BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8011540.2.1
(1916 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM374081.2|BM374081 EBma03_SQ003_J12_R maternal, 8 DPA, ... 605 e-171
gb|BU986228.1|BU986228 HF11B14r HF Hordeum vulgare subsp. v... 507 e-142
gb|BU995030.1|BU995030 HM08P15r HM Hordeum vulgare subsp. v... 377 e-103
gb|BG367458.2|BG367458 HVSMEi0012F10f Hordeum vulgare 20 DA... 373 e-101
gb|AV932343.1|AV932343 AV932343 K. Sato unpublished cDNA li... 297 7e-079
gb|AV932334.1|AV932334 AV932334 K. Sato unpublished cDNA li... 289 2e-076
gb|BJ470112.1|BJ470112 BJ470112 K. Sato unpublished cDNA li... 289 2e-076
gb|BJ472069.1|BJ472069 BJ472069 K. Sato unpublished cDNA li... 289 2e-076
gb|BJ472070.1|BJ472070 BJ472070 K. Sato unpublished cDNA li... 289 2e-076
gb|BF266005.3|BF266005 HV_CEa0013O12f Hordeum vulgare seedl... 287 7e-076
gb|AV922658.1|AV922658 AV922658 K. Sato unpublished cDNA li... 281 4e-074
gb|BF263429.1|BF263429 HV_CEa0006L14f Hordeum vulgare seedl... 266 2e-069
gb|BU985927.1|BU985927 HF09B02r HF Hordeum vulgare subsp. v... 212 3e-053
gb|BQ463378.1|BQ463378 HI05A18r HI Hordeum vulgare subsp. v... 192 3e-047
gb|BU983491.1|BU983491 HA29O17r HA Hordeum vulgare subsp. v... 186 2e-045
gb|CB883527.1|CB883527 HQ02I11w HQ Hordeum vulgare subsp. v... 180 1e-043
gb|BJ476115.1|BJ476115 BJ476115 K. Sato unpublished cDNA li... 170 1e-040
gb|BG366406.1|BG366406 HVSMEi0006P01f Hordeum vulgare 20 DA... 165 7e-039
gb|AV935194.1|AV935194 AV935194 K. Sato unpublished cDNA li... 165 7e-039
gb|AV935892.1|AV935892 AV935892 K. Sato unpublished cDNA li... 129 4e-028
gb|BG414353.2|BG414353 HVSMEk0001M01f Hordeum vulgare testa... 125 6e-027
gb|BJ473565.1|BJ473565 BJ473565 K. Sato unpublished cDNA li... 100 3e-019
gb|AV935185.1|AV935185 AV935185 K. Sato unpublished cDNA li... 94 2e-017
gb|BJ476116.1|BJ476116 BJ476116 K. Sato unpublished cDNA li... 88 1e-015
gb|BF255566.1|BF255566 HVSMEf0007D09f Hordeum vulgare seedl... 72 7e-011
gb|CA031584.1|CA031584 HX10G21r HX Hordeum vulgare subsp. v... 72 7e-011
gb|AV933439.2|AV933439 AV933439 K. Sato unpublished cDNA li... 60 3e-007
gb|AJ434488.1|AJ434488 AJ434488 S00002 Hordeum vulgare subs... 48 0.001
gb|BJ462905.1|BJ462905 BJ462905 K. Sato unpublished cDNA li... 48 0.001
gb|BQ465888.1|BQ465888 HU04P13r HU Hordeum vulgare subsp. v... 42 0.067
gb|AF085166.1|AF085166 Hordeum vulgare receptor-like kinase... 40 0.26
gb|AF085167.1|AF085167 Hordeum vulgare receptor-like kinase... 40 0.26
emb|AM087608.1| Hordeum vulgare tpase gene for transposase-... 40 0.26
>gb|BM374081.2|BM374081 EBma03_SQ003_J12_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_J12 5', mRNA sequence
Length = 552
Score = 605 bits (305), Expect = e-171
Identities = 488/549 (88%)
Strand = Plus / Plus
Query: 911 caacccaatcaactggtgcttctggccctggagcaatcgctggaggtgttgctgctggtg 970
|||| |||||| | ||||| ||| || ||||||| ||||| || || |||||||||||||
Sbjct: 4 caactcaatcagcaggtgcctctagcactggagccatcgcaggtggcgttgctgctggtg 63
