BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8228841.2.1
(621 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL505468.1|AL505468 AL505468 Hordeum vulgare Barke roots... 56 1e-006
gb|BE454083.2|BE454083 HVSMEh0080E16f Hordeum vulgare 5-45 ... 46 0.001
gb|BE193330.2|BE193330 HVSMEh0080J19f Hordeum vulgare 5-45 ... 46 0.001
gb|BE601810.2|BE601810 HVSMEh0099K03f Hordeum vulgare 5-45 ... 46 0.001
gb|BE601818.2|BE601818 HVSMEh0099K11f Hordeum vulgare 5-45 ... 46 0.001
gb|BE601859.2|BE601859 HVSMEh0099M17f Hordeum vulgare 5-45 ... 46 0.001
gb|BI947748.1|BI947748 HVSMEl0006L16f Hordeum vulgare spike... 46 0.001
gb|BI949909.1|BI949909 HVSMEl0016O06f Hordeum vulgare spike... 46 0.001
gb|BI951308.1|BI951308 HVSMEl0025H09f Hordeum vulgare spike... 46 0.001
gb|BE196548.3|BE196548 HVSMEh0092J16f Hordeum vulgare 5-45 ... 46 0.001
gb|BE601804.3|BE601804 HVSMEh0099J17f Hordeum vulgare 5-45 ... 46 0.001
gb|BG418369.2|BG418369 HVSMEk0022H13f Hordeum vulgare testa... 46 0.001
gb|BJ467618.1|BJ467618 BJ467618 K. Sato unpublished cDNA li... 46 0.001
gb|BQ465020.1|BQ465020 HU02G21r HU Hordeum vulgare subsp. v... 46 0.001
gb|BQ466282.1|BQ466282 HT02B16r HT Hordeum vulgare subsp. v... 46 0.001
gb|BQ657405.1|BQ657405 HA08I10u HA Hordeum vulgare subsp. v... 46 0.001
gb|BQ659818.1|BQ659818 HF01M24w HF Hordeum vulgare subsp. v... 46 0.001
gb|BQ661086.1|BQ661086 HM01N16w HM Hordeum vulgare subsp. v... 46 0.001
gb|BQ663387.1|BQ663387 HU02G21u HU Hordeum vulgare subsp. v... 46 0.001
gb|BM441741.2|BM441741 EBed07_SQ001_G19_R endosperm, 28 DPA... 46 0.001
gb|BM441944.2|BM441944 EBed07_SQ001_P23_R endosperm, 28 DPA... 46 0.001
gb|BQ755347.1|BQ755347 EBed07_SQ002_J07_R endosperm, 28 DPA... 46 0.001
gb|BQ764256.1|BQ764256 EBan01_SQ005_G11_R anther, yellow st... 46 0.001
gb|BU976211.1|BU976211 HA03F10u HA Hordeum vulgare subsp. v... 46 0.001
gb|BU984559.1|BU984559 HF04E16r HF Hordeum vulgare subsp. v... 46 0.001
gb|BU986792.1|BU986792 HF12O16r HF Hordeum vulgare subsp. v... 46 0.001
gb|BU989213.1|BU989213 HF21B21r HF Hordeum vulgare subsp. v... 46 0.001
gb|CA010249.1|CA010249 HT11B14u HT Hordeum vulgare subsp. v... 46 0.001
gb|CV053661.1|CV053661 BNEL101g2 Barley EST endosperm libra... 46 0.001
gb|CK124362.1|CK124362 BES1824108i03 BES1824 Hordeum vulgar... 46 0.001
gb|BE420576.1|BE420576 HWM000.D01 ITEC HWM Barley Leaf Libr... 38 0.33
gb|BE195060.3|BE195060 HVSMEh0088D01f Hordeum vulgare 5-45 ... 38 0.33
gb|AV916876.1|AV916876 AV916876 K. Sato unpublished cDNA li... 38 0.33
gb|AV922174.1|AV922174 AV922174 K. Sato unpublished cDNA li... 38 0.33
gb|BJ462494.1|BJ462494 BJ462494 K. Sato unpublished cDNA li... 38 0.33
gb|BJ466112.1|BJ466112 BJ466112 K. Sato unpublished cDNA li... 38 0.33
gb|BM100134.2|BM100134 EBma01_SQ001_E17_R maternal, 4 DPA, ... 38 0.33
gb|CA028544.1|CA028544 HZ62G02r HZ Hordeum vulgare subsp. v... 38 0.33
gb|CB858437.1|CB858437 HI07A02w HI Hordeum vulgare subsp. v... 38 0.33
gb|CV054913.1|CV054913 BNEL114f9 Barley EST endosperm libra... 38 0.33
gb|CV059036.1|CV059036 BNEL43f6 Barley EST endosperm librar... 38 0.33
>gb|AL505468.1|AL505468 AL505468 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08J03V 5', mRNA sequence
Length = 545
Score = 56.0 bits (28), Expect = 1e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 234 gacgtgcgtggccacttcacctggtctctgctggacaacttcgagtggtcggccgg 289
|||||||| ||| ||||| | ||||||||||||||||||| |||||| |||||||
Sbjct: 353 gacgtgcgcggctacttcgcgtggtctctgctggacaactgggagtgggcggccgg 408
>gb|BE454083.2|BE454083 HVSMEh0080E16f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0080E16f, mRNA sequence
