BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD12g05.sg.3.2
(900 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ740005.1|BQ740005 HC01H01 HC Hordeum vulgare subsp. vu... 196 9e-049
gb|AL505184.1|AL505184 AL505184 Hordeum vulgare Barke roots... 194 3e-048
gb|BF267513.1|BF267513 HV_CEa0018C13f Hordeum vulgare seedl... 176 8e-043
gb|BG344503.2|BG344503 HVSMEg0009H09f Hordeum vulgare pre-a... 168 2e-040
gb|BQ659383.1|BQ659383 HE01C10u HE Hordeum vulgare subsp. v... 168 2e-040
gb|AL502789.1|AL502789 AL502789 Hordeum vulgare Barke roots... 159 2e-037
gb|AL510966.1|AL510966 AL510966 Hordeum vulgare Barke devel... 147 7e-034
gb|BQ469495.1|BQ469495 HM04P17r HM Hordeum vulgare subsp. v... 141 5e-032
gb|BU980134.1|BU980134 HA18L12r HA Hordeum vulgare subsp. v... 141 5e-032
gb|BQ768059.1|BQ768059 EBro08_SQ010_H13_R root, 3 week, dro... 131 4e-029
gb|BI947030.1|BI947030 HVSMEl0003F03f Hordeum vulgare spike... 123 1e-026
gb|CB882590.1|CB882590 HL02E21w HL Hordeum vulgare subsp. v... 121 4e-026
gb|BG368403.1|BG368403 HVSMEi0018G12f Hordeum vulgare 20 DA... 113 1e-023
gb|BE456033.3|BE456033 HVSMEg0019H01f Hordeum vulgare pre-a... 111 4e-023
gb|BQ461122.1|BQ461122 HE01C10r HE Hordeum vulgare subsp. v... 111 4e-023
gb|BQ468056.1|BQ468056 HR01M23r HR Hordeum vulgare subsp. v... 111 4e-023
gb|BI780821.2|BI780821 EBma05_SQ001_A11_R maternal, 12 DPA,... 111 4e-023
gb|BQ768106.1|BQ768106 EBro08_SQ010_O18_R root, 3 week, dro... 111 4e-023
gb|CA019925.1|CA019925 HV13L19r HV Hordeum vulgare subsp. v... 111 4e-023
gb|BM444900.1|BM444900 EBem09_SQ006_N12_R embryo, 1 Day ger... 109 2e-022
gb|BQ767248.1|BQ767248 EBro08_SQ008_J12_R root, 3 week, dro... 109 2e-022
gb|CA029314.1|CA029314 HZ64N12r HZ Hordeum vulgare subsp. v... 96 2e-018
gb|CA021037.1|CA021037 HZ38O19r HZ Hordeum vulgare subsp. v... 90 1e-016
gb|BG368408.1|BG368408 HVSMEi0018I02f Hordeum vulgare 20 DA... 84 9e-015
gb|CA027775.1|CA027775 HZ59P23r HZ Hordeum vulgare subsp. v... 76 2e-012
gb|AL502459.1|AL502459 AL502459 Hordeum vulgare Barke roots... 52 3e-005
gb|BQ760373.1|BQ760373 EBro01_SQ002_E24_R root, 3 week, hyd... 52 3e-005
gb|BF253829.2|BF253829 HVSMEf0002D20f Hordeum vulgare seedl... 40 0.12
gb|BE421292.1|BE421292 HWM007.G09 ITEC HWM Barley Leaf Libr... 38 0.49
gb|AL450814.1|AL450814 AL450814 Hordeum vulgare Barke etiol... 38 0.49
gb|AL499983.1|AL499983 AL499983 Hordeum vulgare Barke etiol... 38 0.49
gb|AL500260.1|AL500260 AL500260 Hordeum vulgare Barke etiol... 38 0.49
gb|BG299626.1|BG299626 HVSMEa0021C16f Hordeum vulgare seedl... 38 0.49
gb|BI956726.1|BI956726 HVSMEn0005A03f Hordeum vulgare rachi... 38 0.49
gb|BI957673.1|BI957673 HVSMEn0010J17f Hordeum vulgare rachi... 38 0.49
gb|BG415738.1|BG415738 HVSMEk0007K11f Hordeum vulgare testa... 38 0.49
gb|AJ463413.1|AJ463413 AJ463413 S00002 Hordeum vulgare subs... 38 0.49
gb|BJ462810.1|BJ462810 BJ462810 K. Sato unpublished cDNA li... 38 0.49
gb|BQ660323.1|BQ660323 HI01O22w HI Hordeum vulgare subsp. v... 38 0.49
gb|BI780856.2|BI780856 EBma05_SQ001_D14_R maternal, 12 DPA,... 38 0.49
gb|BQ765859.1|BQ765859 EBro03_SQ008_J08_R root, 3 week, wat... 38 0.49
gb|BQ766516.1|BQ766516 EBro08_SQ006_F10_R root, 3 week, dro... 38 0.49
gb|BU967534.1|BU967534 HB04J18r BC Hordeum vulgare subsp. v... 38 0.49
gb|BU974732.1|BU974732 HB28O13r BC Hordeum vulgare subsp. v... 38 0.49
gb|BU975499.1|BU975499 HB31E12r BC Hordeum vulgare subsp. v... 38 0.49
gb|BU979505.1|BU979505 HA16G04r HA Hordeum vulgare subsp. v... 38 0.49
gb|BU993935.1|BU993935 HM05A13r HM Hordeum vulgare subsp. v... 38 0.49
gb|CA023782.1|CA023782 HZ47G07r HZ Hordeum vulgare subsp. v... 38 0.49
>gb|BQ740005.1|BQ740005 HC01H01 HC Hordeum vulgare subsp. vulgare cDNA clone HC01H01
similar to Probable
3-beta-hydroxysteroid-delta(8),delta(7)-isomerase
(Cholestenol delta-isomerase) (Delta8-delta7 sterol
isomerase) (D8-D7 sterol isomerase)
gi|10697192|dbj|BAB16323...., mRNA sequence
Length = 614
Score = 196 bits (99), Expect = 9e-049
Identities = 387/483 (80%)
Strand = Plus / Plus
Query: 136 ctggaccttccgggtttcgtgccgctgaagctgtcccaggtcgagatcctcgtgtcctac 195
|||||||| ||||| | |||||||||| ||| ||||| |||||||||| | | | |||
Sbjct: 120 ctggacctcccgggctacgtgccgctgcggctcacccagctcgagatcctggcggcatac 179
Query: 196 ctcggcgcctccgtcttcgttttcctcgccgtctggctcgtctccggaagatgtgtcaga 255
|||||| ||||| ||||||| || ||||||||||||| ||||||| ||||| |||
Sbjct: 180 ctcggcacctccctcttcgtcgtcgccgccgtctggctcctctccgggagatgccgcagg 239
Query: 256 ttatccaagaccgaccgtctgctcatgtgctggtgggcatttacagggttgacccacata 315
| ||| | ||||||| |||||||||||||||||||| || || || | |||||||||
Sbjct: 240 ctgtccggggccgaccgcctgctcatgtgctggtgggccttcaccggcctcacccacata 299
Query: 316 atgatcgaggggccctttgtcttcactcctgatttcttcaagaaggagaaccccaatttc 375
| |||||||||||||| ||||| || || | |||||||| ||| | |||||| |||
Sbjct: 300 ctcatcgaggggcccttcgtctttacccccggtttcttcaccaagaccagccccaacttc 359
Query: 376 tttgatgaagtttggaaagagtatagtaagggagactctaggtatgttgctagggacact 435
|| || ||||| ||||| ||||| || ||||| ||||| ||||| || || ||||||||
Sbjct: 360 ttcgacgaagtctggaaggagtacagcaagggtgactccaggtacgtcgccagggacacc 419
Query: 436 gcaactgttacggtcgaagggatcaccgctgtattggaaggccctgcatcactacttgct 495
|| || || || |||||||| ||||| || || ||||||||||||| || || || ||
Sbjct: 420 gccaccgtcaccgtcgaaggaatcacggccgtgctggaaggccctgcctcgctgctcgcg 479
Query: 496 gtctacgctattgcatccaggaagtccttcagccacattctccagttcgccgtctgtctg 555
||||| || || ||||| | ||||| | |||||| || ||||||||||| || || |||
Sbjct: 480 gtctatgcgatcgcatcgcgcaagtcgtacagccatatcctccagttcgcggtgtgcctg 539
Query: 556 ggccagctctacggatgcctggtttacttcatcaccgcgtacttggacggcttcaacttc 615
|| || |||||||||||| | || ||||||| |||||| |||||||||||||||||||||
Sbjct: 540 ggtcaactctacggatgcatcgtctacttcaccaccgcctacttggacggcttcaacttc 599
Query: 616 tgg 618
|||
Sbjct: 600 tgg 602
