BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8028975.2.1
(595 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI948071.1|BI948071 HVSMEl0008B09f Hordeum vulgare spike... 145 2e-033
gb|BF264489.1|BF264489 HV_CEa0009I24f Hordeum vulgare seedl... 145 2e-033
gb|AV915864.1|AV915864 AV915864 K. Sato unpublished cDNA li... 145 2e-033
gb|AV917857.1|AV917857 AV917857 K. Sato unpublished cDNA li... 145 2e-033
gb|AV920978.1|AV920978 AV920978 K. Sato unpublished cDNA li... 145 2e-033
gb|AV929890.1|AV929890 AV929890 K. Sato unpublished cDNA li... 145 2e-033
gb|AV931850.1|AV931850 AV931850 K. Sato unpublished cDNA li... 145 2e-033
gb|BM443194.2|BM443194 EBro02_SQ003_A04_R root, 3 week, hyd... 145 2e-033
gb|BI777295.2|BI777295 EBro03_SQ002_M10_R root, 3 week, wat... 145 2e-033
gb|BQ762284.1|BQ762284 EBro01_SQ005_I10 _R root, 3 week, hy... 145 2e-033
gb|BQ763675.1|BQ763675 EBro03_SQ005_I06_R root, 3 week, wat... 145 2e-033
gb|BJ544676.1|BJ544676 BJ544676 K. Sato unpublished cDNA li... 145 2e-033
gb|BJ546147.1|BJ546147 BJ546147 K. Sato unpublished cDNA li... 145 2e-033
gb|BJ547964.1|BJ547964 BJ547964 K. Sato unpublished cDNA li... 145 2e-033
gb|BJ549577.1|BJ549577 BJ549577 K. Sato unpublished cDNA li... 145 2e-033
gb|BJ549745.1|BJ549745 BJ549745 K. Sato unpublished cDNA li... 145 2e-033
gb|BJ550204.1|BJ550204 BJ550204 K. Sato unpublished cDNA li... 145 2e-033
gb|CD663284.1|CD663284 UCRHV18_05aa05_b1 Drought-stressed D... 145 2e-033
gb|CD663432.1|CD663432 UCRHV18_05bh06_b1 Drought-stressed D... 145 2e-033
gb|BE194414.2|BE194414 HVSMEh0085H15f Hordeum vulgare 5-45 ... 139 1e-031
gb|BF265779.2|BF265779 HV_CEa0013F02f Hordeum vulgare seedl... 139 1e-031
gb|BJ548777.1|BJ548777 BJ548777 K. Sato unpublished cDNA li... 133 7e-030
gb|AL500200.1|AL500200 AL500200 Hordeum vulgare Barke etiol... 129 1e-028
gb|AV910139.1|AV910139 AV910139 K. Sato unpublished cDNA li... 117 4e-025
gb|BI955444.1|BI955444 HVSMEm0023C11f Hordeum vulgare green... 113 7e-024
gb|BM817335.1|BM817335 HC105F07_T3.ab1 HC Hordeum vulgare s... 90 1e-016
gb|AV912721.1|AV912721 AV912721 K. Sato unpublished cDNA li... 86 2e-015
gb|BJ549352.1|BJ549352 BJ549352 K. Sato unpublished cDNA li... 80 9e-014
gb|AV910579.1|AV910579 AV910579 K. Sato unpublished cDNA li... 70 9e-011
gb|AV920459.1|AV920459 AV920459 K. Sato unpublished cDNA li... 70 9e-011
gb|AL502158.1|AL502158 AL502158 Hordeum vulgare Barke roots... 66 1e-009
gb|AL502460.1|AL502460 AL502460 Hordeum vulgare Barke roots... 64 6e-009
gb|BF264639.1|BF264639 HV_CEa0009P11f Hordeum vulgare seedl... 62 2e-008
gb|CD663623.1|CD663623 UCRHV18_06ae02_b1 Drought-stressed D... 62 2e-008
>gb|BI948071.1|BI948071 HVSMEl0008B09f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0008B09f, mRNA sequence
Length = 559
Score = 145 bits (73), Expect = 2e-033
Identities = 148/173 (85%)
Strand = Plus / Plus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
|||||||| |||||||| ||||| ||||| |||||||||||||| | ||||||||||||
Sbjct: 217 attgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgatgac 276
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||| ||| |||| |||||||| | | ||||||||||||||||||||||
Sbjct: 277 ccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaaaag 336
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
||||| ||||||| |||||||| ||||||| ||||||||||| |||||||
Sbjct: 337 gaggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaagc 389
>gb|BF264489.1|BF264489 HV_CEa0009I24f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0009I24f, mRNA sequence
Length = 887
Score = 145 bits (73), Expect = 2e-033
Identities = 148/173 (85%)
Strand = Plus / Plus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
|||||||| |||||||| ||||| ||||| |||||||||||||| | ||||||||||||
Sbjct: 332 attgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgatgac 391
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||| ||| |||| |||||||| | | ||||||||||||||||||||||
Sbjct: 392 ccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaaaag 451
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
||||| ||||||| |||||||| ||||||| ||||||||||| |||||||
Sbjct: 452 gaggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaagc 504
>gb|AV915864.1|AV915864 AV915864 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16f08 5', mRNA sequence
Length = 604
Score = 145 bits (73), Expect = 2e-033
Identities = 148/173 (85%)
Strand = Plus / Plus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
|||||||| |||||||| ||||| ||||| |||||||||||||| | ||||||||||||
Sbjct: 139 attgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgatgac 198
