BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CCR2
(1466 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ766677.1|BQ766677 EBro08_SQ006_F23_R root, 3 week, dro... 392 e-107
gb|BM444997.2|BM444997 EBem09_SQ007_C03_R embryo, 1 Day ger... 246 2e-063
gb|AL503986.1|AL503986 AL503986 Hordeum vulgare Barke roots... 228 4e-058
gb|AL505019.1|AL505019 AL505019 Hordeum vulgare Barke roots... 228 4e-058
gb|BG369168.1|BG369168 HVSMEi0022M03f Hordeum vulgare 20 DA... 220 1e-055
gb|BI950770.1|BI950770 HVSMEl0023C06f Hordeum vulgare spike... 204 6e-051
gb|BM375203.2|BM375203 EBem06_SQ002_K13_R embryo, 21 DPA, n... 190 9e-047
gb|BI958620.1|BI958620 HVSMEn0015P02f Hordeum vulgare rachi... 188 4e-046
gb|BQ763205.1|BQ763205 EBro02_SQ007_F14_R root, 3 week, hyd... 176 1e-042
gb|BI958488.1|BI958488 HVSMEn0015E11f Hordeum vulgare rachi... 163 2e-038
gb|BM442891.2|BM442891 EBro02_SQ001_L17_R root, 3 week, hyd... 159 3e-037
gb|BI958460.1|BI958460 HVSMEn0015C07f Hordeum vulgare rachi... 157 1e-036
gb|CA021049.1|CA021049 HZ38P08r HZ Hordeum vulgare subsp. v... 147 1e-033
gb|AL502301.1|AL502301 AL502301 Hordeum vulgare Barke roots... 133 2e-029
gb|AL503005.1|AL503005 AL503005 Hordeum vulgare Barke roots... 133 2e-029
gb|AL500592.1|AL500592 AL500592 Hordeum vulgare Barke roots... 119 3e-025
gb|BU996119.1|BU996119 HM12I01r HM Hordeum vulgare subsp. v... 105 4e-021
gb|BQ767762.1|BQ767762 EBro08_SQ009_D21 _R root, 3 week, dr... 100 3e-019
gb|AL505753.1|AL505753 AL505753 Hordeum vulgare Barke roots... 94 2e-017
gb|BU975402.1|BU975402 HB31A09r BC Hordeum vulgare subsp. v... 90 2e-016
gb|BU975696.1|BU975696 HB32A09r BC Hordeum vulgare subsp. v... 90 2e-016
gb|BG310404.1|BG310404 HVSMEc0018H08f Hordeum vulgare seedl... 88 1e-015
gb|BF263685.3|BF263685 HV_CEa0007G08f Hordeum vulgare seedl... 84 2e-014
gb|BG344152.2|BG344152 HVSMEg0007N17f Hordeum vulgare pre-a... 76 4e-012
gb|BI959031.1|BI959031 HVSMEn0017M21f Hordeum vulgare rachi... 72 6e-011
gb|BI960699.1|BI960699 HVSMEn0025O19f Hordeum vulgare rachi... 72 6e-011
gb|BJ450530.1|BJ450530 BJ450530 K. Sato unpublished cDNA li... 72 6e-011
gb|BI956546.1|BI956546 HVSMEn0004B08f Hordeum vulgare rachi... 70 2e-010
gb|BG343487.1|BG343487 HVSMEg0005O08f Hordeum vulgare pre-a... 68 9e-010
gb|BG366287.1|BG366287 HVSMEi0006J10f Hordeum vulgare 20 DA... 64 1e-008
gb|BI960557.1|BI960557 HVSMEn0025A09f Hordeum vulgare rachi... 62 6e-008
gb|BF263684.3|BF263684 HV_CEa0007G07f Hordeum vulgare seedl... 62 6e-008
gb|BQ763022.1|BQ763022 EBro02_SQ006_M20_R root, 3 week, hyd... 62 6e-008
gb|BG344412.1|BG344412 HVSMEg0009D04f Hordeum vulgare pre-a... 60 2e-007
gb|BF254781.2|BF254781 HVSMEf0005A11f Hordeum vulgare seedl... 58 9e-007
gb|BG418436.1|BG418436 HVSMEk0022L05f Hordeum vulgare testa... 58 9e-007
gb|BM442873.2|BM442873 EBro02_SQ001_K13_R root, 3 week, hyd... 58 9e-007
gb|BM443024.2|BM443024 EBro02_SQ002_D15_R root, 3 week, hyd... 58 9e-007
gb|BI777845.2|BI777845 EBro08_SQ002_E16_R root, 3 week, dro... 58 9e-007
gb|BQ763026.1|BQ763026 EBro02_SQ006_N19_R root, 3 week, hyd... 58 9e-007
gb|BI958105.1|BI958105 HVSMEn0013G15f Hordeum vulgare rachi... 56 3e-006
gb|BQ763369.1|BQ763369 EBro02_SQ008_J04_R root, 3 week, hyd... 56 3e-006
gb|BJ457952.1|BJ457952 BJ457952 K. Sato unpublished cDNA li... 54 1e-005
gb|AV928908.1|AV928908 AV928908 K. Sato unpublished cDNA li... 52 5e-005
gb|AV929667.1|AV929667 AV929667 K. Sato unpublished cDNA li... 52 5e-005
gb|AV930574.1|AV930574 AV930574 K. Sato unpublished cDNA li... 52 5e-005
gb|AV931426.1|AV931426 AV931426 K. Sato unpublished cDNA li... 52 5e-005
gb|AL506722.1|AL506722 AL506722 Hordeum vulgare Barke devel... 50 2e-004
gb|BE602876.2|BE602876 HVSMEh0100H17f Hordeum vulgare 5-45 ... 50 2e-004
gb|BE215014.1|BE215014 HV_CEb0005I17f Hordeum vulgare seedl... 50 2e-004
gb|BE559021.2|BE559021 HV_CEb0022F12f Hordeum vulgare seedl... 50 2e-004
gb|AV914608.1|AV914608 AV914608 K. Sato unpublished cDNA li... 50 2e-004
gb|AV915311.1|AV915311 AV915311 K. Sato unpublished cDNA li... 50 2e-004
gb|BJ463463.1|BJ463463 BJ463463 K. Sato unpublished cDNA li... 50 2e-004
gb|BJ464137.1|BJ464137 BJ464137 K. Sato unpublished cDNA li... 50 2e-004
gb|BU985911.1|BU985911 HF08P24r HF Hordeum vulgare subsp. v... 50 2e-004
gb|CA007645.1|CA007645 HU08J12r HU Hordeum vulgare subsp. v... 50 2e-004
gb|CA011608.1|CA011608 HT03A12r HT Hordeum vulgare subsp. v... 50 2e-004
gb|CA031581.1|CA031581 HX10G17r HX Hordeum vulgare subsp. v... 50 2e-004
gb|CA032017.1|CA032017 HX11M09r HX Hordeum vulgare subsp. v... 50 2e-004
gb|BG301229.1|BG301229 HVSMEb0020B01f Hordeum vulgare seedl... 48 8e-004
gb|BI957985.1|BI957985 HVSMEn0012J23f Hordeum vulgare rachi... 48 8e-004
gb|BI957975.1|BI957975 HVSMEn0012L23f Hordeum vulgare rachi... 48 8e-004
gb|BI958862.1|BI958862 HVSMEn0016O20f Hordeum vulgare rachi... 48 8e-004
gb|BQ467242.1|BQ467242 HS03C04r HS Hordeum vulgare subsp. v... 48 8e-004
gb|CA001675.1|CA001675 HS05E05r HS Hordeum vulgare subsp. v... 48 8e-004
gb|CA014495.1|CA014495 HT11I05r HT Hordeum vulgare subsp. v... 48 8e-004
gb|BI959591.1|BI959591 HVSMEn0020F03f Hordeum vulgare rachi... 46 0.003
gb|AL504779.1|AL504779 AL504779 Hordeum vulgare Barke roots... 44 0.013
gb|BF628107.2|BF628107 HVSMEb0003C11f Hordeum vulgare seedl... 44 0.013
gb|BF627941.2|BF627941 HVSMEb0006M19f Hordeum vulgare seedl... 44 0.013
gb|BF253936.2|BF253936 HVSMEf0002I16f Hordeum vulgare seedl... 44 0.013
gb|BF255832.2|BF255832 HVSMEf0007P02f Hordeum vulgare seedl... 44 0.013
gb|AW982651.2|AW982651 HVSMEg0003N13f Hordeum vulgare pre-a... 44 0.013
gb|BF262808.2|BF262808 HV_CEa0005A08f Hordeum vulgare seedl... 44 0.013
gb|BE196379.3|BE196379 HVSMEh0092C06f Hordeum vulgare 5-45 ... 44 0.013
gb|AV913567.1|AV913567 AV913567 K. Sato unpublished cDNA li... 44 0.013
gb|AV926665.1|AV926665 AV926665 K. Sato unpublished cDNA li... 44 0.013
gb|BM816674.1|BM816674 HB01C06_T3.ab1 HB Hordeum vulgare su... 44 0.013
gb|BQ459797.1|BQ459797 HA08A23r HA Hordeum vulgare subsp. v... 44 0.013
gb|BQ460124.1|BQ460124 HA07C19r HA Hordeum vulgare subsp. v... 44 0.013
gb|BQ467571.1|BQ467571 HS04D07r HS Hordeum vulgare subsp. v... 44 0.013
gb|BQ470739.1|BQ470739 HX03O06r HX Hordeum vulgare subsp. v... 44 0.013
gb|BU973416.1|BU973416 HB24O01r BC Hordeum vulgare subsp. v... 44 0.013
gb|BU980158.1|BU980158 HA18N13r HA Hordeum vulgare subsp. v... 44 0.013
gb|BU986380.1|BU986380 HF11K09r HF Hordeum vulgare subsp. v... 44 0.013
gb|BU986537.1|BU986537 HF12C17r HF Hordeum vulgare subsp. v... 44 0.013
gb|CA002692.1|CA002692 HS08E02r HS Hordeum vulgare subsp. v... 44 0.013
gb|CA004617.1|CA004617 HS18C15r HS Hordeum vulgare subsp. v... 44 0.013
gb|CA020126.1|CA020126 HV14G15r HV Hordeum vulgare subsp. v... 44 0.013
gb|CA021911.1|CA021911 HZ41I09r HZ Hordeum vulgare subsp. v... 44 0.013
gb|CA023175.1|CA023175 HZ45H08r HZ Hordeum vulgare subsp. v... 44 0.013
gb|CK123698.1|CK123698 BES1824105b24 BES1824 Hordeum vulgar... 44 0.013
gb|AL503414.1|AL503414 AL503414 Hordeum vulgare Barke roots... 42 0.051
gb|BJ468735.1|BJ468735 BJ468735 K. Sato unpublished cDNA li... 42 0.051
gb|BQ464700.1|BQ464700 HU01A05T HU Hordeum vulgare subsp. v... 42 0.051
gb|BQ465481.1|BQ465481 HU03M08r HU Hordeum vulgare subsp. v... 42 0.051
gb|BM369883.2|BM369883 EBem07_SQ004_O04_R embryo, 28 DPA, n... 42 0.051
gb|CA006616.1|CA006616 HU05D06r HU Hordeum vulgare subsp. v... 42 0.051
gb|CA020044.1|CA020044 HV14C19r HV Hordeum vulgare subsp. v... 42 0.051
gb|AL505150.1|AL505150 AL505150 Hordeum vulgare Barke roots... 40 0.20
gb|BE230902.1|BE230902 HVSMEg0001E18f Hordeum vulgare pre-a... 40 0.20
gb|BF259786.2|BF259786 HVSMEf0020E05f Hordeum vulgare seedl... 40 0.20
gb|BG365391.1|BG365391 HVSMEi0002I06f Hordeum vulgare 20 DA... 40 0.20
gb|BE196376.3|BE196376 HVSMEh0092C03f Hordeum vulgare 5-45 ... 40 0.20
gb|BI777336.2|BI777336 EBro03_SQ002_O21_R root, 3 week, wat... 40 0.20
gb|CB883517.1|CB883517 HQ02H24w HQ Hordeum vulgare subsp. v... 40 0.20
gb|BF626636.3|BF626636 HVSMEa0018P10f Hordeum vulgare seedl... 38 0.80
gb|BF258617.2|BF258617 HVSMEf0016D02f Hordeum vulgare seedl... 38 0.80
gb|BF265911.2|BF265911 HV_CEa0013K14f Hordeum vulgare seedl... 38 0.80
gb|CA015399.1|CA015399 HT14D04r HT Hordeum vulgare subsp. v... 38 0.80
gb|AL505660.1|AL505660 AL505660 Hordeum vulgare Barke roots... 36 3.2
gb|AL506776.1|AL506776 AL506776 Hordeum vulgare Barke devel... 36 3.2
gb|AL507329.1|AL507329 AL507329 Hordeum vulgare Barke devel... 36 3.2
gb|BF624632.2|BF624632 HVSMEa0017F04f Hordeum vulgare seedl... 36 3.2
gb|BG343171.1|BG343171 HVSMEg0002P22f Hordeum vulgare pre-a... 36 3.2
gb|BE602666.2|BE602666 HVSMEh0101A14f Hordeum vulgare 5-45 ... 36 3.2
gb|BI960427.1|BI960427 HVSMEn0024I24f Hordeum vulgare rachi... 36 3.2
gb|BF255504.3|BF255504 HVSMEf0007A15f Hordeum vulgare seedl... 36 3.2
gb|BG344198.2|BG344198 HVSMEg0008B03f Hordeum vulgare pre-a... 36 3.2
gb|AV913390.1|AV913390 AV913390 K. Sato unpublished cDNA li... 36 3.2
gb|AV913397.1|AV913397 AV913397 K. Sato unpublished cDNA li... 36 3.2
gb|BM444301.1|BM444301 EBem09_SQ004_M03_R embryo, 1 Day ger... 36 3.2
gb|BQ463622.1|BQ463622 HI05O21r HI Hordeum vulgare subsp. v... 36 3.2
gb|BQ464838.1|BQ464838 HU01M14T HU Hordeum vulgare subsp. v... 36 3.2
gb|BQ467416.1|BQ467416 HS03K24r HS Hordeum vulgare subsp. v... 36 3.2
gb|BQ470323.1|BQ470323 HX02I16r HX Hordeum vulgare subsp. v... 36 3.2
gb|BQ470745.1|BQ470745 HX03O12r HX Hordeum vulgare subsp. v... 36 3.2
gb|BM442520.2|BM442520 EBan01_SQ003_G14_R anther, yellow st... 36 3.2
gb|BM097245.2|BM097245 EBpi07_SQ002_N20_R pistil, 12 DPA, n... 36 3.2
gb|BQ764611.1|BQ764611 EBca01_SQ004_K07_R carpel, pre-anthe... 36 3.2
gb|BU998533.1|BU998533 HI11F21r HI Hordeum vulgare subsp. v... 36 3.2
gb|CA013420.1|CA013420 HT08G10r HT Hordeum vulgare subsp. v... 36 3.2
gb|CA019777.1|CA019777 HV13C06r HV Hordeum vulgare subsp. v... 36 3.2
gb|CA023055.1|CA023055 HZ45B18r HZ Hordeum vulgare subsp. v... 36 3.2
gb|CA023572.1|CA023572 HZ46L02r HZ Hordeum vulgare subsp. v... 36 3.2
gb|CA025277.1|CA025277 HZ51K21r HZ Hordeum vulgare subsp. v... 36 3.2
gb|CB860035.1|CB860035 HI12G16w HI Hordeum vulgare subsp. v... 36 3.2
gb|L44107.1|BLYFX Hordeum vulgare (clone CDO475) chromosome... 36 3.2
>gb|BQ766677.1|BQ766677 EBro08_SQ006_F23_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_F23 5', mRNA sequence
Length = 657
Score = 392 bits (198), Expect = e-107
Identities = 324/366 (88%)
Strand = Plus / Plus
Query: 513 ttcacgtcctccatcggcaccgtgtacatgaacccctaccgtgaccccagcaagcctgtg 572
|||||||| |||||||||| ||||||||||||||| || | |||||||||||||| ||
Sbjct: 292 ttcacgtcgaccatcggcacggtgtacatgaacccccacagggaccccagcaagcccgtc 351
Query: 573 gacgacacctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctac 632
|| |||||||||||||||||||| || || ||||| || || ||||||||||||||||
Sbjct: 352 gatgacacctgctggagcgaccttgactactgcaaaaagacagcgaactggtactgctac 411
Query: 633 gccaagacggtggcggagcagggcgcgtgggaggtggcgcggaagcgagggctggacctg 692