>gb|AL505184.1|AL505184 AL505184 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07K12V 5', mRNA sequence
Length = 700
Score = 194 bits (98), Expect = 3e-048
Identities = 420/526 (79%), Gaps = 2/526 (0%)
Strand = Plus / Plus
Query: 139 gaccttccgggtttcgtgccgctgaagctgtcccaggtcgagatcctcgtgtcctacctc 198
||||| ||||| | |||||||||| ||| ||||| |||||||||| | | | ||||||
Sbjct: 116 gacctcccgggctacgtgccgctgcggctcacccagctcgagatcctggcggcatacctc 175
Query: 199 ggcgcctccgtcttcgttttcctcgccgtctggctcgtctccggaagatgtgtcagatta 258
||| ||||| || |||| | ||||||||||||| ||||||| ||||| ||| |
Sbjct: 176 ggcacctccctcctcgtcgncgccgccgtctggctcctctccgggagatgccgcaggctg 235
Query: 259 tccaagaccgaccgtctgctcatgtgctggtgggcatttacagggttgacccacataatg 318
||| | ||||||| |||||||||||||||||||| || || || | ||||||||| |
Sbjct: 236 tccggggccgaccgcctgctcatgtgctggtgggccttcaccggcctcacccacatactc 295
Query: 319 atcgaggggccctttgtcttcactcctgatttcttcaagaaggagaaccccaatttcttt 378
|||||||||||||| ||||| || || | ||||||| ||| | |||||| |||||
Sbjct: 296 atcgaggggcccttcgtctttacccccggnttcttcaccaagaccagccccaacttcttc 355
Query: 379 gatgaagtttggaaagagtatagtaagggagactctaggtatgttgctagggacactgca 438
|| ||||| ||||| ||||| || ||||| ||||| ||||| || || |||||||| ||
Sbjct: 356 gacgaagtctggaaggagtacagcaagggtgactccaggtacgtcgccagggacaccgcc 415
Query: 439 actgttacggtcgaagggatcaccgctgtattggaaggccctgcatcactacttgctgtc 498
|| || || |||||||| ||||| || || ||||||||||||| || || || || |||
Sbjct: 416 accgtcaccgtcgaaggaatcacggccgtgctggaaggccctgcctcgctgctcgcggtc 475
Query: 499 tacgctattgcatccaggaagtccttcagccacattctccagttcgccgtctgtctgggc 558
|| || || ||||| | ||||| | |||||| || ||||||||||| || || |||||
Sbjct: 476 tatgcgatcgcatcgngcaagtcgtacagccatatcctccagttcgcggtgtgcctgggt 535
Query: 559 cagctctacggatgcctggtttacttcatcaccgcgtacttgg-acggcttcaacttctg 617
||||||||||||||| | || ||||||| |||||| ||||||| ||||||||||||| ||
Sbjct: 536 cagctctacggatgcatcgtctacttcaccaccgcctacttggnacggcttcaacttntg 595
Query: 618 ggtcggcccgttctacttctgggcgta-tttcattggcgcaaacag 662
| || | ||||||||||||||||| || |||||| |||||||||||
Sbjct: 596 gatcagtccgttctacttctgggcatattttcatcggcgcaaacag 641
>gb|BF267513.1|BF267513 HV_CEa0018C13f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0018C13f, mRNA sequence
Length = 797
Score = 176 bits (89), Expect = 8e-043
Identities = 320/397 (80%)
Strand = Plus / Plus
Query: 266 ccgaccgtctgctcatgtgctggtgggcatttacagggttgacccacataatgatcgagg 325
||||||| ||||||||||||||||||| || || || | ||||||||| | |||||||
Sbjct: 248 ccgaccgcctgctcatgtgctggtgggacttcaccggcctcacccacatactcatcgagg 307
Query: 326 ggccctttgtcttcactcctgatttcttcaagaaggagaaccccaatttctttgatgaag 385
||||||| ||||| || || | |||||||| ||| | |||||| ||||| || ||||
Sbjct: 308 ggcccttcgtctttacccccggtttcttcaccaagaccagccccaacttcttcgacgaag 367
Query: 386 tttggaaagagtatagtaagggagactctaggtatgttgctagggacactgcaactgtta 445
| ||||| ||||| || ||||| ||||| ||||| || || |||||||| || || || |
Sbjct: 368 tctggaaggagtacagcaagggtgactccaggtacgtcgccagggacaccgccaccgtca 427
Query: 446 cggtcgaagggatcaccgctgtattggaaggccctgcatcactacttgctgtctacgcta 505
| |||||||| ||||| || || ||||||||||||| || || || || ||||| || |
Sbjct: 428 ccgtcgaaggaatcacggccgtgctggaaggccctgcctcgctgctcgcggtctatgcga 487
Query: 506 ttgcatccaggaagtccttcagccacattctccagttcgccgtctgtctgggccagctct 565
| ||||| | ||||| | |||||| || || |||||||| || || ||||| || ||||
Sbjct: 488 tcgcatcgcgcaagtcgtacagccatatcctacagttcgcggtgtgcctgggtcaactct 547
Query: 566 acggatgcctggtttacttcatcaccgcgtacttggacggcttcaacttctgggtcggcc 625
|||||||| | || ||||| | |||||| |||||||||||||| ||||||||| || | |
Sbjct: 548 acggatgcatcgtctactttaccaccgcctacttggacggcttaaacttctggatcagtc 607
Query: 626 cgttctacttctgggcgtatttcattggcgcaaacag 662
|||||||||||||||| ||||| || |||||||||||
Sbjct: 608 cgttctacttctgggcatattttatcggcgcaaacag 644
>gb|BG344503.2|BG344503 HVSMEg0009H09f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0009H09f, mRNA sequence
Length = 810
Score = 168 bits (85), Expect = 2e-040
Identities = 417/525 (79%), Gaps = 2/525 (0%)
Strand = Plus / Plus
Query: 136 ctggaccttccgggtttcgtgccgctgaagctgtcccaggtcgagatcctcgtgtcctac 195
|||||||| ||||| | |||||||||| ||| ||||| |||||||||| | | | |||
Sbjct: 117 ctggacctcccgggctacgtgccgctgcggctcacccagctcgagatcctggcggcatac 176
Query: 196 ctcggcgcctccgtcttcgttttcctcgccgtctggctcgtctccggaagatgtgtcaga 255
|||||| ||||| ||||||| || ||||||||||||| ||||||| ||||| |||
Sbjct: 177 ctcggcacctccctcttcgtcgtcgccgccgtctggctcctctccgggagatgccgcagg 236
Query: 256 ttatccaagaccgaccgtctgctcatgtgctggtgggcatttacagggttgacccacata 315
| ||| | ||||||| |||||||||||||||||||| || || || | |||||||||
Sbjct: 237 ctgtccggggccgaccgcctgctcatgtgctggtgggccttcaccggcctcacccacata 296
Query: 316 atgatcgaggggccctttgtcttcactcctgatttcttcaagaaggagaaccccaatttc 375
| |||||||||||||| ||||| || || | |||||||| ||| | |||||| |||
Sbjct: 297 ctcatcgaggggcccttcgtctttacccccggtttcttcaccaagaccagccccaacttc 356
Query: 376 tttgatgaagtttggaaagagtatagtaagggagactctaggtatgttgctagggacact 435
|| || ||||| ||||| ||||| || ||||| ||||| ||||| || || ||||||||
Sbjct: 357 ttcgacgaagtctggaaggagtacagcaagggtgactccaggtacgtcgccagggacacc 416
Query: 436 gcaactgttacggtcgaagggatcaccgctgtattggaaggccctgcatcactacttgct 495
|| || || || |||||| | ||||| || || ||||||||||||| || || || ||
Sbjct: 417 gccaccgtcaccgtcgaaagaatcacggccgtgctggaaggccctgcctcgctgctcgcg 476
Query: 496 gtctacgctattgcatccaggaagtccttcagccacattctccagttcgccgtctgtctg 555
||||| || || ||||| | ||||| | |||||| || ||||| ||||| || || |||
Sbjct: 477 gtctatgcgatcgcatcgcgcaagtcgtacagccatatcctccaattcgcggtgtgcctg 536
Query: 556 ggccagctctacggatgcctggtttacttcatcaccgcgtacttggacggcttcaacttc 615
|| || |||||||||||| | || ||||||| |||||| |||||||||||||| |||||
Sbjct: 537 ggtcaactctacggatgcatcgtctacttca-caccgcctacttggacggcttacacttc 595
Query: 616 tgggtcggcccgttctacttctgggcgtatttcattggcgcaaac 660
||| || | |||| |||||| ||||| | |||||| |||||||||