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||| ||| |||| |||||||| | | ||||||||||||||||||||||
Sbjct: 199 ccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaaaag 258
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
||||| ||||||| |||||||| ||||||| ||||||||||| |||||||
Sbjct: 259 gaggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaagc 311
>gb|AV917857.1|AV917857 AV917857 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags11n08 3', mRNA sequence
Length = 650
Score = 145 bits (73), Expect = 2e-033
Identities = 148/173 (85%)
Strand = Plus / Minus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
|||||||| |||||||| ||||| ||||| |||||||||||||| | ||||||||||||
Sbjct: 568 attgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgatgac 509
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||| ||| |||| |||||||| | | ||||||||||||||||||||||
Sbjct: 508 ccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaaaag 449
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
||||| ||||||| |||||||| ||||||| ||||||||||| |||||||
Sbjct: 448 gaggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaagc 396
>gb|AV920978.1|AV920978 AV920978 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16f08 3', mRNA sequence
Length = 737
Score = 145 bits (73), Expect = 2e-033
Identities = 148/173 (85%)
Strand = Plus / Minus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
|||||||| |||||||| ||||| ||||| |||||||||||||| | ||||||||||||
Sbjct: 590 attgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgatgac 531
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||| ||| |||| |||||||| | | ||||||||||||||||||||||
Sbjct: 530 ccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaaaag 471
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
||||| ||||||| |||||||| ||||||| ||||||||||| |||||||
Sbjct: 470 gaggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaagc 418
>gb|AV929890.1|AV929890 AV929890 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd16p21 3', mRNA sequence
Length = 701
Score = 145 bits (73), Expect = 2e-033
Identities = 148/173 (85%)
Strand = Plus / Minus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
|||||||| |||||||| ||||| ||||| |||||||||||||| | ||||||||||||
Sbjct: 578 attgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgatgac 519
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||| ||| |||| |||||||| | | ||||||||||||||||||||||
Sbjct: 518 ccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaaaag 459
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
||||| ||||||| |||||||| ||||||| ||||||||||| |||||||
Sbjct: 458 gaggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaagc 406
>gb|AV931850.1|AV931850 AV931850 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd26g24 3', mRNA sequence
Length = 645
Score = 145 bits (73), Expect = 2e-033
Identities = 148/173 (85%)
Strand = Plus / Minus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
|||||||| |||||||| ||||| ||||| |||||||||||||| | ||||||||||||
Sbjct: 586 attgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgatgac 527
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||| ||| |||| |||||||| | | ||||||||||||||||||||||
Sbjct: 526 ccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaaaag 467
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
||||| ||||||| |||||||| ||||||| ||||||||||| |||||||
Sbjct: 466 gaggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaagc 414
>gb|BM443194.2|BM443194 EBro02_SQ003_A04_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ003_A04 5', mRNA sequence
Length = 424
Score = 145 bits (73), Expect = 2e-033
Identities = 148/173 (85%)
Strand = Plus / Plus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
|||||||| |||||||| ||||| ||||| |||||||||||||| | ||||||||||||
Sbjct: 130 attgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgatgac 189
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||| ||| |||| |||||||| | | ||||||||||||||||||||||
Sbjct: 190 ccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaaaag 249
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
||||| ||||||| |||||||| ||||||| ||||||||||| |||||||
Sbjct: 250 gaggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaagc 302
>gb|BI777295.2|BI777295 EBro03_SQ002_M10_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ002_M10 5', mRNA sequence
Length = 390
Score = 145 bits (73), Expect = 2e-033
Identities = 148/173 (85%)
Strand = Plus / Plus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
|||||||| |||||||| ||||| ||||| |||||||||||||| | ||||||||||||