|||||||||||||| ||||||| |||| ||| ||||||| |||| || | || |||
Sbjct: 412 gccaagacggtggccgagcaggacgcgcttgagacggcgcggcagcgcggcatcgagctg 471
Query: 693 gtggtggtgaacccggtgctggtgctgggcccgctgctgcagccgacggtgaacgccagc 752
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 472 gtcgtggtgaacctggtgctggtgctgggcccgctgctgcagccgacggtgaacgcgagc 531
Query: 753 acggaccacgtgatgaagtacctgacggggtcggccacgacctacgtgaacgcggcgcag 812
||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 532 acggagcacgtgatgaagtacctgacggggtcggccaagacgtacgtgaacgcggcgcag 591
Query: 813 gcgtacgtgcacgtcagggacgtggccgaggcgcacgtccgggtgtacgaggcgccccac 872
|||||||||||||| | |||||||||||||||||||||||| || |||||||| ||| ||
Sbjct: 592 gcgtacgtgcacgttaaggacgtggccgaggcgcacgtccgcgtctacgaggcccccgac 651
Query: 873 gcgcac 878
||||||
Sbjct: 652 gcgcac 657
Score = 196 bits (99), Expect = 1e-048
Identities = 204/239 (85%)
Strand = Plus / Plus
Query: 222 gtcaagcgcctcctggagaagggctacacagtccgcggcacggtcaggaaccctgtggat 281
|||||||||||||| ||||||| ||||| || || ||||| || | |||||||| |||
Sbjct: 1 gtcaagcgcctcctccagaaggggtacaccgtgcgaggcaccgttcgcaaccctgttgat 60
Query: 282 ccaaagaacgaccacctgagggcccttgacggcgccgtcgaccgtctcgtcctcctccgc 341
||||||||||| ||| |||| ||| |||||||||||| |||||| |||||||||||||||
Sbjct: 61 ccaaagaacgatcacttgagagcctttgacggcgccgccgaccgcctcgtcctcctccgc 120
Query: 342 gccgacctgctggacccacagagccttgccgaggccttctccggctgtgacggcgtcttc 401
||||| || |||| ||| | | ||| | |||||||||| ||||||| || ||| |||||
Sbjct: 121 gccgatcttatggagccagaaaccctcgtcgaggccttcaccggctgcgagggcatcttc 180
Query: 402 cacgccgcctccccggtcaccgatgaccctgagatgatgatcgagccagcgatccgggg 460
|||||||| ||||| |||||||| |||||||||| |||||||||||| |||||||||||
Sbjct: 181 cacgccgcttcccccgtcaccgacgaccctgagaagatgatcgagccggcgatccgggg 239
>gb|BM444997.2|BM444997 EBem09_SQ007_C03_R embryo, 1 Day germination, no treatment, cv Optic,
EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ007_C03 5', mRNA sequence
Length = 322
Score = 246 bits (124), Expect = 2e-063
Identities = 214/242 (88%), Gaps = 4/242 (1%)
Strand = Plus / Plus
Query: 879 ggccgctacatctgcgccgagagcacc---ctgcaccgcggcgacctctgccgcgtcctc 935
||||||||||||||||||||| ||||| || ||||||||||| |||||||||||||||
Sbjct: 1 ggccgctacatctgcgccgagggcaccacgctccaccgcggcgagctctgccgcgtcctc 60
Query: 936 gccaagctcttcccggagtaccccgtacccaccaagtgcaaggaccaggttaaccctccg 995
| |||||||||||| ||||| |||||||||||||||||||||||| |||| ||||| |||
Sbjct: 61 ggcaagctcttccccgagtatcccgtacccaccaagtgcaaggacgaggtgaacccaccg 120
Query: 996 gtggtaggatacaagttcaccaaccagaggctcaaggatctggggatggacttcgtgccg 1055
||| ||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct: 121 gtgaaagggtacaagttcactaaccagaggctcaaggacctggggatggagttcgtgccg 180
Query: 1056 gt-ctgcagtgcctctacgagacggtcaccagcctccaggagaaaggcatgctgcccgtg 1114
|| |||||| | | ||||||||||| | ||||||||||||||||| |||||||| |||
Sbjct: 181 gtgctgcagagtatatacgagacggtgaagagcctccaggagaaagggatgctgccggtg 240
Query: 1115 ct 1116
||
Sbjct: 241 ct 242
>gb|AL503986.1|AL503986 AL503986 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01C19V 5', mRNA sequence
Length = 614
Score = 228 bits (115), Expect = 4e-058
Identities = 244/287 (85%)
Strand = Plus / Plus
Query: 174 cggacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctc 233
|||||||| ||||| ||||| || || || ||||| ||||| ||||||||||||||||||
Sbjct: 73 cggacggtgtgcgtcaccggcgccggcggcttcatcgcctcgtggctcgtcaagcgcctc 132
Query: 234 ctggagaagggctacacagtccgcggcacggtcaggaaccctgtggatccaaagaacgac 293
|| ||||||| ||||| || || ||||| || | |||||||| ||||||||||||||
Sbjct: 133 ctccagaaggggtacaccgtgcgaggcaccgttcgcaaccctgttgatccaaagaacgat 192
Query: 294 cacctgagggcccttgacggcgccgtcgaccgtctcgtcctcctccgcgccgacctgctg 353
||| |||| ||| |||||||||||| |||||| |||||||||||||||||||| || ||
Sbjct: 193 cacttgagagcctttgacggcgccgccgaccgcctcgtcctcctccgcgccgatcttatg 252
Query: 354 gacccacagagccttgccgaggccttctccggctgtgacggcgtcttccacgccgcctcc 413
|| ||| | | ||| | |||||||||| ||||||| || ||| ||||||||||||| |||
Sbjct: 253 gagccagaaaccctcgtcgaggccttcaccggctgcgagggcatcttccacgccgcttcc 312
Query: 414 ccggtcaccgatgaccctgagatgatgatcgagccagcgatccgggg 460
|| |||||||| |||||||||| |||||||||||| |||||||||||
Sbjct: 313 cccgtcaccgacgaccctgagaagatgatcgagccggcgatccgggg 359
Score = 107 bits (54), Expect = 1e-021
Identities = 122/142 (85%), Gaps = 2/142 (1%)
Strand = Plus / Plus
Query: 513 ttcacgtcctccatcggcaccgtgtacatgaacccctaccgtgacccca-gcaagcctgt 571
|||||||| |||||||||| ||||||||||||||| || | ||||||| ||||||| ||
Sbjct: 412 ttcacgtcgaccatcggcacggtgtacatgaacccccacagggaccccaagcaagcccgt 471
Query: 572 ggacg-acacctgctggagcgacctcgagtattgcaagaacacccagaactggtactgct 630
|| | ||||||||||||||||||| || || ||||| || || ||||||||||||||
Sbjct: 472 cgatggacacctgctggagcgaccttgactactgcaaaaagacagcgaactggtactgct 531
Query: 631 acgccaagacggtggcggagca 652
|||||||||||||||| |||||
Sbjct: 532 acgccaagacggtggccgagca 553
>gb|AL505019.1|AL505019 AL505019 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07C05V 5', mRNA sequence
Length = 610
Score = 228 bits (115), Expect = 4e-058
Identities = 244/287 (85%)
Strand = Plus / Plus
Query: 174 cggacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctc 233
|||||||| ||||| ||||| || || || ||||| ||||| ||||||||||||||||||
Sbjct: 79 cggacggtgtgcgtcaccggcgccggcggcttcatcgcctcgtggctcgtcaagcgcctc 138
Query: 234 ctggagaagggctacacagtccgcggcacggtcaggaaccctgtggatccaaagaacgac 293
|| ||||||| ||||| || || ||||| || | |||||||| ||||||||||||||
Sbjct: 139 ctccagaaggggtacaccgtgcgaggcaccgttcgcaaccctgttgatccaaagaacgat 198
Query: 294 cacctgagggcccttgacggcgccgtcgaccgtctcgtcctcctccgcgccgacctgctg 353
||| |||| ||| |||||||||||| |||||| |||||||||||||||||||| || ||
Sbjct: 199 cacttgagagcctttgacggcgccgccgaccgcctcgtcctcctccgcgccgatcttatg 258
Query: 354 gacccacagagccttgccgaggccttctccggctgtgacggcgtcttccacgccgcctcc 413
|| ||| | | ||| | |||||||||| ||||||| || ||| ||||||||||||| |||
Sbjct: 259 gagccagaaaccctcgtcgaggccttcaccggctgcgagggcatcttccacgccgcttcc 318
Query: 414 ccggtcaccgatgaccctgagatgatgatcgagccagcgatccgggg 460
|| |||||||| |||||||||| |||||||||||| |||||||||||
Sbjct: 319 cccgtcaccgacgaccctgagaagatgatcgagccggcgatccgggg 365
Score = 135 bits (68), Expect = 5e-030
Identities = 127/147 (86%)
Strand = Plus / Plus
Query: 513 ttcacgtcctccatcggcaccgtgtacatgaacccctaccgtgaccccagcaagcctgtg 572
|||||||| |||||||||| ||||||||||||||| || | |||||||||||||| ||
Sbjct: 418 ttcacgtcgaccatcggcacggtgtacatgaacccccacagggaccccagcaagcccgtc 477
Query: 573 gacgacacctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctac 632
|| |||||||||||||||||||| || || ||||| || || ||||||| ||||||||
Sbjct: 478 gatgacacctgctggagcgaccttgactactgcaaaaagacagcgaactggnactgctac 537
Query: 633 gccaagacggtggcggagcagggcgcg 659
|||||||||||||| ||||||| ||||
Sbjct: 538 gccaagacggtggccgagcaggacgcg 564
>gb|BG369168.1|BG369168 HVSMEi0022M03f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0022M03f, mRNA sequence
Length = 828
Score = 220 bits (111), Expect = 1e-055
Identities = 243/287 (84%)
Strand = Plus / Plus
Query: 174 cggacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctc 233
|||||||| ||||| ||||| || || || ||||| ||||| ||||||||||||||||||
Sbjct: 80 cggacggtgtgcgtcaccggcgccggcggcttcatcgcctcgtggctcgtcaagcgcctc 139
Query: 234 ctggagaagggctacacagtccgcggcacggtcaggaaccctgtggatccaaagaacgac 293
|| ||||||| ||||| || || ||||| || | |||||||| ||||||||||||||
Sbjct: 140 ctccagaaggggtacaccgtgcgaggcaccgttcgcaaccctgttgatccaaagaacgat 199
Query: 294 cacctgagggcccttgacggcgccgtcgaccgtctcgtcctcctccgcgccgacctgctg 353
||| |||| ||| |||||||||||| |||||| |||||||||||||||||||| || ||
Sbjct: 200 cacttgagagcctttgacggcgccgccgaccgcctcgtcctcctccgcgccgatcttatg 259
Query: 354 gacccacagagccttgccgaggccttctccggctgtgacggcgtcttccacgccgcctcc 413
|| ||| | | ||| | |||||||||| ||||||| || ||| ||||||||||||| |||
Sbjct: 260 gagccagaaaccctcgtcgaggccttcaccggctgcgagggcatcttccacgccgcttcc 319
Query: 414 ccggtcaccgatgaccctgagatgatgatcgagccagcgatccgggg 460
|| || ||||| |||||||||| |||||||||||| |||||||||||
Sbjct: 320 cccgtgaccgacgaccctgagaagatgatcgagccggcgatccgggg 366
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 539 catgaacccctaccgtgaccccagcaagcctgtggacgacacctgctggagcgacct 595
|||||||||| || | |||||| || |||| ||||| ||| ||||||||||||||||
Sbjct: 445 catgaacccccacagggaccccggcgagcccgtggatgacgcctgctggagcgacct 501
>gb|BI950770.1|BI950770 HVSMEl0023C06f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023C06f, mRNA sequence
Length = 994
Score = 204 bits (103), Expect = 6e-051
Identities = 238/283 (84%)
Strand = Plus / Plus
Query: 174 cggacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctc 233
|||||||| ||||| ||||| || || || ||||| ||||| ||||||||||||||||||
Sbjct: 222 cggacggtgtgcgtcaccggcgccggcggcttcatcgcctcgtggctcgtcaagcgcctc 281
Query: 234 ctggagaagggctacacagtccgcggcacggtcaggaaccctgtggatccaaagaacgac 293
|| ||||||| ||||| || || ||||| || | |||||||| ||||||||||||||
Sbjct: 282 ctccagaaggggtacaccgtgcgaggcaccgttcgcaaccctgttgatccaaagaacgat 341
Query: 294 cacctgagggcccttgacggcgccgtcgaccgtctcgtcctcctccgcgccgacctgctg 353
||| |||| ||| |||||||||||| |||||| ||||| |||||||||||||| || ||
Sbjct: 342 cacttgagagcctttgacggcgccgccgaccgcctcgttctcctccgcgccgatcttatg 401
Query: 354 gacccacagagccttgccgaggccttctccggctgtgacggcgtcttccacgccgcctcc 413
|| ||| | | ||| | |||||||||| ||||||| || ||| ||||||||||||| | |
Sbjct: 402 gagccagaaaccctcgtcgaggccttcaccggctgcgagggcatcttccacgccgctttc 461
Query: 414 ccggtcaccgatgaccctgagatgatgatcgagccagcgatcc 456
|| |||||||| |||||||||| |||||||||||| |||||||
Sbjct: 462 cccgtcaccgacgaccctgagaagatgatcgagcccgcgatcc 504
>gb|BM375203.2|BM375203 EBem06_SQ002_K13_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ002_K13 5', mRNA sequence
Length = 546
Score = 190 bits (96), Expect = 9e-047
Identities = 338/417 (81%), Gaps = 5/417 (1%)
Strand = Plus / Plus
Query: 573 gacgacacctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctac 632
|||||| | ||||||||||||||||| || |||||| | ||| |||||||||||||||||
Sbjct: 14 gacgactcgtgctggagcgacctcgactactgcaagcaaaccaagaactggtactgctac 73
Query: 633 gccaagacggtggcggagcagggcgcgtgggaggtggcgcggaagcgagggctggacctg 692
||||||||| | ||||||| |||||||||||||| |||||| || ||||||||||||
Sbjct: 74 gccaagacgatcgcggagcggggcgcgtgggaggctgcgcggtcgctggggctggacctg 133
Query: 693 gtggtggtgaacccggtgctggtgctgggcccgctgctgcagccgacggtgaacgccagc 752
| |||||||| ||||||| || ||| ||| |||||||||||| | ||||| |||||
Sbjct: 134 gcggtggtgatcccggtggtgacgctcggcgagctgctgcagcccagtatgaacaccagc 193
Query: 753 acggaccacgtgatgaagtacctgacggggtcggccacgacctacgtgaacgcggcgcag 812
|| | ||| | | |||||||| || || ||||| | | ||||| |||| | ||||
Sbjct: 194 accaagcacatactcaagtacctcaccggcgaggccaaggcgtacgtcaacgagtcgcac 253
Query: 813 gcgtacgtgcacgtcagggacgtggccgaggcgcacgtccgggtgtacgaggcgccccac 872
|| |||||||| |||| ||||| ||||||||||||||| ||||| | |||||||| ||
Sbjct: 254 gcctacgtgcatgtcaaggacgccgccgaggcgcacgtcagggtgctccaggcgcccaac 313
Query: 873 gc----gcacggccgctacatctgcgccgagagcaccctgcaccgcggcgacctctgccg 928
|| | || |||||||| ||||||||||||| || |||||||||||||| ||||||||
Sbjct: 314 gccgggggac-gccgctacgtctgcgccgagaggacgctgcaccgcggcgagctctgccg 372
