BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AB021176.2.1
(1318 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM370613.2|BM370613 EBro08_SQ004_L22_R root, 3 week, dro... 246 2e-063
gb|BF253765.2|BF253765 HVSMEf0002B02f Hordeum vulgare seedl... 92 6e-017
gb|CA018793.1|CA018793 HV09K18r HV Hordeum vulgare subsp. v... 82 5e-014
gb|BM370277.2|BM370277 EBro08_SQ003_L08_R root, 3 week, dro... 80 2e-013
gb|BF258050.2|BF258050 HVSMEf0014J23f Hordeum vulgare seedl... 64 1e-008
gb|CB882390.1|CB882390 HL01L20w HL Hordeum vulgare subsp. v... 60 2e-007
gb|CA016225.1|CA016225 HV09K18u HV Hordeum vulgare subsp. v... 58 8e-007
gb|CA016489.1|CA016489 HV08K17u HV Hordeum vulgare subsp. v... 58 8e-007
gb|BF266741.2|BF266741 HV_CEa0015O24f Hordeum vulgare seedl... 44 0.012
gb|BM370698.1|BM370698 EBro04_SQ001_N20_R root, 3 week, sal... 42 0.046
gb|BJ449332.1|BJ449332 BJ449332 K. Sato unpublished cDNA li... 42 0.046
gb|BJ456796.1|BJ456796 BJ456796 K. Sato unpublished cDNA li... 42 0.046
gb|CB880133.1|CB880133 HM05J14w HM Hordeum vulgare subsp. v... 42 0.046
gb|CD663452.1|CD663452 UCRHV18_05cb06_b1 Drought-stressed D... 42 0.046
gb|BE420553.1|BE420553 HWM000.B02 ITEC HWM Barley Leaf Libr... 40 0.18
gb|AV834178.1|AV834178 AV834178 K. Sato unpublished cDNA li... 40 0.18
gb|BF625822.2|BF625822 HVSMEa0013L15f Hordeum vulgare seedl... 40 0.18
gb|BJ446966.1|BJ446966 BJ446966 K. Sato unpublished cDNA li... 40 0.18
gb|BJ447610.1|BJ447610 BJ447610 K. Sato unpublished cDNA li... 40 0.18
gb|BJ454965.1|BJ454965 BJ454965 K. Sato unpublished cDNA li... 40 0.18
gb|BJ454969.1|BJ454969 BJ454969 K. Sato unpublished cDNA li... 40 0.18
gb|BJ455365.1|BJ455365 BJ455365 K. Sato unpublished cDNA li... 40 0.18
gb|BJ465795.1|BJ465795 BJ465795 K. Sato unpublished cDNA li... 40 0.18
gb|BQ656546.1|BQ656546 HA04B19u HA Hordeum vulgare subsp. v... 40 0.18
gb|BQ656761.1|BQ656761 HA02E05u HA Hordeum vulgare subsp. v... 40 0.18
gb|BQ658255.1|BQ658255 HB09O11w BC Hordeum vulgare subsp. v... 40 0.18
gb|BQ664278.1|BQ664278 HV02K14u HV Hordeum vulgare subsp. v... 40 0.18
gb|BM101083.2|BM101083 EBpi01_SQ002_N05_R pistil, 1 DPA, no... 40 0.18
gb|BU994003.1|BU994003 HM05F13r HM Hordeum vulgare subsp. v... 40 0.18
gb|CA020161.1|CA020161 HV14I07r HV Hordeum vulgare subsp. v... 40 0.18
gb|CA022052.1|CA022052 HZ42A10r HZ Hordeum vulgare subsp. v... 40 0.18
gb|CA029128.1|CA029128 HZ64E16r HZ Hordeum vulgare subsp. v... 40 0.18
>gb|BM370613.2|BM370613 EBro08_SQ004_L22_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ004_L22 5', mRNA sequence
Length = 538
Score = 246 bits (124), Expect = 2e-063
Identities = 274/324 (84%)
Strand = Plus / Plus
Query: 687 gctgtccgtcacccgcaccagcgcggccaacggcgtgctcgtctcgctcgacggcaggtt 746
|||||| ||||||||||||| ||||||||||||||||| ||| | | ||| | | |||
Sbjct: 36 gctgtctgtcacccgcaccaaggcggccaacggcgtgctggtcgccgttgacagaaagtt 95
Query: 747 caccatcagggccaacgccgtgcccatcacagaggaggagtccagggtgcaccggtacgg 806
|| ||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||
Sbjct: 96 cagcatcagggccaacgccgtgcccatcaccgaggaggaatcgagggtgcaccgctacgg 155
Query: 807 cgtcacggccgacgactgcctcgcgcaccttgacctggccttcaagttcggcgcgctcac 866
|||||| | ||| |||||||| |||||||| || |||||||||||||| |||||||||
Sbjct: 156 cgtcactgacgatgactgcctagcgcacctcgagctggccttcaagtttaacgcgctcac 215
Query: 867 cgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtcaaccggttcga 926
|| |||||| ||||| |||||||| ||||| |||||||||||||||||||||| || ||
Sbjct: 216 cgacgacgtccacggtgtggtcggacagacctaccgctccgactacgtcaaccattttga 275
Query: 927 tgtcaaggcctcaatgcccaccatgggaggggacagcaactacaccacgtccagcctctt 986
|| | |||||| |||||||||||||| || || || || |||||| |||||| | ||
Sbjct: 276 cgtgagggcctccatgcccaccatgggtggagatgccaccttcaccacctccagcatttt 335
Query: 987 cgccgctgactgcgccgtggcgcg 1010
|||||| |||||| |||||||||