Sbjct: 596 tggatcagtccgtgctacttttgggc-tttttcatcggcgcaaac 639
>gb|BQ659383.1|BQ659383 HE01C10u HE Hordeum vulgare subsp. vulgare cDNA clone HE01C10
3-PRIME, mRNA sequence
Length = 499
Score = 168 bits (85), Expect = 2e-040
Identities = 223/269 (82%)
Strand = Plus / Minus
Query: 394 gagtatagtaagggagactctaggtatgttgctagggacactgcaactgttacggtcgaa 453
||||| || ||||| ||||| ||||| || || |||||||| || || || || ||||||
Sbjct: 498 gagtacagcaagggtgactccaggtacgtcgccagggacaccgccaccgtcaccgtcgaa 439
Query: 454 gggatcaccgctgtattggaaggccctgcatcactacttgctgtctacgctattgcatcc 513
|| ||||| || || ||||||||||||| || || || || ||||| || || |||||
Sbjct: 438 ggaatcacggccgtgctggaaggccctgcctcgctgctcgcggtctatgcgatcgcatcg 379
Query: 514 aggaagtccttcagccacattctccagttcgccgtctgtctgggccagctctacggatgc 573
| ||||| | |||||| || ||||||||||| || || ||||| |||||||||||||||
Sbjct: 378 cgcaagtcgtacagccatatcctccagttcgcggtgtgcctgggtcagctctacggatgc 319
Query: 574 ctggtttacttcatcaccgcgtacttggacggcttcaacttctgggtcggcccgttctac 633
| || ||||||| |||||| |||||||||||||||||||||||| || | |||||||||
Sbjct: 318 atcgtctacttcaccaccgcctacttggacggcttcaacttctggatcagtccgttctac 259
Query: 634 ttctgggcgtatttcattggcgcaaacag 662
|||||||| |||||||| |||||||||||
Sbjct: 258 ttctgggcatatttcatcggcgcaaacag 230
>gb|AL502789.1|AL502789 AL502789 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08L16u 3', mRNA sequence
Length = 511
Score = 159 bits (80), Expect = 2e-037
Identities = 197/236 (83%)
Strand = Plus / Minus
Query: 427 agggacactgcaactgttacggtcgaagggatcaccgctgtattggaaggccctgcatca 486
|||||||| || || || || |||||||| ||||| || || ||||||||||||| ||
Sbjct: 483 agggacaccgccaccgtcaccgtcgaaggaatcacggccgtgctggaaggccctgcctcg 424
Query: 487 ctacttgctgtctacgctattgcatccaggaagtccttcagccacattctccagttcgcc 546
|| || || ||||| || || ||||| | ||||| | |||||| || |||||||||||
Sbjct: 423 ctgctcgcggtctatgcgatcgcatcgcgcaagtcgtacagccatatcctccagttcgcg 364
Query: 547 gtctgtctgggccagctctacggatgcctggtttacttcatcaccgcgtacttggacggc 606
|| || ||||| ||||||||||||||| | || ||||||| |||||| ||||||||||||
Sbjct: 363 gtgtgcctgggtcagctctacggatgcatcgtctacttcaccaccgcctacttggacggc 304
Query: 607 ttcaacttctgggtcggcccgttctacttctgggcgtatttcattggcgcaaacag 662
|||||||||||| || | ||||||||||||||||| |||||||| |||||||||||
Sbjct: 303 ttcaacttctggatcagtccgttctacttctgggcatatttcatcggcgcaaacag 248
>gb|AL510966.1|AL510966 AL510966 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06J02u 3',
mRNA sequence
Length = 544
Score = 147 bits (74), Expect = 7e-034
Identities = 195/236 (82%)
Strand = Plus / Minus
Query: 427 agggacactgcaactgttacggtcgaagggatcaccgctgtattggaaggccctgcatca 486
|||||||| || || || || |||||||| ||||| || || ||||||||||||| ||
Sbjct: 500 agggacaccgcnaccgtcaccgtcgaaggaatcacggccgtgctggaaggccctgcctcg 441
Query: 487 ctacttgctgtctacgctattgcatccaggaagtccttcagccacattctccagttcgcc 546
|| || || || || || || ||||| | ||||| | |||||| || |||||||||||
Sbjct: 440 ctgctcgcggtttatgcgatcgcatcgcgcaagtcgtacagccatatcctccagttcgcg 381
Query: 547 gtctgtctgggccagctctacggatgcctggtttacttcatcaccgcgtacttggacggc 606
|| || ||||| ||||||||||||||| | || ||||||| |||||| ||||||||||||
Sbjct: 380 gtgtgcctgggtcagctctacggatgcatcgtctacttcaccaccgcctacttggacggc 321
Query: 607 ttcaacttctgggtcggcccgttctacttctgggcgtatttcattggcgcaaacag 662
|||||||||||| || | ||||||||||||||||| ||||| || |||||||||||
Sbjct: 320 ttcaacttctggatcagtccgttctacttctgggcatatttnatcggcgcaaacag 265
>gb|BQ469495.1|BQ469495 HM04P17r HM Hordeum vulgare subsp. vulgare cDNA clone HM04P17
5-PRIME, mRNA sequence
Length = 578
Score = 141 bits (71), Expect = 5e-032
Identities = 344/435 (79%)
Strand = Plus / Plus
Query: 139 gaccttccgggtttcgtgccgctgaagctgtcccaggtcgagatcctcgtgtcctacctc 198
||||| ||||| | |||||||||| ||| ||||| |||||||||| | | | ||||||
Sbjct: 141 gacctcccgggctacgtgccgctgcggctcacccagctcgagatcctggcggcatacctc 200
Query: 199 ggcgcctccgtcttcgttttcctcgccgtctggctcgtctccggaagatgtgtcagatta 258
||| ||||| || |||| || ||||||||||||| ||||||| ||||| ||| |
Sbjct: 201 ggcacctccctcctcgtcgtcgccgccgtctggctcctctccgggagatgccgcaggctg 260
Query: 259 tccaagaccgaccgtctgctcatgtgctggtgggcatttacagggttgacccacataatg 318
||| | ||||||| |||||||||||||||||||| || || || | ||||||||| |
Sbjct: 261 tccggggccgaccgcctgctcatgtgctggtgggccttcaccggcctcacccacatactc 320
Query: 319 atcgaggggccctttgtcttcactcctgatttcttcaagaaggagaaccccaatttcttt 378
|||||||||||||| ||||| || || | |||||||| ||| | |||||| |||||
Sbjct: 321 atcgaggggcccttcgtctttacccccggtttcttcaccaagaccagccccaacttcttc 380
Query: 379 gatgaagtttggaaagagtatagtaagggagactctaggtatgttgctagggacactgca 438
|| ||||| ||||| ||||| || ||||| ||||| ||||| || || |||||||| ||
Sbjct: 381 gacgaagtctggaaggagtacagcaagggtgactccaggtacgtcgccagggacaccgcc 440
Query: 439 actgttacggtcgaagggatcaccgctgtattggaaggccctgcatcactacttgctgtc 498
|| || || |||||||| ||||| || || ||||||||||||| || || || || |||
Sbjct: 441 accgtcaccgtcgaaggaatcacggccgtgctggaaggccctgcctcgctgctcgcggtc 500
Query: 499 tacgctattgcatccaggaagtccttcagccacattctccagttcgccgtctgtctgggc 558
|| || || ||||| | ||||| | |||||| || ||||||||||| || || |||||
Sbjct: 501 tatgcgatcgcatcgcgcaagtcgtacagccatatcctccagttcgcggtgtgcctgggt 560
Query: 559 cagctctacggatgc 573
|||||||||||||||
Sbjct: 561 cagctctacggatgc 575
>gb|BU980134.1|BU980134 HA18L12r HA Hordeum vulgare subsp. vulgare cDNA clone HA18L12
5-PRIME, mRNA sequence
Length = 568
Score = 141 bits (71), Expect = 5e-032
Identities = 344/435 (79%)
Strand = Plus / Plus
Query: 139 gaccttccgggtttcgtgccgctgaagctgtcccaggtcgagatcctcgtgtcctacctc 198
||||| ||||| | |||||||||| ||| ||||| |||||||||| | | | ||||||
Sbjct: 127 gacctcccgggctacgtgccgctgcggctcacccagctcgagatcctggcggcatacctc 186
Query: 199 ggcgcctccgtcttcgttttcctcgccgtctggctcgtctccggaagatgtgtcagatta 258
||| ||||| || |||| || ||||||||||||| ||||||| ||||| ||| |
Sbjct: 187 ggcacctccctcctcgtcgtcgccgccgtctggctcctctccgggagatgccgcaggctg 246
