BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= L20621.2.1
(1220 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ762559.1|BQ762559 EBro02_SQ004_D11_R root, 3 week, hyd... 174 4e-042
gb|BM371239.2|BM371239 EBro04_SQ003_P02_R root, 3 week, sal... 96 3e-018
gb|BU998194.1|BU998194 HI10E13r HI Hordeum vulgare subsp. v... 96 3e-018
gb|CB859379.1|CB859379 HI10E13w HI Hordeum vulgare subsp. v... 92 5e-017
gb|AL502445.1|AL502445 AL502445 Hordeum vulgare Barke roots... 42 0.042
gb|AL505145.1|AL505145 AL505145 Hordeum vulgare Barke roots... 42 0.042
gb|BI958236.1|BI958236 HVSMEn0014A06f Hordeum vulgare rachi... 42 0.042
gb|BI959919.1|BI959919 HVSMEn0022F23f Hordeum vulgare rachi... 42 0.042
gb|BF254933.3|BF254933 HVSMEf0005H09f Hordeum vulgare seedl... 42 0.042
gb|BF257375.3|BF257375 HVSMEf0012L13f Hordeum vulgare seedl... 42 0.042
gb|BG365519.2|BG365519 HVSMEi0003A05f Hordeum vulgare 20 DA... 42 0.042
gb|BQ459824.1|BQ459824 HA07P19r HA Hordeum vulgare subsp. v... 42 0.042
gb|BQ467721.1|BQ467721 HS04K18r HS Hordeum vulgare subsp. v... 42 0.042
gb|BQ763187.1|BQ763187 EBro02_SQ007_B16_R root, 3 week, hyd... 42 0.042
gb|BU982053.1|BU982053 HA25G06r HA Hordeum vulgare subsp. v... 42 0.042
gb|BU995187.1|BU995187 HM09H18r HM Hordeum vulgare subsp. v... 42 0.042
gb|BU996177.1|BU996177 HM12L12r HM Hordeum vulgare subsp. v... 42 0.042
gb|CA002770.1|CA002770 HS08H16r HS Hordeum vulgare subsp. v... 42 0.042
gb|CA015758.1|CA015758 HV12C24u HV Hordeum vulgare subsp. v... 42 0.042
gb|CA024360.1|CA024360 HZ49B12r HZ Hordeum vulgare subsp. v... 42 0.042
gb|CA029957.1|CA029957 HX05L03r HX Hordeum vulgare subsp. v... 42 0.042
gb|CA030743.1|CA030743 HX07P23r HX Hordeum vulgare subsp. v... 42 0.042
gb|CB881331.1|CB881331 HM09H18w HM Hordeum vulgare subsp. v... 42 0.042
gb|CB882672.1|CB882672 HL02I13w HL Hordeum vulgare subsp. v... 42 0.042
gb|CV054150.1|CV054150 BNEL107c7 Barley EST endosperm libra... 42 0.042
gb|CV057346.1|CV057346 BNEL26g5 Barley EST endosperm librar... 42 0.042
gb|CV063160.1|CV063160 BNEL87c4 Barley EST endosperm librar... 42 0.042
gb|AL503368.1|AL503368 AL503368 Hordeum vulgare Barke roots... 40 0.17
gb|AL503581.1|AL503581 AL503581 Hordeum vulgare Barke roots... 40 0.17
gb|BF258214.1|BF258214 HVSMEf0015B24f Hordeum vulgare seedl... 40 0.17
gb|BE195736.2|BE195736 HVSMEh0090F03f Hordeum vulgare 5-45 ... 40 0.17
gb|BG415221.1|BG415221 HVSMEk0005J24f Hordeum vulgare testa... 40 0.17
gb|BG415501.1|BG415501 HVSMEk0006L21f Hordeum vulgare testa... 40 0.17
gb|BI958091.1|BI958091 HVSMEn0013F04f Hordeum vulgare rachi... 40 0.17
gb|BI958683.1|BI958683 HVSMEn0016D10f Hordeum vulgare rachi... 40 0.17
gb|BG367514.2|BG367514 HVSMEi0012I13f Hordeum vulgare 20 DA... 40 0.17
gb|AV917239.1|AV917239 AV917239 K. Sato unpublished cDNA li... 40 0.17
gb|BJ452537.1|BJ452537 BJ452537 K. Sato unpublished cDNA li... 40 0.17
gb|BJ455172.1|BJ455172 BJ455172 K. Sato unpublished cDNA li... 40 0.17
gb|BJ460082.1|BJ460082 BJ460082 K. Sato unpublished cDNA li... 40 0.17
gb|BJ469958.1|BJ469958 BJ469958 K. Sato unpublished cDNA li... 40 0.17
gb|BJ471030.1|BJ471030 BJ471030 K. Sato unpublished cDNA li... 40 0.17