Sbjct: 336 cgccgcggactgcagcgtggcgcg 359
>gb|BF253765.2|BF253765 HVSMEf0002B02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002B02f, mRNA sequence
Length = 875
Score = 91.7 bits (46), Expect = 6e-017
Identities = 97/114 (85%)
Strand = Plus / Plus
Query: 366 cgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgggacgc 425
||||||||||||| | ||||||||||||||| ||| ||||||||||| |||||||
Sbjct: 377 cgacccgcgcttcgtgggcggcgacggcaacaagttcctgttccacggccggagggacgc 436
Query: 426 cgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcgg 479
|||||||||| ||||||||||| | |||| ||||| ||||||||||| |||||
Sbjct: 437 cgacttctgcctgctctccgacgccaacctgcacataaacgcgcactttatcgg 490
>gb|CA018793.1|CA018793 HV09K18r HV Hordeum vulgare subsp. vulgare cDNA clone HV09K18
5-PRIME, mRNA sequence
Length = 647
Score = 81.8 bits (41), Expect = 5e-014
Identities = 106/125 (84%), Gaps = 2/125 (1%)
Strand = Plus / Plus
Query: 361 tgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgccgg 420
||||| ||||| ||||||| ||||| |||||||||| |||||||||||||||| |
Sbjct: 372 tgcggtgacccccgcttcaccggcgccgacggcaacaacttctacttccacggcaagaag 431
Query: 421 gacgccga-cttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcgg 479
||| | || ||||||||| |||||||| |||||||||||||||||| |||||||||||
Sbjct: 432 gac-cagagcttctgcgtcgtctccgacaccgacctccacatcaacgcccacttcatcgg 490
Query: 480 caagc 484
|||||
Sbjct: 491 caagc 495
>gb|BM370277.2|BM370277 EBro08_SQ003_L08_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ003_L08 5', mRNA sequence
Length = 568
Score = 79.8 bits (40), Expect = 2e-013
Identities = 103/124 (83%)
Strand = Plus / Plus
Query: 359 cgtgcggcgacccgcgcttcatcggcggcgacggcaacgccttctacttccacggccgcc 418
||||||| ||||| ||||||| |||||| ||||||||| |||||||||||||||||
Sbjct: 360 cgtgcggggaccctcgcttcaccggcggggacggcaacaccttctacttccacggcaaga 419
Query: 419 gggacgccgacttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcg 478
|||| ||||||||| | |||||||| | ||||||||||||||| ||||||||||
Sbjct: 420 aggaccaggacttctgcatcgtctccgacgaggccctccacatcaacgcccacttcatcg 479
Query: 479 gcaa 482
||||
Sbjct: 480 gcaa 483
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 510 cttcacgtggatccaggccatcg 532
|||||||||||||||||||||||
Sbjct: 508 cttcacgtggatccaggccatcg 530
>gb|BF258050.2|BF258050 HVSMEf0014J23f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0014J23f, mRNA sequence
Length = 574
Score = 63.9 bits (32), Expect = 1e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 429 cttctgcgtgctctccgaccgcgacctccacatcaacgcgcacttcatcggcaagc 484
||||||||| |||||||| |||||||||||| ||||| ||||||||||||||||
Sbjct: 418 cttctgcgtcgtctccgacaccgacctccacattaacgcccacttcatcggcaagc 473
>gb|CB882390.1|CB882390 HL01L20w HL Hordeum vulgare subsp. vulgare cDNA clone HL01L20
3-PRIME, mRNA sequence
Length = 562
Score = 60.0 bits (30), Expect = 2e-007
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 451 gacctccacatcaacgcgcacttcatcggcaagc 484
||||||||||||||||| ||||||||||||||||
Sbjct: 18 gacctccacatcaacgctcacttcatcggcaagc 51
Score = 48.1 bits (24), Expect = 7e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 887 tcggccagacgtaccgctccgactacgtcaac 918
|||||||||| |||||||| ||||||||||||
Sbjct: 451 tcggccagacctaccgctctgactacgtcaac 482
>gb|CA016225.1|CA016225 HV09K18u HV Hordeum vulgare subsp. vulgare cDNA clone HV09K18
3-PRIME, mRNA sequence
Length = 553
Score = 58.0 bits (29), Expect = 8e-007
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 862 ctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtcaac 918
||||||| |||||| ||||||||| ||||||| || |||||| | ||||||||||||
Sbjct: 414 ctcaccgacgacgtccacggcgtgctcggccaaacctaccgcacggactacgtcaac 358
>gb|CA016489.1|CA016489 HV08K17u HV Hordeum vulgare subsp. vulgare cDNA clone HV08K17
3-PRIME, mRNA sequence
Length = 555
Score = 58.0 bits (29), Expect = 8e-007