Query: 971 ctgcattggtttttgctgttccagcaattgcatttgcaatgtggcgccgtcgtaaacctg 1030
||||| |||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 64 ctgcactggtgtttgctgttcctgctattgcatttgcaatgtggcgccgtcgtaaacctg 123
Query: 1031 aagagcatttcttcgatgttcctgccgaggaggatccagaagttcatcttggtcagctca 1090
|||| |||||||| ||||| ||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 124 aagaacatttctttgatgtgcctgctgaggaagatccagaagttcatcttggtcagctta 183
Query: 1091 aaaagttttcgttgcgggagcttcaagttgctactgatacttttagtaacaagcacattt 1150
| ||||| || ||||| |||||||||||||| |||| | |||| ||| ||| ||||||
Sbjct: 184 agaagttctcattgcgagagcttcaagttgcatctgacaactttaataataagaacattt 243
Query: 1151 taggaagaggtggttttggaaaagtgtacaagggaaggcttgctgatggctcattggtag 1210
|||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 244 taggaagaggtggttttggaaaagtgtacaaggggaggcttgcagatggtacattggtag 303
Query: 1211 cagtgaaaagactaaaagaggagcgcacacctggtggtgagcttcagtttcaaacagagg 1270
| ||||||||||||||||||||||| || |||||||| ||||||||||| ||||| || |
Sbjct: 304 cggtgaaaagactaaaagaggagcgtacccctggtggcgagcttcagttccaaacggaag 363
Query: 1271 ttgagatgattagcatggcagtgcacaggaaccttctccgacttcgtggtttctgcatga 1330
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 364 ttgagatgattagcatggcagtgcataggaaccttctccgacttcgtggtttttgcatga 423
Query: 1331 cacctactgaacggttgctggtctacccatacatggctaatggcagtgtggcatcacgtt 1390
||||||||||||| || || ||||| ||||||||||| ||||||||||| ||||||||||
Sbjct: 424 cacctactgaacgattactagtctatccatacatggccaatggcagtgttgcatcacgtt 483
Query: 1391 tacgagagcgccaggcatctgaaccacctcttaaatgggaaacaagaagacggattgcac 1450
| |||||||| ||| ||||||||||||| ||| | ||||| || |||||||| |||||||
Sbjct: 484 tgcgagagcgtcagccatctgaaccaccccttgattgggataccagaagacgaattgcac 543
Query: 1451 tgggatctg 1459
| |||||||
Sbjct: 544 ttggatctg 552
>gb|BU986228.1|BU986228 HF11B14r HF Hordeum vulgare subsp. vulgare cDNA clone HF11B14
5-PRIME, mRNA sequence
Length = 468
Score = 507 bits (256), Expect = e-142
Identities = 403/452 (89%)
Strand = Plus / Plus
Query: 911 caacccaatcaactggtgcttctggccctggagcaatcgctggaggtgttgctgctggtg 970
|||| |||||| | ||||| ||| || ||||||| ||||| || || |||||||||||||
Sbjct: 17 caactcaatcagcaggtgcctctagcactggagccatcgcaggtggcgttgctgctggtg 76
Query: 971 ctgcattggtttttgctgttccagcaattgcatttgcaatgtggcgccgtcgtaaacctg 1030
||||| |||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 77 ctgcactggtgtttgctgttcctgctattgcatttgcaatgtggcgccgtcgtaaacctg 136
Query: 1031 aagagcatttcttcgatgttcctgccgaggaggatccagaagttcatcttggtcagctca 1090
|||| |||||||| ||||| ||||| ||||| |||||||||||||||||||||||||| |
Sbjct: 137 aagaacatttctttgatgtgcctgctgaggaagatccagaagttcatcttggtcagctta 196
Query: 1091 aaaagttttcgttgcgggagcttcaagttgctactgatacttttagtaacaagcacattt 1150
| ||||| || ||||| |||||||||||||| |||| | |||| ||| ||| ||||||
Sbjct: 197 agaagttctcattgcgagagcttcaagttgcatctgacaactttaataataagaacattt 256
Query: 1151 taggaagaggtggttttggaaaagtgtacaagggaaggcttgctgatggctcattggtag 1210