Query: 929 cgtcctcgccaagctcttcccggagtaccccgtacccaccaagtgcaaggaccaggt 985
|||||||| |||||||||||||||||| | ||||| | ||||||||| ||||
Sbjct: 373 gatcctcgccggcctcttcccggagtaccccattcccacaagatgcaaggacgaggt 429
>gb|BI958620.1|BI958620 HVSMEn0015P02f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0015P02f, mRNA sequence
Length = 643
Score = 188 bits (95), Expect = 4e-046
Identities = 240/287 (83%), Gaps = 1/287 (0%)
Strand = Plus / Plus
Query: 174 cggacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctc 233
|||||||| ||||| ||||| || || || ||||| ||||| ||||||||||||||||||
Sbjct: 222 cggacggtgtgcgtcaccggcgccggcggcttcatcgcctcgtggctcgtcaagcgcctc 281
Query: 234 ctggagaagggctacacagtccgcggcacggtcaggaaccctgtggatccaaagaacgac 293
|| ||||||| ||||| || || ||||| || | |||||||| ||||||||||||||
Sbjct: 282 ctccagaaggggtacaccgtgcgaggcaccgttcgcaaccctgttgatccaaagaacgat 341
Query: 294 cacctgagggcccttgacggcgccgtcgaccgtctcgtcctcctccgcgccgacctgctg 353
||| |||| ||| |||||||||||| |||||| |||||||||||||||||||| || ||
Sbjct: 342 cacttgagagcctttgacggcgccgccgaccgcctcgtcctcctccgcgccgatcttatg 401
Query: 354 gacccacagagccttgccgaggccttctccggctgtgacggcgtcttccacgccgcctcc 413
|| ||| | | ||| | |||||||||| ||||||| | ||| ||||||||||||| |||
Sbjct: 402 gagccagaaaccctcgtcgaggccttcaccggctgcaagggcatcttccacgccgcttcc 461
Query: 414 ccggtcaccgatgaccctgagatgatgatcgagccagcgatccgggg 460
|| || ||||| |||||||||| | ||||||||| |||||||||||
Sbjct: 462 cccgtgaccgacgaccctgaga-aaagatcgagccggcgatccgggg 507
>gb|BQ763205.1|BQ763205 EBro02_SQ007_F14_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ007_F14 5', mRNA sequence
Length = 426
Score = 176 bits (89), Expect = 1e-042
Identities = 152/173 (87%)
Strand = Plus / Plus
Query: 580 cctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctacgccaaga 639
||||||||||||| || |||| |||||||| ||| |||||||||||||||||| ||||
Sbjct: 131 cctgctggagcgatcttgagttctgcaagaaaaccaagaactggtactgctacggcaagg 190
Query: 640 cggtggcggagcagggcgcgtgggaggtggcgcggaagcgagggctggacctggtggtgg 699
||||||||||||||| ||||||||| |||| || ||| || |||||||||||||||
Sbjct: 191 cggtggcggagcaggcggcgtgggagaaggcgagggcgcgcggcgtggacctggtggtgg 250
Query: 700 tgaacccggtgctggtgctgggcccgctgctgcagccgacggtgaacgccagc 752
||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct: 251 tgaacccggtgctggtggtcgggccgctgctgcagccgacggtgaacgccagc 303
Score = 46.1 bits (23), Expect = 0.003
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 801 aacgcggcgcaggcgtacgtgcacgtcagggacgtggccgaggcgcacgtccgggtgtac 860
||||||| ||| ||||||||| |||| | ||||| |||| |||||| ||||||| | |
Sbjct: 352 aacgcggtgcaagcgtacgtggacgtgcgcgacgtcgccggcgcgcacctccgggtcttc 411
Query: 861 gaggcgcccca 871
|||||||||||
Sbjct: 412 gaggcgcccca 422
Score = 36.2 bits (18), Expect = 3.2
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 510 gtgttcacgtcctccatcggcaccgt 535
||||||||||| ||||||||| ||||
Sbjct: 61 gtgttcacgtcgtccatcggcgccgt 86
>gb|BI958488.1|BI958488 HVSMEn0015E11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0015E11f, mRNA sequence
Length = 620
Score = 163 bits (82), Expect = 2e-038
Identities = 133/150 (88%)
Strand = Plus / Plus
Query: 603 tgcaagaacacccagaactggtactgctacgccaagacggtggcggagcagggcgcgtgg 662
|||||||| ||| |||||||||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 13 tgcaagaaaaccaagaactggtactgctacggcaaggcggtggcggagcaggcggcgtgg 72
Query: 663 gaggtggcgcggaagcgagggctggacctggtggtggtgaacccggtgctggtgctgggc 722
||| |||| || ||| || |||||||||||||||||||||||||||||||| | ||
Sbjct: 73 gagaaggcgagggcgcgcggcgtggacctggtggtggtgaacccggtgctggtggtcggg 132
Query: 723 ccgctgctgcagccgacggtgaacgccagc 752
||||||||||||||||||||||||||||||
Sbjct: 133 ccgctgctgcagccgacggtgaacgccagc 162
Score = 89.7 bits (45), Expect = 2e-016
Identities = 132/161 (81%)
Strand = Plus / Plus
Query: 801 aacgcggcgcaggcgtacgtgcacgtcagggacgtggccgaggcgcacgtccgggtgtac 860
||||||| ||||||||||||| |||| | ||||| |||| |||||| ||||||| | |
Sbjct: 211 aacgcggtgcaggcgtacgtggacgtgcgcgacgtcgccggcgcgcacctccgggtcttc 270
Query: 861 gaggcgccccacgcgcacggccgctacatctgcgccgagagcaccctgcaccgcggcgac 920
||||||||||| || |||||||||| ||||||||||| || |||||||||| |||
Sbjct: 271 gaggcgccccaagcctccggccgctacctctgcgccgagcgcgtcctgcaccgccaggac 330
Query: 921 ctctgccgcgtcctcgccaagctcttcccggagtaccccgt 961
||| || | ||||| ||||||||||||| ||||||||||
Sbjct: 331 gtcttccacatcctctccaagctcttcccctagtaccccgt 371
>gb|BM442891.2|BM442891 EBro02_SQ001_L17_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ001_L17 5', mRNA sequence
Length = 438
Score = 159 bits (80), Expect = 3e-037
Identities = 141/160 (88%), Gaps = 1/160 (0%)
Strand = Plus / Plus
Query: 958 ccgtacccaccaagtgcaaggaccaggttaaccctccggtggtaggatacaagttcacca 1017
||||||||||||||||||||||| |||| ||||| |||||| ||| ||||||||||| |
Sbjct: 1 ccgtacccaccaagtgcaaggacgaggtgaacccaccggtgaaagggtacaagttcacta 60
Query: 1018 accagaggctcaaggatctggggatggacttcgtgccggt-ctgcagtgcctctacgaga 1076
|||||||||||||||| ||||||||||| ||||||||||| |||||| | | |||||||
Sbjct: 61 accagaggctcaaggacctggggatggagttcgtgccggtgctgcagagtatatacgaga 120
Query: 1077 cggtcaccagcctccaggagaaaggcatgctgcccgtgct 1116
|||| | ||||||||||||||||| |||||||| |||||
Sbjct: 121 cggtgaagagcctccaggagaaagggatgctgccggtgct 160
>gb|BI958460.1|BI958460 HVSMEn0015C07f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0015C07f, mRNA sequence
Length = 656
Score = 157 bits (79), Expect = 1e-036
Identities = 130/147 (88%)
Strand = Plus / Plus
Query: 603 tgcaagaacacccagaactggtactgctacgccaagacggtggcggagcagggcgcgtgg 662
|||||||| ||| |||||||||||||||||| |||| ||||||||||||||| ||||||
Sbjct: 13 tgcaagaaaaccaagaactggtactgctacggcaaggcggtggcggagcaggcggcgtgg 72
Query: 663 gaggtggcgcggaagcgagggctggacctggtggtggtgaacccggtgctggtgctgggc 722
||| |||| || ||| || |||||||||||||||||||||||||||||||| | ||
Sbjct: 73 gagaaggcgagggcgcgcggcgtggacctggtggtggtgaacccggtgctggtggtcggg 132
Query: 723 ccgctgctgcagccgacggtgaacgcc 749
|||||||||||||||||||||||||||
Sbjct: 133 ccgctgctgcagccgacggtgaacgcc 159
Score = 67.9 bits (34), Expect = 9e-010
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 801 aacgcggcgcaggcgtacgtgcacgtcagggacgtggccgaggcgcacgtccgggtgtac 860
||||||| ||||||||||||| |||| | ||||| |||| |||||| ||||||| | |
Sbjct: 211 aacgcggtgcaggcgtacgtggacgtgcgcgacgtcgccggcgcgcacctccgggtcttc 270
Query: 861 gaggcgccccacgcgcacggccgctacatctgcgccga 898
||||||||||| || |||||||||| ||||||||||
Sbjct: 271 gaggcgccccaggcctccggccgctacctctgcgccga 308
>gb|CA021049.1|CA021049 HZ38P08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ38P08
5-PRIME, mRNA sequence
Length = 465
Score = 147 bits (74), Expect = 1e-033
Identities = 179/214 (83%)
Strand = Plus / Plus
Query: 523 ccatcggcaccgtgtacatgaacccctaccgtgaccccagcaagcctgtggacgacacct 582
||||||||||| |||||||||||||| |||| |||||| | ||| | |||||| | |
Sbjct: 221 ccatcggcaccatgtacatgaacccccaccgcgaccccgacgcgccgctcgacgactcgt 280
Query: 583 gctggagcgacctcgagtattgcaagaacacccagaactggtactgctacgccaagacgg 642
|||||||||||||||| || |||||| | ||| ||||||||||||||||||||||||||
Sbjct: 281 gctggagcgacctcgactactgcaagcaaaccaagaactggtactgctacgccaagacga 340
Query: 643 tggcggagcagggcgcgtgggaggtggcgcggaagcgagggctggacctggtggtggtga 702
| ||||||| |||||||||||| | |||||| || ||||||||||||| ||||||||
Sbjct: 341 tcgcggagcggggcgcgtgggacgctgcgcggtcgctggggctggacctggcggtggtga 400
Query: 703 acccggtgctggtgctgggcccgctgctgcagcc 736
||||||| || ||| ||| ||||||||||||
Sbjct: 401 tcccggtggtgacgctcggcgagctgctgcagcc 434
>gb|AL502301.1|AL502301 AL502301 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07C05u 3', mRNA sequence
Length = 501
Score = 133 bits (67), Expect = 2e-029
Identities = 128/147 (87%), Gaps = 1/147 (0%)
Strand = Plus / Minus
Query: 971 gtgcaaggaccaggttaaccctccggtggtaggatacaagttcaccaaccagaggctcaa 1030
|||||||||| |||| ||||| |||||| ||| ||||||||||| ||||||||||||||
Sbjct: 446 gtgcaaggacgaggtgaacccaccggtgaaagggtacaagttcactaaccagaggctcaa 387
Query: 1031 ggatctggggatggacttcgtgccggt-ctgcagtgcctctacgagacggtcaccagcct 1089
||| ||||||||||| ||||||||||| |||||| | | ||||||||||| | |||||
Sbjct: 386 ggacctggggatggagttcgtgccggtgctgcagagtatatacgagacggtgaagagcct 327
Query: 1090 ccaggagaaaggcatgctgcccgtgct 1116
|||||||||||| |||||||| |||||
Sbjct: 326 ccaggagaaagggatgctgccggtgct 300
>gb|AL503005.1|AL503005 AL503005 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09G19u 3', mRNA sequence
Length = 640
Score = 133 bits (67), Expect = 2e-029
Identities = 128/147 (87%), Gaps = 1/147 (0%)
Strand = Plus / Minus
Query: 971 gtgcaaggaccaggttaaccctccggtggtaggatacaagttcaccaaccagaggctcaa 1030
|||||||||| |||| ||||| |||||| ||| ||||||||||| ||||||||||||||
Sbjct: 449 gtgcaaggacgaggtgaacccaccggtgaaagggtacaagttcactaaccagaggctcaa 390
Query: 1031 ggatctggggatggacttcgtgccggt-ctgcagtgcctctacgagacggtcaccagcct 1089
||| ||||||||||| ||||||||||| |||||| | | ||||||||||| | |||||
Sbjct: 389 ggacctggggatggagttcgtgccggtgctgcagagtatatacgagacggtgaagagcct 330
Query: 1090 ccaggagaaaggcatgctgcccgtgct 1116
|||||||||||| |||||||| |||||
Sbjct: 329 ccaggagaaagggatgctgccggtgct 303
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/43 (90%), Gaps = 1/43 (2%)
Strand = Plus / Minus
Query: 924 tgccgcgtcctcgccaagctctt-cccggagtaccccgtaccc 965
||| ||||||||| ||||||||| ||||||||| |||||||||
Sbjct: 621 tgcngcgtcctcggcaagctcttccccggagtatcccgtaccc 579
>gb|AL500592.1|AL500592 AL500592 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01C19u 3', mRNA sequence
Length = 472
Score = 119 bits (60), Expect = 3e-025
Identities = 128/148 (86%), Gaps = 2/148 (1%)
Strand = Plus / Minus
Query: 971 gtgcaaggaccaggttaaccct-ccggtggtaggatacaagttcaccaaccagaggctca 1029
|||||||||| |||| ||||| |||||| ||| ||||||||||| |||||||||||||
Sbjct: 447 gtgcaaggacgaggtgaaccccaccggtgaaagggtacaagttcactaaccagaggctca 388
Query: 1030 aggatctggggatggacttcgtgccggt-ctgcagtgcctctacgagacggtcaccagcc 1088
|||| ||||||||||| ||||||||||| |||||| | | ||||||||||| | ||||
Sbjct: 387 aggacctggggatggagttcgtgccggtgctgcagagtatatacgagacggtgaagagcc 328
Query: 1089 tccaggagaaaggcatgctgcccgtgct 1116
||||||||||||| |||||||| |||||
Sbjct: 327 tccaggagaaagggatgctgccggtgct 300
>gb|BU996119.1|BU996119 HM12I01r HM Hordeum vulgare subsp. vulgare cDNA clone HM12I01
5-PRIME, mRNA sequence
Length = 482
Score = 105 bits (53), Expect = 4e-021
Identities = 110/129 (85%)
Strand = Plus / Plus
Query: 523 ccatcggcaccgtgtacatgaacccctaccgtgaccccagcaagcctgtggacgacacct 582
||||||||||| |||||||||||||| |||| |||||| | ||| | |||||| | |
Sbjct: 354 ccatcggcaccatgtacatgaacccccaccgcgaccccgacgcgccgctcgacgactcgt 413
Query: 583 gctggagcgacctcgagtattgcaagaacacccagaactggtactgctacgccaagacgg 642
|||||||||||||||| || |||||| | ||| ||||||||||||||||||||||||||
Sbjct: 414 gctggagcgacctcgactactgcaagcaaaccaagaactggtactgctacgccaagacga 473
Query: 643 tggcggagc 651
| |||||||
Sbjct: 474 tcgcggagc 482
>gb|BQ767762.1|BQ767762 EBro08_SQ009_D21 _R root, 3 week, drought-stressed, cv Optic,
EBro08 Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_D21 5', mRNA sequence
Length = 434
Score = 99.6 bits (50), Expect = 3e-019
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 685 tggacctggtggtggtgaacccggtgctggtgctgggcccgctgctgcagccgacggtga 744
