
Sbjct: 554 aggctctgttgctgagttcccaccggcagcgcatttggtgcacc 511
Score = 40.1 bits (20), Expect = 0.095
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 605 tgctactatccttggctcat 624
||||||||||||||||||||
Sbjct: 473 tgctactatccttggctcat 454
>gb|BJ462621.1|BJ462621 BJ462621 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29i09 5', mRNA sequence
Length = 608
Score = 99.6 bits (50), Expect = 1e-019
Identities = 158/195 (81%)
Strand = Plus / Minus
Query: 364 tttgcgctgctttttgatcttcagttgagtttgtaaaaggttcataccagttgaagtcaa 423
|||| |||||| ||| |||||||||||||| |||| || || ||||||||||| || |
Sbjct: 608 tttgagctgctgcttggtcttcagttgagttggtaagagcctcgtaccagttgaaatcca 549
Query: 424 gaactatcccgaccttgcctttctgagttgcctggtatttattgcggtatcttgcaactg 483
||||||| || ||||| || ||||||| |||||| || || | ||||||||||||||||
Sbjct: 548 gaactataccaaccttccccttctgagctgcctgatacttggtccggtatcttgcaactg 489
Query: 484 cagtagcatgagataggagaatgttatgaacaacaatgtaaggttctgtcgatgagttcn 543
|| | | || | || ||||| || ||| ||||||||||||||||||| | |||||||
Sbjct: 488 cataaccgtgtgctaagagaaaattgtgagcaacaatgtaaggttctgttgctgagttcc 429
Query: 544 cacnngcagtgcatt 558
||| ||||||||||
Sbjct: 428 caccggcagtgcatt 414
>gb|BE195060.3|BE195060 HVSMEh0088D01f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0088D01f, mRNA sequence
Length = 803
Score = 87.7 bits (44), Expect = 5e-016
Identities = 98/116 (84%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttattaatggatcaagaaac 338
|||||||||| |||||||||||||| ||| || ||||| ||||| | || || | ||||
Sbjct: 116 tctttcacaaggtcttgcattatctgtgggtaatgcccgtttatcagcgggtcgacaaac 57
Query: 339 caaccaatatggaagtccctggccctttgcgctgctttttgatcttcagttgagtt 394
|| |||| ||||||||||||||| ||||| |||||| ||| ||||||||||||||
Sbjct: 56 cagccaacatggaagtccctggctctttgagctgctgcttggtcttcagttgagtt 1
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 45 ccatacatgcccgatgggacgatgtaaagcca 76
|||||||| ||||||||||||||||| |||||
Sbjct: 350 ccatacatccccgatgggacgatgtagagcca 319
>gb|AV914017.1|AV914017 AV914017 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4d02 5', mRNA sequence
Length = 163
Score = 81.8 bits (41), Expect = 3e-014
Identities = 122/150 (81%)
Strand = Plus / Minus
Query: 408 taccagttgaagtcaagaactatcccgaccttgcctttctgagttgcctggtatttattg 467
||||||||||| || |||||||| || ||||| || ||||||| |||||| || || |
Sbjct: 150 taccagttgaaatccagaactataccaaccttccccttctgagctgcctgatacttggtc 91
Query: 468 cggtatcttgcaactgcagtagcatgagataggagaatgttatgaacaacaatgtaaggt 527
|||||||||||||||||| | | || | || ||||| || ||| ||||||||||||||
Sbjct: 90 cggtatcttgcaactgcataaccgtgtgctaagagaaaattgtgagcaacaatgtaaggt 31
Query: 528 tctgtcgatgagttcncacnngcagtgcat 557
||||| | ||||||| ||| |||||||||
Sbjct: 30 tctgttgctgagttcccaccggcagtgcat 1
>gb|AV915968.1|AV915968 AV915968 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16o12 5', mRNA sequence
Length = 494
Score = 71.9 bits (36), Expect = 3e-011
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 17 gtacttttcctttaggtagttcacgactccatacatgcccgatgggacgatgtaaagcca 76
|||||| ||| ||| ||||||||| |||||||||||| | ||||||||||||||||||
Sbjct: 340 gtacttctcccttatgtagttcacacatccatacatgcctgttgggacgatgtaaagcca 281
Query: 77 aattgagtgcgccatctgtccaat 100
| | |||| |||| ||||||||||
Sbjct: 280 attggagttcgccttctgtccaat 257
Score = 71.9 bits (36), Expect = 3e-011
Identities = 103/124 (83%), Gaps = 1/124 (0%)
Strand = Plus / Minus
Query: 231 gagcccttgactagcttggcctgttcaggtgtgaaacttggtagccggtctttcacaatg 290