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 862 ctcaccgccgacgtgcacggcgtggtcggccagacgtaccgctccgactacgtcaac 918
||||||| |||||| ||||||||| ||||||| || |||||| | ||||||||||||
Sbjct: 414 ctcaccgacgacgtccacggcgtgctcggccaaacctaccgcacggactacgtcaac 358
>gb|BF266741.2|BF266741 HV_CEa0015O24f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0015O24f, mRNA sequence
Length = 523
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaagc 211
||||||||||||||||||||||
Sbjct: 354 aaggagaaggagaaggagaagc 375
>gb|BM370698.1|BM370698 EBro04_SQ001_N20_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_N20 5', mRNA sequence
Length = 367
Score = 42.1 bits (21), Expect = 0.046
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 192 ggagaaggagaaggagaagcc 212
|||||||||||||||||||||
Sbjct: 139 ggagaaggagaaggagaagcc 159
>gb|BJ449332.1|BJ449332 BJ449332 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak23i01 5', mRNA sequence
Length = 443
Score = 42.1 bits (21), Expect = 0.046
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 99 aaggagaaggagaaggagaag 119
>gb|BJ456796.1|BJ456796 BJ456796 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak23i01 3', mRNA sequence
Length = 436
Score = 42.1 bits (21), Expect = 0.046
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 315 aaggagaaggagaaggagaag 295
>gb|CB880133.1|CB880133 HM05J14w HM Hordeum vulgare subsp. vulgare cDNA clone HM05J14
3-PRIME, mRNA sequence
Length = 542
Score = 42.1 bits (21), Expect = 0.046
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 38 aaggagaaggagaaggagaag 18
>gb|CD663452.1|CD663452 UCRHV18_05cb06_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_05cb06, mRNA sequence
Length = 495
Score = 42.1 bits (21), Expect = 0.046
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 308 aaggagaaggagaaggagaag 328
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 aggagaaggagaaggagaag 210
||||||||||||||||||||
Sbjct: 303 aggagaaggagaaggagaag 322
>gb|BE420553.1|BE420553 HWM000.B02 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM000.B02, mRNA sequence
Length = 1220
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 188 acaaggagaaggagaaggagaagc 211
|||||||||| |||||||||||||
Sbjct: 524 acaaggagaatgagaaggagaagc 547
>gb|AV834178.1|AV834178 AV834178 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags5p24, mRNA sequence
Length = 439
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 188 acaaggagaaggagaaggagaagc 211
|||||||||| |||||||||||||
Sbjct: 416 acaaggagaatgagaaggagaagc 393
>gb|BF625822.2|BF625822 HVSMEa0013L15f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0013L15f, mRNA sequence
Length = 478
Score = 40.1 bits (20), Expect = 0.18
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 381 cggcggcgacggcaacgccttctacttc 408
||||| || |||||||||||||||||||
Sbjct: 158 cggcgacgtcggcaacgccttctacttc 185
>gb|BJ446966.1|BJ446966 BJ446966 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15i15 5', mRNA sequence
Length = 584
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 188 acaaggagaaggagaaggagaagc 211
|||||||||| |||||||||||||
Sbjct: 289 acaaggagaatgagaaggagaagc 312
>gb|BJ447610.1|BJ447610 BJ447610 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16i15 5', mRNA sequence
Length = 597
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 188 acaaggagaaggagaaggagaagc 211
|||||||||| |||||||||||||
Sbjct: 273 acaaggagaatgagaaggagaagc 296
>gb|BJ454965.1|BJ454965 BJ454965 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15i15 3', mRNA sequence
Length = 618
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 188 acaaggagaaggagaaggagaagc 211
|||||||||| |||||||||||||
Sbjct: 399 acaaggagaatgagaaggagaagc 376
>gb|BJ454969.1|BJ454969 BJ454969 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak15i21 3', mRNA sequence
Length = 253