Length = 713
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 254 tggtctctgcttgacaacttcgagtgg 280
>gb|BE193330.2|BE193330 HVSMEh0080J19f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0080J19f, mRNA sequence
Length = 682
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 326 tggtctctgcttgacaacttcgagtgg 352
>gb|BE601810.2|BE601810 HVSMEh0099K03f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0099K03f, mRNA sequence
Length = 499
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 327 tggtctctgcttgacaacttcgagtgg 353
>gb|BE601818.2|BE601818 HVSMEh0099K11f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0099K11f, mRNA sequence
Length = 503
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 328 tggtctctgcttgacaacttcgagtgg 354
>gb|BE601859.2|BE601859 HVSMEh0099M17f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0099M17f, mRNA sequence
Length = 499
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 373 tggtctctgcttgacaacttcgagtgg 347
>gb|BI947748.1|BI947748 HVSMEl0006L16f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0006L16f, mRNA sequence
Length = 833
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 477 tggtctctgcttgacaacttcgagtgg 451
>gb|BI949909.1|BI949909 HVSMEl0016O06f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0016O06f, mRNA sequence
Length = 445
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 200 tggtctctgcttgacaacttcgagtgg 226
>gb|BI951308.1|BI951308 HVSMEl0025H09f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0025H09f, mRNA sequence
Length = 565
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 313 tggtctctgcttgacaacttcgagtgg 339
>gb|BE196548.3|BE196548 HVSMEh0092J16f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0092J16f, mRNA sequence
Length = 674
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 225 tggtctctgcttgacaacttcgagtgg 251
>gb|BE601804.3|BE601804 HVSMEh0099J17f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0099J17f, mRNA sequence
Length = 627
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 236 tggtctctgcttgacaacttcgagtgg 262
>gb|BG418369.2|BG418369 HVSMEk0022H13f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0022H13f, mRNA sequence
Length = 538
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 135 tggtctctgcttgacaacttcgagtgg 161
>gb|BJ467618.1|BJ467618 BJ467618 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29b06 3', mRNA sequence
Length = 709
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 279 tggtctctgcttgacaacttcgagtgg 253
>gb|BQ465020.1|BQ465020 HU02G21r HU Hordeum vulgare subsp. vulgare cDNA clone HU02G21
5-PRIME, mRNA sequence
Length = 569
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 135 tggtctctgcttgacaacttcgagtgg 161
>gb|BQ466282.1|BQ466282 HT02B16r HT Hordeum vulgare subsp. vulgare cDNA clone HT02B16
5-PRIME, mRNA sequence
Length = 611
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 304 tggtctctgcttgacaacttcgagtgg 330
>gb|BQ657405.1|BQ657405 HA08I10u HA Hordeum vulgare subsp. vulgare cDNA clone HA08I10
3-PRIME, mRNA sequence
Length = 599
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 419 tggtctctgcttgacaacttcgagtgg 393
>gb|BQ659818.1|BQ659818 HF01M24w HF Hordeum vulgare subsp. vulgare cDNA clone HF01M24
3-PRIME, mRNA sequence
Length = 681
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 435 tggtctctgcttgacaacttcgagtgg 409
>gb|BQ661086.1|BQ661086 HM01N16w HM Hordeum vulgare subsp. vulgare cDNA clone HM01N16
3-PRIME, mRNA sequence
Length = 580
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||| |||||||||||||||||||||