Sbjct: 81 attgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgatgac 140
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||| ||| |||| |||||||| | | ||||||||||||||||||||||
Sbjct: 141 ccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaaaag 200
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
||||| ||||||| |||||||| ||||||| ||||||||||| |||||||
Sbjct: 201 gaggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaagc 253
>gb|BQ762284.1|BQ762284 EBro01_SQ005_I10 _R root, 3 week, hydroponic grown, no treatment,
cv Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA
clone EBro01_SQ005_I10 5', mRNA sequence
Length = 589
Score = 145 bits (73), Expect = 2e-033
Identities = 148/173 (85%)
Strand = Plus / Plus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
|||||||| |||||||| ||||| ||||| |||||||||||||| | ||||||||||||
Sbjct: 216 attgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgatgac 275
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||| ||| |||| |||||||| | | ||||||||||||||||||||||
Sbjct: 276 ccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaaaag 335
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
||||| ||||||| |||||||| ||||||| ||||||||||| |||||||
Sbjct: 336 gaggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaagc 388
>gb|BQ763675.1|BQ763675 EBro03_SQ005_I06_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_I06 5', mRNA sequence
Length = 623
Score = 145 bits (73), Expect = 2e-033
Identities = 148/173 (85%)
Strand = Plus / Plus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
|||||||| |||||||| ||||| ||||| |||||||||||||| | ||||||||||||
Sbjct: 191 attgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgatgac 250
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||| ||| |||| |||||||| | | ||||||||||||||||||||||
Sbjct: 251 ccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaaaag 310
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
||||| ||||||| |||||||| ||||||| ||||||||||| |||||||
Sbjct: 311 gaggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaagc 363
>gb|BJ544676.1|BJ544676 BJ544676 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak34d02 5', mRNA sequence
Length = 698
Score = 145 bits (73), Expect = 2e-033
Identities = 148/173 (85%)
Strand = Plus / Plus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
|||||||| |||||||| ||||| ||||| |||||||||||||| | ||||||||||||
Sbjct: 178 attgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgatgac 237
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||| ||| |||| |||||||| | | ||||||||||||||||||||||
Sbjct: 238 ccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaaaag 297
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
||||| ||||||| |||||||| ||||||| ||||||||||| |||||||
Sbjct: 298 gaggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaagc 350
>gb|BJ546147.1|BJ546147 BJ546147 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak34d02 3', mRNA sequence
Length = 714
Score = 145 bits (73), Expect = 2e-033
Identities = 148/173 (85%)
Strand = Plus / Minus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
|||||||| |||||||| ||||| ||||| |||||||||||||| | ||||||||||||
Sbjct: 569 attgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgatgac 510
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||| ||| |||| |||||||| | | ||||||||||||||||||||||
Sbjct: 509 ccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaaaag 450
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
||||| ||||||| |||||||| ||||||| ||||||||||| |||||||
Sbjct: 449 gaggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaagc 397
>gb|BJ547964.1|BJ547964 BJ547964 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12k16 3', mRNA sequence
Length = 676
Score = 145 bits (73), Expect = 2e-033
Identities = 148/173 (85%)
Strand = Plus / Minus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
|||||||| |||||||| ||||| ||||| |||||||||||||| | ||||||||||||
Sbjct: 569 attgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgatgac 510
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||| ||| |||| |||||||| | | ||||||||||||||||||||||
Sbjct: 509 ccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaaaag 450
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
||||| ||||||| |||||||| ||||||| ||||||||||| |||||||
Sbjct: 449 gaggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaagc 397
>gb|BJ549577.1|BJ549577 BJ549577 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39h15 5', mRNA sequence
Length = 619
Score = 145 bits (73), Expect = 2e-033
