BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE12f02.yg.2.1
(290 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI949437.1|BI949437 HVSMEl0013O09f Hordeum vulgare spike... 90 5e-017
gb|AV917031.1|AV917031 AV917031 K. Sato unpublished cDNA li... 90 5e-017
gb|AV927219.1|AV927219 AV927219 K. Sato unpublished cDNA li... 90 5e-017
gb|AJ462437.1|AJ462437 AJ462437 S00002 Hordeum vulgare subs... 86 7e-016
gb|BU971759.1|BU971759 HB19J12r BC Hordeum vulgare subsp. v... 86 7e-016
gb|CA025840.1|CA025840 HZ53E19r HZ Hordeum vulgare subsp. v... 86 7e-016
gb|BG300950.1|BG300950 HVSMEb0019A22f Hordeum vulgare seedl... 76 7e-013
gb|BI955734.1|BI955734 HVSMEm0024E12f Hordeum vulgare green... 76 7e-013
gb|BQ465804.1|BQ465804 HU04L18r HU Hordeum vulgare subsp. v... 74 3e-012
gb|BQ469182.1|BQ469182 HM03K08r HM Hordeum vulgare subsp. v... 74 3e-012
gb|AV923841.1|AV923841 AV923841 K. Sato unpublished cDNA li... 56 6e-007
gb|BQ660846.1|BQ660846 HI05L24u HI Hordeum vulgare subsp. v... 56 6e-007
gb|BI959339.1|BI959339 HVSMEn0019E20f Hordeum vulgare rachi... 52 1e-005
gb|BG343763.2|BG343763 HVSMEg0006L01f Hordeum vulgare pre-a... 52 1e-005
gb|AV913277.1|AV913277 AV913277 K. Sato unpublished cDNA li... 52 1e-005
gb|AV913278.1|AV913278 AV913278 K. Sato unpublished cDNA li... 52 1e-005
gb|AV914152.1|AV914152 AV914152 K. Sato unpublished cDNA li... 52 1e-005
gb|AV914933.1|AV914933 AV914933 K. Sato unpublished cDNA li... 52 1e-005
gb|AV918571.1|AV918571 AV918571 K. Sato unpublished cDNA li... 52 1e-005
gb|AV918572.1|AV918572 AV918572 K. Sato unpublished cDNA li... 52 1e-005
gb|AV919198.1|AV919198 AV919198 K. Sato unpublished cDNA li... 52 1e-005
gb|AV920051.1|AV920051 AV920051 K. Sato unpublished cDNA li... 52 1e-005
gb|AV925215.1|AV925215 AV925215 K. Sato unpublished cDNA li... 52 1e-005
gb|AV930365.1|AV930365 AV930365 K. Sato unpublished cDNA li... 52 1e-005
gb|AV934882.1|AV934882 AV934882 K. Sato unpublished cDNA li... 52 1e-005
gb|AV936150.1|AV936150 AV936150 K. Sato unpublished cDNA li... 52 1e-005
gb|BM816138.1|BM816138 HC109B12_T3.ab1 HC Hordeum vulgare s... 52 1e-005
gb|BM816139.1|BM816139 HC105G09_T3.ab1 HC Hordeum vulgare s... 52 1e-005
gb|BJ466285.1|BJ466285 BJ466285 K. Sato unpublished cDNA li... 52 1e-005
gb|BQ465284.1|BQ465284 HU03C22r HU Hordeum vulgare subsp. v... 52 1e-005
gb|BM370580.2|BM370580 EBro08_SQ004_K11_R root, 3 week, dro... 52 1e-005
gb|BQ766406.1|BQ766406 EBro08_SQ005_L20_R root, 3 week, dro... 52 1e-005
gb|BU990492.1|BU990492 HF25D10r HF Hordeum vulgare subsp. v... 52 1e-005
gb|CA017356.1|CA017356 HV12L21u HV Hordeum vulgare subsp. v... 52 1e-005
gb|AV925770.1|AV925770 AV925770 K. Sato unpublished cDNA li... 50 4e-005
gb|AV930906.1|AV930906 AV930906 K. Sato unpublished cDNA li... 50 4e-005
gb|AV931092.1|AV931092 AV931092 K. Sato unpublished cDNA li... 50 4e-005
gb|AV931093.1|AV931093 AV931093 K. Sato unpublished cDNA li... 50 4e-005
gb|BQ468619.1|BQ468619 HM01M13T HM Hordeum vulgare subsp. v... 50 4e-005
gb|BI776485.2|BI776485 EBpi05_SQ001_J01_R pistil, 8 DPA, no... 50 4e-005
gb|BU967165.1|BU967165 HB03H16r BC Hordeum vulgare subsp. v... 50 4e-005
gb|BU967242.1|BU967242 HB03K11r BC Hordeum vulgare subsp. v... 50 4e-005
gb|BU986849.1|BU986849 HF13B10r HF Hordeum vulgare subsp. v... 50 4e-005