Sbjct: 352 tggtcgctgctggacaacttcgagtgg 326
>gb|BQ663387.1|BQ663387 HU02G21u HU Hordeum vulgare subsp. vulgare cDNA clone HU02G21
3-PRIME, mRNA sequence
Length = 511
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 435 tggtctctgcttgacaacttcgagtgg 409
>gb|BM441741.2|BM441741 EBed07_SQ001_G19_R endosperm, 28 DPA, no treatment, cv Optic,
EBed07 Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ001_G19 5', mRNA sequence
Length = 511
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 74 tggtctctgcttgacaacttcgagtgg 100
>gb|BM441944.2|BM441944 EBed07_SQ001_P23_R endosperm, 28 DPA, no treatment, cv Optic,
EBed07 Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ001_P23 5', mRNA sequence
Length = 449
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 17 tggtctctgcttgacaacttcgagtgg 43
>gb|BQ755347.1|BQ755347 EBed07_SQ002_J07_R endosperm, 28 DPA, no treatment, cv Optic,
EBed07 Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ002_J07 5', mRNA sequence
Length = 642
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 420 tggtctctgcttgacaacttcgagtgg 446
>gb|BQ764256.1|BQ764256 EBan01_SQ005_G11_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_G11 5', mRNA sequence
Length = 608
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||| |||||||||||||||||||||
Sbjct: 275 tggtcgctgctggacaacttcgagtgg 301
>gb|BU976211.1|BU976211 HA03F10u HA Hordeum vulgare subsp. vulgare cDNA clone HA03F10
3-PRIME, mRNA sequence
Length = 565
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 425 tggtctctgcttgacaacttcgagtgg 399
>gb|BU984559.1|BU984559 HF04E16r HF Hordeum vulgare subsp. vulgare cDNA clone HF04E16
5-PRIME, mRNA sequence
Length = 590
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 386 tggtctctgcttgacaacttcgagtgg 412
>gb|BU986792.1|BU986792 HF12O16r HF Hordeum vulgare subsp. vulgare cDNA clone HF12O16
5-PRIME, mRNA sequence
Length = 615
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 430 tggtctctgcttgacaacttcgagtgg 456
>gb|BU989213.1|BU989213 HF21B21r HF Hordeum vulgare subsp. vulgare cDNA clone HF21B21
5-PRIME, mRNA sequence
Length = 455
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 21 tggtctctgcttgacaacttcgagtgg 47
>gb|CA010249.1|CA010249 HT11B14u HT Hordeum vulgare subsp. vulgare cDNA clone HT11B14
3-PRIME, mRNA sequence
Length = 579
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 435 tggtctctgcttgacaacttcgagtgg 409
>gb|CV053661.1|CV053661 BNEL101g2 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL101g2 5' similar to
beta-glucosidase BGQ60 precursor - barley, mRNA sequence
Length = 617
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 192 tggtctctgcttgacaacttcgagtgg 218
>gb|CK124362.1|CK124362 BES1824108i03 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010I038 5-PRIME, mRNA sequence
Length = 655
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 255 tggtctctgctggacaacttcgagtgg 281
||||||||||| |||||||||||||||
Sbjct: 355 tggtctctgcttgacaacttcgagtgg 381
>gb|BE420576.1|BE420576 HWM000.D01 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM000.D01, mRNA sequence
Length = 1300
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 247 acttcacctggtctctgctggacaacttcgagtgg 281
||||| ||||||| || || |||||||||||||||
Sbjct: 84 acttcgcctggtccctcctcgacaacttcgagtgg 118
>gb|BE195060.3|BE195060 HVSMEh0088D01f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0088D01f, mRNA sequence
Length = 803
Score = 38.2 bits (19), Expect = 0.33
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 305 cggcatcgtctacgtggac 323
|||||||||||||||||||