Identities = 148/173 (85%)
Strand = Plus / Plus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
|||||||| |||||||| ||||| ||||| |||||||||||||| | ||||||||||||
Sbjct: 415 attgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgatgac 474
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||| ||| |||| |||||||| | | ||||||||||||||||||||||
Sbjct: 475 ccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaaaag 534
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
||||| ||||||| |||||||| ||||||| ||||||||||| |||||||
Sbjct: 535 gaggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaagc 587
>gb|BJ549745.1|BJ549745 BJ549745 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31d11 3', mRNA sequence
Length = 737
Score = 145 bits (73), Expect = 2e-033
Identities = 148/173 (85%)
Strand = Plus / Minus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
|||||||| |||||||| ||||| ||||| |||||||||||||| | ||||||||||||
Sbjct: 595 attgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgatgac 536
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||| ||| |||| |||||||| | | ||||||||||||||||||||||
Sbjct: 535 ccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaaaag 476
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
||||| ||||||| |||||||| ||||||| ||||||||||| |||||||
Sbjct: 475 gaggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaagc 423
>gb|BJ550204.1|BJ550204 BJ550204 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39h15 3', mRNA sequence
Length = 696
Score = 145 bits (73), Expect = 2e-033
Identities = 148/173 (85%)
Strand = Plus / Minus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
|||||||| |||||||| ||||| ||||| |||||||||||||| | ||||||||||||
Sbjct: 594 attgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgatgac 535
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||| ||| |||| |||||||| | | ||||||||||||||||||||||
Sbjct: 534 ccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaaaag 475
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
||||| ||||||| |||||||| ||||||| ||||||||||| |||||||
Sbjct: 474 gaggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaagc 422
>gb|CD663284.1|CD663284 UCRHV18_05aa05_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_05aa05, mRNA sequence
Length = 826
Score = 145 bits (73), Expect = 2e-033
Identities = 148/173 (85%)
Strand = Plus / Minus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
|||||||| |||||||| ||||| ||||| |||||||||||||| | ||||||||||||
Sbjct: 623 attgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgatgac 564
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||| ||| |||| |||||||| | | ||||||||||||||||||||||
Sbjct: 563 ccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaaaag 504
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
||||| ||||||| |||||||| ||||||| ||||||||||| |||||||
Sbjct: 503 gaggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaagc 451
>gb|CD663432.1|CD663432 UCRHV18_05bh06_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_05bh06, mRNA sequence
Length = 590
Score = 145 bits (73), Expect = 2e-033
Identities = 148/173 (85%)
Strand = Plus / Minus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
|||||||| |||||||| ||||| ||||| |||||||||||||| | ||||||||||||
Sbjct: 525 attgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgatgac 466
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||| ||| |||| |||||||| | | ||||||||||||||||||||||
Sbjct: 465 ccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaaaag 406
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
||||| ||||||| |||||||| ||||||| ||||||||||| |||||||
Sbjct: 405 gaggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaagc 353
>gb|BE194414.2|BE194414 HVSMEh0085H15f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0085H15f, mRNA sequence
Length = 864
Score = 139 bits (70), Expect = 1e-031
Identities = 139/162 (85%)
Strand = Plus / Plus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
|||||||| |||||||| ||||| ||||| |||||||||||||| | ||||||||||||
Sbjct: 351 attgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgatgac 410
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||| ||| |||| |||||||| | | ||||||||||||||||||||||
Sbjct: 411 ccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaaaag 470
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagagaa 175
||||| ||||||| |||||||| ||||||| |||||||||
Sbjct: 471 gaggcttttgaagaagctgaaaaggagaggaaagctagagaa 512
>gb|BF265779.2|BF265779 HV_CEa0013F02f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013F02f, mRNA sequence