||||||||||| | ||| | ||||||||||||||||| |||| || ||||| || ||
Sbjct: 126 gagcccttgaccaacttagattgttcaggtgtgaaactaggtaacctctcttttactata 67
Query: 291 tcttgcattatctttggatattgcccatttattaatggatcaagaaaccaaccaatatgg 350
|||||||| |||| || ||||| ||||||| || ||||||||||||||||||| ||||
Sbjct: 66 tcttgcatggtcttcgggtattgaccatttagtag-ggatcaagaaaccaaccaacatgg 8
Query: 351 aagt 354
||||
Sbjct: 7 aagt 4
>gb|BJ462494.1|BJ462494 BJ462494 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28l23 5', mRNA sequence
Length = 610
Score = 71.9 bits (36), Expect = 3e-011
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 17 gtacttttcctttaggtagttcacgactccatacatgcccgatgggacgatgtaaagcca 76
|||||| ||| ||| ||||||||| |||||||||||| | ||||||||||||||||||
Sbjct: 339 gtacttctcccttatgtagttcacacatccatacatgcctgttgggacgatgtaaagcca 280
Query: 77 aattgagtgcgccatctgtccaat 100
| | |||| |||| ||||||||||
Sbjct: 279 attggagttcgccttctgtccaat 256
Score = 61.9 bits (31), Expect = 3e-008
Identities = 95/115 (82%), Gaps = 1/115 (0%)
Strand = Plus / Minus
Query: 231 gagcccttgactagcttggcctgttcaggtgtgaaacttggtagccggtctttcacaatg 290
||||||||||| | ||| | ||||||||||||||||| |||| || ||||| || ||
Sbjct: 125 gagcccttgaccaacttagattgttcaggtgtgaaactaggtaacctctcttttactata 66
Query: 291 tcttgcattatctttggatattgcccatttattaatggatcaagaaaccaaccaa 345
|||||||| |||| || ||||| ||||||| | | |||||||||||||||||||
Sbjct: 65 tcttgcatggtcttcgggtattgaccatttagt-agggatcaagaaaccaaccaa 12
>gb|CB858437.1|CB858437 HI07A02w HI Hordeum vulgare subsp. vulgare cDNA clone HI07A02
3-PRIME, mRNA sequence
Length = 653
Score = 71.9 bits (36), Expect = 3e-011
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 17 gtacttttcctttaggtagttcacgactccatacatgcccgatgggacgatgtaaagcca 76
|||||| ||| ||| ||||||||| |||||||||||| | ||||||||||||||||||
Sbjct: 348 gtacttctcccttatgtagttcacacatccatacatgcctgttgggacgatgtaaagcca 407
Query: 77 aattgagtgcgccatctgtccaat 100
| | |||| |||| ||||||||||
Sbjct: 408 attggagttcgccttctgtccaat 431
Score = 46.1 bits (23), Expect = 0.002
Identities = 74/91 (81%)
Strand = Plus / Plus
Query: 231 gagcccttgactagcttggcctgttcaggtgtgaaacttggtagccggtctttcacaatg 290
||||||||||| | ||| | ||||||||||||||||| |||| || ||||| || ||
Sbjct: 562 gagcccttgaccaacttagattgttcaggtgtgaaactaggtaacctctcttttactata 621
Query: 291 tcttgcattatctttggatattgcccattta 321
|||||||| |||| || ||||| |||||||
Sbjct: 622 tcttgcatggtcttcgggtattgaccattta 652
>gb|CV059036.1|CV059036 BNEL43f6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL43f6 5' similar to putative
beta-glucosidase, mRNA sequence
Length = 506
Score = 71.9 bits (36), Expect = 3e-011
Identities = 72/84 (85%)
Strand = Plus / Minus
Query: 17 gtacttttcctttaggtagttcacgactccatacatgcccgatgggacgatgtaaagcca 76
|||||| ||| ||| ||||||||| |||||||||||| | ||||||||||||||||||
Sbjct: 141 gtacttctcccttatgtagttcacacatccatacatgcctgttgggacgatgtaaagcca 82
Query: 77 aattgagtgcgccatctgtccaat 100
| | |||| |||| ||||||||||
Sbjct: 81 attggagttcgccttctgtccaat 58
>gb|BF253874.2|BF253874 HVSMEf0002F19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002F19f, mRNA sequence
Length = 535
Score = 67.9 bits (34), Expect = 4e-010
Identities = 100/123 (81%)
Strand = Plus / Minus
Query: 436 ccttgcctttctgagttgcctggtatttattgcggtatcttgcaactgcagtagcatgag 495
|||| ||||| ||||||||||| || || | |||||||||||||||||| | | || |
Sbjct: 323 ccttccctttttgagttgcctgatacttggtccggtatcttgcaactgcataaccgtgtg 264