gb|BJ473166.1|BJ473166 BJ473166 K. Sato unpublished cDNA li... 40 0.17
gb|BQ464729.1|BQ464729 HU01C14T HU Hordeum vulgare subsp. v... 40 0.17
gb|BQ470796.1|BQ470796 HX04A22r HX Hordeum vulgare subsp. v... 40 0.17
gb|BQ471635.1|BQ471635 HV03A06r HV Hordeum vulgare subsp. v... 40 0.17
gb|BQ472565.1|BQ472565 HB09C18T BC Hordeum vulgare subsp. v... 40 0.17
gb|BQ660337.1|BQ660337 HI01P22w HI Hordeum vulgare subsp. v... 40 0.17
gb|BQ739976.1|BQ739976 HB107F03 HB Hordeum vulgare subsp. v... 40 0.17
gb|BQ740113.1|BQ740113 HC107H04 HC Hordeum vulgare subsp. v... 40 0.17
gb|BM098434.2|BM098434 EBem08_SQ003_A19_R embryo, 40 DPA, n... 40 0.17
gb|BI777054.2|BI777054 EBpi03_SQ001_M06_R pistil, 4 DPA, no... 40 0.17
gb|BU968323.1|BU968323 HB07C18r BC Hordeum vulgare subsp. v... 40 0.17
gb|BU970314.1|BU970314 HB14E09r BC Hordeum vulgare subsp. v... 40 0.17
gb|BU975435.1|BU975435 HB31B24r BC Hordeum vulgare subsp. v... 40 0.17
gb|BU975919.1|BU975919 HB32L08r BC Hordeum vulgare subsp. v... 40 0.17
gb|BU987931.1|BU987931 HF16C21r HF Hordeum vulgare subsp. v... 40 0.17
gb|BU999145.1|BU999145 HI13G15r HI Hordeum vulgare subsp. v... 40 0.17
gb|CA002878.1|CA002878 HS08M15r HS Hordeum vulgare subsp. v... 40 0.17
gb|CA007767.1|CA007767 HU08P08r HU Hordeum vulgare subsp. v... 40 0.17
gb|CA008363.1|CA008363 HU10L15r HU Hordeum vulgare subsp. v... 40 0.17
gb|CA021961.1|CA021961 HZ41L03r HZ Hordeum vulgare subsp. v... 40 0.17
gb|CA032078.1|CA032078 HX11P04r HX Hordeum vulgare subsp. v... 40 0.17
gb|CB859861.1|CB859861 HI11N10w HI Hordeum vulgare subsp. v... 40 0.17
gb|AU252369.1|AU252369 AU252369 salt-stressed barley root c... 40 0.17
gb|CK123600.1|CK123600 BES1824104k23 BES1824 Hordeum vulgar... 40 0.17
gb|CK124364.1|CK124364 BES1824108i05 BES1824 Hordeum vulgar... 40 0.17
gb|CK124791.1|CK124791 BES1824110g14 BES1824 Hordeum vulgar... 40 0.17
gb|CK125487.1|CK125487 BES1824108l24 BES1824 Hordeum vulgar... 40 0.17
emb|AJ249146.1|HVU249146 Hordeum vulgare mRNA for MADS-box ... 40 0.17
>gb|BQ762559.1|BQ762559 EBro02_SQ004_D11_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ004_D11 5', mRNA sequence
Length = 399
Score = 174 bits (88), Expect = 4e-042
Identities = 169/196 (86%)
Strand = Plus / Plus
Query: 222 cccacaccgatgcccaagaggctggacgggaaggtggccattgtgacgggcggcgcgcgc 281
||||| || |||| ||||||||| ||||| |||||||||||||| || |||||||||||
Sbjct: 204 cccacccccatgcacaagaggctcgacggcaaggtggccattgtcaccggcggcgcgcgg 263
Query: 282 gggatcggcgaggccatcgtgcggctgttcgccaagcacggggcccgggtggtgatcgcg 341
|||||||| ||||||||||| |||| |||| ||||||||| ||| |||| | ||||||
Sbjct: 264 gggatcggggaggccatcgtcaggctcttcgtcaagcacggcgccaaggtgctcatcgcg 323
Query: 342 gacatcgacgacgccgcgggggaggcgctggcgtcggcgctgggcccgcaggtcagcttc 401
|||||||||||||||||||| || ||||||||| | ||||||||||||| ||| ||| |
Sbjct: 324 gacatcgacgacgccgcgggcgacgcgctggcggcctcgctgggcccgcacgtcggctcc 383
Query: 402 gtgcgctgcgacgtgt 417
| ||||||||||||||
Sbjct: 384 gagcgctgcgacgtgt 399
>gb|BM371239.2|BM371239 EBro04_SQ003_P02_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_P02 5', mRNA sequence
Length = 443
Score = 95.6 bits (48), Expect = 3e-018
Identities = 123/148 (83%)
