BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9196052.2.1
(771 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG310215.2|BG310215 HVSMEc0016H22f Hordeum vulgare seedl... 244 4e-063
gb|CA028410.1|CA028410 HZ61O22r HZ Hordeum vulgare subsp. v... 244 4e-063
gb|AV915714.1|AV915714 AV915714 K. Sato unpublished cDNA li... 236 9e-061
gb|BJ463901.1|BJ463901 BJ463901 K. Sato unpublished cDNA li... 236 9e-061
gb|BQ463250.1|BQ463250 HI04I09r HI Hordeum vulgare subsp. v... 234 3e-060
gb|BQ753958.1|BQ753958 EBca01_SQ002_G05_R carpel, pre-anthe... 218 2e-055
gb|CA029322.1|CA029322 HZ64N20r HZ Hordeum vulgare subsp. v... 137 6e-031
gb|AV920823.1|AV920823 AV920823 K. Sato unpublished cDNA li... 78 5e-013
gb|AL503144.1|AL503144 AL503144 Hordeum vulgare Barke roots... 70 1e-010
gb|AL505896.1|AL505896 AL505896 Hordeum vulgare Barke roots... 70 1e-010
gb|BJ468069.1|BJ468069 BJ468069 K. Sato unpublished cDNA li... 66 2e-009
gb|AW982369.2|AW982369 HVSMEg0003B10f Hordeum vulgare pre-a... 62 3e-008
gb|BQ660619.1|BQ660619 HI04I09u HI Hordeum vulgare subsp. v... 40 0.11
gb|BU998255.1|BU998255 HI10H15r HI Hordeum vulgare subsp. v... 40 0.11
gb|CA026631.1|CA026631 HZ56H14r HZ Hordeum vulgare subsp. v... 40 0.11
gb|CB859445.1|CB859445 HI10H15w HI Hordeum vulgare subsp. v... 40 0.11
gb|BF256265.3|BF256265 HVSMEf0009K22f Hordeum vulgare seedl... 38 0.41
gb|BQ766206.1|BQ766206 EBro08_SQ005_G12_R root, 3 week, dro... 38 0.41
gb|CB883566.1|CB883566 HQ02K06w HQ Hordeum vulgare subsp. v... 38 0.41
gb|CB883586.1|CB883586 HQ02L06w HQ Hordeum vulgare subsp. v... 38 0.41
gb|CB883648.1|CB883648 HQ02N24w HQ Hordeum vulgare subsp. v... 38 0.41
gb|BF624345.1|BF624345 HVSMEa0014C07f Hordeum vulgare seedl... 36 1.6
gb|BF623499.2|BF623499 HVSMEa0002H05f Hordeum vulgare seedl... 36 1.6
gb|BI957309.1|BI957309 HVSMEn0008M17f Hordeum vulgare rachi... 36 1.6
gb|BG344840.2|BG344840 HVSMEg0016F20f Hordeum vulgare pre-a... 36 1.6
gb|BI776290.2|BI776290 EBem04_SQ001_G11_R embryo, 12 DPA, n... 36 1.6
gb|BI777239.2|BI777239 EBro03_SQ002_I20_R root, 3 week, wat... 36 1.6
gb|BQ768334.1|BQ768334 EBro08_SQ011_M09_R root, 3 week, dro... 36 1.6
gb|BU997708.1|BU997708 HI08M12r HI Hordeum vulgare subsp. v... 36 1.6
gb|CV060730.1|CV060730 BNEL60e3 Barley EST endosperm librar... 36 1.6
emb|X70877.1|HVMYB1 H.vulgare myb1 mRNA 36 1.6
emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H 36 1.6
gb|AL501196.1|AL501196 AL501196 Hordeum vulgare Barke roots... 34 6.5
gb|AL507797.1|AL507797 AL507797 Hordeum vulgare Barke devel... 34 6.5
gb|BF621844.2|BF621844 HVSMEa0001B11f Hordeum vulgare seedl... 34 6.5
gb|BF630687.2|BF630687 HVSMEb0013B12f Hordeum vulgare seedl... 34 6.5
gb|BG300740.1|BG300740 HVSMEb0018D11f Hordeum vulgare seedl... 34 6.5
gb|BF617022.2|BF617022 HVSMEc0014E22f Hordeum vulgare seedl... 34 6.5
gb|BF258309.2|BF258309 HVSMEf0015G04f Hordeum vulgare seedl... 34 6.5
gb|BI950336.1|BI950336 HVSMEl0020E17f Hordeum vulgare spike... 34 6.5
gb|BI953292.1|BI953292 HVSMEm0012A24f Hordeum vulgare green... 34 6.5
gb|BF266173.2|BF266173 HV_CEa0014G02f Hordeum vulgare seedl... 34 6.5
gb|BI958134.1|BI958134 HVSMEn0013J06f Hordeum vulgare rachi... 34 6.5
gb|BI958305.1|BI958305 HVSMEn0014F02f Hordeum vulgare rachi... 34 6.5
gb|BI958710.1|BI958710 HVSMEn0016E24f Hordeum vulgare rachi... 34 6.5
gb|BI958865.1|BI958865 HVSMEn0016O23f Hordeum vulgare rachi... 34 6.5
gb|BI959479.1|BI959479 HVSMEn0019N09f Hordeum vulgare rachi... 34 6.5
gb|BI959554.1|BI959554 HVSMEn0020C17f Hordeum vulgare rachi... 34 6.5
gb|BI960016.1|BI960016 HVSMEn0022N21f Hordeum vulgare rachi... 34 6.5
gb|BI960048.1|BI960048 HVSMEn0023A02f Hordeum vulgare rachi... 34 6.5
gb|BE195732.3|BE195732 HVSMEh0090E23f Hordeum vulgare 5-45 ... 34 6.5
gb|BE601574.3|BE601574 HVSMEh0098K04f Hordeum vulgare 5-45 ... 34 6.5
gb|BG416925.2|BG416925 HVSMEk0015D16f Hordeum vulgare testa... 34 6.5
gb|BM371060.1|BM371060 EBro04_SQ003_F21_R root, 3 week, sal... 34 6.5
gb|AV936096.1|AV936096 AV936096 K. Sato unpublished cDNA li... 34 6.5
gb|AJ462573.1|AJ462573 AJ462573 S00002 Hordeum vulgare subs... 34 6.5
gb|BQ465456.1|BQ465456 HU03L05r HU Hordeum vulgare subsp. v... 34 6.5