Query: 496 ataggagaatgttatgaacaacaatgtaaggttctgtcgatgagttcncacnngcagtgc 555
|| ||||| || ||| ||||||||||||||||||| | ||||||| ||| |||||||
Sbjct: 263 ttaagagaaaattgtgagcaacaatgtaaggttctgttgttgagttcccaccggcagtgc 204
Query: 556 att 558
|||
Sbjct: 203 att 201
>gb|AV913799.1|AV913799 AV913799 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23f10 5', mRNA sequence
Length = 636
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 514 caacaatgtaaggttctgtcgatgagttcncacnngcagtgcatt 558
||||||||||||||||||| | ||||||| ||| ||||||||||
Sbjct: 636 caacaatgtaaggttctgttgctgagttcccaccggcagtgcatt 592
>gb|AV916192.1|AV916192 AV916192 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12a16 5', mRNA sequence
Length = 444
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 514 caacaatgtaaggttctgtcgatgagttcncacnngcagtgcatt 558
||||||||||||||||||| | ||||||| ||| ||||||||||
Sbjct: 418 caacaatgtaaggttctgttgctgagttcccaccggcagtgcatt 374
>gb|AV916990.1|AV916990 AV916990 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20f24 5', mRNA sequence
Length = 497
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 514 caacaatgtaaggttctgtcgatgagttcncacnngcagtgcatt 558
||||||||||||||||||| | ||||||| ||| ||||||||||
Sbjct: 473 caacaatgtaaggttctgttgctgagttcccaccggcagtgcatt 429
>gb|CA026718.1|CA026718 HZ56L20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ56L20
5-PRIME, mRNA sequence
Length = 328
Score = 56.0 bits (28), Expect = 2e-006
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 514 caacaatgtaaggttctgtcgatgagttcncacnngcagtgcatt 558
||||||||||||||||||| | ||||||| ||| ||||||||||
Sbjct: 316 caacaatgtaaggttctgttgctgagttcccaccggcagtgcatt 272
>gb|BE422156.1|BE422156 HWM020cG.09r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM020cG.09, mRNA sequence
Length = 1023
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 45 ccatacatgcccgatgggacgatgtaaagcca 76
|||||||| ||||||||||||||||| |||||
Sbjct: 437 ccatacatccccgatgggacgatgtagagcca 406
Score = 48.1 bits (24), Expect = 4e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 279 tctttcacaatgtcttgcattatctttggatattgcccatttat 322
|||||||||| |||||||||||||| ||| || ||||| |||||
Sbjct: 203 tctttcacaaggtcttgcattatctgtgggtaatgcccgtttat 160
>gb|BI947342.1|BI947342 HVSMEl0005D04f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0005D04f, mRNA sequence
Length = 508
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 45 ccatacatgcccgatgggacgatgtaaagcca 76
|||||||| ||||||||||||||||| |||||
Sbjct: 203 ccatacatccccgatgggacgatgtagagcca 172
>gb|AV913933.1|AV913933 AV913933 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23m22 5', mRNA sequence
Length = 573
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 45 ccatacatgcccgatgggacgatgtaaagcca 76
|||||||| ||||||||||||||||| |||||
Sbjct: 61 ccatacatccccgatgggacgatgtagagcca 30
>gb|AV917200.1|AV917200 AV917200 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8l06 5', mRNA sequence
Length = 474
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 45 ccatacatgcccgatgggacgatgtaaagcca 76
|||||||| ||||||||||||||||| |||||
Sbjct: 197 ccatacatccccgatgggacgatgtagagcca 166
>gb|AV917579.1|AV917579 AV917579 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10i17 3', mRNA sequence
Length = 688
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 45 ccatacatgcccgatgggacgatgtaaagcca 76
|||||||| ||||||||||||||||| |||||