Strand = Plus / Plus
Query: 239 gaggctggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggccat 298
||||||||| |||||||||||||| || || ||||| ||||||||| |||| ||||| ||
Sbjct: 268 gaggctggaggggaaggtggccatcgtcaccggcggggcgcgcgggctcggggaggcgat 327
Query: 299 cgtgcggctgttcgccaagcacggggcccgggtggtgatcgcggacatcgacgacgccgc 358
|||||| ||||| | || || || || ||||||||||| |||||||||||||| ||
Sbjct: 328 cgtgcgcgcgttcgtccgtcaaggcgcgcgcgtggtgatcgccgacatcgacgacgcggc 387
Query: 359 gggggaggcgctggcgtcggcgctgggc 386
|||||||||||||| | |||||||||
Sbjct: 388 cggggaggcgctggctgccgcgctgggc 415
>gb|BU998194.1|BU998194 HI10E13r HI Hordeum vulgare subsp. vulgare cDNA clone HI10E13
5-PRIME, mRNA sequence
Length = 371
Score = 95.6 bits (48), Expect = 3e-018
Identities = 114/136 (83%)
Strand = Plus / Plus
Query: 239 gaggctggacgggaaggtggccattgtgacgggcggcgcgcgcgggatcggcgaggccat 298
||||||||| |||||||||||||| || || ||||| |||||||||||||| ||||| ||
Sbjct: 166 gaggctggaggggaaggtggccatcgtcaccggcggggcgcgcgggatcggggaggcgat 225
Query: 299 cgtgcggctgttcgccaagcacggggcccgggtggtgatcgcggacatcgacgacgccgc 358
|||||| ||||| | || || || || || |||||||| |||||||||||||| ||
Sbjct: 226 cgtgcgcgcgttcgtccgtcaaggcgcgcgcgtcgtgatcgccgacatcgacgacgcggc 285
Query: 359 gggggaggcgctggcg 374
|||||||||||||||
Sbjct: 286 cggggaggcgctggcg 301
>gb|CB859379.1|CB859379 HI10E13w HI Hordeum vulgare subsp. vulgare cDNA clone HI10E13
3-PRIME, mRNA sequence
Length = 488
Score = 91.7 bits (46), Expect = 5e-017
Identities = 76/86 (88%)
Strand = Plus / Minus
Query: 1005 ttcctggccagcgacgaggccaggtatatatcgggccacaaccttgtcgtggacggcggc 1064
|||||||||||||||||| | ||||| || || ||||||||||| ||||| |||||||||
Sbjct: 483 ttcctggccagcgacgagtcgaggtacatctccggccacaacctcgtcgtcgacggcggc 424
Query: 1065 gtcaccacatccaggaacctcatcgg 1090
|||||||| || |||||| |||||||
Sbjct: 423 gtcaccacgtctaggaacgtcatcgg 398
>gb|AL502445.1|AL502445 AL502445 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07J20u 3', mRNA sequence
Length = 536
Score = 42.1 bits (21), Expect = 0.042
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 845 cgacgacgccaccgccgacgccgac 869
|||||||||||||||||||| ||||
Sbjct: 454 cgacgacgccaccgccgacgacgac 430
>gb|AL505145.1|AL505145 AL505145 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07I16V 5', mRNA sequence
Length = 634
Score = 42.1 bits (21), Expect = 0.042
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 869 ccgagacctcgacctcgacctcgac 893
|||| ||||||||||||||||||||
Sbjct: 18 ccgacacctcgacctcgacctcgac 42
>gb|BI958236.1|BI958236 HVSMEn0014A06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014A06f, mRNA sequence
Length = 688
Score = 42.1 bits (21), Expect = 0.042
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 845 cgacgacgccaccgccgacgccgac 869
|||||||||||||||||||| ||||
Sbjct: 129 cgacgacgccaccgccgacgacgac 153
>gb|BI959919.1|BI959919 HVSMEn0022F23f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0022F23f, mRNA sequence
Length = 654
Score = 42.1 bits (21), Expect = 0.042
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 357 gcgggggaggcgctggcgtcggcgctggg 385
|||||||||||| ||||| ||||||||||
Sbjct: 460 gcgggggaggcgatggcggcggcgctggg 488