|||||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||
Sbjct: 370 tggacctggtggtggtgaacccggtgctggtggtcgggccgntgctgcagccgacggtga 429
Query: 745 acgcc 749
|||||
Sbjct: 430 acgcc 434
Score = 48.1 bits (24), Expect = 8e-004
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 163 ccgggcaagggcggacggtttgcgtgaccggagctggagggttcattgcctcctggctcg 222
||||||| |||| ||| || ||||| ||||| || | |||| ||| || || |||||||
Sbjct: 111 ccgggcacgggcagaccgtgtgcgtcaccggcgccgccgggtacatcgcgtcgtggctcg 170
Query: 223 tcaagcgcctcctggagaagggctacac 250
|||||| |||||||||| |||||||||
Sbjct: 171 tcaagctgctcctggagaggggctacac 198
>gb|AL505753.1|AL505753 AL505753 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09G19V 5', mRNA sequence
Length = 491
Score = 93.7 bits (47), Expect = 2e-017
Identities = 74/83 (89%)
Strand = Plus / Plus
Query: 513 ttcacgtcctccatcggcaccgtgtacatgaacccctaccgtgaccccagcaagcctgtg 572
|||||||| |||||||||| ||||||||||||||| || | |||||||||||||| ||
Sbjct: 75 ttcacgtcgaccatcggcacggtgtacatgaacccccacagggaccccagcaagcccgtc 134
Query: 573 gacgacacctgctggagcgacct 595
|| ||||||||||||||||||||
Sbjct: 135 gatgacacctgctggagcgacct 157
>gb|BU975402.1|BU975402 HB31A09r BC Hordeum vulgare subsp. vulgare cDNA clone HB31A09
5-PRIME, mRNA sequence
Length = 557
Score = 89.7 bits (45), Expect = 2e-016
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 692 ggtggtggtgaacccggtgctggtgctgggcccgctgctgcagccgacggtgaacgccag 751
|||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||
Sbjct: 9 ggtggtggtgaacccggtgctggtgcagggcccggcgctgcagccggcggtgaacgccag 68
Query: 752 c 752
|
Sbjct: 69 c 69
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 1061 cagtgcctctacgagacggtcaccagcctccaggagaaaggcat 1104
|||||||||||||| || ||| |||| |||||||||| |||||
Sbjct: 385 cagtgcctctacgacaccgtcgtcagcttccaggagaagggcat 428
>gb|BU975696.1|BU975696 HB32A09r BC Hordeum vulgare subsp. vulgare cDNA clone HB32A09
5-PRIME, mRNA sequence
Length = 559
Score = 89.7 bits (45), Expect = 2e-016
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 692 ggtggtggtgaacccggtgctggtgctgggcccgctgctgcagccgacggtgaacgccag 751
|||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||
Sbjct: 9 ggtggtggtgaacccggtgctggtgcagggcccggcgctgcagccggcggtgaacgccag 68
Query: 752 c 752
|
Sbjct: 69 c 69
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 1061 cagtgcctctacgagacggtcaccagcctccaggagaaaggcat 1104
|||||||||||||| || ||| |||| |||||||||| |||||
Sbjct: 385 cagtgcctctacgacaccgtcgtcagcttccaggagaagggcat 428
>gb|BG310404.1|BG310404 HVSMEc0018H08f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0018H08f, mRNA sequence
Length = 832
Score = 87.7 bits (44), Expect = 1e-015
Identities = 119/144 (82%)
Strand = Plus / Plus
Query: 523 ccatcggcaccgtgtacatgaacccctaccgtgaccccagcaagcctgtggacgacacct 582
||||||||||| |||||||||||||| |||| |||||| | ||| | |||||| | |
Sbjct: 465 ccatcggcaccatgtacatgaacccccaccgcgaccccgacgcgccgctcgacgactcgt 524
Query: 583 gctggagcgacctcgagtattgcaagaacacccagaactggtactgctacgccaagacgg 642
||||||||||||| || |||||| | ||| ||||||||||||||||||||||||||
Sbjct: 525 gctggagcgacctgtgctactgcaagcaaaccaagaactggtactgctacgccaagacga 584
Query: 643 tggcggagcagggcgcgtgggagg 666
| ||||||| |||| |||| ||||
Sbjct: 585 tcgcggagcggggcccgtgagagg 608
>gb|BF263685.3|BF263685 HV_CEa0007G08f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0007G08f, mRNA sequence
Length = 819
Score = 83.8 bits (42), Expect = 2e-014
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 580 cctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctacgccaaga 639
||||||||||| ||||||||| |||||||| ||| |||||||||||||||||| ||||
Sbjct: 473 cctgctggagcaacctcgagttctgcaagaagaccaagaactggtactgctacgggaaga 532
Query: 640 cggtggcgga 649
||||||||||
Sbjct: 533 cggtggcgga 542
Score = 69.9 bits (35), Expect = 2e-010
Identities = 77/91 (84%)
Strand = Plus / Plus
Query: 382 ccggctgtgacggcgtcttccacgccgcctccccggtcaccgatgaccctgagatgatga 441
||||||| |||||||||||||| ||||||| ||||||||||| ||||| ||| ||||
Sbjct: 272 ccggctgccacggcgtcttccacaccgcctcgccggtcaccgacgacccggaggagatgg 331
Query: 442 tcgagccagcgatccggggcacgcgctacgt 472
| ||||| ||| | ||||||||||||||||
Sbjct: 332 tggagccggcggtgaggggcacgcgctacgt 362
Score = 48.1 bits (24), Expect = 8e-004
Identities = 84/104 (80%)
Strand = Plus / Plus
Query: 171 gggcggacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgc 230
|||| |||||| ||||||||||| || || || | ||| | || ||| ||||||||| |
Sbjct: 61 gggcagacggtgtgcgtgaccggcgccggcggctacatcgggtcttggatcgtcaagctc 120
Query: 231 ctcctggagaagggctacacagtccgcggcacggtcaggaaccc 274
|| ||||||||||| ||| | || || ||||| |||||||||||
Sbjct: 121 ctgctggagaaggggtacgccgtgcgaggcaccgtcaggaaccc 164
>gb|BG344152.2|BG344152 HVSMEg0007N17f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0007N17f, mRNA sequence
Length = 796
Score = 75.8 bits (38), Expect = 4e-012
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 580 cctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctacgccaaga 639
||||||||||||| || |||| |||||||| ||| |||||||||||||||||| ||||
Sbjct: 550 cctgctggagcgatcttgagttctgcaagaaaaccaagaactggtactgctacggcaagg 609
Query: 640 cggtggcgga 649
||||||||||
Sbjct: 610 cggtggcgga 619
Score = 48.1 bits (24), Expect = 8e-004
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 163 ccgggcaagggcggacggtttgcgtgaccggagctggagggttcattgcctcctggctcg 222
||||||| |||| ||| || ||||| ||||| || | |||| ||| || || |||||||
Sbjct: 130 ccgggcacgggcagaccgtgtgcgtcaccggcgccgccgggtacatcgcgtcgtggctcg 189
Query: 223 tcaagcgcctcctggagaagggctacac 250
|||||| |||||||||| |||||||||
Sbjct: 190 tcaagctgctcctggagaggggctacac 217
Score = 44.1 bits (22), Expect = 0.013
Identities = 117/148 (79%), Gaps = 3/148 (2%)
Strand = Plus / Plus
Query: 391 acggcgtcttccacgccgcctccccggtcaccgatgaccctgagatgatgatcgagccag 450
||||||| |||||| |||||||||| |||||||| ||||||||| |||| | ||||| |
Sbjct: 358 acggcgtgttccacaccgcctcccccgtcaccgacgaccctgagcagatggtggagccgg 417
Query: 451 cgatccggggcacgcgctacgtgatggcggcggcggacgacgccgga---gtgaagcgcg 507
|| | |||||||| |||||||| | ||||||| |||||||| ||| || |
Sbjct: 418 cggtgaggggcacggaatacgtgatcgacgcggcggcggacgccggcaccgtgcgccggg 477
Query: 508 tcgtgttcacgtcctccatcggcaccgt 535
| ||||||||||| ||||||||| ||||
Sbjct: 478 ttgtgttcacgtcgtccatcggcgccgt 505
>gb|BI959031.1|BI959031 HVSMEn0017M21f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0017M21f, mRNA sequence
Length = 646
Score = 71.9 bits (36), Expect = 6e-011
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 580 cctgctggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
||||||||||||||||||||| |||||||| ||| ||||||||||||||||
Sbjct: 394 cctgctggagcgacctcgagttctgcaagaagaccaagaactggtactgcta 445
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 382 ccggctgtgacggcgtcttccacgccgcctccccggtcaccga 424
||||||| |||||||||||||| |||| || |||||||||||
Sbjct: 193 ccggctgccacggcgtcttccacaccgcgtcgccggtcaccga 235
Score = 38.2 bits (19), Expect = 0.80
Identities = 46/55 (83%)
Strand = Plus / Plus
Query: 220 tcgtcaagcgcctcctggagaagggctacacagtccgcggcacggtcaggaaccc 274
||||||||| |||||| || ||||| ||| | || || ||||| |||||||||||
Sbjct: 31 tcgtcaagctcctcctcgacaaggggtacgccgtgcgaggcaccgtcaggaaccc 85
>gb|BI960699.1|BI960699 HVSMEn0025O19f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025O19f, mRNA sequence
Length = 661
Score = 71.9 bits (36), Expect = 6e-011
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 580 cctgctggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
||||||||||||||||||||| |||||||| ||| ||||||||||||||||
Sbjct: 498 cctgctggagcgacctcgagttctgcaagaagaccaagaactggtactgcta 549
Score = 48.1 bits (24), Expect = 8e-004
Identities = 84/104 (80%)
Strand = Plus / Plus
Query: 171 gggcggacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgc 230
|||| |||||| ||||||||||| || || || | ||| | || ||||||||||||| |
Sbjct: 86 gggcagacggtgtgcgtgaccggcgccggcggctacatcgggtcgtggctcgtcaagctc 145
Query: 231 ctcctggagaagggctacacagtccgcggcacggtcaggaaccc 274
||||| || ||||| ||| | || || ||||| |||||||||||
Sbjct: 146 ctcctcgacaaggggtacgccgtgcgaggcaccgtcaggaaccc 189
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 382 ccggctgtgacggcgtcttccacgccgcctccccggtcaccga 424
||||||| |||||||||||||| |||| || |||||||||||
Sbjct: 297 ccggctgccacggcgtcttccacaccgcgtcgccggtcaccga 339
>gb|BJ450530.1|BJ450530 BJ450530 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak30a24 5', mRNA sequence
Length = 439
Score = 71.9 bits (36), Expect = 6e-011
Identities = 129/161 (80%)
Strand = Plus / Plus
Query: 801 aacgcggcgcaggcgtacgtgcacgtcagggacgtggccgaggcgcacgtccgggtgtac 860
||||||| |||||||| |||| |||| | ||||| | || |||||| ||||||| | |
Sbjct: 66 aacgcggtgcaggcgtncgtggacgtgcgcgacgtcgncggcgcgcacctccgggtcttc 125
Query: 861 gaggcgccccacgcgcacggccgctacatctgcgccgagagcaccctgcaccgcggcgac 920
||||||||||| || |||||||||| ||||||||||| || |||||||||| |||
Sbjct: 126 gaggcgccccaggcctccggccgctacctctgcgccgagcgcgtcctgcaccgccaggac 185
Query: 921 ctctgccgcgtcctcgccaagctcttcccggagtaccccgt 961
|| || | | ||||||||||||||||| ||||||| |||
Sbjct: 186 gtcgtccacattctcgccaagctcttccccgagtaccncgt 226
>gb|BI956546.1|BI956546 HVSMEn0004B08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004B08f, mRNA sequence
Length = 793
Score = 69.9 bits (35), Expect = 2e-010
Identities = 77/91 (84%)
Strand = Plus / Plus
Query: 382 ccggctgtgacggcgtcttccacgccgcctccccggtcaccgatgaccctgagatgatga 441
||||||| |||||||||||||| ||||||| ||||||||||| ||||| ||| ||||
Sbjct: 295 ccggctgccacggcgtcttccacaccgcctcgccggtcaccgacgacccggaggagatgg 354
Query: 442 tcgagccagcgatccggggcacgcgctacgt 472
| ||||| ||| | ||||||||||||||||
Sbjct: 355 tggagccggcggtgaggggcacgcgctacgt 385
Score = 58.0 bits (29), Expect = 9e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgctacgccaagacggtg 644
||||||||||| | || |||||||| ||| ||||||||| |||||||| |||||||||
Sbjct: 502 tggagcgacctagggttctgcaagaagaccgagaactggtgctgctacgggaagacggtg 561
Query: 645 gcgga 649
|||||
Sbjct: 562 gcgga 566
Score = 40.1 bits (20), Expect = 0.20
Identities = 80/100 (80%)
Strand = Plus / Plus
Query: 171 gggcggacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgc 230
|||| |||||| ||||||||||| || || || | ||| | || ||| ||||||||| |
Sbjct: 82 gggcagacggtgtgcgtgaccggcgccggcggctacatcgggtcgtggatcgtcaagctc 141
Query: 231 ctcctggagaagggctacacagtccgcggcacggtcagga 270
|| ||||||||||| ||| | || || ||||| |||||||
Sbjct: 142 ctgctggagaaggggtacgccgtgcgaggcaccgtcagga 181
>gb|BG343487.1|BG343487 HVSMEg0005O08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005O08f, mRNA sequence
Length = 949
Score = 67.9 bits (34), Expect = 9e-010
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 630 tacgccaagacggtggcggagcagggcgcgtgggaggtggcgcggaagcgagggctggac 689
||||||||||||||||||||| ||| |||||| | ||||| | ||| |||||||||
Sbjct: 501 tacgccaagacggtggcggagaaggaggcgtggcggctggcgacggagcacgggctggac 560
Query: 690 ctggtggtggtgaacccg 707
||||||||||||||||||
Sbjct: 561 ctggtggtggtgaacccg 578
>gb|BG366287.1|BG366287 HVSMEi0006J10f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0006J10f, mRNA sequence