gb|BU988138.1|BU988138 HF16M09r HF Hordeum vulgare subsp. v... 50 4e-005
gb|CA025257.1|CA025257 HZ51J24r HZ Hordeum vulgare subsp. v... 50 4e-005
gb|CB860194.1|CB860194 HI12P13w HI Hordeum vulgare subsp. v... 50 4e-005
gb|CB876338.1|CB876338 HX10P19w HX Hordeum vulgare subsp. v... 50 4e-005
gb|AV926207.1|AV926207 AV926207 K. Sato unpublished cDNA li... 40 0.038
>gb|BI949437.1|BI949437 HVSMEl0013O09f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0013O09f, mRNA sequence
Length = 938
Score = 89.7 bits (45), Expect = 5e-017
Identities = 167/211 (79%)
Strand = Plus / Plus
Query: 1 acacatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttca 60
||||||| |||||||| ||||| ||||| || || ||||| |||| || |||||||||
Sbjct: 119 acacattcaaatggacaaccttgttgattcccccgaccaccctgcttctgctgaacttca 178
Query: 61 ttggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnn 120
| |||||||| ||||| | ||||| |||||||| || ||||| || ||||||||
Sbjct: 179 tcggtgtggttgctggcatctccaacgcaatcaacaacggatatgaatcatgggggcctc 238
Query: 121 nnttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaag 180
||||||||||||||||| || || |||||||||| | ||||| || |||||||| |
Sbjct: 239 tcttcgggaagctcttcttcgcgttctgggtgattgttcatctgtacccgttcctcaagg 298
Query: 181 gtttggttgggaggcaaaacaggacaccgac 211
|| || | || ||||| |||||||| |||||
Sbjct: 299 gtctgttgggaaggcagaacaggaccccgac 329
>gb|AV917031.1|AV917031 AV917031 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20i09 5', mRNA sequence
Length = 579
Score = 89.7 bits (45), Expect = 5e-017
Identities = 167/211 (79%)
Strand = Plus / Plus
Query: 1 acacatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttca 60
||||||| |||||||| ||||| ||||| || || ||||| |||| || |||||||||
Sbjct: 87 acacattcaaatggacaaccttgttgattcccccgaccaccctgcttctgctgaacttca 146
Query: 61 ttggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnn 120
| |||||||| ||||| | ||||| |||||||| || ||||| || ||||||||
Sbjct: 147 tcggtgtggttgctggcatctccaacgcaatcaacaacggatatgaatcatgggggcctc 206
Query: 121 nnttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaag 180
||||||||||||||||| || || |||||||||| | ||||| || |||||||| |
Sbjct: 207 tcttcgggaagctcttcttcgcgttctgggtgattgttcatctgtacccgttcctcaagg 266
Query: 181 gtttggttgggaggcaaaacaggacaccgac 211
|| || | || ||||| |||||||| |||||
Sbjct: 267 gtctgttgggaaggcagaacaggaccccgac 297
>gb|AV927219.1|AV927219 AV927219 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1a04 3', mRNA sequence
Length = 588
Score = 89.7 bits (45), Expect = 5e-017
Identities = 167/211 (79%)
Strand = Plus / Minus
Query: 1 acacatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttca 60
||||||| |||||||| ||||| ||||| || || ||||| |||| || |||||||||
Sbjct: 423 acacattcaaatggacaaccttgttgattcccccgaccaccctgcttctgctgaacttca 364
Query: 61 ttggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnn 120
| |||||||| ||||| | ||||| |||||||| || ||||| || ||||||||
Sbjct: 363 tcggtgtggttgctggcatctccaacgcaatcaacaacggatatgaatcatgggggcctc 304
Query: 121 nnttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaag 180
||||||||||||||||| || || |||||||||| | ||||| || |||||||| |
Sbjct: 303 tcttcgggaagctcttcttcgcgttctgggtgattgttcatctgtacccgttcctcaagg 244
Query: 181 gtttggttgggaggcaaaacaggacaccgac 211
|| || | || ||||| |||||||| |||||
Sbjct: 243 gtctgttgggaaggcagaacaggaccccgac 213