Query: 259 tccaagaccgaccgtctgctcatgtgctggtgggcatttacagggttgacccacataatg 318
||| | ||||||| |||||||||||||||||||| || || || | ||||||||| |
Sbjct: 247 tccggggccgaccgcctgctcatgtgctggtgggccttcaccggcctcacccacatactc 306
Query: 319 atcgaggggccctttgtcttcactcctgatttcttcaagaaggagaaccccaatttcttt 378
|||||||||||||| ||||| || || | |||||||| ||| | |||||| |||||
Sbjct: 307 atcgaggggcccttcgtctttacccccggtttcttcaccaagaccagccccaacttcttc 366
Query: 379 gatgaagtttggaaagagtatagtaagggagactctaggtatgttgctagggacactgca 438
|| ||||| ||||| ||||| || ||||| ||||| ||||| || || |||||||| ||
Sbjct: 367 gacgaagtctggaaggagtacagcaagggtgactccaggtacgtcgccagggacaccgcc 426
Query: 439 actgttacggtcgaagggatcaccgctgtattggaaggccctgcatcactacttgctgtc 498
|| || || |||||||| ||||| || || ||||||||||||| || || || || |||
Sbjct: 427 accgtcaccgtcgaaggaatcacggccgtgctggaaggccctgcctcgctgctcgcggtc 486
Query: 499 tacgctattgcatccaggaagtccttcagccacattctccagttcgccgtctgtctgggc 558
|| || || ||||| | ||||| | |||||| || ||||||||||| || || |||||
Sbjct: 487 tatgcgatcgcatcgcgcaagtcgtacagccatatcctccagttcgcggtgtgcctgggt 546
Query: 559 cagctctacggatgc 573
|||||||||||||||
Sbjct: 547 cagctctacggatgc 561
>gb|BQ768059.1|BQ768059 EBro08_SQ010_H13_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ010_H13 5', mRNA sequence
Length = 369
Score = 131 bits (66), Expect = 4e-029
Identities = 99/110 (90%)
Strand = Plus / Plus
Query: 553 ctgggccagctctacggatgcctggtttacttcatcaccgcgtacttggacggcttcaac 612
||||| ||||||||||||||| | || ||||||| |||||| ||||||||||||||||||
Sbjct: 3 ctgggtcagctctacggatgcatcgtctacttcaccaccgcctacttggacggcttcaac 62
Query: 613 ttctgggtcggcccgttctacttctgggcgtatttcattggcgcaaacag 662
|||||| || | ||||||||||||||||| |||||||| |||||||||||
Sbjct: 63 ttctggatcagtccgttctacttctgggcatatttcatcggcgcaaacag 112
>gb|BI947030.1|BI947030 HVSMEl0003F03f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0003F03f, mRNA sequence
Length = 1022
Score = 123 bits (62), Expect = 1e-026
Identities = 323/410 (78%)
Strand = Plus / Plus
Query: 136 ctggaccttccgggtttcgtgccgctgaagctgtcccaggtcgagatcctcgtgtcctac 195
|||||||| ||||| | |||||||||| ||| ||||| |||||||||| | | | |||
Sbjct: 118 ctggacctcccgggctacgtgccgctgcggctcacccagctcgagatcctggcggcatac 177
Query: 196 ctcggcgcctccgtcttcgttttcctcgccgtctggctcgtctccggaagatgtgtcaga 255
|||||| ||||| ||||||| || ||||||||||||| ||||||| ||||| |||
Sbjct: 178 ctcggcacctccctcttcgtcgtcgccgccgtctggctcctctccgggagatgccgcagg 237
Query: 256 ttatccaagaccgaccgtctgctcatgtgctggtgggcatttacagggttgacccacata 315
| ||| | ||||||| |||||||||||||||||||| || || || | |||||||||
Sbjct: 238 ctgtccggggccgaccgcctgctcatgtgctggtgggccttcaccggcctcacccacata 297
Query: 316 atgatcgaggggccctttgtcttcactcctgatttcttcaagaaggagaaccccaatttc 375
| |||||||||||||| ||||| || || | |||||||| ||| | |||||| |||
Sbjct: 298 ctcatcgaggggcccttcgtctttacccccggtttcttcaccaagaccagccccaacttc 357
Query: 376 tttgatgaagtttggaaagagtatagtaagggagactctaggtatgttgctagggacact 435
|| || ||||| ||||| ||||| || ||||| ||||| ||||| ||||| ||||||||
Sbjct: 358 ttcgacgaagtctggaaggagtacagcaagggtgactccaggtacgttgccagggacacc 417
Query: 436 gcaactgttacggtcgaagggatcaccgctgtattggaaggccctgcatcactacttgct 495
| || || || || ||| | ||||| || || ||||||||||||| || || || ||
Sbjct: 418 ggcaccgtcaccgttgaaagaatcacggccgtgctggaaggccctgcctcgctgctcgcg 477
Query: 496 gtctacgctattgcatccaggaagtccttcagccacattctccagttcgc 545
||||| || || ||||| | ||||| | |||||| ||||||||||||||
Sbjct: 478 gtctatgcgatcgcatcgcgcaagtcgtacagccatattctccagttcgc 527
Score = 48.1 bits (24), Expect = 5e-004
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 630 ctacttctgggcgtatttcattggcgca 657
|||||||||||| |||||||||||||||
Sbjct: 611 ctacttctgggcctatttcattggcgca 638
>gb|CB882590.1|CB882590 HL02E21w HL Hordeum vulgare subsp. vulgare cDNA clone HL02E21
3-PRIME, mRNA sequence
Length = 560
Score = 121 bits (61), Expect = 4e-026
Identities = 246/308 (79%)
Strand = Plus / Plus
Query: 266 ccgaccgtctgctcatgtgctggtgggcatttacagggttgacccacataatgatcgagg 325
||||||| |||||||||||||||||||| || || || | ||||||||| | |||||||
Sbjct: 242 ccgaccgcctgctcatgtgctggtgggccttcaccggcctcacccacatactcatcgagg 301
Query: 326 ggccctttgtcttcactcctgatttcttcaagaaggagaaccccaatttctttgatgaag 385
||||||| ||||| || || | |||||||| ||| | |||||| ||||| || ||||
Sbjct: 302 ggcccttcgtctttacccccggtttcttcaccaagaccagccccaacttcttcgacgaag 361
Query: 386 tttggaaagagtatagtaagggagactctaggtatgttgctagggacactgcaactgtta 445
| ||||| ||||| || ||||| ||||| ||||| || || |||||||| || || || |
Sbjct: 362 tctggaaggagtacagcaagggtgactccaggtacgtcgccagggacaccgccaccgtca 421
Query: 446 cggtcgaagggatcaccgctgtattggaaggccctgcatcactacttgctgtctacgcta 505
| |||||||| ||||| || || ||||||||||||| || || || || ||||| || |
Sbjct: 422 ccgtcgaaggaatcacggccgtgctggaaggccctgcctcgctgctcgcggtctatgcga 481
Query: 506 ttgcatccaggaagtccttcagccacattctccagttcgccgtctgtctgggccagctct 565
| ||||| | ||||| | |||||| || ||||||||||| || || ||| | |||||||
Sbjct: 482 tcgcatcgcgcaagtcgtacagccatatcctccagttcgcggtgtgcctgngtcagctct 541
Query: 566 acggatgc 573
||||||||
Sbjct: 542 acggatgc 549
Score = 48.1 bits (24), Expect = 5e-004
Identities = 84/104 (80%)
Strand = Plus / Plus
Query: 139 gaccttccgggtttcgtgccgctgaagctgtcccaggtcgagatcctcgtgtcctacctc 198
||||| ||||| | |||||||||| ||| ||||| |||||||||| | | | ||||||
Sbjct: 128 gacctcccgggctacgtgccgctgcggctcacccagctcgagatcctggcggcatacctc 187
Query: 199 ggcgcctccgtcttcgttttcctcgccgtctggctcgtctccgg 242
||| ||||| || |||| || ||||||||||||| |||||||
Sbjct: 188 ggcacctccctcctcgtcgtcgccgccgtctggctcctctccgg 231
>gb|BG368403.1|BG368403 HVSMEi0018G12f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0018G12f, mRNA sequence
Length = 556
Score = 113 bits (57), Expect = 1e-023
Identities = 300/381 (78%)
Strand = Plus / Plus
Query: 193 tacctcggcgcctccgtcttcgttttcctcgccgtctggctcgtctccggaagatgtgtc 252