Length = 713
Score = 63.9 bits (32), Expect = 1e-008
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 176 gacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
|||||| ||||||||||| || || |||||| | |||||||||||||||||||| |||||
Sbjct: 59 gacggtgtgcgtgaccggcgccggcgggttcgtcgcctcctggctcgtcaagcggctcct 118
>gb|BI960557.1|BI960557 HVSMEn0025A09f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025A09f, mRNA sequence
Length = 669
Score = 61.9 bits (31), Expect = 6e-008
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 580 cctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctacgccaaga 639
||||||||||||| || |||| |||||||| ||| |||||||||||||||||| |||
Sbjct: 552 cctgctggagcgatcttgagttctgcaagaaaaccaagaactggtactgctacggcaaag 611
Query: 640 cggtggc 646
|||||||
Sbjct: 612 cggtggc 618
Score = 48.1 bits (24), Expect = 8e-004
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 163 ccgggcaagggcggacggtttgcgtgaccggagctggagggttcattgcctcctggctcg 222
||||||| |||| ||| || ||||| ||||| || | |||| ||| || || |||||||
Sbjct: 132 ccgggcacgggcagaccgtgtgcgtcaccggcgccgccgggtacatcgcgtcgtggctcg 191
Query: 223 tcaagcgcctcctggagaagggctacac 250
|||||| |||||||||| |||||||||
Sbjct: 192 tcaagctgctcctggagaggggctacac 219
Score = 44.1 bits (22), Expect = 0.013
Identities = 117/148 (79%), Gaps = 3/148 (2%)
Strand = Plus / Plus
Query: 391 acggcgtcttccacgccgcctccccggtcaccgatgaccctgagatgatgatcgagccag 450
||||||| |||||| |||||||||| |||||||| ||||||||| |||| | ||||| |
Sbjct: 360 acggcgtgttccacaccgcctcccccgtcaccgacgaccctgagcagatggtggagccgg 419
Query: 451 cgatccggggcacgcgctacgtgatggcggcggcggacgacgccgga---gtgaagcgcg 507
|| | |||||||| |||||||| | ||||||| |||||||| ||| || |
Sbjct: 420 cggtgaggggcacggaatacgtgatcgacgcggcggcggacgccggcaccgtgcgccggg 479
Query: 508 tcgtgttcacgtcctccatcggcaccgt 535
| ||||||||||| ||||||||| ||||
Sbjct: 480 ttgtgttcacgtcgtccatcggcgccgt 507
>gb|BF263684.3|BF263684 HV_CEa0007G07f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0007G07f, mRNA sequence
Length = 437
Score = 61.9 bits (31), Expect = 6e-008
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 382 ccggctgtgacggcgtcttccacgccgcctccccggtcaccgatgaccctgagatgatga 441
||||||| ||||||| |||||| ||||||| ||||||||||| ||||| ||| ||||
Sbjct: 272 ccggctgccacggcgtattccacaccgcctcgccggtcaccgacgacccggaggagatgg 331
Query: 442 tcgagccagcgatccggggcacgcgctacgt 472
| ||||| ||| | ||||||||||||||||
Sbjct: 332 tggagccggcggtgaggggcacgcgctacgt 362
Score = 46.1 bits (23), Expect = 0.003
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 220 tcgtcaagcgcctcctggagaagggctacacagtccgcggcacggtcaggaaccc 274
||||||||| ||| ||||||||||| ||| | || || ||||| |||||||||||
Sbjct: 110 tcgtcaagctcctgctggagaaggggtacgccgtgcgaggcaccgtcaggaaccc 164
>gb|BQ763022.1|BQ763022 EBro02_SQ006_M20_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ006_M20 5', mRNA sequence
Length = 626
Score = 61.9 bits (31), Expect = 6e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
|||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 577 tggagcgacctcgagttctgcaagaacacaaagaactggtactgcta 623
Score = 58.0 bits (29), Expect = 9e-007
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 216 tggctcgtcaagcgcctcctggagaagggctacacagtccgcggcacggtcaggaaccct 275
||||| ||||||| ||||||||||||||||||| | |||| |||||| ||| |||| |||
Sbjct: 201 tggctggtcaagctcctcctggagaagggctacgccgtccacggcaccgtccggaatcct 260
Query: 276 g 276
|
Sbjct: 261 g 261
>gb|BG344412.1|BG344412 HVSMEg0009D04f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0009D04f, mRNA sequence
Length = 850
Score = 60.0 bits (30), Expect = 2e-007
Identities = 84/102 (82%)
Strand = Plus / Minus
Query: 860 cgaggcgccccacgcgcacggccgctacatctgcgccgagagcaccctgcaccgcggcga 919
|||||||||||| || |||||||||| | ||||||||| || |||||||||| ||
Sbjct: 484 cgaggcgccccaggcctccggccgctacctttgcgccgagcgcgtcctgcaccgccagga 425
Query: 920 cctctgccgcgtcctcgccaagctcttcccggagtaccccgt 961
| || || | ||||||||||||||||||| |||||||||||
Sbjct: 424 cgtcgtccacatcctcgccaagctcttccccgagtaccccgt 383
>gb|BF254781.2|BF254781 HVSMEf0005A11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0005A11f, mRNA sequence
Length = 586
Score = 58.0 bits (29), Expect = 9e-007
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 861 gaggcgccccacgcgcacggccgctacatctgcgccgagagcaccctgcaccgcggcgac 920
||||||||||| || |||||||||| | ||||||||| || |||||||||| |||
Sbjct: 472 gaggcgccccaggcctccggccgctacctatgcgccgagcgcgtcctgcaccgccaggac 413
Query: 921 ctctgccgcgtcctcgccaagctcttcccggagtaccccgt 961
|| || | ||||||||||||||||||| |||||||||||
Sbjct: 412 gtcgtccacatcctcgccaagctcttccccgagtaccccgt 372
>gb|BG418436.1|BG418436 HVSMEk0022L05f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0022L05f, mRNA sequence
Length = 804
Score = 58.0 bits (29), Expect = 9e-007
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 834 gtggccgaggcgcacgtccgggtgtacgaggcg 866
|||||||||||||||||||||| ||||||||||
Sbjct: 178 gtggccgaggcgcacgtccgggcgtacgaggcg 210
>gb|BM442873.2|BM442873 EBro02_SQ001_K13_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ001_K13 5', mRNA sequence
Length = 480
Score = 58.0 bits (29), Expect = 9e-007
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 216 tggctcgtcaagcgcctcctggagaagggctacacagtccgcggcacggtcaggaaccct 275
||||| ||||||| ||||||||||||||||||| | |||| |||||| ||| |||| |||
Sbjct: 205 tggctggtcaagctcctcctggagaagggctacgccgtccacggcaccgtccggaatcct 264
Query: 276 g 276
|
Sbjct: 265 g 265
>gb|BM443024.2|BM443024 EBro02_SQ002_D15_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ002_D15 5', mRNA sequence
Length = 276
Score = 58.0 bits (29), Expect = 9e-007
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 216 tggctcgtcaagcgcctcctggagaagggctacacagtccgcggcacggtcaggaaccct 275
||||| ||||||| ||||||||||||||||||| | |||| |||||| ||| |||| |||
Sbjct: 190 tggctggtcaagctcctcctggagaagggctacgccgtccacggcaccgtccggaatcct 249
Query: 276 g 276
|
Sbjct: 250 g 250
>gb|BI777845.2|BI777845 EBro08_SQ002_E16_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ002_E16 5', mRNA sequence
Length = 601
Score = 58.0 bits (29), Expect = 9e-007
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 216 tggctcgtcaagcgcctcctggagaagggctacacagtccgcggcacggtcaggaaccct 275
||||| ||||||| ||||||||||||||||||| | |||| |||||| ||| |||| |||
Sbjct: 185 tggctggtcaagctcctcctggagaagggctacgccgtccacggcaccgtccggaatcct 244
Query: 276 g 276
|
Sbjct: 245 g 245
Score = 38.2 bits (19), Expect = 0.80
Identities = 38/43 (88%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 585 tggagcgacctcgagtattgcaagaacacccagaactggtact 627
|||||||||||||||| |||||| |||| ||||||||||||
Sbjct: 560 tggagcgacctcgagttctgcaag-acacaaagaactggtact 601
>gb|BQ763026.1|BQ763026 EBro02_SQ006_N19_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ006_N19 5', mRNA sequence
Length = 546
Score = 58.0 bits (29), Expect = 9e-007
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 216 tggctcgtcaagcgcctcctggagaagggctacacagtccgcggcacggtcaggaaccct 275
||||| ||||||| ||||||||||||||||||| | |||| |||||| ||| |||| |||
Sbjct: 201 tggctggtcaagctcctcctggagaagggctacgccgtccacggcaccgtccggaatcct 260
Query: 276 g 276
|
Sbjct: 261 g 261
>gb|BI958105.1|BI958105 HVSMEn0013G15f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0013G15f, mRNA sequence
Length = 655
Score = 56.0 bits (28), Expect = 3e-006
Identities = 70/84 (83%)
Strand = Plus / Plus
Query: 580 cctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctacgccaaga 639
||||||||||||| || |||| |||||||| ||| | ||||||||||| |||| |||
Sbjct: 549 cctgctggagcgatcttgagttctgcaagaaaaccaaaaactggtactgttacgggaagg 608
Query: 640 cggtggcggagcagggcgcgtggg 663
|||||||||| |||| ||| ||||
Sbjct: 609 cggtggcggaccaggccgcttggg 632
Score = 48.1 bits (24), Expect = 8e-004
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 163 ccgggcaagggcggacggtttgcgtgaccggagctggagggttcattgcctcctggctcg 222
||||||| |||| ||| || ||||| ||||| || | |||| ||| || || |||||||
Sbjct: 129 ccgggcacgggcagaccgtgtgcgtcaccggcgccgccgggtacatcgcgtcgtggctcg 188
Query: 223 tcaagcgcctcctggagaagggctacac 250
|||||| |||||||||| |||||||||
Sbjct: 189 tcaagctgctcctggagaggggctacac 216
>gb|BQ763369.1|BQ763369 EBro02_SQ008_J04_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_J04 5', mRNA sequence
Length = 598
Score = 56.0 bits (28), Expect = 3e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 580 cctgctggagcgacctcgagtattgcaagaacacccagaactggtactgcta 631
||||||||||||| || |||| |||||||| ||| ||||||||||||||||
Sbjct: 547 cctgctggagcgatcttgagttctgcaagaaaaccaagaactggtactgcta 598
Score = 48.1 bits (24), Expect = 8e-004
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 163 ccgggcaagggcggacggtttgcgtgaccggagctggagggttcattgcctcctggctcg 222
||||||| |||| ||| || ||||| ||||| || | |||| ||| || || |||||||
Sbjct: 126 ccgggcacgggcagaccgtgtgcgtcaccggcgccgccgggtacatcgcgtcgtggctcg 185
Query: 223 tcaagcgcctcctggagaagggctacac 250
|||||| |||||||||| |||||||||
Sbjct: 186 tcaagctgctcctggagaggggctacac 213
Score = 36.2 bits (18), Expect = 3.2
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 510 gtgttcacgtcctccatcggcaccgt 535
||||||||||| ||||||||| ||||
Sbjct: 477 gtgttcacgtcgtccatcggcgccgt 502
>gb|BJ457952.1|BJ457952 BJ457952 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak30a24 3', mRNA sequence
Length = 362
Score = 54.0 bits (27), Expect = 1e-005
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 931 tcctcgccaagctcttcccggagtaccccgt 961
||||||||||||||||||| |||||||||||
Sbjct: 331 tcctcgccaagctcttccccgagtaccccgt 301
>gb|AV928908.1|AV928908 AV928908 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd20c11 3', mRNA sequence
Length = 521
Score = 52.0 bits (26), Expect = 5e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 1004 atacaagttcaccaaccagaggctcaaggatctggggatggacttc 1049
||||| |||| ||||||||||||||| ||| |||||| ||||||||
Sbjct: 409 atacaggttctccaaccagaggctcagggacctggggttggacttc 364
>gb|AV929667.1|AV929667 AV929667 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd16b10 3', mRNA sequence
Length = 682
Score = 52.0 bits (26), Expect = 5e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 1004 atacaagttcaccaaccagaggctcaaggatctggggatggacttc 1049
||||| |||| ||||||||||||||| ||| |||||| ||||||||
Sbjct: 400 atacaggttctccaaccagaggctcagggacctggggttggacttc 355
>gb|AV930574.1|AV930574 AV930574 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd24c05 3', mRNA sequence
Length = 699
Score = 52.0 bits (26), Expect = 5e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 1004 atacaagttcaccaaccagaggctcaaggatctggggatggacttc 1049
||||| |||| ||||||||||||||| ||| |||||| ||||||||
Sbjct: 409 atacaggttctccaaccagaggctcagggacctggggttggacttc 364
>gb|AV931426.1|AV931426 AV931426 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd19l24 3', mRNA sequence
Length = 655
Score = 52.0 bits (26), Expect = 5e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 1004 atacaagttcaccaaccagaggctcaaggatctggggatggacttc 1049
||||| |||| ||||||||||||||| ||| |||||| ||||||||
Sbjct: 408 atacaggttctccaaccagaggctcagggacctggggttggacttc 363