gb|BM374294.2|BM374294 EBpi03_SQ003_D16_R pistil, 4 DPA, no... 34 6.5
gb|BM370784.2|BM370784 EBro04_SQ002_D19_R root, 3 week, sal... 34 6.5
gb|BM371233.2|BM371233 EBro04_SQ003_O16_R root, 3 week, sal... 34 6.5
gb|BQ754008.1|BQ754008 EBca01_SQ002_I14_R carpel, pre-anthe... 34 6.5
gb|BQ760833.1|BQ760833 EBro03_SQ003_J18_R root, 3 week, wat... 34 6.5
gb|BQ765144.1|BQ765144 EBca01_SQ005_M21_R carpel, pre-anthe... 34 6.5
gb|CA000787.1|CA000787 HS06O07u HS Hordeum vulgare subsp. v... 34 6.5
gb|CA015194.1|CA015194 HT13J20r HT Hordeum vulgare subsp. v... 34 6.5
gb|CA023054.1|CA023054 HZ45B17r HZ Hordeum vulgare subsp. v... 34 6.5
gb|CA023059.1|CA023059 HZ45B23r HZ Hordeum vulgare subsp. v... 34 6.5
gb|CA023769.1|CA023769 HZ47F17r HZ Hordeum vulgare subsp. v... 34 6.5
gb|CA025392.1|CA025392 HZ52A13r HZ Hordeum vulgare subsp. v... 34 6.5
gb|CA026025.1|CA026025 HZ53N24r HZ Hordeum vulgare subsp. v... 34 6.5
gb|CA031679.1|CA031679 HX10N02r HX Hordeum vulgare subsp. v... 34 6.5
gb|CB875763.1|CB875763 HX09E14w HX Hordeum vulgare subsp. v... 34 6.5
gb|CB876068.1|CB876068 HX10C23w HX Hordeum vulgare subsp. v... 34 6.5
gb|CV056125.1|CV056125 BNEL14C1 Barley EST endosperm librar... 34 6.5
dbj|AB028870.1| Hordeum vulgare Hv-MMT1 mRNA for S-adenosyl... 34 6.5
>gb|BG310215.2|BG310215 HVSMEc0016H22f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016H22f, mRNA sequence
Length = 845
Score = 244 bits (123), Expect = 4e-063
Identities = 198/223 (88%)
Strand = Plus / Minus
Query: 498 agcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggccatga 557
||||||||| ||||||||||||||| || |||| ||| |||||||||||| | | |||||
Sbjct: 469 agcggaggatgctgcggatgatctctgctccggcgctattgtggtccatggtcgacatga 410
Query: 558 ggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgc 617
|||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct: 409 ggtccgacagccggtcgctgaggtcgtccacctcccggtggaggctcttgatgtagctgc 350
Query: 618 aggtctccttgagcagcttcgtcgtcgacgcctggctgccgccacggcggcgcgcgctgg 677
| |||||||||||||||||||||||||||||||||||| ||| |||||||| | | |||
Sbjct: 349 acgtctccttgagcagcttcgtcgtcgacgcctggctggagccgcggcggcgagagttgg 290
Query: 678 ggagcagcgtctgcagcctcgagataagctcgttgatctcctc 720
||||||| | ||| ||| | ||||| |||||||||||||||||
Sbjct: 289 ggagcagagactggagcttggagatgagctcgttgatctcctc 247
>gb|CA028410.1|CA028410 HZ61O22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61O22
5-PRIME, mRNA sequence
Length = 616
Score = 244 bits (123), Expect = 4e-063
Identities = 198/223 (88%)
Strand = Plus / Minus
Query: 498 agcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggccatga 557
||||||||| ||||||||||||||| || |||| ||| |||||||||||| | | |||||
Sbjct: 476 agcggaggatgctgcggatgatctctgctccggcgctattgtggtccatggtcgacatga 417
Query: 558 ggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgc 617
|||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct: 416 ggtccgacagccggtcgctgaggtcgtccacctcccggtggaggctcttgatgtagctgc 357
Query: 618 aggtctccttgagcagcttcgtcgtcgacgcctggctgccgccacggcggcgcgcgctgg 677
| |||||||||||||||||||||||||||||||||||| ||| |||||||| | | |||
Sbjct: 356 acgtctccttgagcagcttcgtcgtcgacgcctggctggagccgcggcggcgagagttgg 297
Query: 678 ggagcagcgtctgcagcctcgagataagctcgttgatctcctc 720
||||||| | ||| ||| | ||||| |||||||||||||||||
Sbjct: 296 ggagcagagactggagcttggagatgagctcgttgatctcctc 254
>gb|AV915714.1|AV915714 AV915714 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags15l14 5', mRNA sequence
Length = 603
Score = 236 bits (119), Expect = 9e-061
Identities = 197/223 (88%)
Strand = Plus / Minus
Query: 498 agcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggccatga 557
||||||||| ||||||||||||||| || |||| ||| |||||||||||| | | |||||
Sbjct: 514 agcggaggatgctgcggatgatctctgctccggcgctattgtggtccatggtcgacatga 455
Query: 558 ggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgc 617
|||| ||||| |||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct: 454 ggtctgacagccggtcgctgaggtcgtccacctcccggtggaggctcttgatgtagctgc 395
Query: 618 aggtctccttgagcagcttcgtcgtcgacgcctggctgccgccacggcggcgcgcgctgg 677
| |||||||||||||||||||||||||||||||||||| ||| |||||||| | | |||
Sbjct: 394 acgtctccttgagcagcttcgtcgtcgacgcctggctggagccgcggcggcgagagttgg 335
Query: 678 ggagcagcgtctgcagcctcgagataagctcgttgatctcctc 720