||||||||| ||||| ||||||| || ||||||||||||| ||||||| ||||| |
Sbjct: 176 tacctcggcacctccctcttcgtcgtcgccgccgtctggctcctctccgggagatgccgc 235
Query: 253 agattatccaagaccgaccgtctgctcatgtgctggtgggcatttacagggttgacccac 312
|| | ||| | || |||| |||||||||||||||||||| || || || | ||||||
Sbjct: 236 aggctgtccggggccaaccgcctgctcatgtgctggtgggccttcaccggcctcacccac 295
Query: 313 ataatgatcgaggggccctttgtcttcactcctgatttcttcaagaaggagaaccccaat 372
||| | |||||||||||||| ||||| || || | |||||||| ||| | ||||||
Sbjct: 296 atactcatcgaggggcccttcgtctttacccccggtttcttcaccaagaccagccccaac 355
Query: 373 ttctttgatgaagtttggaaagagtatagtaagggagactctaggtatgttgctagggac 432
||||| || ||||| ||||| ||||| || ||||| ||||| ||||| || || ||||||
Sbjct: 356 ttcttcgacgaagtctggaaggagtacagcaagggtgactccaggtacgtcgccagggac 415
Query: 433 actgcaactgttacggtcgaagggatcaccgctgtattggaaggccctgcatcactactt 492
|| || || || || |||||||| ||||| || || ||||||||||||| || || ||
Sbjct: 416 accgccaccgtcaccgtcgaaggaatcacggccgtgctggaaggccctgcctcgctgctc 475
Query: 493 gctgtctacgctattgcatccaggaagtccttcagccacattctccagttcgccgtctgt 552
|| ||||| || || ||||| | ||||| | |||||| || ||||| ||||| || ||
Sbjct: 476 gcggtctatgcgatcgcatcgcgcaagtcgtacagccatatcctccaattcgcggtgtgc 535
Query: 553 ctgggccagctctacggatgc 573
||||| || ||||||||||||
Sbjct: 536 ctgggtcaactctacggatgc 556
>gb|BE456033.3|BE456033 HVSMEg0019H01f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0019H01f, mRNA sequence
Length = 595
Score = 111 bits (56), Expect = 4e-023
Identities = 274/347 (78%)
Strand = Plus / Plus
Query: 136 ctggaccttccgggtttcgtgccgctgaagctgtcccaggtcgagatcctcgtgtcctac 195
|||||||| ||||| | |||||||||| ||| ||||| |||||||||| | | | |||
Sbjct: 115 ctggacctcccgggctacgtgccgctgcggctcacccagctcgagatcctggcggcatac 174
Query: 196 ctcggcgcctccgtcttcgttttcctcgccgtctggctcgtctccggaagatgtgtcaga 255
|||||| ||||| ||||||| || ||||||||||||| ||||||| ||||| |||
Sbjct: 175 ctcggcacctccctcttcgtcgtcgccgccgtctggctcctctccgggagatgccgcagg 234
Query: 256 ttatccaagaccgaccgtctgctcatgtgctggtgggcatttacagggttgacccacata 315
| ||| | ||||||| |||||||||||||||||||| || || || | |||||||||
Sbjct: 235 ctgtccggggccgaccgcctgctcatgtgctggtgggccttcaccggcctcacccacata 294
Query: 316 atgatcgaggggccctttgtcttcactcctgatttcttcaagaaggagaaccccaatttc 375
| |||||||||||||| |||| || || | ||||||| ||| | |||||| |||
Sbjct: 295 ctcatcgaggggcccttcgtctntacccccgggttcttcaccaagaccagccccaacttc 354
Query: 376 tttgatgaagtttggaaagagtatagtaagggagactctaggtatgttgctagggacact 435
|| || ||||| ||||| ||||| || ||||| ||||| ||||| || || ||||||||
Sbjct: 355 ttcgacgaagtctggaaggagtacagcaagggtgactccaggtacgtcgccagggacacc 414
Query: 436 gcaactgttacggtcgaagggatcaccgctgtattggaaggccctgc 482
|| || || || |||||||| ||||| || || |||||||||||||
Sbjct: 415 gccaccgtcaccgtcgaaggaatcacggccgtgctggaaggccctgc 461
>gb|BQ461122.1|BQ461122 HE01C10r HE Hordeum vulgare subsp. vulgare cDNA clone HE01C10
5-PRIME, mRNA sequence
Length = 490
Score = 111 bits (56), Expect = 4e-023
Identities = 272/344 (79%)
Strand = Plus / Plus
Query: 139 gaccttccgggtttcgtgccgctgaagctgtcccaggtcgagatcctcgtgtcctacctc 198
||||| ||||| | |||||||||| ||| ||||| |||||||||| | | | ||||||
Sbjct: 123 gacctcccgggctacgtgccgctgcggctcacccagctcgagatcctggcggcatacctc 182
Query: 199 ggcgcctccgtcttcgttttcctcgccgtctggctcgtctccggaagatgtgtcagatta 258
||| ||||| || |||| || ||||||||||||| ||||||| ||||| ||| |
Sbjct: 183 ggcacctccctcctcgtcgtcgccgccgtctggctcctctccgggagatgccgcaggctg 242
Query: 259 tccaagaccgaccgtctgctcatgtgctggtgggcatttacagggttgacccacataatg 318
||| | ||||||| |||||||||||||||||||| || || || | ||||||||| |
Sbjct: 243 tccggggccgaccgcctgctcatgtgctggtgggccttcaccggcctcacccacatactc 302
Query: 319 atcgaggggccctttgtcttcactcctgatttcttcaagaaggagaaccccaatttcttt 378
|||||||||||||| ||||| || || | |||||||| ||| | |||||| |||||
Sbjct: 303 atcgaggggcccttcgtctttacccccggtttcttcaccaagaccagccccaacttcttc 362
Query: 379 gatgaagtttggaaagagtatagtaagggagactctaggtatgttgctagggacactgca 438
|| ||||| ||||| ||||| || ||||| ||||| ||||| || || |||||||| ||
Sbjct: 363 gacgaagtctggaaggagtacagcaagggtgactccaggtacgtcgccagggacaccgcc 422
Query: 439 actgttacggtcgaagggatcaccgctgtattggaaggccctgc 482
|| || || |||||||| ||||| || || |||||||||||||
Sbjct: 423 accgtcaccgtcgaaggaatcacggccgtgctggaaggccctgc 466
>gb|BQ468056.1|BQ468056 HR01M23r HR Hordeum vulgare subsp. vulgare cDNA clone HR01M23
5-PRIME, mRNA sequence
Length = 462
Score = 111 bits (56), Expect = 4e-023
Identities = 272/344 (79%)
Strand = Plus / Plus
Query: 139 gaccttccgggtttcgtgccgctgaagctgtcccaggtcgagatcctcgtgtcctacctc 198
||||| ||||| | |||||||||| ||| ||||| |||||||||| | | | ||||||
Sbjct: 81 gacctcccgggctacgtgccgctgcggctcacccagctcgagatcctggcggcatacctc 140
Query: 199 ggcgcctccgtcttcgttttcctcgccgtctggctcgtctccggaagatgtgtcagatta 258
||| ||||| || |||| || ||||||||||||| ||||||| ||||| ||| |
Sbjct: 141 ggcacctccctcctcgtcgtcgccgccgtctggctcctctccgggagatgccgcaggctg 200
Query: 259 tccaagaccgaccgtctgctcatgtgctggtgggcatttacagggttgacccacataatg 318
||| | ||||||| |||||||||||||||||||| || || || | ||||||||| |
Sbjct: 201 tccggggccgaccgcctgctcatgtgctggtgggccttcaccggcctcacccacatactc 260
Query: 319 atcgaggggccctttgtcttcactcctgatttcttcaagaaggagaaccccaatttcttt 378
|||||||||||||| ||||| || || | |||||||| ||| | |||||| |||||
Sbjct: 261 atcgaggggcccttcgtctttacccccggtttcttcaccaagaccagccccaacttcttc 320
Query: 379 gatgaagtttggaaagagtatagtaagggagactctaggtatgttgctagggacactgca 438
|| ||||| ||||| ||||| || ||||| ||||| ||||| || || |||||||| ||
Sbjct: 321 gacgaagtctggaaggagtacagcaagggtgactccaggtacgtcgccagggacaccgcc 380
Query: 439 actgttacggtcgaagggatcaccgctgtattggaaggccctgc 482
|| || || |||||||| ||||| || || |||||||||||||
Sbjct: 381 accgtcaccgtcgaaggaatcacggccgtgctggaaggccctgc 424
>gb|BI780821.2|BI780821 EBma05_SQ001_A11_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ001_A11 5', mRNA sequence
Length = 482
Score = 111 bits (56), Expect = 4e-023