>gb|BF254933.3|BF254933 HVSMEf0005H09f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0005H09f, mRNA sequence
Length = 470
Score = 42.1 bits (21), Expect = 0.042
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 845 cgacgacgccaccgccgacgccgac 869
|||||||||||||||||||| ||||
Sbjct: 92 cgacgacgccaccgccgacgacgac 116
>gb|BF257375.3|BF257375 HVSMEf0012L13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0012L13f, mRNA sequence
Length = 820
Score = 42.1 bits (21), Expect = 0.042
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 845 cgacgacgccaccgccgacgccgac 869
|||||||||||||||||||| ||||
Sbjct: 172 cgacgacgccaccgccgacgacgac 196
>gb|BG365519.2|BG365519 HVSMEi0003A05f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0003A05f, mRNA sequence
Length = 782
Score = 42.1 bits (21), Expect = 0.042
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 acagcagcagcaacaacaaca 79
|||||||||||||||||||||
Sbjct: 185 acagcagcagcaacaacaaca 205
>gb|BQ459824.1|BQ459824 HA07P19r HA Hordeum vulgare subsp. vulgare cDNA clone HA07P19
5-PRIME, mRNA sequence
Length = 582
Score = 42.1 bits (21), Expect = 0.042
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 869 ccgagacctcgacctcgacctcgac 893
|||| ||||||||||||||||||||
Sbjct: 45 ccgacacctcgacctcgacctcgac 69
>gb|BQ467721.1|BQ467721 HS04K18r HS Hordeum vulgare subsp. vulgare cDNA clone HS04K18
5-PRIME, mRNA sequence
Length = 515
Score = 42.1 bits (21), Expect = 0.042
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 869 ccgagacctcgacctcgacctcgac 893
|||| ||||||||||||||||||||
Sbjct: 40 ccgacacctcgacctcgacctcgac 64
>gb|BQ763187.1|BQ763187 EBro02_SQ007_B16_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ007_B16 5', mRNA sequence
Length = 575
Score = 42.1 bits (21), Expect = 0.042
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 845 cgacgacgccaccgccgacgccgac 869
|||||||||||||||||||| ||||
Sbjct: 162 cgacgacgccaccgccgacgacgac 186
>gb|BU982053.1|BU982053 HA25G06r HA Hordeum vulgare subsp. vulgare cDNA clone HA25G06
5-PRIME, mRNA sequence
Length = 571
Score = 42.1 bits (21), Expect = 0.042
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 845 cgacgacgccaccgccgacgccgac 869
|||||||||||||||||||| ||||
Sbjct: 279 cgacgacgccaccgccgacgacgac 303
>gb|BU995187.1|BU995187 HM09H18r HM Hordeum vulgare subsp. vulgare cDNA clone HM09H18
5-PRIME, mRNA sequence
Length = 646
Score = 42.1 bits (21), Expect = 0.042
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 845 cgacgacgccaccgccgacgccgac 869
|||||||||||||||||||| ||||
Sbjct: 237 cgacgacgccaccgccgacgacgac 261
>gb|BU996177.1|BU996177 HM12L12r HM Hordeum vulgare subsp. vulgare cDNA clone HM12L12
5-PRIME, mRNA sequence
Length = 577
Score = 42.1 bits (21), Expect = 0.042
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 845 cgacgacgccaccgccgacgccgac 869
|||||||||||||||||||| ||||
Sbjct: 176 cgacgacgccaccgccgacgacgac 200
>gb|CA002770.1|CA002770 HS08H16r HS Hordeum vulgare subsp. vulgare cDNA clone HS08H16
5-PRIME, mRNA sequence
Length = 383
Score = 42.1 bits (21), Expect = 0.042
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 869 ccgagacctcgacctcgacctcgac 893
|||| ||||||||||||||||||||
Sbjct: 40 ccgacacctcgacctcgacctcgac 64