||||||| | ||| ||| | ||||| |||||||||||||||||
Sbjct: 334 ggagcagagactggagcttggagatgagctcgttgatctcctc 292
>gb|BJ463901.1|BJ463901 BJ463901 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30p15 5', mRNA sequence
Length = 578
Score = 236 bits (119), Expect = 9e-061
Identities = 197/223 (88%)
Strand = Plus / Minus
Query: 498 agcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggccatga 557
||||||||| ||||||||||||||| || |||| ||| |||||||||||| | | |||||
Sbjct: 490 agcggaggatgctgcggatgatctctgctccggcgctattgtggtccatggtcgacatga 431
Query: 558 ggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgc 617
|||| ||||| |||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct: 430 ggtctgacagccggtcgctgaggtcgtccacctcccggtggaggctcttgatgtagctgc 371
Query: 618 aggtctccttgagcagcttcgtcgtcgacgcctggctgccgccacggcggcgcgcgctgg 677
| |||||||||||||||||||||||||||||||||||| ||| |||||||| | | |||
Sbjct: 370 acgtctccttgagcagcttcgtcgtcgacgcctggctggagccgcggcggcgagagttgg 311
Query: 678 ggagcagcgtctgcagcctcgagataagctcgttgatctcctc 720
||||||| | ||| ||| | ||||| |||||||||||||||||
Sbjct: 310 ggagcagagactggagcttggagatgagctcgttgatctcctc 268
>gb|BQ463250.1|BQ463250 HI04I09r HI Hordeum vulgare subsp. vulgare cDNA clone HI04I09
5-PRIME, mRNA sequence
Length = 596
Score = 234 bits (118), Expect = 3e-060
Identities = 151/162 (93%)
Strand = Plus / Minus
Query: 495 gctagcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggcca 554
|||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| ||
Sbjct: 382 gctagcggaggaggctgcggatgatctcggcggcggggctgttgttgtccatggtggaca 323
Query: 555 tgaggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagc 614
||||||| || |||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 322 tgaggtcggagaggcggtcgctcaggtcgtccacctccctgtgcaggctcttgatgtagc 263
Query: 615 tgcaggtctccttgagcagcttcgtcgtcgacgcctggctgc 656
|||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 262 tgcacgtctccttgagcattttcgtcgtcgacgcctggctgc 221
Score = 85.7 bits (43), Expect = 2e-015
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 652 gctgccgccacggcggcgcgcgctggggagcagcgtctgcagcctcgagataagctcgtt 711
||||| ||| |||||||||| | |||||||||| ||||| ||||| ||||| ||||||||
Sbjct: 213 gctgctgccgcggcggcgcgtggtggggagcagggtctggagcctggagatgagctcgtt 154
Query: 712 gatctcctcctccga 726
|||||||||||||||
Sbjct: 153 gatctcctcctccga 139
>gb|BQ753958.1|BQ753958 EBca01_SQ002_G05_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ002_G05 5', mRNA sequence
Length = 673
Score = 218 bits (110), Expect = 2e-055
Identities = 143/154 (92%)
Strand = Plus / Minus
Query: 495 gctagcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggcca 554
|||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| ||
Sbjct: 154 gctagcggaggaggctgcggatgatctcggcggcggggctgttgttgtccatggtggaca 95
Query: 555 tgaggtccgacaggcggtcgctcagatcgtccacctcccggtgcaggctcttgatgtagc 614
||||||| || |||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 94 tgaggtcggagaggcggtcgctcaggtcgtccacctccctgtgcaggctcttgatgtagc 35
Query: 615 tgcaggtctccttgagcagcttcgtcgtcgacgc 648
|||| ||||||||||||| ||||||||||||||
Sbjct: 34 tgcacgtctccttgagcattttcgtcgtcgacgc 1
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 68 ggaaacaactcgatccagac 87
||||||||||||||||||||
Sbjct: 586 ggaaacaactcgatccagac 567
>gb|CA029322.1|CA029322 HZ64N20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ64N20
5-PRIME, mRNA sequence
Length = 365
Score = 137 bits (69), Expect = 6e-031
Identities = 108/121 (89%)
Strand = Plus / Minus
Query: 600 ggctcttgatgtagctgcaggtctccttgagcagcttcgtcgtcgacgcctggctgccgc 659
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 365 ggctcttgatgtagctgcacgtctccttgagcagcttcgtcgtcgacgcctggctggagc 306
Query: 660 cacggcggcgcgcgctggggagcagcgtctgcagcctcgagataagctcgttgatctcct 719
| |||||||| | | |||||||||| | ||| ||| | ||||| ||||||||||||||||
Sbjct: 305 cgcggcggcgagagttggggagcagagactggagcttggagatgagctcgttgatctcct 246
Query: 720 c 720
|
Sbjct: 245 c 245
>gb|AV920823.1|AV920823 AV920823 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags15l14 3', mRNA sequence
Length = 693
Score = 77.8 bits (39), Expect = 5e-013
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 498 agcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggccatga 557