>gb|AJ462437.1|AJ462437 AJ462437 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200081H04F1, mRNA sequence
Length = 360
Score = 85.7 bits (43), Expect = 7e-016
Identities = 165/209 (78%)
Strand = Plus / Plus
Query: 3 acatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 62
||||| |||||||| ||||| ||||| || || ||||| |||| || ||||||||||
Sbjct: 92 acattcaaatggacaaccttgttgattcccccgaccaccctgcttctgctgaacttcatc 151
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnn 122
|||||||| ||||| | ||||| |||||||| || ||||| || ||||||||
Sbjct: 152 ggtgtggttgctggcatctccaacgcaatcaacaacggatatgaatcatgggggcctctc 211
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
||||||||||||||||| || || |||||||||| | ||||| || |||||||| |||
Sbjct: 212 ttcgggaagctcttcttcgcgttctgggtgattgttcatctgtacccgttcctcaagggt 271
Query: 183 ttggttgggaggcaaaacaggacaccgac 211
|| | || ||||| |||||||| |||||
Sbjct: 272 ctgttgggaaggcagaacaggaccccgac 300
>gb|BU971759.1|BU971759 HB19J12r BC Hordeum vulgare subsp. vulgare cDNA clone HB19J12
5-PRIME, mRNA sequence
Length = 649
Score = 85.7 bits (43), Expect = 7e-016
Identities = 165/209 (78%)
Strand = Plus / Plus
Query: 3 acatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 62
||||| |||||||| ||||| ||||| || || ||||| |||| || ||||||||||
Sbjct: 367 acattcaaatggacaaccttgttgattcccccgaccaccctgcttctgctgaacttcatc 426
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnn 122
|||||||| ||||| | ||||| |||||||| || ||||| || ||||||||
Sbjct: 427 ggtgtggttgctggcatctccaacgcaatcaacaacggatatgaatcatgggggcctctc 486
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
||||||||||||||||| || || |||||||||| | ||||| || |||||||| |||
Sbjct: 487 ttcgggaagctcttcttcgcgttctgggtgattgttcatctgtacccgttcctcaagggt 546
Query: 183 ttggttgggaggcaaaacaggacaccgac 211
|| | || ||||| |||||||| |||||
Sbjct: 547 ctgttgggaaggcagaacaggaccccgac 575
>gb|CA025840.1|CA025840 HZ53E19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53E19
5-PRIME, mRNA sequence
Length = 456
Score = 85.7 bits (43), Expect = 7e-016
Identities = 165/209 (78%)
Strand = Plus / Plus
Query: 3 acatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 62
||||| |||||||| ||||| ||||| || || ||||| |||| || ||||||||||
Sbjct: 165 acattcaaatggacaaccttgttgattcccccgaccaccctgcttctgctgaacttcatc 224
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnn 122
|||||||| ||||| | ||||| |||||||| || ||||| || ||||||||
Sbjct: 225 ggtgtggttgctggcatctccaacgcaatcaacaacggatatgaatcatgggggcctctc 284
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
||||||||||||||||| || || |||||||||| | ||||| || |||||||| |||
Sbjct: 285 ttcgggaagctcttcttcgcgttctgggtgattgttcatctgtacccgttcctcaagggt 344
Query: 183 ttggttgggaggcaaaacaggacaccgac 211
|| | || ||||| |||||||| |||||
Sbjct: 345 ctgttgggaaggcagaacaggaccccgac 373
>gb|BG300950.1|BG300950 HVSMEb0019A22f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019A22f, mRNA sequence
Length = 619
Score = 75.8 bits (38), Expect = 7e-013
Identities = 127/160 (79%)
Strand = Plus / Plus
Query: 52 tgaacttcattggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcat 111
|||||||||| |||||||| ||||| | ||||| |||||||| || ||||| || ||||
Sbjct: 29 tgaacttcatcggtgtggttgctggcatctccaacgcaatcaacaacggatatgaatcat 88
Query: 112 ggggnnnnnnnttcgggaagctcttctttgcattttgggtgattgncnanctgtatccct 171