>gb|AL506722.1|AL506722 AL506722 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04A23T 5',
mRNA sequence
Length = 619
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||||||||| || ||||| ||| | ||||| ||||||||||||| ||||||
Sbjct: 20 tgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcct 72
>gb|BE602876.2|BE602876 HVSMEh0100H17f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0100H17f, mRNA sequence
Length = 505
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||||||||| || ||||| ||| | ||||| ||||||||||||| ||||||
Sbjct: 25 tgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcct 77
>gb|BE215014.1|BE215014 HV_CEb0005I17f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0005I17f, mRNA sequence
Length = 622
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||||||||| || ||||| ||| | ||||| ||||||||||||| ||||||
Sbjct: 87 tgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcct 139
>gb|BE559021.2|BE559021 HV_CEb0022F12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022F12f, mRNA sequence
Length = 697
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||||||||| || ||||| ||| | ||||| ||||||||||||| ||||||
Sbjct: 82 tgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcct 134
>gb|AV914608.1|AV914608 AV914608 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags7d04 5', mRNA sequence
Length = 514
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||||||||| || ||||| ||| | ||||| ||||||||||||| ||||||
Sbjct: 47 tgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcct 99
>gb|AV915311.1|AV915311 AV915311 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags13n08 5', mRNA sequence
Length = 578
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||||||||| || ||||| ||| | ||||| ||||||||||||| ||||||
Sbjct: 56 tgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcct 108
>gb|BJ463463.1|BJ463463 BJ463463 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32a03 5', mRNA sequence
Length = 662
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||||||||| || ||||| ||| | ||||| ||||||||||||| ||||||
Sbjct: 55 tgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcct 107
>gb|BJ464137.1|BJ464137 BJ464137 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33a09 5', mRNA sequence
Length = 663
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||||||||| || ||||| ||| | ||||| ||||||||||||| ||||||
Sbjct: 73 tgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcct 125
>gb|BU985911.1|BU985911 HF08P24r HF Hordeum vulgare subsp. vulgare cDNA clone HF08P24
5-PRIME, mRNA sequence
Length = 401
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
|||||||| || || ||||| ||||| ||||| ||||||||||||| ||||||
Sbjct: 68 tgcgtgactggcgcaggaggcttcatcgcctcgtggctcgtcaagctcctcct 120
>gb|CA007645.1|CA007645 HU08J12r HU Hordeum vulgare subsp. vulgare cDNA clone HU08J12
5-PRIME, mRNA sequence
Length = 511
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||||||||| || ||||| ||| | ||||| ||||||||||||| ||||||
Sbjct: 22 tgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcct 74
>gb|CA011608.1|CA011608 HT03A12r HT Hordeum vulgare subsp. vulgare cDNA clone HT03A12
5-PRIME, mRNA sequence
Length = 371
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||||||||| || ||||| ||| | ||||| ||||||||||||| ||||||
Sbjct: 31 tgcgtgaccggcgcaggaggcttcgtcgcctcatggctcgtcaagctcctcct 83
>gb|CA031581.1|CA031581 HX10G17r HX Hordeum vulgare subsp. vulgare cDNA clone HX10G17
5-PRIME, mRNA sequence
Length = 622
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
|||||||| || || ||||| ||||| ||||| ||||||||||||| ||||||
Sbjct: 157 tgcgtgactggcgcaggaggcttcatcgcctcgtggctcgtcaagctcctcct 209
>gb|CA032017.1|CA032017 HX11M09r HX Hordeum vulgare subsp. vulgare cDNA clone HX11M09
5-PRIME, mRNA sequence
Length = 647
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
|||||||| || || ||||| ||||| ||||| ||||||||||||| ||||||
Sbjct: 158 tgcgtgactggcgcaggaggcttcatcgcctcgtggctcgtcaagctcctcct 210
>gb|BG301229.1|BG301229 HVSMEb0020B01f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0020B01f, mRNA sequence
Length = 893
Score = 48.1 bits (24), Expect = 8e-004
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 163 ccgggcaagggcggacggtttgcgtgaccggagctggagggttcattgcctcctggctcg 222
||||||| |||| ||| || ||||| ||||| || | |||| ||| || || |||||||
Sbjct: 126 ccgggcacgggcagaccgtgtgcgtcaccggcgccgccgggtacatcgcgtcgtggctcg 185
Query: 223 tcaagcgcctcctggagaagggctacac 250
|||||| |||||||||| |||||||||
Sbjct: 186 tcaagctgctcctggagaggggctacac 213
Score = 46.1 bits (23), Expect = 0.003
Identities = 59/67 (88%), Gaps = 3/67 (4%)
Strand = Plus / Plus
Query: 685 tggacctggtggtggtgaacccggtgctggtgct-gggcccgctgctgcagccgacggtg 743
||||||||||| |||| || || ||||||||| | ||||||| ||||||| |||||||||
Sbjct: 650 tggacctggtg-tggttaaacccgtgctggtggtcgggcccg-tgctgcatccgacggtg 707
Query: 744 aacgcca 750
|||||||
Sbjct: 708 aacgcca 714
Score = 44.1 bits (22), Expect = 0.013
Identities = 117/148 (79%), Gaps = 3/148 (2%)
Strand = Plus / Plus
Query: 391 acggcgtcttccacgccgcctccccggtcaccgatgaccctgagatgatgatcgagccag 450
||||||| |||||| |||||||||| |||||||| ||||||||| |||| | ||||| |
Sbjct: 354 acggcgtgttccacaccgcctcccccgtcaccgacgaccctgagcagatggtggagccgg 413
Query: 451 cgatccggggcacgcgctacgtgatggcggcggcggacgacgccgga---gtgaagcgcg 507
|| | |||||||| |||||||| | ||||||| |||||||| ||| || |
Sbjct: 414 cggtgaggggcacggaatacgtgatcgacgcggcggcggacgccggcaccgtgcgccggg 473
Query: 508 tcgtgttcacgtcctccatcggcaccgt 535
| ||||||||||| ||||||||| ||||
Sbjct: 474 ttgtgttcacgtcgtccatcggcgccgt 501
Score = 42.1 bits (21), Expect = 0.051
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 580 cctgctggagcgacctcgagtattgcaagaacacccagaactggtactgctac 632
||||||||||||| || || | ||||||| ||| |||||||||||||||||
Sbjct: 546 cctgctggagcgatcttgaattctgcaagattaccaagaactggtactgctac 598
>gb|BI957985.1|BI957985 HVSMEn0012J23f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0012J23f, mRNA sequence
Length = 464
Score = 48.1 bits (24), Expect = 8e-004
Identities = 84/104 (80%)
Strand = Plus / Plus
Query: 171 gggcggacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgc 230
|||| |||||| ||||||||||| || || || | ||| | || ||||||||||||| |
Sbjct: 79 gggcagacggtgtgcgtgaccggcgccggcggctacatcgggtcgtggctcgtcaagctc 138
Query: 231 ctcctggagaagggctacacagtccgcggcacggtcaggaaccc 274
||||| || ||||| ||| | || || ||||| |||||||||||
Sbjct: 139 ctcctcgacaaggggtacgccgtgcgaggcaccgtcaggaaccc 182
>gb|BI957975.1|BI957975 HVSMEn0012L23f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0012L23f, mRNA sequence
Length = 455
Score = 48.1 bits (24), Expect = 8e-004
Identities = 84/104 (80%)
Strand = Plus / Plus
Query: 171 gggcggacggtttgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgc 230
|||| |||||| ||||||||||| || || || | ||| | || ||||||||||||| |
Sbjct: 79 gggcagacggtgtgcgtgaccggcgccggcggctacatcgggtcgtggctcgtcaagctc 138
Query: 231 ctcctggagaagggctacacagtccgcggcacggtcaggaaccc 274
||||| || ||||| ||| | || || ||||| |||||||||||
Sbjct: 139 ctcctcgacaaggggtacgccgtgcgaggcaccgtcaggaaccc 182
Score = 46.1 bits (23), Expect = 0.003
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 382 ccggctgtgacggcgtcttccacgccgcctccccggtcaccga 424
||||||| |||||||||||||| |||| || |||||||||||
Sbjct: 290 ccggctgccacggcgtcttccacaccgcgtcgccggtcaccga 332
>gb|BI958862.1|BI958862 HVSMEn0016O20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016O20f, mRNA sequence
Length = 670
Score = 48.1 bits (24), Expect = 8e-004
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 163 ccgggcaagggcggacggtttgcgtgaccggagctggagggttcattgcctcctggctcg 222
||||||| |||| ||| || ||||| ||||| || | |||| ||| || || |||||||
Sbjct: 133 ccgggcacgggcagaccgtgtgcgtcaccggcgccgccgggtacatcgcgtcgtggctcg 192
Query: 223 tcaagcgcctcctggagaagggctacac 250
|||||| |||||||||| |||||||||
Sbjct: 193 tcaagctgctcctggagaggggctacac 220
Score = 44.1 bits (22), Expect = 0.013
Identities = 117/148 (79%), Gaps = 3/148 (2%)
Strand = Plus / Plus
Query: 391 acggcgtcttccacgccgcctccccggtcaccgatgaccctgagatgatgatcgagccag 450
||||||| |||||| |||||||||| |||||||| ||||||||| |||| | ||||| |
Sbjct: 361 acggcgtgttccacaccgcctcccccgtcaccgacgaccctgagcagatggtggagccgg 420
Query: 451 cgatccggggcacgcgctacgtgatggcggcggcggacgacgccgga---gtgaagcgcg 507
|| | |||||||| |||||||| | ||||||| |||||||| ||| || |
Sbjct: 421 cggtgaggggcacggaatacgtgatcgacgcggcggcggacgccggcaccgtgcgccggg 480
Query: 508 tcgtgttcacgtcctccatcggcaccgt 535
| ||||||||||| ||||||||| ||||
Sbjct: 481 ttgtgttcacgtcgtccatcggcgccgt 508
>gb|BQ467242.1|BQ467242 HS03C04r HS Hordeum vulgare subsp. vulgare cDNA clone HS03C04
5-PRIME, mRNA sequence
Length = 561
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 375 gccttctccggctgtgacggcgtcttccacgccgcctccccggt 418
||||||| |||||| ||||||||||||||| |||||| |||||
Sbjct: 360 gccttctgcggctgccacggcgtcttccacgtcgcctcgccggt 403
Score = 42.1 bits (21), Expect = 0.051
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 489 gacgccggagtgaagcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccc 548
|||||||| ||| |||||| ||||||||||| ||| |||| ||||| ||||| |||||
Sbjct: 471 gacgccggcgtgcggcgcgtggtgttcacgtcgtcctacggcgccgtgcacatggacccc 530
Query: 549 taccg 553
||||
Sbjct: 531 aaccg 535
>gb|CA001675.1|CA001675 HS05E05r HS Hordeum vulgare subsp. vulgare cDNA clone HS05E05
5-PRIME, mRNA sequence
Length = 496
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 375 gccttctccggctgtgacggcgtcttccacgccgcctccccggt 418
||||||| |||||| ||||||||||||||| |||||| |||||
Sbjct: 353 gccttctgcggctgccacggcgtcttccacgtcgcctcgccggt 396
>gb|CA014495.1|CA014495 HT11I05r HT Hordeum vulgare subsp. vulgare cDNA clone HT11I05
5-PRIME, mRNA sequence
Length = 654
Score = 48.1 bits (24), Expect = 8e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 375 gccttctccggctgtgacggcgtcttccacgccgcctccccggt 418
||||||| |||||| ||||||||||||||| |||||| |||||
Sbjct: 363 gccttctgcggctgccacggcgtcttccacgtcgcctcgccggt 406
Score = 42.1 bits (21), Expect = 0.051
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 489 gacgccggagtgaagcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccc 548
|||||||| ||| |||||| ||||||||||| ||| |||| ||||| ||||| |||||
Sbjct: 474 gacgccggcgtgcggcgcgtggtgttcacgtcgtcctacggcgccgtgcacatggacccc 533
Query: 549 taccg 553
||||
Sbjct: 534 aaccg 538
>gb|BI959591.1|BI959591 HVSMEn0020F03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020F03f, mRNA sequence
Length = 646
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 216 tggctcgtcaagcgcctcctggagaagggctacac 250
||||||||||||| |||||||||| |||||||||
Sbjct: 181 tggctcgtcaagctgctcctggagaggggctacac 215
>gb|AL504779.1|AL504779 AL504779 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06F22V 5', mRNA sequence
Length = 700
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||||||||||||||||| ||||||
Sbjct: 149 gcctcctggctcgtcaagctcctcct 174
>gb|BF628107.2|BF628107 HVSMEb0003C11f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0003C11f, mRNA sequence
Length = 495
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||||||||||||||||| ||||||