||||||||| ||||||||||||||| || |||| ||| |||||||||||| | | |||||
Sbjct: 602 agcggaggatgctgcggatgatctctgctccggcgctattgtggtccatggtcgacatga 661
Query: 558 ggtccgacaggcggtcgct 576
|||| ||||| ||||||||
Sbjct: 662 ggtctgacagccggtcgct 680
>gb|AL503144.1|AL503144 AL503144 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09N12u 3', mRNA sequence
Length = 560
Score = 69.9 bits (35), Expect = 1e-010
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 572 tcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgcaggtctcct 626
|||||||| ||||||||||||||||||| |||| |||||||| |||| |||||||
Sbjct: 378 tcgctcaggtcgtccacctcccggtgcaagctcctgatgtaggtgcacgtctcct 432
>gb|AL505896.1|AL505896 AL505896 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09N12V 5', mRNA sequence
Length = 469
Score = 69.9 bits (35), Expect = 1e-010
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 572 tcgctcagatcgtccacctcccggtgcaggctcttgatgtagctgcaggtctcct 626
|||||||| ||||||||||||||||||| |||| |||||||| |||| |||||||
Sbjct: 367 tcgctcaggtcgtccacctcccggtgcaagctcctgatgtaggtgcacgtctcct 313
>gb|BJ468069.1|BJ468069 BJ468069 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30p15 3', mRNA sequence
Length = 693
Score = 65.9 bits (33), Expect = 2e-009
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 498 agcggaggaggctgcggatgatctcggcgccggggctgttgtggtccatgctggccatga 557
||||||||| ||||||||||||||| || |||| ||| |||||||||||| | | |||||
Sbjct: 625 agcggaggatgctgcggatgatctctgctccggcgctattgtggtccatggtcgacatga 684
Query: 558 ggtccgaca 566
|||| ||||
Sbjct: 685 ggtctgaca 693
>gb|AW982369.2|AW982369 HVSMEg0003B10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003B10f, mRNA sequence
Length = 563
Score = 61.9 bits (31), Expect = 3e-008
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 581 tcgtccacctcccggtgcaggctcttgatgtagctgcaggtctccttgagcagcttcgtc 640
||||| |||||| |||| |||||||||||||| | ||| |||||||| |||||||||| |
Sbjct: 504 tcgtcgacctcctggtgaaggctcttgatgtacccgcacgtctccttcagcagcttcgac 445
Query: 641 gtcgacg 647
| |||||
Sbjct: 444 gccgacg 438
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 677 gggagcagcgtctgcagcctcgagataagctcgttgatctcctc 720
|||||||| | ||| ||| | ||||| |||||||||||||||||
Sbjct: 200 gggagcagggcctgaagcttggagatgagctcgttgatctcctc 157
>gb|BQ660619.1|BQ660619 HI04I09u HI Hordeum vulgare subsp. vulgare cDNA clone HI04I09
3-PRIME, mRNA sequence
Length = 520
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 ggaaacaactcgatccagac 87
||||||||||||||||||||
Sbjct: 167 ggaaacaactcgatccagac 186
>gb|BU998255.1|BU998255 HI10H15r HI Hordeum vulgare subsp. vulgare cDNA clone HI10H15
5-PRIME, mRNA sequence
Length = 536
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 68 ggaaacaactcgatccagac 87
||||||||||||||||||||
Sbjct: 391 ggaaacaactcgatccagac 372
>gb|CA026631.1|CA026631 HZ56H14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ56H14
5-PRIME, mRNA sequence
Length = 337
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 ggaaacaactcgatccagac 87
||||||||||||||||||||
Sbjct: 159 ggaaacaactcgatccagac 178
>gb|CB859445.1|CB859445 HI10H15w HI Hordeum vulgare subsp. vulgare cDNA clone HI10H15
3-PRIME, mRNA sequence
Length = 573
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 ggaaacaactcgatccagac 87
||||||||||||||||||||
Sbjct: 147 ggaaacaactcgatccagac 166
>gb|BF256265.3|BF256265 HVSMEf0009K22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0009K22f, mRNA sequence
Length = 792
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 470 cggccggccggacggacgg 488
|||||||||||||||||||
Sbjct: 207 cggccggccggacggacgg 189
>gb|BQ766206.1|BQ766206 EBro08_SQ005_G12_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ005_G12 5', mRNA sequence
Length = 621
Score = 38.2 bits (19), Expect = 0.41
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 710 ttgatctcctcctccgagaccgt 732
|||||||||||||||||| ||||
Sbjct: 320 ttgatctcctcctccgagtccgt 298
>gb|CB883566.1|CB883566 HQ02K06w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ02K06
3-PRIME, mRNA sequence
Length = 640
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 470 cggccggccggacggacgg 488
|||||||||||||||||||
Sbjct: 404 cggccggccggacggacgg 386