Length = 532
Score = 139 bits (70), Expect = 1e-031
Identities = 147/173 (84%)
Strand = Plus / Plus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
|||||||| |||||||| ||||| ||||| |||||||||||||| | ||||||||||||
Sbjct: 350 attgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgatgac 409
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||| ||| |||| |||||||| | | ||||||||||||||||||||||
Sbjct: 410 ccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaaaag 469
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
|||| |||||||| ||||||| ||||||| ||||||||||| |||||||
Sbjct: 470 gagggctttgaagaagctgaanaggagaggaaagctagagaagataaggaagc 522
>gb|BJ548777.1|BJ548777 BJ548777 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal35i04 3', mRNA sequence
Length = 484
Score = 133 bits (67), Expect = 7e-030
Identities = 139/163 (85%)
Strand = Plus / Minus
Query: 24 ggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgacccagactatg 83
||||||| ||||| ||||| |||||||||||||| | |||||||||||||| || ||||
Sbjct: 484 ggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgatgacccggaatatg 425
Query: 84 caagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaaggaggcctttg 143
||| ||| |||| |||||||| | | ||||||||||||||||||||||||||| ||||
Sbjct: 424 caaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaaaaggaggcttttg 365
Query: 144 aaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
||| |||||||| ||||||| ||||||||||| |||||||
Sbjct: 364 aagaagctgaaaaggagaggaaagctagagaagataaggaagc 322
>gb|AL500200.1|AL500200 AL500200 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK05G12r 3', mRNA sequence
Length = 687
Score = 129 bits (65), Expect = 1e-028
Identities = 147/173 (84%), Gaps = 1/173 (0%)
Strand = Plus / Minus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
|||||||| |||||||| ||||| ||||| ||||||| |||||| | ||||||||||||
Sbjct: 620 attgaagtttggcaggtaaaagccggttctgtttttg-caacatcctcatttgcgatgac 562
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||| ||| |||| |||||||| | | ||||||||||||||||||||||
Sbjct: 561 ccggaatatgcaaaacaggttgccgatgaaacgtggggtgcaaataaggaggctgaaaag 502
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
||||| ||||||| |||||||| ||||||| ||||||||||| |||||||
Sbjct: 501 gaggcttttgaagaagctgaaaaggagaggaaagctagagaagataaggaagc 449
>gb|AV910139.1|AV910139 AV910139 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak3e19 5', mRNA sequence
Length = 300
Score = 117 bits (59), Expect = 4e-025
Identities = 137/164 (83%)
Strand = Plus / Plus
Query: 23 tggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgacccagactat 82
|||||||| || || ||||| ||||||||||||| | |||||||||||||| || |||
Sbjct: 1 tggcaggtaaangccggttctgtttttgacaacancctcatttgcgatgacccggaatat 60
Query: 83 gcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaaggaggccttt 142
|||| ||| |||| |||||||| | | ||||||||| ||||||||||||||||| |||
Sbjct: 61 gcaaaacaggttgccgatgaaacgtggggtgcaaataangaggctgaaaaggaggctttt 120
Query: 143 gaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
|||| |||||||| ||||||| ||||||||||| |||||||
Sbjct: 121 gaagaagctgaaaaggagaggaaagctagagaagataaggaagc 164
>gb|BI955444.1|BI955444 HVSMEm0023C11f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0023C11f, mRNA sequence
Length = 668
Score = 113 bits (57), Expect = 7e-024
Identities = 144/173 (83%)
Strand = Plus / Plus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
|||||||| |||| ||| ||||| ||||| |||||||||||||| | ||||||||||||
Sbjct: 170 attgaagtttggcgggttaaagccggttctgtttttgacaacatcctcatttgcgatgac 229
Query: 74 ccagactatgcaagacatgttgtagatgaaacttttgctgcaaataaggaggctgaaaag 133
|| || ||||||| ||| |||| ||||||| | | ||||||||| ||||||||||||
Sbjct: 230 ccggaatatgcaaaacacgttgcccatgaaacgtggggtgcaaataatgaggctgaaaag 289
Query: 134 gaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagaggaagc 186
||||| ||||||| |||||||| ||||||| |||| |||||| |||||||
Sbjct: 290 gaggcttttgaagaagctgaaaaggagaggaaagctatagaagataaggaagc 342
>gb|BM817335.1|BM817335 HC105F07_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC105F07_T3.ab1 similar to CALRETICULIN 1 PRECURSOR
gi|2052379|gb|AAC49695.1| (U66343) calreticulin
[Arabidopsis thaliana], mRNA sequence
Length = 932
Score = 89.7 bits (45), Expect = 1e-016
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 38 ggttcagtttttgacaacattttgatttgcgatgacccagactatgcaagacatgttgta 97
||||| |||||||||||||| | |||||||||||||| || ||||||| ||| | ||
Sbjct: 713 ggttctgtttttgacaacatcctcatttgcgatgaccccgaatatgcaaaacaggntgcc 772
Query: 98 gatgaaacttttgctgcaaataaggaggctgaaaaggaggcctttgaaggagctgaaag 156
|||||||| | | ||||||||||||||||| |||||||| ||||||| |||||||||