|||| ||||||||||||||||| || || |||||||||| | ||||| || |
Sbjct: 89 gggggcctctcttcgggaagctcttcttcgcgttctgggtgattgttcatctgtacccgt 148
Query: 172 tcctcaaaggtttggttgggaggcaaaacaggacaccgac 211
||||||| ||| || | || ||||| |||||||| |||||
Sbjct: 149 tcctcaagggtctgttgggaaggcagaacaggaccccgac 188
>gb|BI955734.1|BI955734 HVSMEm0024E12f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0024E12f, mRNA sequence
Length = 707
Score = 75.8 bits (38), Expect = 7e-013
Identities = 127/160 (79%)
Strand = Plus / Plus
Query: 52 tgaacttcattggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcat 111
|||||||||| |||||||| ||||| | ||||| |||||||| || ||||| || ||||
Sbjct: 192 tgaacttcatcggtgtggttgctggcatctccaacgcaatcaacaacggatatgaatcat 251
Query: 112 ggggnnnnnnnttcgggaagctcttctttgcattttgggtgattgncnanctgtatccct 171
|||| ||||||||||||||||| || || |||||||||| | ||||| || |
Sbjct: 252 gggggcctctcttcgggaagctcttcttcgcgttctgggtgattgttcatctgtacccgt 311
Query: 172 tcctcaaaggtttggttgggaggcaaaacaggacaccgac 211
||||||| ||| || | || ||||| |||||||| |||||
Sbjct: 312 tcctcaagggtctgttgggaaggcagaacaggaccccgac 351
>gb|BQ465804.1|BQ465804 HU04L18r HU Hordeum vulgare subsp. vulgare cDNA clone HU04L18
5-PRIME, mRNA sequence
Length = 644
Score = 73.8 bits (37), Expect = 3e-012
Identities = 123/154 (79%)
Strand = Plus / Plus
Query: 3 acatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 62
||||| |||||||| ||||| ||||| || || ||||| |||| || ||||||||||
Sbjct: 475 acattcaaatggacaaccttgttgattcccccgaccaccctgcttctgctgaacttcatc 534
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnn 122
|||||||| ||||| | ||||| |||||||| || ||||| || ||||||||
Sbjct: 535 ggtgtggttgctggcatctccaacgcaatcaacaacggatatgaatcatgggggcctctc 594
Query: 123 ttcgggaagctcttctttgcattttgggtgattg 156
||||||||||||||||| || || ||||||||||
Sbjct: 595 ttcgggaagctcttcttcgcgttctgggtgattg 628
>gb|BQ469182.1|BQ469182 HM03K08r HM Hordeum vulgare subsp. vulgare cDNA clone HM03K08
5-PRIME, mRNA sequence
Length = 660
Score = 73.8 bits (37), Expect = 3e-012
Identities = 123/154 (79%)
Strand = Plus / Plus
Query: 3 acatttaaatggactaccttattgatacctcctaccactttgctcctattgaacttcatt 62
||||| |||||||| ||||| ||||| || || ||||| |||| || ||||||||||
Sbjct: 500 acattcaaatggacaaccttgttgattcccccgaccaccctgcttctgctgaacttcatc 559
Query: 63 ggtgtggtcgctggtgtttccaatgcaatcaataatggatacgagtcatggggnnnnnnn 122
|||||||| ||||| | ||||| |||||||| || ||||| || ||||||||
Sbjct: 560 ggtgtggttgctggcatctccaacgcaatcaacaacggatatgaatcatgggggcctctc 619
Query: 123 ttcgggaagctcttctttgcattttgggtgattg 156
||||||||||||||||| || || ||||||||||
Sbjct: 620 ttcgggaagctcttcttcgcgttctgggtgattg 653
>gb|AV923841.1|AV923841 AV923841 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1m06 5', mRNA sequence
Length = 522
Score = 56.0 bits (28), Expect = 6e-007
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
||||||||||||||||| || || |||||||||| | ||||| || |||||||| |||
Sbjct: 3 ttcgggaagctcttcttcgcgttctgggtgattgttcatctgtacccgttcctcaagggt 62
Query: 183 ttggttgggaggcaaaacaggacaccgac 211
|| | || ||||| |||||||| |||||
Sbjct: 63 ctgttgggaaggcagaacaggaccccgac 91
>gb|BQ660846.1|BQ660846 HI05L24u HI Hordeum vulgare subsp. vulgare cDNA clone HI05L24
3-PRIME, mRNA sequence
Length = 539
Score = 56.0 bits (28), Expect = 6e-007
Identities = 73/89 (82%)
Strand = Plus / Minus