>gb|CA015758.1|CA015758 HV12C24u HV Hordeum vulgare subsp. vulgare cDNA clone HV12C24
3-PRIME, mRNA sequence
Length = 554
Score = 42.1 bits (21), Expect = 0.042
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 845 cgacgacgccaccgccgacgccgac 869
|||||||||||||||||||| ||||
Sbjct: 398 cgacgacgccaccgccgacgacgac 374
>gb|CA024360.1|CA024360 HZ49B12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ49B12
5-PRIME, mRNA sequence
Length = 571
Score = 42.1 bits (21), Expect = 0.042
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 845 cgacgacgccaccgccgacgccgac 869
|||||||||||||||||||| ||||
Sbjct: 449 cgacgacgccaccgccgacgacgac 473
>gb|CA029957.1|CA029957 HX05L03r HX Hordeum vulgare subsp. vulgare cDNA clone HX05L03
5-PRIME, mRNA sequence
Length = 667
Score = 42.1 bits (21), Expect = 0.042
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 869 ccgagacctcgacctcgacctcgac 893
|||| ||||||||||||||||||||
Sbjct: 40 ccgacacctcgacctcgacctcgac 64
>gb|CA030743.1|CA030743 HX07P23r HX Hordeum vulgare subsp. vulgare cDNA clone HX07P23
5-PRIME, mRNA sequence
Length = 615
Score = 42.1 bits (21), Expect = 0.042
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 869 ccgagacctcgacctcgacctcgac 893
|||| ||||||||||||||||||||
Sbjct: 13 ccgacacctcgacctcgacctcgac 37
>gb|CB881331.1|CB881331 HM09H18w HM Hordeum vulgare subsp. vulgare cDNA clone HM09H18
3-PRIME, mRNA sequence
Length = 553
Score = 42.1 bits (21), Expect = 0.042
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 845 cgacgacgccaccgccgacgccgac 869
|||||||||||||||||||| ||||
Sbjct: 414 cgacgacgccaccgccgacgacgac 390
>gb|CB882672.1|CB882672 HL02I13w HL Hordeum vulgare subsp. vulgare cDNA clone HL02I13
3-PRIME, mRNA sequence
Length = 670
Score = 42.1 bits (21), Expect = 0.042
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 869 ccgagacctcgacctcgacctcgac 893
|||| ||||||||||||||||||||
Sbjct: 33 ccgacacctcgacctcgacctcgac 57
>gb|CV054150.1|CV054150 BNEL107c7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL107c7 5' similar to Oryza sativa,
mRNA sequence
Length = 478
Score = 42.1 bits (21), Expect = 0.042
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 845 cgacgacgccaccgccgacgccgac 869
|||||||||||||||||||| ||||
Sbjct: 122 cgacgacgccaccgccgacgacgac 146
>gb|CV057346.1|CV057346 BNEL26g5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL26g5 5' similar to Oryza sativa,
mRNA sequence
Length = 478
Score = 42.1 bits (21), Expect = 0.042
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 845 cgacgacgccaccgccgacgccgac 869
|||||||||||||||||||| ||||
Sbjct: 122 cgacgacgccaccgccgacgacgac 146
>gb|CV063160.1|CV063160 BNEL87c4 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL87c4 5' similar to Oryza sativa,
mRNA sequence
Length = 478
Score = 42.1 bits (21), Expect = 0.042
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 845 cgacgacgccaccgccgacgccgac 869
|||||||||||||||||||| ||||
Sbjct: 122 cgacgacgccaccgccgacgacgac 146
>gb|AL503368.1|AL503368 AL503368 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01N18T 5', mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 57 acacagcagcagcaacaaca 76
||||||||||||||||||||