|||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 257 taggaagaggtggttttggaaaagtgtacaaggggaggcttgcagatggtacattggtag 316
Query: 1211 cagtgaaaagactaaaagaggagcgcacacctggtggtgagcttcagtttcaaacagagg 1270
| ||||||||||||||||||||||| || |||||||| ||||||||||| ||||| || |
Sbjct: 317 cggtgaaaagactaaaagaggagcgtacccctggtggcgagcttcagttccaaacggaag 376
Query: 1271 ttgagatgattagcatggcagtgcacaggaaccttctccgacttcgtggtttctgcatga 1330
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 377 ttgagatgattagcatggcagtgcataggaaccttctccgacttcgtggtttttgcatga 436
Query: 1331 cacctactgaacggttgctggtctacccatac 1362
||||||||||||| || || ||||| ||||||
Sbjct: 437 cacctactgaacgattactagtctatccatac 468
>gb|BU995030.1|BU995030 HM08P15r HM Hordeum vulgare subsp. vulgare cDNA clone HM08P15
5-PRIME, mRNA sequence
Length = 574
Score = 377 bits (190), Expect = e-103
Identities = 401/470 (85%), Gaps = 1/470 (0%)
Strand = Plus / Plus
Query: 1441 cggattgcactgggatctgcaagaggtctttcttacttgcatgatcactgcgatcctaag 1500
||||| |||||||||||||| |||| || |||||||||||||||||||| ||||| |||
Sbjct: 24 cggatcgcactgggatctgcc-gaggactgtcttacttgcatgatcactgtgatcccaag 82
Query: 1501 atcatccatcgggatgtcaaagctgcaaatattcttttggatgaggagtttgaggcagtc 1560
||||| ||||| ||||||||||||||||| ||||| |||||||| || |||||||| ||
Sbjct: 83 atcattcatcgtgatgtcaaagctgcaaacattctcttggatgaagactttgaggcggtt 142
Query: 1561 gtaggtgatttcgggcttgccaagcttatggactacaaggatacccatgtcacaactgct 1620
|| || || || || || ||||||||||||||||||||||| || ||||| || || |||
Sbjct: 143 gtgggcgactttggactggccaagcttatggactacaaggacactcatgtaaccacagct 202
Query: 1621 gttcgtggaacaattggacacattgctcccgagtacctatccactggcaagtcctctgaa 1680
|| |||||||| || || |||||||||||||||||||||||||| || |||||||||||
Sbjct: 203 gtccgtggaacgatcgggcacattgctcccgagtacctatccaccgggaagtcctctgag 262
Query: 1681 aagaccgatgtttttggatatgggatcatgcttctggagcttattactggacagagggca 1740
||||| |||||||| || || || |||||||||||||||||||| ||||||||||||||
Sbjct: 263 aagacggatgttttcggttacggcatcatgcttctggagcttatcactggacagagggcg 322
Query: 1741 tttgatctagctcgtcttgcaaatgatgatgatgttatgcttcttgactgggtgaaagga 1800
||||| || || |||||||| ||||| || ||||| ||||| |||||||||||||||||
Sbjct: 323 tttgacctcgcacgtcttgcgaatgacgacgatgtcatgctgcttgactgggtgaaaggg 382
Query: 1801 ctgctgaaggagaaaaaggtggagatgttggtggacccagatctacagaatgcctacgag 1860
|||||||| ||||| |||||||||||| |||||||||| || || |||| | |||| |
Sbjct: 383 ctgctgaaagagaagaaggtggagatgctggtggacccggacctgcagagcgtgtacgtg 442
Query: 1861 gagatcgaggtggagaaccttatccaggtggcactcctctgcacgcaggg 1910
||| |||||||||| || ||||||||||| || || |||||||||||
Sbjct: 443 gagcacgaggtggaggcgctgatccaggtggcgctgctgtgcacgcaggg 492
>gb|BG367458.2|BG367458 HVSMEi0012F10f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0012F10f, mRNA sequence
Length = 679
Score = 373 bits (188), Expect = e-101
Identities = 389/456 (85%)
Strand = Plus / Plus
Query: 1455 atctgcaagaggtctttcttacttgcatgatcactgcgatcctaagatcatccatcggga 1514
|||||| ||||| || |||||||||||||||||||| ||||| |||||||| ||||| ||
Sbjct: 1 atctgccagaggactgtcttacttgcatgatcactgtgatcccaagatcattcatcgtga 60