>gb|CB883586.1|CB883586 HQ02L06w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ02L06
3-PRIME, mRNA sequence
Length = 602
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 470 cggccggccggacggacgg 488
|||||||||||||||||||
Sbjct: 406 cggccggccggacggacgg 388
>gb|CB883648.1|CB883648 HQ02N24w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ02N24
3-PRIME, mRNA sequence
Length = 663
Score = 38.2 bits (19), Expect = 0.41
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 470 cggccggccggacggacgg 488
|||||||||||||||||||
Sbjct: 377 cggccggccggacggacgg 359
>gb|BF624345.1|BF624345 HVSMEa0014C07f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0014C07f, mRNA sequence
Length = 502
Score = 36.2 bits (18), Expect = 1.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 473 ccggccggacggacggac 490
||||||||||||||||||
Sbjct: 51 ccggccggacggacggac 34
Score = 34.2 bits (17), Expect = 6.5
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 469 ccggccggccggacggacgga 489
|||||||| ||||||||||||
Sbjct: 51 ccggccggacggacggacgga 31
>gb|BF623499.2|BF623499 HVSMEa0002H05f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002H05f, mRNA sequence
Length = 840
Score = 36.2 bits (18), Expect = 1.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 472 gccggccggacggacgga 489
||||||||||||||||||
Sbjct: 46 gccggccggacggacgga 63
>gb|BI957309.1|BI957309 HVSMEn0008M17f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0008M17f, mRNA sequence
Length = 909
Score = 36.2 bits (18), Expect = 1.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 472 gccggccggacggacgga 489
||||||||||||||||||
Sbjct: 49 gccggccggacggacgga 66
>gb|BG344840.2|BG344840 HVSMEg0016F20f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0016F20f, mRNA sequence
Length = 632
Score = 36.2 bits (18), Expect = 1.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 472 gccggccggacggacgga 489
||||||||||||||||||
Sbjct: 77 gccggccggacggacgga 94
>gb|BI776290.2|BI776290 EBem04_SQ001_G11_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ001_G11 5', mRNA sequence
Length = 431
Score = 36.2 bits (18), Expect = 1.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 473 ccggccggacggacggac 490
||||||||||||||||||
Sbjct: 46 ccggccggacggacggac 29
Score = 34.2 bits (17), Expect = 6.5
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 469 ccggccggccggacggacgga 489
|||||||| ||||||||||||
Sbjct: 46 ccggccggacggacggacgga 26
>gb|BI777239.2|BI777239 EBro03_SQ002_I20_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ002_I20 5', mRNA sequence
Length = 238
Score = 36.2 bits (18), Expect = 1.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 467 ggccggccggccggacgg 484
||||||||||||||||||
Sbjct: 32 ggccggccggccggacgg 15
>gb|BQ768334.1|BQ768334 EBro08_SQ011_M09_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_M09 5', mRNA sequence
Length = 544
Score = 36.2 bits (18), Expect = 1.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 472 gccggccggacggacgga 489
||||||||||||||||||
Sbjct: 29 gccggccggacggacgga 46
>gb|BU997708.1|BU997708 HI08M12r HI Hordeum vulgare subsp. vulgare cDNA clone HI08M12
5-PRIME, mRNA sequence
Length = 367
Score = 36.2 bits (18), Expect = 1.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 473 ccggccggacggacggac 490
||||||||||||||||||
Sbjct: 223 ccggccggacggacggac 206
Score = 34.2 bits (17), Expect = 6.5
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 469 ccggccggccggacggacgga 489
|||||||| ||||||||||||
Sbjct: 223 ccggccggacggacggacgga 203
>gb|CV060730.1|CV060730 BNEL60e3 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL60e3 5' similar to contains EST
C27594, mRNA sequence
Length = 622
Score = 36.2 bits (18), Expect = 1.6
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 653 ctgccgccacggcggcgcgcgc 674
|||||||| |||||||||||||
Sbjct: 467 ctgccgccgcggcggcgcgcgc 488
>emb|X70877.1|HVMYB1 H.vulgare myb1 mRNA
Length = 1284
Score = 36.2 bits (18), Expect = 1.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 212 gagtggaagagagagaga 229
||||||||||||||||||
Sbjct: 119 gagtggaagagagagaga 102
>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H
Length = 59748
Score = 36.2 bits (18), Expect = 1.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 470 cggccggccggacggacg 487