Sbjct: 120 gcctcctggctcgtcaagctcctcct 145
>gb|BF627941.2|BF627941 HVSMEb0006M19f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0006M19f, mRNA sequence
Length = 772
Score = 44.1 bits (22), Expect = 0.013
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagc 228
||||||||||| | || |||||||| ||||| |||||||||||||
Sbjct: 69 tgcgtgaccggcggcggcgggttcatcgcctcgtggctcgtcaagc 114
>gb|BF253936.2|BF253936 HVSMEf0002I16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002I16f, mRNA sequence
Length = 609
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||||||||||||||||| ||||||
Sbjct: 121 gcctcctggctcgtcaagctcctcct 146
>gb|BF255832.2|BF255832 HVSMEf0007P02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0007P02f, mRNA sequence
Length = 837
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||||||||||||||||| ||||||
Sbjct: 137 gcctcctggctcgtcaagctcctcct 162
>gb|AW982651.2|AW982651 HVSMEg0003N13f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003N13f, mRNA sequence
Length = 1042
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||||||||||||||||| ||||||
Sbjct: 61 gcctcctggctcgtcaagctcctcct 86
>gb|BF262808.2|BF262808 HV_CEa0005A08f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0005A08f, mRNA sequence
Length = 819
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||||||||||||||||| ||||||
Sbjct: 81 gcctcctggctcgtcaagctcctcct 106
>gb|BE196379.3|BE196379 HVSMEh0092C06f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0092C06f, mRNA sequence
Length = 941
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||||||||||||||||| ||||||
Sbjct: 173 gcctcctggctcgtcaagctcctcct 198
>gb|AV913567.1|AV913567 AV913567 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22i12 5', mRNA sequence
Length = 585
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||||||||||||||||| ||||||
Sbjct: 141 gcctcctggctcgtcaagctcctcct 166
>gb|AV926665.1|AV926665 AV926665 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23e18 5', mRNA sequence
Length = 584
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||||||||||||||||| ||||||
Sbjct: 141 gcctcctggctcgtcaagctcctcct 166
>gb|BM816674.1|BM816674 HB01C06_T3.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB01C06_T3.ab1 similar to Aldehyde reductase,Hydrogen
dehydrogenase,Alcohol dehydrogenase,Cinnamyl-alcohol
dehydrogenase,Hydrogenase,Cytochrome-c3
hydrogenase,Cinnamoyl-CoA reductase,Transferred entry:
1.18.99.1,Carbonyl reductase (NADPH),Dihydrokaempferol
4-reductase,, mRNA sequence
Length = 847
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||||||||||||||||| ||||||
Sbjct: 115 gcctcctggctcgtcaagctcctcct 140
>gb|BQ459797.1|BQ459797 HA08A23r HA Hordeum vulgare subsp. vulgare cDNA clone HA08A23
5-PRIME, mRNA sequence
Length = 497
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||||||||||||||||| ||||||
Sbjct: 159 gcctcctggctcgtcaagctcctcct 184
>gb|BQ460124.1|BQ460124 HA07C19r HA Hordeum vulgare subsp. vulgare cDNA clone HA07C19
5-PRIME, mRNA sequence
Length = 579
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||||||||||||||||| ||||||
Sbjct: 140 gcctcctggctcgtcaagctcctcct 165
>gb|BQ467571.1|BQ467571 HS04D07r HS Hordeum vulgare subsp. vulgare cDNA clone HS04D07
5-PRIME, mRNA sequence
Length = 563
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||||||||||||||||| ||||||
Sbjct: 124 gcctcctggctcgtcaagctcctcct 149
>gb|BQ470739.1|BQ470739 HX03O06r HX Hordeum vulgare subsp. vulgare cDNA clone HX03O06
5-PRIME, mRNA sequence
Length = 667
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||||||||||||||||| ||||||
Sbjct: 92 gcctcctggctcgtcaagctcctcct 117
>gb|BU973416.1|BU973416 HB24O01r BC Hordeum vulgare subsp. vulgare cDNA clone HB24O01
5-PRIME, mRNA sequence
Length = 478
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||||||||||||||||| ||||||
Sbjct: 42 gcctcctggctcgtcaagctcctcct 67
>gb|BU980158.1|BU980158 HA18N13r HA Hordeum vulgare subsp. vulgare cDNA clone HA18N13
5-PRIME, mRNA sequence
Length = 399
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||||||||||||||||| ||||||
Sbjct: 109 gcctcctggctcgtcaagctcctcct 134
>gb|BU986380.1|BU986380 HF11K09r HF Hordeum vulgare subsp. vulgare cDNA clone HF11K09
5-PRIME, mRNA sequence
Length = 571
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||||||||||||||||| ||||||
Sbjct: 134 gcctcctggctcgtcaagctcctcct 159
>gb|BU986537.1|BU986537 HF12C17r HF Hordeum vulgare subsp. vulgare cDNA clone HF12C17
5-PRIME, mRNA sequence
Length = 683
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||||||||||||||||| ||||||
Sbjct: 108 gcctcctggctcgtcaagctcctcct 133
>gb|CA002692.1|CA002692 HS08E02r HS Hordeum vulgare subsp. vulgare cDNA clone HS08E02
5-PRIME, mRNA sequence
Length = 453
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||||||||||||||||| ||||||
Sbjct: 124 gcctcctggctcgtcaagctcctcct 149
>gb|CA004617.1|CA004617 HS18C15r HS Hordeum vulgare subsp. vulgare cDNA clone HS18C15
5-PRIME, mRNA sequence
Length = 417
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||||||||||||||||| ||||||
Sbjct: 137 gcctcctggctcgtcaagctcctcct 162
>gb|CA020126.1|CA020126 HV14G15r HV Hordeum vulgare subsp. vulgare cDNA clone HV14G15
5-PRIME, mRNA sequence
Length = 568
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||||||||||||||||| ||||||
Sbjct: 154 gcctcctggctcgtcaagctcctcct 179
>gb|CA021911.1|CA021911 HZ41I09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ41I09
5-PRIME, mRNA sequence
Length = 414
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||||||||||||||||| ||||||
Sbjct: 67 gcctcctggctcgtcaagctcctcct 92
>gb|CA023175.1|CA023175 HZ45H08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ45H08
5-PRIME, mRNA sequence
Length = 412
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||||||||||||||||| ||||||
Sbjct: 152 gcctcctggctcgtcaagctcctcct 177
>gb|CK123698.1|CK123698 BES1824105b24 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B245 5-PRIME, mRNA sequence
Length = 408
Score = 44.1 bits (22), Expect = 0.013
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||||||||||||||||| ||||||
Sbjct: 151 gcctcctggctcgtcaagctcctcct 176
>gb|AL503414.1|AL503414 AL503414 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02A24T 5', mRNA sequence
Length = 700
Score = 42.1 bits (21), Expect = 0.051
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaag 227
||||| |||||||| | ||||| ||| || |||||||||||||||
Sbjct: 49 tgcgtcaccggagcggcagggtacatcgcgtcctggctcgtcaag 93
>gb|BJ468735.1|BJ468735 BJ468735 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd27a15 5', mRNA sequence
Length = 505
Score = 42.1 bits (21), Expect = 0.051
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 184 gcgtgaccggagctggagggttcattgcctcctggctcgtcaagc 228
|||||||||| | || |||||||| ||||| |||||||||||||
Sbjct: 1 gcgtgaccggcggcggcgggttcatcgcctcgtggctcgtcaagc 45
>gb|BQ464700.1|BQ464700 HU01A05T HU Hordeum vulgare subsp. vulgare cDNA clone HU01A05
5-PRIME, mRNA sequence
Length = 661
Score = 42.1 bits (21), Expect = 0.051
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 489 gacgccggagtgaagcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccc 548
|||||||| ||| |||||| ||||||||||| ||| |||| ||||| ||||| |||||
Sbjct: 515 gacgccggcgtgcggcgcgtggtgttcacgtcgtcctacggcgccgtgcacatggacccc 574
Query: 549 taccg 553
||||
Sbjct: 575 aaccg 579
>gb|BQ465481.1|BQ465481 HU03M08r HU Hordeum vulgare subsp. vulgare cDNA clone HU03M08
5-PRIME, mRNA sequence
Length = 415
Score = 42.1 bits (21), Expect = 0.051
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 489 gacgccggagtgaagcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccc 548
|||||||| ||| |||||| ||||||||||| ||| |||| ||||| ||||| |||||
Sbjct: 249 gacgccggcgtgcggcgcgtggtgttcacgtcgtcctacggcgccgtgcacatggacccc 308
Query: 549 taccg 553
||||
Sbjct: 309 aaccg 313
>gb|BM369883.2|BM369883 EBem07_SQ004_O04_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ004_O04 5', mRNA sequence
Length = 432
Score = 42.1 bits (21), Expect = 0.051
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagcgcctcct 235
||||||||||| || |||| ||| | ||||| ||||||||||||| ||||||
Sbjct: 19 tgcgtgaccggcgcaagaggcttcgtcgcctcatggctcgtcaagctcctcct 71
>gb|CA006616.1|CA006616 HU05D06r HU Hordeum vulgare subsp. vulgare cDNA clone HU05D06
5-PRIME, mRNA sequence
Length = 459
Score = 42.1 bits (21), Expect = 0.051
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 489 gacgccggagtgaagcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccc 548
|||||||| ||| |||||| ||||||||||| ||| |||| ||||| ||||| |||||
Sbjct: 249 gacgccggcgtgcggcgcgtggtgttcacgtcgtcctacggcgccgtgcacatggacccc 308
Query: 549 taccg 553
||||
Sbjct: 309 aaccg 313
>gb|CA020044.1|CA020044 HV14C19r HV Hordeum vulgare subsp. vulgare cDNA clone HV14C19
5-PRIME, mRNA sequence
Length = 585
Score = 42.1 bits (21), Expect = 0.051
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 489 gacgccggagtgaagcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccc 548
|||||||| ||| |||||| ||||||||||| ||| |||| ||||| ||||| |||||
Sbjct: 146 gacgccggcgtgcggcgcgtggtgttcacgtcgtcctacggcgccgtgcacatggacccc 205
Query: 549 taccg 553
||||
Sbjct: 206 aaccg 210
>gb|AL505150.1|AL505150 AL505150 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07I24V 5', mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 212 ctcctggctcgtcaagcgcctcct 235
||||||||||||||||| ||||||
Sbjct: 135 ctcctggctcgtcaagctcctcct 158
>gb|BE230902.1|BE230902 HVSMEg0001E18f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0001E18f, mRNA sequence
Length = 618
Score = 40.1 bits (20), Expect = 0.20
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 1061 cagtgcctctacgagacggtcaccagcctccaggagaaaggcat 1104
|||||||||||||| || ||| |||| |||||||||| |||||
Sbjct: 312 cagtgcctctacgacaccgtcgtcagcttccaggagaagggcat 355
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 810 caggcgtacgtgcacgtc 827
||||||||||||||||||
Sbjct: 54 caggcgtacgtgcacgtc 71
>gb|BF259786.2|BF259786 HVSMEf0020E05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020E05f, mRNA sequence
Length = 534
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 212 ctcctggctcgtcaagcgcctcct 235
||||||||||||||||| ||||||
Sbjct: 150 ctcctggctcgtcaagctcctcct 173
>gb|BG365391.1|BG365391 HVSMEi0002I06f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0002I06f, mRNA sequence
Length = 757
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 201 gggttcattgcctcctggctcgtcaagc 228
|||||||| ||||| |||||||||||||
Sbjct: 100 gggttcatcgcctcgtggctcgtcaagc 127
>gb|BE196376.3|BE196376 HVSMEh0092C03f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0092C03f, mRNA sequence
Length = 975
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 201 gggttcattgcctcctggctcgtcaagc 228
|||||||| ||||| |||||||||||||
Sbjct: 100 gggttcatcgcctcgtggctcgtcaagc 127
>gb|BI777336.2|BI777336 EBro03_SQ002_O21_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ002_O21 5', mRNA sequence
Length = 274
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 834 gtggccgaggcgcacgtccgggtgtacgaggc 865