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 188 acaaggagaaggagaaggagaagc 211
|||||||||| |||||||||||||
Sbjct: 38 acaaggagaatgagaaggagaagc 15
>gb|BJ455365.1|BJ455365 BJ455365 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak16i15 3', mRNA sequence
Length = 600
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 188 acaaggagaaggagaaggagaagc 211
|||||||||| |||||||||||||
Sbjct: 409 acaaggagaatgagaaggagaagc 386
>gb|BJ465795.1|BJ465795 BJ465795 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27f21 3', mRNA sequence
Length = 493
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 180 caagccgcacaaggagaaggagaaggagaagc 211
||||||||||||| ||||| ||||| ||||||
Sbjct: 122 caagccgcacaagaagaagaagaagaagaagc 91
>gb|BQ656546.1|BQ656546 HA04B19u HA Hordeum vulgare subsp. vulgare cDNA clone HA04B19
3-PRIME, mRNA sequence
Length = 339
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 208 aagcccaagcccatgaaggtgaag 231
||||||||||||| ||||||||||
Sbjct: 326 aagcccaagcccaagaaggtgaag 303
>gb|BQ656761.1|BQ656761 HA02E05u HA Hordeum vulgare subsp. vulgare cDNA clone HA02E05
3-PRIME, mRNA sequence
Length = 339
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 208 aagcccaagcccatgaaggtgaag 231
||||||||||||| ||||||||||
Sbjct: 326 aagcccaagcccaagaaggtgaag 303
>gb|BQ658255.1|BQ658255 HB09O11w BC Hordeum vulgare subsp. vulgare cDNA clone HB09O11
3-PRIME, mRNA sequence
Length = 618
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 208 aagcccaagcccatgaaggtgaag 231
||||||||||||| ||||||||||
Sbjct: 391 aagcccaagcccaagaaggtgaag 368
>gb|BQ664278.1|BQ664278 HV02K14u HV Hordeum vulgare subsp. vulgare cDNA clone HV02K14
3-PRIME, mRNA sequence
Length = 383
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 208 aagcccaagcccatgaaggtgaag 231
||||||||||||| ||||||||||
Sbjct: 368 aagcccaagcccaagaaggtgaag 345
>gb|BM101083.2|BM101083 EBpi01_SQ002_N05_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ002_N05 5', mRNA sequence
Length = 233
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 180 caagccgcacaaggagaaggagaaggagaagc 211
||||||||||||| ||||| ||||| ||||||
Sbjct: 131 caagccgcacaagaagaagaagaagaagaagc 162
>gb|BU994003.1|BU994003 HM05F13r HM Hordeum vulgare subsp. vulgare cDNA clone HM05F13
5-PRIME, mRNA sequence
Length = 627
Score = 40.1 bits (20), Expect = 0.18
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaa 209
||||||||||||||||||||
Sbjct: 247 aaggagaaggagaaggagaa 266
>gb|CA020161.1|CA020161 HV14I07r HV Hordeum vulgare subsp. vulgare cDNA clone HV14I07
5-PRIME, mRNA sequence
Length = 602
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 188 acaaggagaaggagaaggagaagc 211
|||||||||| |||||||||||||
Sbjct: 550 acaaggagaatgagaaggagaagc 573
>gb|CA022052.1|CA022052 HZ42A10r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42A10
5-PRIME, mRNA sequence
Length = 567
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 188 acaaggagaaggagaaggagaagc 211
|||||||||| |||||||||||||
Sbjct: 354 acaaggagaatgagaaggagaagc 331
>gb|CA029128.1|CA029128 HZ64E16r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ64E16
5-PRIME, mRNA sequence
Length = 414
Score = 40.1 bits (20), Expect = 0.18
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 188 acaaggagaaggagaaggagaagc 211
|||||||||| |||||||||||||
Sbjct: 338 acaaggagaatgagaaggagaagc 361
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 195,100
Number of Sequences: 312970
Number of extensions: 195100
Number of successful extensions: 61353
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61235
Number of HSP's gapped (non-prelim): 98
length of query: 1318
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1299
effective length of database: 169,188,109
effective search space: 219775353591
effective search space used: 219775353591
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)