Query: 1515 tgtcaaagctgcaaatattcttttggatgaggagtttgaggcagtcgtaggtgatttcgg 1574
||||||||||||||| ||||| |||||||| || |||||||| || || || || || ||
Sbjct: 61 tgtcaaagctgcaaacattctcttggatgaagactttgaggcggttgtgggcgactttgg 120
Query: 1575 gcttgccaagcttatggactacaaggatacccatgtcacaactgctgttcgtggaacaat 1634
|| ||||||||||||||||||||||| || ||||| || || ||||| |||||||| ||
Sbjct: 121 actggccaagcttatggactacaaggacactcatgtaaccacagctgtccgtggaacgat 180
Query: 1635 tggacacattgctcccgagtacctatccactggcaagtcctctgaaaagaccgatgtttt 1694
|| |||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||
Sbjct: 181 cgggcacattgctcccgagtacctatccaccgggaagtcctctgagaagacggatgtttt 240
Query: 1695 tggatatgggatcatgcttctggagcttattactggacagagggcatttgatctagctcg 1754
|| || || |||||||||||||||||||| |||||||||||||| ||||| || || ||
Sbjct: 241 cggttacggcatcatgcttctggagcttatcactggacagagggcgtttgacctcgcacg 300
Query: 1755 tcttgcaaatgatgatgatgttatgcttcttgactgggtgaaaggactgctgaaggagaa 1814
|||||| ||||| || ||||| ||||| ||||||||||||||||| |||||||| |||||
Sbjct: 301 tcttgcgaatgacgacgatgtcatgctgcttgactgggtgaaagggctgctgaaagagaa 360
Query: 1815 aaaggtggagatgttggtggacccagatctacagaatgcctacgaggagatcgaggtgga 1874
|||||||||||| |||||||||| || || |||| | |||| |||| |||||||||
Sbjct: 361 gaaggtggagatgctggtggacccggacctgcagagcgtgtacgtggagcacgaggtgga 420
Query: 1875 gaaccttatccaggtggcactcctctgcacgcaggg 1910
| || ||||||||||| || || |||||||||||
Sbjct: 421 ggcgctgatccaggtggcgctgctgtgcacgcaggg 456
>gb|AV932343.1|AV932343 AV932343 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal3d19 5', mRNA sequence
Length = 559
Score = 297 bits (150), Expect = 7e-079
Identities = 327/386 (84%)
Strand = Plus / Plus
Query: 1525 gcaaatattcttttggatgaggagtttgaggcagtcgtaggtgatttcgggcttgccaag 1584
||||| |||||||||||||| || |||||||| || || || || || || || ||||||
Sbjct: 17 gcaaacattcttttggatgaagactttgaggcggttgtgggcgactttggactggccaag 76
Query: 1585 cttatggactacaaggatacccatgtcacaactgctgttcgtggaacaattggacacatt 1644
||||||||||||||||| || ||||| || || ||||| |||||||| || || ||||||
Sbjct: 77 cttatggactacaaggacactcatgtaaccacagctgtccgtggaacgatcgggcacatt 136
Query: 1645 gctcccgagtacctatccactggcaagtcctctgaaaagaccgatgtttttggatatggg 1704
|||||||||||||||||||| || ||||||||||| ||||| |||||||| || || ||
Sbjct: 137 gctcccgagtacctatccaccgggaagtcctctgagaagacggatgttttcggttacggc 196
Query: 1705 atcatgcttctggagcttattactggacagagggcatttgatctagctcgtcttgcaaat 1764
|||||||||||||||||||| |||||||||||||| ||||| || || |||||||| |||
Sbjct: 197 atcatgcttctggagcttatcactggacagagggcgtttgacctcgcacgtcttgcgaat 256
Query: 1765 gatgatgatgttatgcttcttgactgggtgaaaggactgctgaaggagaaaaaggtggag 1824
|| || ||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 257 gacgacgatgtcatgctgcttgactgggtgaaagggctgctgaaagagaagaaggtggag 316
Query: 1825 atgttggtggacccagatctacagaatgcctacgaggagatcgaggtggagaaccttatc 1884
||| |||||||||| || || |||| | |||| |||| |||||||||| || |||
Sbjct: 317 atgctggtggacccggacctgcagagcgtgtacgtggagcacgaggtggaggcgctgatc 376