Sbjct: 372 acacagcagcagcaacaaca 353
>gb|AL503581.1|AL503581 AL503581 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02K24T 5', mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 57 acacagcagcagcaacaaca 76
||||||||||||||||||||
Sbjct: 372 acacagcagcagcaacaaca 353
>gb|BF258214.1|BF258214 HVSMEf0015B24f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0015B24f, mRNA sequence
Length = 768
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 341 cagcagcagcaacaacaaca 360
>gb|BE195736.2|BE195736 HVSMEh0090F03f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0090F03f, mRNA sequence
Length = 634
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 813 cccatgctcatcaacgcctg 832
||||||||||||||||||||
Sbjct: 463 cccatgctcatcaacgcctg 482
>gb|BG415221.1|BG415221 HVSMEk0005J24f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0005J24f, mRNA sequence
Length = 628
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 57 acacagcagcagcaacaaca 76
||||||||||||||||||||
Sbjct: 100 acacagcagcagcaacaaca 81
>gb|BG415501.1|BG415501 HVSMEk0006L21f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0006L21f, mRNA sequence
Length = 667
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 57 acacagcagcagcaacaaca 76
||||||||||||||||||||
Sbjct: 477 acacagcagcagcaacaaca 458
>gb|BI958091.1|BI958091 HVSMEn0013F04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0013F04f, mRNA sequence
Length = 839
Score = 40.1 bits (20), Expect = 0.17
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 239 gaggctggacgggaaggtggccat 262
|||||||| |||||||||||||||
Sbjct: 100 gaggctggccgggaaggtggccat 123
>gb|BI958683.1|BI958683 HVSMEn0016D10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016D10f, mRNA sequence
Length = 641
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 290 cagcagcagcaacaacaaca 309
>gb|BG367514.2|BG367514 HVSMEi0012I13f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0012I13f, mRNA sequence
Length = 709
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 643 cagcagcagcaacaacaaca 662
>gb|AV917239.1|AV917239 AV917239 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18b10 5', mRNA sequence
Length = 640
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 57 acacagcagcagcaacaaca 76
||||||||||||||||||||
Sbjct: 135 acacagcagcagcaacaaca 116
>gb|BJ452537.1|BJ452537 BJ452537 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak39g03 5', mRNA sequence
Length = 553
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 457 cagcagcagcaacaacaaca 476
>gb|BJ455172.1|BJ455172 BJ455172 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak35i04 3', mRNA sequence
Length = 697
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 223 cagcagcagcaacaacaaca 204
>gb|BJ460082.1|BJ460082 BJ460082 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak39g03 3', mRNA sequence
Length = 538
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 221 cagcagcagcaacaacaaca 202
>gb|BJ469958.1|BJ469958 BJ469958 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal14i10 5', mRNA sequence
Length = 537
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 57 acacagcagcagcaacaaca 76
||||||||||||||||||||