Sbjct: 773 gatgaaacgtggggtgcaaataaggaggctgnaaaggagggctttgaaaaagctgaaag 831
>gb|AV912721.1|AV912721 AV912721 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak4p20 3', mRNA sequence
Length = 414
Score = 85.7 bits (43), Expect = 2e-015
Identities = 67/75 (89%)
Strand = Plus / Minus
Query: 112 tgcaaataaggaggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctag 171
||||||||||||||||||||||||||| ||||||| |||||||| ||||||| |||||
Sbjct: 407 tgcaaataaggaggctgaaaaggaggcttttgaagaagctgaaaaggagaggaaagctag 348
Query: 172 agaagaagaggaagc 186
|||||| |||||||
Sbjct: 347 agaagataaggaagc 333
>gb|BJ549352.1|BJ549352 BJ549352 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31d11 5', mRNA sequence
Length = 472
Score = 79.8 bits (40), Expect = 9e-014
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 14 attgaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgac 73
|||||||| |||||||| ||||| ||||| |||||||||||||| | ||||||||||||
Sbjct: 369 attgaagtttggcaggtaaaagccggttctgtttttgacaacatcctcatttgcgatgac 428
Query: 74 ccagactatgcaagacatgttgtagatgaaac 105
|| || ||||||| ||| |||| ||||||||
Sbjct: 429 ccggaatatgcaaaacaggttgccgatgaaac 460
>gb|AV910579.1|AV910579 AV910579 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak4p20 5', mRNA sequence
Length = 510
Score = 69.9 bits (35), Expect = 9e-011
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 112 tgcaaataaggaggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctag 171
|||||||||||||||||||| |||||| ||||||| |||||||| ||||||| |||||
Sbjct: 1 tgcaaataaggaggctgaaa-ggaggcttttgaagaagctgaaaaggagaggaaagctag 59
Query: 172 agaagaagaggaagc 186
|||||| |||||||
Sbjct: 60 agaagataaggaagc 74
>gb|AV920459.1|AV920459 AV920459 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14c03 3', mRNA sequence
Length = 83
Score = 69.9 bits (35), Expect = 9e-011
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 112 tgcaaataaggaggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctag 171
||| |||||| |||||||||||||||| ||||||| |||||||| ||||||| |||||
Sbjct: 79 tgcnaataagnaggctgaaaaggaggcttttgaagnagctgaaaaggagaggaaagctag 20
Query: 172 agaa 175
||||
Sbjct: 19 agaa 16
>gb|AL502158.1|AL502158 AL502158 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06K16u 3', mRNA sequence
Length = 545
Score = 65.9 bits (33), Expect = 1e-009
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Minus
Query: 115 aaataaggagg-ctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagag 173
||||||||||| ||||||||||||| ||||||| |||||||| ||||||| |||||||
Sbjct: 520 aaataaggagggctgaaaaggaggcttttgaagaagctgaaaaggagaggaaagctagag 461
Query: 174 aagaagaggaagc 186
|||| |||||||
Sbjct: 460 aagataaggaagc 448
>gb|AL502460.1|AL502460 AL502460 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07K13u 3', mRNA sequence
Length = 649
Score = 63.9 bits (32), Expect = 6e-009
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 112 tgcaaataaggaggctgaaaaggaggcctttgaaggagct 151
||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 538 tgcaaataaggaggctgaaaaggaggcttttgaagaagct 499
>gb|BF264639.1|BF264639 HV_CEa0009P11f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0009P11f, mRNA sequence
Length = 824
Score = 61.9 bits (31), Expect = 2e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 112 tgcaaataaggaggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctag 171
|||||| ||||||||| |||||||||| |||||| |||||||| ||||||| |||||
Sbjct: 560 tgcaaaaaaggaggctaaaaaggaggcttttgaactagctgaaaaggagaggaaagctag 501
Query: 172 agaagaagaggaagc 186
|||||| |||||||
Sbjct: 500 agaagataaggaagc 486
>gb|CD663623.1|CD663623 UCRHV18_06ae02_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06ae02, mRNA sequence
Length = 511
Score = 61.9 bits (31), Expect = 2e-008
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 124 ggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaagaagagga 183
||||||||||||||| ||||||| |||||||| ||||||| ||||||||||| ||||
Sbjct: 511 ggctgaaaaggaggcttttgaagaagctgaaaaggagaggaaagctagagaagataagga 452
Query: 184 agc 186
|||
Sbjct: 451 agc 449
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 58,040
Number of Sequences: 312970
Number of extensions: 58040
Number of successful extensions: 16902
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16808
Number of HSP's gapped (non-prelim): 61
length of query: 595
length of database: 175,134,539
effective HSP length: 19
effective length of query: 576
effective length of database: 169,188,109
effective search space: 97452350784
effective search space used: 97452350784
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)