Query: 1885 caggtggcactcctctgcacgcaggg 1910
|||||||| || || |||||||||||
Sbjct: 377 caggtggcgctgctgtgcacgcaggg 402
>gb|AV932334.1|AV932334 AV932334 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal3d08 5', mRNA sequence
Length = 566
Score = 289 bits (146), Expect = 2e-076
Identities = 326/386 (84%)
Strand = Plus / Plus
Query: 1525 gcaaatattcttttggatgaggagtttgaggcagtcgtaggtgatttcgggcttgccaag 1584
||||| ||||| |||||||| || |||||||| || || || || || || || ||||||
Sbjct: 30 gcaaacattctcttggatgaagactttgaggcggttgtgggcgactttggactggccaag 89
Query: 1585 cttatggactacaaggatacccatgtcacaactgctgttcgtggaacaattggacacatt 1644
||||||||||||||||| || ||||| || || ||||| |||||||| || || ||||||
Sbjct: 90 cttatggactacaaggacactcatgtaaccacagctgtccgtggaacgatcgggcacatt 149
Query: 1645 gctcccgagtacctatccactggcaagtcctctgaaaagaccgatgtttttggatatggg 1704
|||||||||||||||||||| || ||||||||||| ||||| |||||||| || || ||
Sbjct: 150 gctcccgagtacctatccaccgggaagtcctctgagaagacggatgttttcggttacggc 209
Query: 1705 atcatgcttctggagcttattactggacagagggcatttgatctagctcgtcttgcaaat 1764
|||||||||||||||||||| |||||||||||||| ||||| || || |||||||| |||
Sbjct: 210 atcatgcttctggagcttatcactggacagagggcgtttgacctcgcacgtcttgcgaat 269
Query: 1765 gatgatgatgttatgcttcttgactgggtgaaaggactgctgaaggagaaaaaggtggag 1824
|| || ||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 270 gacgacgatgtcatgctgcttgactgggtgaaagggctgctgaaagagaagaaggtggag 329
Query: 1825 atgttggtggacccagatctacagaatgcctacgaggagatcgaggtggagaaccttatc 1884
||| |||||||||| || || |||| | |||| |||| |||||||||| || |||
Sbjct: 330 atgctggtggacccggacctgcagagcgtgtacgtggagcacgaggtggaggcgctgatc 389
Query: 1885 caggtggcactcctctgcacgcaggg 1910
|||||||| || || |||||||||||
Sbjct: 390 caggtggcgctgctgtgcacgcaggg 415
>gb|BJ470112.1|BJ470112 BJ470112 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15f09 5', mRNA sequence
Length = 562
Score = 289 bits (146), Expect = 2e-076
Identities = 326/386 (84%)
Strand = Plus / Plus
Query: 1525 gcaaatattcttttggatgaggagtttgaggcagtcgtaggtgatttcgggcttgccaag 1584
||||| ||||| |||||||| || |||||||| || || || || || || || ||||||
Sbjct: 35 gcaaacattctcttggatgaagactttgaggcggttgtgggcgactttggactggccaag 94
Query: 1585 cttatggactacaaggatacccatgtcacaactgctgttcgtggaacaattggacacatt 1644
||||||||||||||||| || ||||| || || ||||| |||||||| || || ||||||
Sbjct: 95 cttatggactacaaggacactcatgtaaccacagctgtccgtggaacgatcgggcacatt 154
Query: 1645 gctcccgagtacctatccactggcaagtcctctgaaaagaccgatgtttttggatatggg 1704
|||||||||||||||||||| || ||||||||||| ||||| |||||||| || || ||
Sbjct: 155 gctcccgagtacctatccaccgggaagtcctctgagaagacggatgttttcggttacggc 214
Query: 1705 atcatgcttctggagcttattactggacagagggcatttgatctagctcgtcttgcaaat 1764
|||||||||||||||||||| |||||||||||||| ||||| || || |||||||| |||
Sbjct: 215 atcatgcttctggagcttatcactggacagagggcgtttgacctcgcacgtcttgcgaat 274
Query: 1765 gatgatgatgttatgcttcttgactgggtgaaaggactgctgaaggagaaaaaggtggag 1824
|| || ||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 275 gacgacgatgtcatgctgcttgactgggtgaaagggctgctgaaagagaagaaggtggag 334