Identities = 272/344 (79%)
Strand = Plus / Plus
Query: 139 gaccttccgggtttcgtgccgctgaagctgtcccaggtcgagatcctcgtgtcctacctc 198
||||| ||||| | |||||||||| ||| ||||| |||||||||| | | | ||||||
Sbjct: 89 gacctcccgggctacgtgccgctgcggctcacccagctcgagatcctggcggcatacctc 148
Query: 199 ggcgcctccgtcttcgttttcctcgccgtctggctcgtctccggaagatgtgtcagatta 258
||| ||||| || |||| || ||||||||||||| ||||||| ||||| ||| |
Sbjct: 149 ggcacctccctcctcgtcgtcgccgccgtctggctcctctccgggagatgccgcaggctg 208
Query: 259 tccaagaccgaccgtctgctcatgtgctggtgggcatttacagggttgacccacataatg 318
||| | ||||||| |||||||||||||||||||| || || || | ||||||||| |
Sbjct: 209 tccggggccgaccgcctgctcatgtgctggtgggccttcaccggcctcacccacatactc 268
Query: 319 atcgaggggccctttgtcttcactcctgatttcttcaagaaggagaaccccaatttcttt 378
|||||||||||||| ||||| || || | |||||||| ||| | |||||| |||||
Sbjct: 269 atcgaggggcccttcgtctttacccccggtttcttcaccaagaccagccccaacttcttc 328
Query: 379 gatgaagtttggaaagagtatagtaagggagactctaggtatgttgctagggacactgca 438
|| ||||| ||||| ||||| || ||||| ||||| ||||| || || |||||||| ||
Sbjct: 329 gacgaagtctggaaggagtacagcaagggtgactccaggtacgtcgccagggacaccgcc 388
Query: 439 actgttacggtcgaagggatcaccgctgtattggaaggccctgc 482
|| || || |||||||| ||||| || || |||||||||||||
Sbjct: 389 accgtcaccgtcgaaggaatcacggccgtgctggaaggccctgc 432
>gb|BQ768106.1|BQ768106 EBro08_SQ010_O18_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ010_O18 5', mRNA sequence
Length = 467
Score = 111 bits (56), Expect = 4e-023
Identities = 272/344 (79%)
Strand = Plus / Plus
Query: 139 gaccttccgggtttcgtgccgctgaagctgtcccaggtcgagatcctcgtgtcctacctc 198
||||| ||||| | |||||||||| ||| ||||| |||||||||| | | | ||||||
Sbjct: 121 gacctcccgggctacgtgccgctgcggctcacccagctcgagatcctggcggcatacctc 180
Query: 199 ggcgcctccgtcttcgttttcctcgccgtctggctcgtctccggaagatgtgtcagatta 258
||| ||||| || |||| || ||||||||||||| ||||||| ||||| ||| |
Sbjct: 181 ggcacctccctcctcgtcgtcgccgccgtctggctcctctccgggagatgccgcaggctg 240
Query: 259 tccaagaccgaccgtctgctcatgtgctggtgggcatttacagggttgacccacataatg 318
||| | ||||||| |||||||||||||||||||| || || || | ||||||||| |
Sbjct: 241 tccggggccgaccgcctgctcatgtgctggtgggccttcaccggcctcacccacatactc 300
Query: 319 atcgaggggccctttgtcttcactcctgatttcttcaagaaggagaaccccaatttcttt 378
|||||||||||||| ||||| || || | |||||||| ||| | |||||| |||||
Sbjct: 301 atcgaggggcccttcgtctttacccccggtttcttcaccaagaccagccccaacttcttc 360
Query: 379 gatgaagtttggaaagagtatagtaagggagactctaggtatgttgctagggacactgca 438
|| ||||| ||||| ||||| || ||||| ||||| ||||| || || |||||||| ||
Sbjct: 361 gacgaagtctggaaggagtacagcaagggtgactccaggtacgtcgccagggacaccgcc 420
Query: 439 actgttacggtcgaagggatcaccgctgtattggaaggccctgc 482
|| || || |||||||| ||||| || || |||||||||||||
Sbjct: 421 accgtcaccgtcgaaggaatcacggccgtgctggaaggccctgc 464
>gb|CA019925.1|CA019925 HV13L19r HV Hordeum vulgare subsp. vulgare cDNA clone HV13L19
5-PRIME, mRNA sequence
Length = 467
Score = 111 bits (56), Expect = 4e-023
Identities = 272/344 (79%)
Strand = Plus / Plus
Query: 139 gaccttccgggtttcgtgccgctgaagctgtcccaggtcgagatcctcgtgtcctacctc 198
||||| ||||| | |||||||||| ||| ||||| |||||||||| | | | ||||||
Sbjct: 95 gacctcccgggctacgtgccgctgcggctcacccagctcgagatcctggcggcatacctc 154
Query: 199 ggcgcctccgtcttcgttttcctcgccgtctggctcgtctccggaagatgtgtcagatta 258
||| ||||| || |||| || ||||||||||||| ||||||| ||||| ||| |
Sbjct: 155 ggcacctccctcctcgtcgtcgccgccgtctggctcctctccgggagatgccgcaggctg 214
Query: 259 tccaagaccgaccgtctgctcatgtgctggtgggcatttacagggttgacccacataatg 318
||| | ||||||| |||||||||||||||||||| || || || | ||||||||| |
Sbjct: 215 tccggggccgaccgcctgctcatgtgctggtgggccttcaccggcctcacccacatactc 274
Query: 319 atcgaggggccctttgtcttcactcctgatttcttcaagaaggagaaccccaatttcttt 378
|||||||||||||| ||||| || || | |||||||| ||| | |||||| |||||
Sbjct: 275 atcgaggggcccttcgtctttacccccggtttcttcaccaagaccagccccaacttcttc 334
Query: 379 gatgaagtttggaaagagtatagtaagggagactctaggtatgttgctagggacactgca 438
|| ||||| ||||| ||||| || ||||| ||||| ||||| || || |||||||| ||
Sbjct: 335 gacgaagtctggaaggagtacagcaagggtgactccaggtacgtcgccagggacaccgcc 394
Query: 439 actgttacggtcgaagggatcaccgctgtattggaaggccctgc 482
|| || || |||||||| ||||| || || |||||||||||||
Sbjct: 395 accgtcaccgtcgaaggaatcacggccgtgctggaaggccctgc 438
>gb|BM444900.1|BM444900 EBem09_SQ006_N12_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ006_N12 5', mRNA sequence
Length = 297
Score = 109 bits (55), Expect = 2e-022
Identities = 76/83 (91%)
Strand = Plus / Plus
Query: 580 tacttcatcaccgcgtacttggacggcttcaacttctgggtcggcccgttctacttctgg 639
||||||| |||||| |||||||||||||||||||||||| || | |||||||||||||||
Sbjct: 10 tacttcaccaccgcctacttggacggcttcaacttctggatcagtccgttctacttctgg 69
Query: 640 gcgtatttcattggcgcaaacag 662
|| |||||||| |||||||||||
Sbjct: 70 gcatatttcatcggcgcaaacag 92
>gb|BQ767248.1|BQ767248 EBro08_SQ008_J12_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ008_J12 5', mRNA sequence
Length = 359
Score = 109 bits (55), Expect = 2e-022
Identities = 76/83 (91%)
Strand = Plus / Plus
Query: 580 tacttcatcaccgcgtacttggacggcttcaacttctgggtcggcccgttctacttctgg 639
||||||| |||||| |||||||||||||||||||||||| || | |||||||||||||||
Sbjct: 13 tacttcaccaccgcctacttggacggcttcaacttctggatcagtccgttctacttctgg 72
Query: 640 gcgtatttcattggcgcaaacag 662
|| |||||||| |||||||||||
Sbjct: 73 gcatatttcatcggcgcaaacag 95
>gb|CA029314.1|CA029314 HZ64N12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ64N12
5-PRIME, mRNA sequence
Length = 405
Score = 95.6 bits (48), Expect = 2e-018
Identities = 234/296 (79%)
Strand = Plus / Plus
Query: 139 gaccttccgggtttcgtgccgctgaagctgtcccaggtcgagatcctcgtgtcctacctc 198
||||| ||||| | |||||||||| ||| ||||| |||||||||| | | | ||||||
Sbjct: 95 gacctcccgggctacgtgccgctgcggctcacccagctcgagatcctggcggcatacctc 154
Query: 199 ggcgcctccgtcttcgttttcctcgccgtctggctcgtctccggaagatgtgtcagatta 258
||| ||||| || |||| || ||||||||||||| ||||||| ||||| ||| |