Sbjct: 493 ccatacatccccgatgggacgatgtagagcca 524
>gb|AV917900.1|AV917900 AV917900 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17a02 3', mRNA sequence
Length = 691
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 45 ccatacatgcccgatgggacgatgtaaagcca 76
|||||||| ||||||||||||||||| |||||
Sbjct: 462 ccatacatccccgatgggacgatgtagagcca 493
>gb|AV918128.1|AV918128 AV918128 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17p13 3', mRNA sequence
Length = 684
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 45 ccatacatgcccgatgggacgatgtaaagcca 76
|||||||| ||||||||||||||||| |||||
Sbjct: 488 ccatacatccccgatgggacgatgtagagcca 519
>gb|AV918243.1|AV918243 AV918243 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20f24 3', mRNA sequence
Length = 629
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 45 ccatacatgcccgatgggacgatgtaaagcca 76
|||||||| ||||||||||||||||| |||||
Sbjct: 482 ccatacatccccgatgggacgatgtagagcca 513
>gb|AV918260.1|AV918260 AV918260 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h02 3', mRNA sequence
Length = 629
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 45 ccatacatgcccgatgggacgatgtaaagcca 76
|||||||| ||||||||||||||||| |||||
Sbjct: 488 ccatacatccccgatgggacgatgtagagcca 519
>gb|AV918262.1|AV918262 AV918262 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20h04 3', mRNA sequence
Length = 673
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 45 ccatacatgcccgatgggacgatgtaaagcca 76
|||||||| ||||||||||||||||| |||||
Sbjct: 474 ccatacatccccgatgggacgatgtagagcca 505
>gb|AV919042.1|AV919042 AV919042 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4d02 3', mRNA sequence
Length = 621
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 45 ccatacatgcccgatgggacgatgtaaagcca 76
|||||||| ||||||||||||||||| |||||
Sbjct: 480 ccatacatccccgatgggacgatgtagagcca 511
>gb|AV919161.1|AV919161 AV919161 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4m17 3', mRNA sequence
Length = 714
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 45 ccatacatgcccgatgggacgatgtaaagcca 76
|||||||| ||||||||||||||||| |||||
Sbjct: 483 ccatacatccccgatgggacgatgtagagcca 514
>gb|AV920604.1|AV920604 AV920604 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14n06 3', mRNA sequence
Length = 670
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 45 ccatacatgcccgatgggacgatgtaaagcca 76
|||||||| ||||||||||||||||| |||||
Sbjct: 461 ccatacatccccgatgggacgatgtagagcca 492
>gb|AV921410.1|AV921410 AV921410 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23f10 3', mRNA sequence
Length = 586
Score = 48.1 bits (24), Expect = 4e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 45 ccatacatgcccgatgggacgatgtaaagcca 76
|||||||| ||||||||||||||||| |||||
Sbjct: 483 ccatacatccccgatgggacgatgtagagcca 514
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 37,972
Number of Sequences: 312970
Number of extensions: 37972
Number of successful extensions: 9557
Number of sequences better than 0.5: 94
Number of HSP's better than 0.5 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9347
Number of HSP's gapped (non-prelim): 188
length of query: 696
length of database: 175,134,539
effective HSP length: 19
effective length of query: 677
effective length of database: 169,188,109
effective search space: 114540349793
effective search space used: 114540349793
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)