||||||||||||||||||
Sbjct: 6910 cggccggccggacggacg 6927
>gb|AL501196.1|AL501196 AL501196 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03G04u 3', mRNA sequence
Length = 617
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 652 gctgccgccacggcggc 668
|||||||||||||||||
Sbjct: 191 gctgccgccacggcggc 207
>gb|AL507797.1|AL507797 AL507797 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY06O02V 5',
mRNA sequence
Length = 700
Score = 34.2 bits (17), Expect = 6.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 718 ctcctccgagaccgtcgacgc 738
||||| |||||||||||||||
Sbjct: 352 ctccttcgagaccgtcgacgc 372
>gb|BF621844.2|BF621844 HVSMEa0001B11f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0001B11f, mRNA sequence
Length = 611
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 733 cgacgcgcgggacctcc 749
|||||||||||||||||
Sbjct: 221 cgacgcgcgggacctcc 205
>gb|BF630687.2|BF630687 HVSMEb0013B12f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0013B12f, mRNA sequence
Length = 775
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 594 ggtgcaggctcttgatg 610
|||||||||||||||||
Sbjct: 325 ggtgcaggctcttgatg 309
>gb|BG300740.1|BG300740 HVSMEb0018D11f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0018D11f, mRNA sequence
Length = 608
Score = 34.2 bits (17), Expect = 6.5
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 651 ggctgccgccacggcggcgcg 671
|||| ||||||||||||||||
Sbjct: 258 ggcttccgccacggcggcgcg 238
>gb|BF617022.2|BF617022 HVSMEc0014E22f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0014E22f, mRNA sequence
Length = 758
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 640 cgtcgacgcctggctgc 656
|||||||||||||||||
Sbjct: 631 cgtcgacgcctggctgc 647
>gb|BF258309.2|BF258309 HVSMEf0015G04f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0015G04f, mRNA sequence
Length = 583
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 545 atgctggccatgaggtc 561
|||||||||||||||||
Sbjct: 166 atgctggccatgaggtc 150
>gb|BI950336.1|BI950336 HVSMEl0020E17f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0020E17f, mRNA sequence
Length = 481
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 675 tggggagcagcgtctgc 691
|||||||||||||||||
Sbjct: 248 tggggagcagcgtctgc 264
>gb|BI953292.1|BI953292 HVSMEm0012A24f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0012A24f, mRNA sequence
Length = 882
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 216 ggaagagagagagaaac 232
|||||||||||||||||
Sbjct: 476 ggaagagagagagaaac 492
>gb|BF266173.2|BF266173 HV_CEa0014G02f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0014G02f, mRNA sequence
Length = 545
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 594 ggtgcaggctcttgatg 610
|||||||||||||||||
Sbjct: 18 ggtgcaggctcttgatg 2
>gb|BI958134.1|BI958134 HVSMEn0013J06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0013J06f, mRNA sequence
Length = 906
Score = 34.2 bits (17), Expect = 6.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 718 ctcctccgagaccgtcgacgc 738
||||| |||||||||||||||
Sbjct: 258 ctccttcgagaccgtcgacgc 278
>gb|BI958305.1|BI958305 HVSMEn0014F02f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014F02f, mRNA sequence
Length = 638
Score = 34.2 bits (17), Expect = 6.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 718 ctcctccgagaccgtcgacgc 738
||||| |||||||||||||||
Sbjct: 220 ctccttcgagaccgtcgacgc 240
>gb|BI958710.1|BI958710 HVSMEn0016E24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016E24f, mRNA sequence
Length = 660
Score = 34.2 bits (17), Expect = 6.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 718 ctcctccgagaccgtcgacgc 738
||||| |||||||||||||||
Sbjct: 535 ctccttcgagaccgtcgacgc 555
>gb|BI958865.1|BI958865 HVSMEn0016O23f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016O23f, mRNA sequence
Length = 631
Score = 34.2 bits (17), Expect = 6.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 718 ctcctccgagaccgtcgacgc 738
||||| |||||||||||||||
Sbjct: 141 ctccttcgagaccgtcgacgc 161
>gb|BI959479.1|BI959479 HVSMEn0019N09f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019N09f, mRNA sequence
Length = 662
Score = 34.2 bits (17), Expect = 6.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 718 ctcctccgagaccgtcgacgc 738