Query: 123 ttcgggaagctcttctttgcattttgggtgattgncnanctgtatcccttcctcaaaggt 182
|||||||||||||||||||| || |||||||||| | | || ||||||||||| |||
Sbjct: 378 ttcgggaagctcttctttgccttctgggtgattgttcacttataccccttcctcaagggt 319
Query: 183 ttggttgggaggcaaaacaggacaccgac 211
|| | || ||||||||| | ||||||||
Sbjct: 318 tttatgggcaggcaaaaccgcacaccgac 290
>gb|BI959339.1|BI959339 HVSMEn0019E20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019E20f, mRNA sequence
Length = 681
Score = 52.0 bits (26), Expect = 1e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 123 ttcgggaagctcttctttgcattttgggtgattg 156
|||||||||||||||||||| || ||||||||||
Sbjct: 542 ttcgggaagctcttctttgccttctgggtgattg 509
>gb|BG343763.2|BG343763 HVSMEg0006L01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006L01f, mRNA sequence
Length = 500
Score = 52.0 bits (26), Expect = 1e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgattg 156
|||||||||||||||||||| || ||||||||||
Sbjct: 18 ttcgggaagctcttctttgccttctgggtgattg 51
>gb|AV913277.1|AV913277 AV913277 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i03 5', mRNA sequence
Length = 631
Score = 52.0 bits (26), Expect = 1e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgattg 156
|||||||||||||||||||| || ||||||||||
Sbjct: 292 ttcgggaagctcttctttgccttctgggtgattg 325
>gb|AV913278.1|AV913278 AV913278 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i04 5', mRNA sequence
Length = 604
Score = 52.0 bits (26), Expect = 1e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgattg 156
|||||||||||||||||||| || ||||||||||
Sbjct: 291 ttcgggaagctcttctttgccttctgggtgattg 324
>gb|AV914152.1|AV914152 AV914152 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4p09 5', mRNA sequence
Length = 583
Score = 52.0 bits (26), Expect = 1e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgattg 156
|||||||||||||||||||| || ||||||||||
Sbjct: 472 ttcgggaagctcttctttgccttctgggtgattg 505
>gb|AV914933.1|AV914933 AV914933 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9b06 5', mRNA sequence
Length = 654
Score = 52.0 bits (26), Expect = 1e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgattg 156
|||||||||||||||||||| || ||||||||||
Sbjct: 473 ttcgggaagctcttctttgccttctgggtgattg 506
>gb|AV918571.1|AV918571 AV918571 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i03 3', mRNA sequence
Length = 598
Score = 52.0 bits (26), Expect = 1e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 123 ttcgggaagctcttctttgcattttgggtgattg 156
|||||||||||||||||||| || ||||||||||
Sbjct: 504 ttcgggaagctcttctttgccttctgggtgattg 471
>gb|AV918572.1|AV918572 AV918572 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21i04 3', mRNA sequence
Length = 649
Score = 52.0 bits (26), Expect = 1e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 123 ttcgggaagctcttctttgcattttgggtgattg 156
|||||||||||||||||||| || ||||||||||
Sbjct: 464 ttcgggaagctcttctttgccttctgggtgattg 431
>gb|AV919198.1|AV919198 AV919198 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4p09 3', mRNA sequence
Length = 631
Score = 52.0 bits (26), Expect = 1e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 123 ttcgggaagctcttctttgcattttgggtgattg 156
|||||||||||||||||||| || ||||||||||
Sbjct: 521 ttcgggaagctcttctttgccttctgggtgattg 488