Sbjct: 155 ggcacctccctcctcgtcgtcgccgccgtctggctcctctccgggagatgccgcaggctg 214
Query: 259 tccaagaccgaccgtctgctcatgtgctggtgggcatttacagggttgacccacataatg 318
||| | ||||||| |||||||||||||||||||| || || || | ||||||||| |
Sbjct: 215 tccggggccgaccgcctgctcatgtgctggtgggccttcaccggcctcacccacatactc 274
Query: 319 atcgaggggccctttgtcttcactcctgatttcttcaagaaggagaaccccaatttcttt 378
|||||||||||||| ||||| || || | |||||||| ||| | |||||| |||||
Sbjct: 275 atcgaggggcccttcgtctttacccccggtttcttcaccaagaccagccccaacttcttc 334
Query: 379 gatgaagtttggaaagagtatagtaagggagactctaggtatgttgctagggacac 434
|| ||||| ||||| ||||| || ||||| ||||| ||||| || || ||||||||
Sbjct: 335 gacgaagtctggaaggagtacagcaagggtgactccaggtacgtcgccagggacac 390
>gb|CA021037.1|CA021037 HZ38O19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ38O19
5-PRIME, mRNA sequence
Length = 447
Score = 89.7 bits (45), Expect = 1e-016
Identities = 222/281 (79%)
Strand = Plus / Plus
Query: 139 gaccttccgggtttcgtgccgctgaagctgtcccaggtcgagatcctcgtgtcctacctc 198
||||| ||||| | |||||||||| ||| ||||| |||||||||| | | | ||||||
Sbjct: 164 gacctcccgggctacgtgccgctgcggctcacccagctcgagatcctggcggcatacctc 223
Query: 199 ggcgcctccgtcttcgttttcctcgccgtctggctcgtctccggaagatgtgtcagatta 258
||| ||||| || |||| || ||||||||||||| ||||||| ||||| ||| |
Sbjct: 224 ggcacctccctcctcgtcgtcgccgccgtctggctcctctccgggagatgccgcaggctg 283
Query: 259 tccaagaccgaccgtctgctcatgtgctggtgggcatttacagggttgacccacataatg 318
||| | ||||||| |||||||||||||||||||| || || || | ||||||||| |
Sbjct: 284 tccggggccgaccgcctgctcatgtgctggtgggccttcaccggcctcacccacatactc 343
Query: 319 atcgaggggccctttgtcttcactcctgatttcttcaagaaggagaaccccaatttcttt 378
|||||||||||||| ||||| || || | |||||||| ||| | |||||| |||||
Sbjct: 344 atcgaggggcccttcgtctttacccccggtttcttcaccaagaccagccccaacttcttc 403
Query: 379 gatgaagtttggaaagagtatagtaagggagactctaggta 419
|| ||||| ||||| ||||| || ||||| ||||| |||||
Sbjct: 404 gacgaagtctggaaggagtacagcaagggtgactccaggta 444
>gb|BG368408.1|BG368408 HVSMEi0018I02f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0018I02f, mRNA sequence
Length = 552
Score = 83.8 bits (42), Expect = 9e-015
Identities = 228/290 (78%)
Strand = Plus / Plus
Query: 193 tacctcggcgcctccgtcttcgttttcctcgccgtctggctcgtctccggaagatgtgtc 252
||||||||| ||||| ||||||| || ||||||||||||| | ||||| ||||| |
Sbjct: 173 tacctcggcacctccctcttcgtcgtcgccgccgtctggctcctttccgggagatgccgc 232
Query: 253 agattatccaagaccgaccgtctgctcatgtgctggtgggcatttacagggttgacccac 312
|| | ||| | ||||||| |||||||||||||||||||| || || || | ||||||
Sbjct: 233 aggctgtccggggccgaccgcctgctcatgtgctggtgggccttcaccggcctaacccac 292
Query: 313 ataatgatcgaggggccctttgtcttcactcctgatttcttcaagaaggagaaccccaat 372
||| | |||||||||||||| ||||| || || | |||||||| ||| | ||||||
Sbjct: 293 atactcatcgaggggcccttcgtctttacccccggtttcttcaccaagaccagccccaac 352
Query: 373 ttctttgatgaagtttggaaagagtatagtaagggagactctaggtatgttgctagggac 432
||||| || |||| ||||| ||||| || ||||| ||||| |||| || || ||||||
Sbjct: 353 ttcttcgaccaagtctggaaggagtacagcaagggtgactccaggtccgtcgccagggac 412
Query: 433 actgcaactgttacggtcgaagggatcaccgctgtattggaaggccctgc 482
|| || || || || |||||||| ||||| || || |||||||||||||
Sbjct: 413 accgccaccgtcaccgtcgaaggaatcacggccgtgctggaaggccctgc 462
>gb|CA027775.1|CA027775 HZ59P23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ59P23
5-PRIME, mRNA sequence
Length = 510
Score = 75.8 bits (38), Expect = 2e-012
Identities = 222/282 (78%), Gaps = 1/282 (0%)
Strand = Plus / Plus
Query: 139 gaccttccgggtttcgtgccgctgaagctgtcccaggtcgagatcctcgtgtcctacctc 198
||||| ||||| | |||||||||| ||| ||||| |||||||||| | | | ||||||
Sbjct: 226 gacctcccgggctacgtgccgctgcggctcacccagctcgagatcctggcggcatacctc 285
Query: 199 ggcgcctccgtcttcgttttcctcgccgtctggctcgtctccggaagatgtgtcagatta 258
||| ||||| || |||| || ||||||||||||| ||||||| ||||| ||| |
Sbjct: 286 ggcacctccctcctcgtcgtcgccgccgtctggctcctctccgggagatgccgcaggctg 345
Query: 259 tccaagaccgaccgtctgctcatgtg-ctggtgggcatttacagggttgacccacataat 317
||| | ||||||| ||||||||||| ||||||||| || || || | ||||||||| |
Sbjct: 346 tccggggccgaccgcctgctcatgtgnctggtgggccttcaccggcctcacccacatact 405
Query: 318 gatcgaggggccctttgtcttcactcctgatttcttcaagaaggagaaccccaatttctt 377
|||||||||||||| ||||| || || | |||||||| ||| | |||||| |||||
Sbjct: 406 catcgaggggcccttcgtctttacccccggtttcttcaccaagaccagccccaacttctt 465
Query: 378 tgatgaagtttggaaagagtatagtaagggagactctaggta 419
|| ||||| ||||| ||||| || ||||| ||||| |||||
Sbjct: 466 cgacgaagtctggaaggagtacagcaagggtgactccaggta 507
>gb|AL502459.1|AL502459 AL502459 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07K12u 3', mRNA sequence
Length = 312
Score = 52.0 bits (26), Expect = 3e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 629 tctacttctgggcgtatttcattggcgcaaacag 662
||||||||||||| |||||||| |||||||||||
Sbjct: 312 tctacttctgggcatatttcatcggcgcaaacag 279
>gb|BQ760373.1|BQ760373 EBro01_SQ002_E24_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ002_E24 5', mRNA sequence
Length = 278
Score = 52.0 bits (26), Expect = 3e-005
Identities = 89/110 (80%)
Strand = Plus / Plus
Query: 139 gaccttccgggtttcgtgccgctgaagctgtcccaggtcgagatcctcgtgtcctacctc 198
||||| ||||| | |||||||||| ||| ||||| |||||||||| | | | ||||||
Sbjct: 130 gacctcccgggctacgtgccgctgcggctcacccagctcgagatcctggcggcatacctc 189
Query: 199 ggcgcctccgtcttcgttttcctcgccgtctggctcgtctccggaagatg 248
||| ||||| || |||| || ||||||||||||| ||||||| |||||
Sbjct: 190 ggcacctccctcctcgtcgtcgccgccgtctggctcctctccgggagatg 239
>gb|BF253829.2|BF253829 HVSMEf0002D20f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002D20f, mRNA sequence
Length = 868
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 612 cttctgggtcggcccgttct 631
||||||||||||||||||||
Sbjct: 810 cttctgggtcggcccgttct 829
>gb|BE421292.1|BE421292 HWM007.G09 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM007.G09, mRNA sequence
Length = 715