Sbjct: 133 acacagcagcagcaacaaca 114
>gb|BJ471030.1|BJ471030 BJ471030 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal30g03 5', mRNA sequence
Length = 616
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 57 acacagcagcagcaacaaca 76
||||||||||||||||||||
Sbjct: 150 acacagcagcagcaacaaca 131
>gb|BJ473166.1|BJ473166 BJ473166 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal38n06 5', mRNA sequence
Length = 624
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 57 acacagcagcagcaacaaca 76
||||||||||||||||||||
Sbjct: 115 acacagcagcagcaacaaca 96
>gb|BQ464729.1|BQ464729 HU01C14T HU Hordeum vulgare subsp. vulgare cDNA clone HU01C14
5-PRIME, mRNA sequence
Length = 551
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 874 acctcgacctcgacctcgac 893
||||||||||||||||||||
Sbjct: 2 acctcgacctcgacctcgac 21
>gb|BQ470796.1|BQ470796 HX04A22r HX Hordeum vulgare subsp. vulgare cDNA clone HX04A22
5-PRIME, mRNA sequence
Length = 645
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 594 cagcagcagcaacaacaaca 613
>gb|BQ471635.1|BQ471635 HV03A06r HV Hordeum vulgare subsp. vulgare cDNA clone HV03A06
5-PRIME, mRNA sequence
Length = 645
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 57 acacagcagcagcaacaaca 76
||||||||||||||||||||
Sbjct: 39 acacagcagcagcaacaaca 20
>gb|BQ472565.1|BQ472565 HB09C18T BC Hordeum vulgare subsp. vulgare cDNA clone HB09C18
5-PRIME, mRNA sequence
Length = 650
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 57 acacagcagcagcaacaaca 76
||||||||||||||||||||
Sbjct: 349 acacagcagcagcaacaaca 330
>gb|BQ660337.1|BQ660337 HI01P22w HI Hordeum vulgare subsp. vulgare cDNA clone HI01P22
3-PRIME, mRNA sequence
Length = 526
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 60 cagcagcagcaacaacaaca 79
||||||||||||||||||||
Sbjct: 505 cagcagcagcaacaacaaca 486
>gb|BQ739976.1|BQ739976 HB107F03 HB Hordeum vulgare subsp. vulgare cDNA clone HB107F03
similar to ACONITATE HYDRATASE, CYTOPLASMIC (CITRATE
HYDRO-LYASE) (ACONITASE) gi|7437043|pir|T10101 aconitate
hydratase (EC 4.2.1.3) - cucurbit
gi|868003|dbj|BAA06108.1| (D29629) acon..., mRNA
sequence
Length = 626
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 57 acacagcagcagcaacaaca 76
||||||||||||||||||||
Sbjct: 414 acacagcagcagcaacaaca 395
>gb|BQ740113.1|BQ740113 HC107H04 HC Hordeum vulgare subsp. vulgare cDNA clone HC107H04
similar to (AC002328) F20N2.15 [Arabidopsis thaliana],
mRNA sequence
Length = 639
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 842 ccacgacgacgccaccgccg 861
||||||||||||||||||||
Sbjct: 289 ccacgacgacgccaccgccg 270
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 224,940
Number of Sequences: 312970
Number of extensions: 224940
Number of successful extensions: 68554
Number of sequences better than 0.5: 70
Number of HSP's better than 0.5 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68356
Number of HSP's gapped (non-prelim): 182
length of query: 1220
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1201
effective length of database: 169,188,109
effective search space: 203194918909
effective search space used: 203194918909
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)