||||| |||||||||||||||
Sbjct: 224 ctccttcgagaccgtcgacgc 244
>gb|BI959554.1|BI959554 HVSMEn0020C17f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020C17f, mRNA sequence
Length = 669
Score = 34.2 bits (17), Expect = 6.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 718 ctcctccgagaccgtcgacgc 738
||||| |||||||||||||||
Sbjct: 66 ctccttcgagaccgtcgacgc 86
>gb|BI960016.1|BI960016 HVSMEn0022N21f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0022N21f, mRNA sequence
Length = 658
Score = 34.2 bits (17), Expect = 6.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 718 ctcctccgagaccgtcgacgc 738
||||| |||||||||||||||
Sbjct: 129 ctccttcgagaccgtcgacgc 149
>gb|BI960048.1|BI960048 HVSMEn0023A02f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023A02f, mRNA sequence
Length = 626
Score = 34.2 bits (17), Expect = 6.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 718 ctcctccgagaccgtcgacgc 738
||||| |||||||||||||||
Sbjct: 525 ctccttcgagaccgtcgacgc 545
>gb|BE195732.3|BE195732 HVSMEh0090E23f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0090E23f, mRNA sequence
Length = 947
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 212 gagtggaagagagagag 228
|||||||||||||||||
Sbjct: 788 gagtggaagagagagag 804
>gb|BE601574.3|BE601574 HVSMEh0098K04f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0098K04f, mRNA sequence
Length = 637
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 675 tggggagcagcgtctgc 691
|||||||||||||||||
Sbjct: 206 tggggagcagcgtctgc 222
>gb|BG416925.2|BG416925 HVSMEk0015D16f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0015D16f, mRNA sequence
Length = 861
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 456 gcggcgcgcgtggccgg 472
|||||||||||||||||
Sbjct: 235 gcggcgcgcgtggccgg 251
>gb|BM371060.1|BM371060 EBro04_SQ003_F21_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_F21 5', mRNA sequence
Length = 417
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 467 ggccggccggccggacg 483
|||||||||||||||||
Sbjct: 17 ggccggccggccggacg 33
>gb|AV936096.1|AV936096 AV936096 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal10b06 3', mRNA sequence
Length = 583
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 652 gctgccgccacggcggc 668
|||||||||||||||||
Sbjct: 128 gctgccgccacggcggc 144
>gb|AJ462573.1|AJ462573 AJ462573 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200060C06F1, mRNA sequence
Length = 360
Score = 34.2 bits (17), Expect = 6.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 211 agagtggaagagagagagaaa 231
||||||| |||||||||||||
Sbjct: 268 agagtggcagagagagagaaa 288
>gb|BQ465456.1|BQ465456 HU03L05r HU Hordeum vulgare subsp. vulgare cDNA clone HU03L05
5-PRIME, mRNA sequence
Length = 690
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 456 gcggcgcgcgtggccgg 472
|||||||||||||||||
Sbjct: 35 gcggcgcgcgtggccgg 51
>gb|BM374294.2|BM374294 EBpi03_SQ003_D16_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_D16 5', mRNA sequence
Length = 566
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 652 gctgccgccacggcggc 668
|||||||||||||||||
Sbjct: 474 gctgccgccacggcggc 458
>gb|BM370784.2|BM370784 EBro04_SQ002_D19_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ002_D19 5', mRNA sequence
Length = 620
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 467 ggccggccggccggacg 483
|||||||||||||||||
Sbjct: 28 ggccggccggccggacg 44
>gb|BM371233.2|BM371233 EBro04_SQ003_O16_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_O16 5', mRNA sequence
Length = 480
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 640 cgtcgacgcctggctgc 656
|||||||||||||||||
Sbjct: 398 cgtcgacgcctggctgc 414
>gb|BQ754008.1|BQ754008 EBca01_SQ002_I14_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ002_I14 5', mRNA sequence
Length = 674
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 652 gctgccgccacggcggc 668
|||||||||||||||||
Sbjct: 602 gctgccgccacggcggc 586
>gb|BQ760833.1|BQ760833 EBro03_SQ003_J18_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_J18 5', mRNA sequence
Length = 528
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 733 cgacgcgcgggacctcc 749
|||||||||||||||||
Sbjct: 234 cgacgcgcgggacctcc 218