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 612 cttctgggtcggcccgttc 630
|||||||||||||||||||
Sbjct: 194 cttctgggtcggcccgttc 212
>gb|AL450814.1|AL450814 AL450814 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK04F19u 5', mRNA sequence
Length = 699
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 612 cttctgggtcggcccgttc 630
|||||||||||||||||||
Sbjct: 475 cttctgggtcggcccgttc 493
>gb|AL499983.1|AL499983 AL499983 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK04F21r 3', mRNA sequence
Length = 427
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 612 cttctgggtcggcccgttc 630
|||||||||||||||||||
Sbjct: 391 cttctgggtcggcccgttc 373
>gb|AL500260.1|AL500260 AL500260 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK05M02r 3', mRNA sequence
Length = 566
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 612 cttctgggtcggcccgttc 630
|||||||||||||||||||
Sbjct: 492 cttctgggtcggcccgttc 474
>gb|BG299626.1|BG299626 HVSMEa0021C16f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0021C16f, mRNA sequence
Length = 867
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 612 cttctgggtcggcccgttc 630
|||||||||||||||||||
Sbjct: 472 cttctgggtcggcccgttc 490
>gb|BI956726.1|BI956726 HVSMEn0005A03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005A03f, mRNA sequence
Length = 799
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 612 cttctgggtcggcccgttc 630
|||||||||||||||||||
Sbjct: 537 cttctgggtcggcccgttc 555
>gb|BI957673.1|BI957673 HVSMEn0010J17f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010J17f, mRNA sequence
Length = 621
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 612 cttctgggtcggcccgttc 630
|||||||||||||||||||
Sbjct: 163 cttctgggtcggcccgttc 181
>gb|BG415738.1|BG415738 HVSMEk0007K11f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0007K11f, mRNA sequence
Length = 638
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 612 cttctgggtcggcccgttc 630
|||||||||||||||||||
Sbjct: 308 cttctgggtcggcccgttc 326
>gb|AJ463413.1|AJ463413 AJ463413 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200048D09F1, mRNA sequence
Length = 420
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 612 cttctgggtcggcccgttc 630
|||||||||||||||||||
Sbjct: 123 cttctgggtcggcccgttc 141
>gb|BJ462810.1|BJ462810 BJ462810 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags24i05 5', mRNA sequence
Length = 475
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 612 cttctgggtcggcccgttc 630
|||||||||||||||||||
Sbjct: 5 cttctgggtcggcccgttc 23
>gb|BQ660323.1|BQ660323 HI01O22w HI Hordeum vulgare subsp. vulgare cDNA clone HI01O22
3-PRIME, mRNA sequence
Length = 626
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 612 cttctgggtcggcccgttc 630
|||||||||||||||||||
Sbjct: 453 cttctgggtcggcccgttc 435
>gb|BI780856.2|BI780856 EBma05_SQ001_D14_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ001_D14 5', mRNA sequence
Length = 509
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 612 cttctgggtcggcccgttc 630
|||||||||||||||||||
Sbjct: 488 cttctgggtcggcccgttc 506
>gb|BQ765859.1|BQ765859 EBro03_SQ008_J08_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ008_J08 5', mRNA sequence
Length = 359
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 612 cttctgggtcggcccgttc 630
|||||||||||||||||||
Sbjct: 85 cttctgggtcggcccgttc 103
>gb|BQ766516.1|BQ766516 EBro08_SQ006_F10_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_F10 5', mRNA sequence
Length = 682
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 612 cttctgggtcggcccgttc 630
|||||||||||||||||||
Sbjct: 332 cttctgggtcggcccgttc 350
>gb|BU967534.1|BU967534 HB04J18r BC Hordeum vulgare subsp. vulgare cDNA clone HB04J18
5-PRIME, mRNA sequence
Length = 268
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 612 cttctgggtcggcccgttc 630
|||||||||||||||||||
Sbjct: 70 cttctgggtcggcccgttc 88
>gb|BU974732.1|BU974732 HB28O13r BC Hordeum vulgare subsp. vulgare cDNA clone HB28O13
5-PRIME, mRNA sequence
Length = 543
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 612 cttctgggtcggcccgttc 630
|||||||||||||||||||
Sbjct: 272 cttctgggtcggcccgttc 290
>gb|BU975499.1|BU975499 HB31E12r BC Hordeum vulgare subsp. vulgare cDNA clone HB31E12
5-PRIME, mRNA sequence
Length = 544
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 612 cttctgggtcggcccgttc 630
|||||||||||||||||||
Sbjct: 273 cttctgggtcggcccgttc 291
>gb|BU979505.1|BU979505 HA16G04r HA Hordeum vulgare subsp. vulgare cDNA clone HA16G04
5-PRIME, mRNA sequence
Length = 577
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 612 cttctgggtcggcccgttc 630
|||||||||||||||||||
Sbjct: 514 cttctgggtcggcccgttc 532
>gb|BU993935.1|BU993935 HM05A13r HM Hordeum vulgare subsp. vulgare cDNA clone HM05A13
5-PRIME, mRNA sequence
Length = 502
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 612 cttctgggtcggcccgttc 630
|||||||||||||||||||
Sbjct: 55 cttctgggtcggcccgttc 73
>gb|CA023782.1|CA023782 HZ47G07r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ47G07
5-PRIME, mRNA sequence
Length = 571
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 612 cttctgggtcggcccgttc 630
|||||||||||||||||||
Sbjct: 332 cttctgggtcggcccgttc 350
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 91,402
Number of Sequences: 312970
Number of extensions: 91402
Number of successful extensions: 27067
Number of sequences better than 0.5: 49
Number of HSP's better than 0.5 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26969
Number of HSP's gapped (non-prelim): 79
length of query: 900
length of database: 175,134,539
effective HSP length: 19
effective length of query: 881
effective length of database: 169,188,109
effective search space: 149054724029
effective search space used: 149054724029
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)