>gb|AV920051.1|AV920051 AV920051 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9b06 3', mRNA sequence
Length = 680
Score = 52.0 bits (26), Expect = 1e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 123 ttcgggaagctcttctttgcattttgggtgattg 156
|||||||||||||||||||| || ||||||||||
Sbjct: 521 ttcgggaagctcttctttgccttctgggtgattg 488
>gb|AV925215.1|AV925215 AV925215 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22e04 5', mRNA sequence
Length = 656
Score = 52.0 bits (26), Expect = 1e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgattg 156
|||||||||||||||||||| || ||||||||||
Sbjct: 480 ttcgggaagctcttctttgccttctgggtgattg 513
>gb|AV930365.1|AV930365 AV930365 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd22e04 3', mRNA sequence
Length = 604
Score = 52.0 bits (26), Expect = 1e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 123 ttcgggaagctcttctttgcattttgggtgattg 156
|||||||||||||||||||| || ||||||||||
Sbjct: 387 ttcgggaagctcttctttgccttctgggtgattg 354
>gb|AV934882.1|AV934882 AV934882 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2a04 3', mRNA sequence
Length = 650
Score = 52.0 bits (26), Expect = 1e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 123 ttcgggaagctcttctttgcattttgggtgattg 156
|||||||||||||||||||| || ||||||||||
Sbjct: 521 ttcgggaagctcttctttgccttctgggtgattg 488
>gb|AV936150.1|AV936150 AV936150 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal10e13 3', mRNA sequence
Length = 616
Score = 52.0 bits (26), Expect = 1e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 123 ttcgggaagctcttctttgcattttgggtgattg 156
|||||||||||||||||||| || ||||||||||
Sbjct: 507 ttcgggaagctcttctttgccttctgggtgattg 474
>gb|BM816138.1|BM816138 HC109B12_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC109B12_T3.ab1 similar to (AF200528) cellulose
synthase-4 [Zea mays],(AF200529) cellulose synthase-5
[Zea mays],(AF200533) cellulose synthase-9 [Zea
mays],cellulose synthase catalytic subunit [Arabidopsis
thaliana],unnamed protein product [Arabidopsis
thaliana],, mRNA sequence
Length = 880
Score = 52.0 bits (26), Expect = 1e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgattg 156
|||||||||||||||||||| || ||||||||||
Sbjct: 671 ttcgggaagctcttctttgccttctgggtgattg 704
>gb|BM816139.1|BM816139 HC105G09_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105G09_T3.ab1 similar to (AF200528) cellulose
synthase-4 [Zea mays],(AF200529) cellulose synthase-5
[Zea mays],(AF200533) cellulose synthase-9 [Zea
mays],cellulose synthase catalytic subunit [Arabidopsis
thaliana],unnamed protein product [Arabidopsis
thaliana],, mRNA sequence
Length = 916
Score = 52.0 bits (26), Expect = 1e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgattg 156
|||||||||||||||||||| || ||||||||||
Sbjct: 433 ttcgggaagctcttctttgccttctgggtgattg 466
>gb|BJ466285.1|BJ466285 BJ466285 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31h15 3', mRNA sequence
Length = 669
Score = 52.0 bits (26), Expect = 1e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 123 ttcgggaagctcttctttgcattttgggtgattg 156
|||||||||||||||||||| || ||||||||||
Sbjct: 480 ttcgggaagctcttctttgccttctgggtgattg 447
>gb|BQ465284.1|BQ465284 HU03C22r HU Hordeum vulgare subsp. vulgare cDNA clone HU03C22
5-PRIME, mRNA sequence
Length = 643