>gb|BQ765144.1|BQ765144 EBca01_SQ005_M21_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_M21 5', mRNA sequence
Length = 688
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 499 gcggaggaggctgcgga 515
|||||||||||||||||
Sbjct: 410 gcggaggaggctgcgga 426
>gb|CA000787.1|CA000787 HS06O07u HS Hordeum vulgare subsp. vulgare cDNA clone HS06O07
3-PRIME, mRNA sequence
Length = 533
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 675 tggggagcagcgtctgc 691
|||||||||||||||||
Sbjct: 441 tggggagcagcgtctgc 425
>gb|CA015194.1|CA015194 HT13J20r HT Hordeum vulgare subsp. vulgare cDNA clone HT13J20
5-PRIME, mRNA sequence
Length = 527
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 675 tggggagcagcgtctgc 691
|||||||||||||||||
Sbjct: 494 tggggagcagcgtctgc 510
>gb|CA023054.1|CA023054 HZ45B17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ45B17
5-PRIME, mRNA sequence
Length = 537
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 467 ggccggccggccggacg 483
|||||||||||||||||
Sbjct: 28 ggccggccggccggacg 44
>gb|CA023059.1|CA023059 HZ45B23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ45B23
5-PRIME, mRNA sequence
Length = 553
Score = 34.2 bits (17), Expect = 6.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 718 ctcctccgagaccgtcgacgc 738
||||| |||||||||||||||
Sbjct: 237 ctccttcgagaccgtcgacgc 257
>gb|CA023769.1|CA023769 HZ47F17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ47F17
5-PRIME, mRNA sequence
Length = 512
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 499 gcggaggaggctgcgga 515
|||||||||||||||||
Sbjct: 395 gcggaggaggctgcgga 411
>gb|CA025392.1|CA025392 HZ52A13r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52A13
5-PRIME, mRNA sequence
Length = 464
Score = 34.2 bits (17), Expect = 6.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 718 ctcctccgagaccgtcgacgc 738
||||| |||||||||||||||
Sbjct: 145 ctccttcgagaccgtcgacgc 165
>gb|CA026025.1|CA026025 HZ53N24r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ53N24
5-PRIME, mRNA sequence
Length = 491
Score = 34.2 bits (17), Expect = 6.5
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 718 ctcctccgagaccgtcgacgc 738
||||| |||||||||||||||
Sbjct: 145 ctccttcgagaccgtcgacgc 165
>gb|CA031679.1|CA031679 HX10N02r HX Hordeum vulgare subsp. vulgare cDNA clone HX10N02
5-PRIME, mRNA sequence
Length = 589
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 640 cgtcgacgcctggctgc 656
|||||||||||||||||
Sbjct: 549 cgtcgacgcctggctgc 565
>gb|CB875763.1|CB875763 HX09E14w HX Hordeum vulgare subsp. vulgare cDNA clone HX09E14
3-PRIME, mRNA sequence
Length = 222
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 652 gctgccgccacggcggc 668
|||||||||||||||||
Sbjct: 151 gctgccgccacggcggc 167
>gb|CB876068.1|CB876068 HX10C23w HX Hordeum vulgare subsp. vulgare cDNA clone HX10C23
3-PRIME, mRNA sequence
Length = 659
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 640 cgtcgacgcctggctgc 656
|||||||||||||||||
Sbjct: 405 cgtcgacgcctggctgc 389
>gb|CV056125.1|CV056125 BNEL14C1 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL14C1 5' similar to yippee family
protein, mRNA sequence
Length = 605
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 467 ggccggccggccggacg 483
|||||||||||||||||
Sbjct: 125 ggccggccggccggacg 109
>dbj|AB028870.1| Hordeum vulgare Hv-MMT1 mRNA for S-adenosyl-L-methionine:
L-methionine S-methyltransferase, complete cds
Length = 3543
Score = 34.2 bits (17), Expect = 6.5
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 457 cggcgcgcgtggccggc 473
|||||||||||||||||
Sbjct: 203 cggcgcgcgtggccggc 187
Database: Hordeum_nucl_with_EST.fasta
Posted date: May 2, 2006 2:38 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 126,623
Number of Sequences: 312970
Number of extensions: 126623
Number of successful extensions: 33407
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33278
Number of HSP's gapped (non-prelim): 129
length of query: 771
length of database: 175,134,539
effective HSP length: 19
effective length of query: 752
effective length of database: 169,188,109
effective search space: 127229457968
effective search space used: 127229457968
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)