Sbjct: 595 cggcatcgtctacgtggac 613
>gb|AV916876.1|AV916876 AV916876 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19o23 5', mRNA sequence
Length = 547
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 247 acttcacctggtctctgctggacaacttcgagtgg 281
||||| ||||||| || || |||||||||||||||
Sbjct: 118 acttcgcctggtccctcctcgacaacttcgagtgg 152
>gb|AV922174.1|AV922174 AV922174 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19o23 3', mRNA sequence
Length = 581
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 247 acttcacctggtctctgctggacaacttcgagtgg 281
||||| ||||||| || || |||||||||||||||
Sbjct: 480 acttcgcctggtccctcctcgacaacttcgagtgg 446
>gb|BJ462494.1|BJ462494 BJ462494 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28l23 5', mRNA sequence
Length = 610
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 247 acttcacctggtctctgctggacaacttcgagtgg 281
||||| ||||||| || || |||||||||||||||
Sbjct: 497 acttcgcctggtccctcctcgacaacttcgagtgg 531
>gb|BJ466112.1|BJ466112 BJ466112 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28l23 3', mRNA sequence
Length = 581
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 247 acttcacctggtctctgctggacaacttcgagtgg 281
||||| ||||||| || || |||||||||||||||
Sbjct: 553 acttcgcctggtccctcctcgacaacttcgagtgg 519
>gb|BM100134.2|BM100134 EBma01_SQ001_E17_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ001_E17 5', mRNA sequence
Length = 436
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 247 acttcacctggtctctgctggacaacttcgagtgg 281
||||| ||||||| || || |||||||||||||||
Sbjct: 122 acttcgcctggtccctcctcgacaacttcgagtgg 156
>gb|CA028544.1|CA028544 HZ62G02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ62G02
5-PRIME, mRNA sequence
Length = 552
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 247 acttcacctggtctctgctggacaacttcgagtgg 281
||||| ||||||| || || |||||||||||||||
Sbjct: 44 acttcgcctggtccctcctcgacaacttcgagtgg 78
>gb|CB858437.1|CB858437 HI07A02w HI Hordeum vulgare subsp. vulgare cDNA clone HI07A02
3-PRIME, mRNA sequence
Length = 653
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 247 acttcacctggtctctgctggacaacttcgagtgg 281
||||| ||||||| || || |||||||||||||||
Sbjct: 190 acttcgcctggtccctcctcgacaacttcgagtgg 156
>gb|CV054913.1|CV054913 BNEL114f9 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL114f9 5' similar to putative
beta-glucosidase, mRNA sequence
Length = 714
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 247 acttcacctggtctctgctggacaacttcgagtgg 281
||||| ||||||| || || |||||||||||||||
Sbjct: 154 acttcgcctggtccctcctcgacaacttcgagtgg 188
>gb|CV059036.1|CV059036 BNEL43f6 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL43f6 5' similar to putative
beta-glucosidase, mRNA sequence
Length = 506
Score = 38.2 bits (19), Expect = 0.33
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 247 acttcacctggtctctgctggacaacttcgagtgg 281
||||| ||||||| || || |||||||||||||||
Sbjct: 300 acttcgcctggtcccttctcgacaacttcgagtgg 334
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 52,068
Number of Sequences: 312970
Number of extensions: 52068
Number of successful extensions: 13467
Number of sequences better than 0.5: 43
Number of HSP's better than 0.5 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13381
Number of HSP's gapped (non-prelim): 86
length of query: 621
length of database: 175,134,539
effective HSP length: 19
effective length of query: 602
effective length of database: 169,188,109
effective search space: 101851241618
effective search space used: 101851241618
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)