Score = 52.0 bits (26), Expect = 1e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgattg 156
|||||||||||||||||||| || ||||||||||
Sbjct: 290 ttcgggaagctcttctttgccttctgggtgattg 323
>gb|BM370580.2|BM370580 EBro08_SQ004_K11_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ004_K11 5', mRNA sequence
Length = 606
Score = 52.0 bits (26), Expect = 1e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgattg 156
|||||||||||||||||||| || ||||||||||
Sbjct: 52 ttcgggaagctcttctttgccttctgggtgattg 85
>gb|BQ766406.1|BQ766406 EBro08_SQ005_L20_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_L20 5', mRNA sequence
Length = 538
Score = 52.0 bits (26), Expect = 1e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgattg 156
|||||||||||||||||||| || ||||||||||
Sbjct: 80 ttcgggaagctcttctttgccttctgggtgattg 113
>gb|BU990492.1|BU990492 HF25D10r HF Hordeum vulgare subsp. vulgare cDNA clone HF25D10
5-PRIME, mRNA sequence
Length = 621
Score = 52.0 bits (26), Expect = 1e-005
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgattg 156
|||||||||||||||||||| || ||||||||||
Sbjct: 312 ttcgggaagctcttctttgccttctgggtgattg 345
>gb|CA017356.1|CA017356 HV12L21u HV Hordeum vulgare subsp. vulgare cDNA clone HV12L21
3-PRIME, mRNA sequence
Length = 515
Score = 52.0 bits (26), Expect = 1e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 123 ttcgggaagctcttctttgcattttgggtgattg 156
|||||||||||||||||||| || ||||||||||
Sbjct: 505 ttcgggaagctcttctttgccttctgggtgattg 472
>gb|AV925770.1|AV925770 AV925770 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25l19 5', mRNA sequence
Length = 425
Score = 50.1 bits (25), Expect = 4e-005
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgatt 155
|||||||||||||||||||| || |||||||||
Sbjct: 381 ttcgggaagctcttctttgccttctgggtgatt 413
>gb|AV930906.1|AV930906 AV930906 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25l19 3', mRNA sequence
Length = 505
Score = 50.1 bits (25), Expect = 4e-005
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 123 ttcgggaagctcttctttgcattttgggtgatt 155
|||||||||||||||||||| || |||||||||
Sbjct: 304 ttcgggaagctcttctttgccttctgggtgatt 272
>gb|AV931092.1|AV931092 AV931092 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i05 3', mRNA sequence
Length = 658
Score = 50.1 bits (25), Expect = 4e-005
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 123 ttcgggaagctcttctttgcattttgggtgatt 155
|||||||||||||||||||| || |||||||||
Sbjct: 360 ttcgggaagctcttctttgccttctgggtgatt 328
>gb|AV931093.1|AV931093 AV931093 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i06 3', mRNA sequence
Length = 658
Score = 50.1 bits (25), Expect = 4e-005
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 123 ttcgggaagctcttctttgcattttgggtgatt 155
|||||||||||||||||||| || |||||||||
Sbjct: 367 ttcgggaagctcttctttgccttctgggtgatt 335
>gb|BQ468619.1|BQ468619 HM01M13T HM Hordeum vulgare subsp. vulgare cDNA clone HM01M13
5-PRIME, mRNA sequence
Length = 653
Score = 50.1 bits (25), Expect = 4e-005
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgatt 155
|||||||||||||||||||| || |||||||||
Sbjct: 402 ttcgggaagctcttctttgccttctgggtgatt 434
>gb|BI776485.2|BI776485 EBpi05_SQ001_J01_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ001_J01 5', mRNA sequence
Length = 518
Score = 50.1 bits (25), Expect = 4e-005
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgatt 155