||||| ||||||||||| || |||||||||||
Sbjct: 31 gtggcggaggcgcacgtgcgcgtgtacgaggc 62
>gb|CB883517.1|CB883517 HQ02H24w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ02H24
3-PRIME, mRNA sequence
Length = 615
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 883 gctacatctgcgccgagagc 902
||||||||||||||||||||
Sbjct: 264 gctacatctgcgccgagagc 283
>gb|BF626636.3|BF626636 HVSMEa0018P10f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018P10f, mRNA sequence
Length = 753
Score = 38.2 bits (19), Expect = 0.80
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 393 ggcgtcttccacgccgcctccccggtc 419
||||| ||||||| |||||||||||||
Sbjct: 158 ggcgtgttccacgtcgcctccccggtc 184
>gb|BF258617.2|BF258617 HVSMEf0016D02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0016D02f, mRNA sequence
Length = 600
Score = 38.2 bits (19), Expect = 0.80
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagc 228
|||||||||||||||||||
Sbjct: 107 gcctcctggctcgtcaagc 125
>gb|BF265911.2|BF265911 HV_CEa0013K14f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013K14f, mRNA sequence
Length = 768
Score = 38.2 bits (19), Expect = 0.80
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 914 cggcgacctctgccgcgtcctcg 936
|||||||||| ||||||||||||
Sbjct: 503 cggcgacctcggccgcgtcctcg 525
>gb|CA015399.1|CA015399 HT14D04r HT Hordeum vulgare subsp. vulgare cDNA clone HT14D04
5-PRIME, mRNA sequence
Length = 576
Score = 38.2 bits (19), Expect = 0.80
Identities = 43/51 (84%)
Strand = Plus / Plus
Query: 503 gcgcgtcgtgttcacgtcctccatcggcaccgtgtacatgaacccctaccg 553
|||||| ||||||||||| ||| |||| ||||| ||||| ||||| ||||
Sbjct: 488 gcgcgtggtgttcacgtcgtcctacggcgccgtgcacatggaccccaaccg 538
>gb|AL505660.1|AL505660 AL505660 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09C07V 5', mRNA sequence
Length = 469
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 930 gtcctcgccaagctcttc 947
||||||||||||||||||
Sbjct: 153 gtcctcgccaagctcttc 170
>gb|AL506776.1|AL506776 AL506776 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04D12T 5',
mRNA sequence
Length = 700
Score = 36.2 bits (18), Expect = 3.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 680 agggctggacctggtggtggtg 701
||||||||| ||||||||||||
Sbjct: 233 agggctggatctggtggtggtg 254
>gb|AL507329.1|AL507329 AL507329 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01P01V 5',
mRNA sequence
Length = 298
Score = 36.2 bits (18), Expect = 3.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 680 agggctggacctggtggtggtg 701
||||||||| ||||||||||||
Sbjct: 124 agggctggatctggtggtggtg 145
>gb|BF624632.2|BF624632 HVSMEa0017F04f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0017F04f, mRNA sequence
Length = 853
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 967 ccaagtgcaaggaccagg 984
||||||||||||||||||
Sbjct: 561 ccaagtgcaaggaccagg 578
>gb|BG343171.1|BG343171 HVSMEg0002P22f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0002P22f, mRNA sequence
Length = 782
Score = 36.2 bits (18), Expect = 3.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 501 aagcgcgtcgtgttcacgtcct 522
|||||||||| |||||||||||
Sbjct: 731 aagcgcgtcgcgttcacgtcct 752
>gb|BE602666.2|BE602666 HVSMEh0101A14f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0101A14f, mRNA sequence
Length = 756
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1005 tacaagttcaccaaccag 1022
||||||||||||||||||
Sbjct: 602 tacaagttcaccaaccag 619
>gb|BI960427.1|BI960427 HVSMEn0024I24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024I24f, mRNA sequence
Length = 648
Score = 36.2 bits (18), Expect = 3.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 680 agggctggacctggtggtggtg 701
||||||||| ||||||||||||
Sbjct: 237 agggctggatctggtggtggtg 258
>gb|BF255504.3|BF255504 HVSMEf0007A15f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0007A15f, mRNA sequence
Length = 876
Score = 36.2 bits (18), Expect = 3.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 680 agggctggacctggtggtggtg 701
||||||||||||||||| ||||
Sbjct: 201 agggctggacctggtggcggtg 222
>gb|BG344198.2|BG344198 HVSMEg0008B03f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0008B03f, mRNA sequence
Length = 823
Score = 36.2 bits (18), Expect = 3.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 680 agggctggacctggtggtggtg 701
||||||||| ||||||||||||
Sbjct: 251 agggctggatctggtggtggtg 272
>gb|AV913390.1|AV913390 AV913390 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21o04 5', mRNA sequence
Length = 518
Score = 36.2 bits (18), Expect = 3.2
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||| ||||||||||||| ||||||
Sbjct: 23 gcctcatggctcgtcaagctcctcct 48
>gb|AV913397.1|AV913397 AV913397 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21o15 5', mRNA sequence
Length = 521
Score = 36.2 bits (18), Expect = 3.2
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||| ||||||||||||| ||||||
Sbjct: 22 gcctcatggctcgtcaagctcctcct 47
>gb|BM444301.1|BM444301 EBem09_SQ004_M03_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_M03 5', mRNA sequence
Length = 498
Score = 36.2 bits (18), Expect = 3.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 680 agggctggacctggtggtggtg 701
||||||||| ||||||||||||
Sbjct: 227 agggctggatctggtggtggtg 248
>gb|BQ463622.1|BQ463622 HI05O21r HI Hordeum vulgare subsp. vulgare cDNA clone HI05O21
5-PRIME, mRNA sequence
Length = 609
Score = 36.2 bits (18), Expect = 3.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 680 agggctggacctggtggtggtg 701
||||||||| ||||||||||||
Sbjct: 243 agggctggatctggtggtggtg 264
>gb|BQ464838.1|BQ464838 HU01M14T HU Hordeum vulgare subsp. vulgare cDNA clone HU01M14
5-PRIME, mRNA sequence
Length = 561
Score = 36.2 bits (18), Expect = 3.2
Identities = 45/54 (83%)
Strand = Plus / Plus
Query: 489 gacgccggagtgaagcgcgtcgtgttcacgtcctccatcggcaccgtgtacatg 542
|||||||| ||| |||||| ||||||||||| ||| |||| ||||| |||||
Sbjct: 505 gacgccggcgtgcggcgcgtggtgttcacgtcgtcctacggcgccgtgcacatg 558
>gb|BQ467416.1|BQ467416 HS03K24r HS Hordeum vulgare subsp. vulgare cDNA clone HS03K24
5-PRIME, mRNA sequence
Length = 341
Score = 36.2 bits (18), Expect = 3.2
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 383 cggctgtgacggcgtcttccacgccg 408
|||||| |||| ||||||||||||||
Sbjct: 290 cggctgcgacgccgtcttccacgccg 315
>gb|BQ470323.1|BQ470323 HX02I16r HX Hordeum vulgare subsp. vulgare cDNA clone HX02I16
5-PRIME, mRNA sequence
Length = 529
Score = 36.2 bits (18), Expect = 3.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 680 agggctggacctggtggtggtg 701
||||||||| ||||||||||||
Sbjct: 257 agggctggatctggtggtggtg 278
>gb|BQ470745.1|BQ470745 HX03O12r HX Hordeum vulgare subsp. vulgare cDNA clone HX03O12
5-PRIME, mRNA sequence
Length = 374
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 700 tgaacccggtgctggtgc 717
||||||||||||||||||
Sbjct: 33 tgaacccggtgctggtgc 16
>gb|BM442520.2|BM442520 EBan01_SQ003_G14_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_G14 5', mRNA sequence
Length = 341
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 391 acggcgtcttccacgccg 408
||||||||||||||||||
Sbjct: 237 acggcgtcttccacgccg 254
>gb|BM097245.2|BM097245 EBpi07_SQ002_N20_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ002_N20 5', mRNA sequence
Length = 529
Score = 36.2 bits (18), Expect = 3.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 680 agggctggacctggtggtggtg 701
||||||||||||||||| ||||
Sbjct: 208 agggctggacctggtggcggtg 229
>gb|BQ764611.1|BQ764611 EBca01_SQ004_K07_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ004_K07 5', mRNA sequence
Length = 554
Score = 36.2 bits (18), Expect = 3.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 680 agggctggacctggtggtggtg 701
||||||||| ||||||||||||
Sbjct: 237 agggctggatctggtggtggtg 258
>gb|BU998533.1|BU998533 HI11F21r HI Hordeum vulgare subsp. vulgare cDNA clone HI11F21
5-PRIME, mRNA sequence
Length = 603
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 415 cggtcaccgatgaccctg 432
||||||||||||||||||
Sbjct: 124 cggtcaccgatgaccctg 141
>gb|CA013420.1|CA013420 HT08G10r HT Hordeum vulgare subsp. vulgare cDNA clone HT08G10
5-PRIME, mRNA sequence
Length = 535
Score = 36.2 bits (18), Expect = 3.2
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 382 ccggctgtgacggcgtcttccacgccgcct 411
||||||| |||| ||||||||||| |||||
Sbjct: 126 ccggctgcgacgtcgtcttccacgtcgcct 155
>gb|CA019777.1|CA019777 HV13C06r HV Hordeum vulgare subsp. vulgare cDNA clone HV13C06
5-PRIME, mRNA sequence
Length = 495
Score = 36.2 bits (18), Expect = 3.2
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 382 ccggctgtgacggcgtcttccacgccgcct 411
||||||| |||| ||||||||||| |||||
Sbjct: 260 ccggctgcgacgtcgtcttccacgtcgcct 289
Score = 36.2 bits (18), Expect = 3.2
Identities = 39/46 (84%)
Strand = Plus / Plus
Query: 183 tgcgtgaccggagctggagggttcattgcctcctggctcgtcaagc 228
||||||||||| || || || ||| | ||||| |||||||||||||
Sbjct: 46 tgcgtgaccggcgccggcggcttcgtggcctcgtggctcgtcaagc 91
>gb|CA023055.1|CA023055 HZ45B18r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ45B18
5-PRIME, mRNA sequence
Length = 499
Score = 36.2 bits (18), Expect = 3.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 680 agggctggacctggtggtggtg 701
||||||||| ||||||||||||
Sbjct: 259 agggctggatctggtggtggtg 280
>gb|CA023572.1|CA023572 HZ46L02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46L02
5-PRIME, mRNA sequence
Length = 421
Score = 36.2 bits (18), Expect = 3.2
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 210 gcctcctggctcgtcaagcgcctcct 235
||||| ||||||||||||| ||||||
Sbjct: 14 gcctcatggctcgtcaagctcctcct 39
>gb|CA025277.1|CA025277 HZ51K21r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51K21
5-PRIME, mRNA sequence
Length = 613
Score = 36.2 bits (18), Expect = 3.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 680 agggctggacctggtggtggtg 701
||||||||| ||||||||||||
Sbjct: 217 agggctggatctggtggtggtg 238
>gb|CB860035.1|CB860035 HI12G16w HI Hordeum vulgare subsp. vulgare cDNA clone HI12G16
3-PRIME, mRNA sequence
Length = 633
Score = 36.2 bits (18), Expect = 3.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 680 agggctggacctggtggtggtg 701
||||||||| ||||||||||||
Sbjct: 313 agggctggatctggtggtggtg 334
>gb|L44107.1|BLYFX Hordeum vulgare (clone CDO475) chromosome 4H STS mRNA, sequence
tagged site
Length = 310
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 327 ctcgtcctcctccgcgcc 344
||||||||||||||||||
Sbjct: 301 ctcgtcctcctccgcgcc 284
Database: Hordeum_nucl_with_EST.fasta
Posted date: May 2, 2006 2:38 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 231,318
Number of Sequences: 312970
Number of extensions: 231318
Number of successful extensions: 64017
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63673
Number of HSP's gapped (non-prelim): 315
length of query: 1466
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1447
effective length of database: 169,188,109
effective search space: 244815193723
effective search space used: 244815193723
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)