|||||||||||||||||||| || |||||||||
Sbjct: 313 ttcgggaagctcttctttgccttctgggtgatt 345
>gb|BU967165.1|BU967165 HB03H16r BC Hordeum vulgare subsp. vulgare cDNA clone HB03H16
5-PRIME, mRNA sequence
Length = 471
Score = 50.1 bits (25), Expect = 4e-005
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgatt 155
|||||||||||||||||||| || |||||||||
Sbjct: 83 ttcgggaagctcttctttgccttctgggtgatt 115
>gb|BU967242.1|BU967242 HB03K11r BC Hordeum vulgare subsp. vulgare cDNA clone HB03K11
5-PRIME, mRNA sequence
Length = 577
Score = 50.1 bits (25), Expect = 4e-005
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgatt 155
|||||||||||||||||||| || |||||||||
Sbjct: 307 ttcgggaagctcttctttgccttctgggtgatt 339
>gb|BU986849.1|BU986849 HF13B10r HF Hordeum vulgare subsp. vulgare cDNA clone HF13B10
5-PRIME, mRNA sequence
Length = 622
Score = 50.1 bits (25), Expect = 4e-005
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgatt 155
|||||||||||||||||||| || |||||||||
Sbjct: 474 ttcgggaagctcttctttgccttctgggtgatt 506
>gb|BU988138.1|BU988138 HF16M09r HF Hordeum vulgare subsp. vulgare cDNA clone HF16M09
5-PRIME, mRNA sequence
Length = 643
Score = 50.1 bits (25), Expect = 4e-005
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgatt 155
|||||||||||||||||||| || |||||||||
Sbjct: 571 ttcgggaagctcttctttgccttctgggtgatt 603
>gb|CA025257.1|CA025257 HZ51J24r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51J24
5-PRIME, mRNA sequence
Length = 463
Score = 50.1 bits (25), Expect = 4e-005
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgcattttgggtgatt 155
|||||||||||||||||||| || |||||||||
Sbjct: 391 ttcgggaagctcttctttgccttctgggtgatt 423
>gb|CB860194.1|CB860194 HI12P13w HI Hordeum vulgare subsp. vulgare cDNA clone HI12P13
3-PRIME, mRNA sequence
Length = 651
Score = 50.1 bits (25), Expect = 4e-005
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 123 ttcgggaagctcttctttgcattttgggtgatt 155
|||||||||||||||||||| || |||||||||
Sbjct: 360 ttcgggaagctcttctttgccttctgggtgatt 328
>gb|CB876338.1|CB876338 HX10P19w HX Hordeum vulgare subsp. vulgare cDNA clone HX10P19
3-PRIME, mRNA sequence
Length = 616
Score = 50.1 bits (25), Expect = 4e-005
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 123 ttcgggaagctcttctttgcattttgggtgatt 155
|||||||||||||||||||| || |||||||||
Sbjct: 303 ttcgggaagctcttctttgccttctgggtgatt 271
>gb|AV926207.1|AV926207 AV926207 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd18i05 5', mRNA sequence
Length = 668
Score = 40.1 bits (20), Expect = 0.038
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 123 ttcgggaagctcttctttgc 142
||||||||||||||||||||
Sbjct: 648 ttcgggaagctcttctttgc 667
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,630
Number of Sequences: 312970
Number of extensions: 16630
Number of successful extensions: 4486
Number of sequences better than 0.5: 48
Number of HSP's better than 0.5 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4394
Number of HSP's gapped (non-prelim): 91
length of query: 290
length of database: 175,134,539
effective HSP length: 18
effective length of query: 272
effective length of database: 169,501,079
effective search space: 46104293488
effective search space used: 46104293488
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)