Query: 1825 atgttggtggacccagatctacagaatgcctacgaggagatcgaggtggagaaccttatc 1884
||| |||||||||| || || |||| | |||| |||| |||||||||| || |||
Sbjct: 335 atgctggtggacccggacctgcagagcgtgtacgtggagcacgaggtggaggcgctgatc 394
Query: 1885 caggtggcactcctctgcacgcaggg 1910
|||||||| || || |||||||||||
Sbjct: 395 caggtggcgctgctgtgcacgcaggg 420
>gb|BJ472069.1|BJ472069 BJ472069 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal32b05 5', mRNA sequence
Length = 594
Score = 289 bits (146), Expect = 2e-076
Identities = 326/386 (84%)
Strand = Plus / Plus
Query: 1525 gcaaatattcttttggatgaggagtttgaggcagtcgtaggtgatttcgggcttgccaag 1584
||||| ||||| |||||||| || |||||||| || || || || || || || ||||||
Sbjct: 25 gcaaacattctcttggatgaagactttgaggcggttgtgggcgactttggactggccaag 84
Query: 1585 cttatggactacaaggatacccatgtcacaactgctgttcgtggaacaattggacacatt 1644
||||||||||||||||| || ||||| || || ||||| |||||||| || || ||||||
Sbjct: 85 cttatggactacaaggacactcatgtaaccacagctgtccgtggaacgatcgggcacatt 144
Query: 1645 gctcccgagtacctatccactggcaagtcctctgaaaagaccgatgtttttggatatggg 1704
|||||||||||||||||||| || ||||||||||| ||||| |||||||| || || ||
Sbjct: 145 gctcccgagtacctatccaccgggaagtcctctgagaagacggatgttttcggttacggc 204
Query: 1705 atcatgcttctggagcttattactggacagagggcatttgatctagctcgtcttgcaaat 1764
|||||||||||||||||||| |||||||||||||| ||||| || || |||||||| |||
Sbjct: 205 atcatgcttctggagcttatcactggacagagggcgtttgacctcgcacgtcttgcgaat 264
Query: 1765 gatgatgatgttatgcttcttgactgggtgaaaggactgctgaaggagaaaaaggtggag 1824
|| || ||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 265 gacgacgatgtcatgctgcttgactgggtgaaagggctgctgaaagagaagaaggtggag 324
Query: 1825 atgttggtggacccagatctacagaatgcctacgaggagatcgaggtggagaaccttatc 1884
||| |||||||||| || || |||| | |||| |||| |||||||||| || |||
Sbjct: 325 atgctggtggacccggacctgcagagcgtgtacgtggagcacgaggtggaggcgctgatc 384
Query: 1885 caggtggcactcctctgcacgcaggg 1910
|||||||| || || |||||||||||
Sbjct: 385 caggtggcgctgctgtgcacgcaggg 410
>gb|BJ472070.1|BJ472070 BJ472070 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal32b06 5', mRNA sequence
Length = 525
Score = 289 bits (146), Expect = 2e-076
Identities = 326/386 (84%)
Strand = Plus / Plus
Query: 1525 gcaaatattcttttggatgaggagtttgaggcagtcgtaggtgatttcgggcttgccaag 1584
||||| ||||| |||||||| || |||||||| || || || || || || || ||||||
Sbjct: 39 gcaaacattctcttggatgaagactttgaggcggttgtgggcgactttggactggccaag 98
Query: 1585 cttatggactacaaggatacccatgtcacaactgctgttcgtggaacaattggacacatt 1644
||||||||||||||||| || ||||| || || ||||| |||||||| || || ||||||
Sbjct: 99 cttatggactacaaggacactcatgtaaccacagctgtccgtggaacgatcgggcacatt 158
Query: 1645 gctcccgagtacctatccactggcaagtcctctgaaaagaccgatgtttttggatatggg 1704
|||||||||||||||||||| || ||||||||||| ||||| |||||||| || || ||
Sbjct: 159 gctcccgagtacctatccaccgggaagtcctctgagaagacggatgttttcggttacggc 218
Query: 1705 atcatgcttctggagcttattactggacagagggcatttgatctagctcgtcttgcaaat 1764
|||||||||||||||||||| |||||||||||||| ||||| || || |||||||| |||
Sbjct: 219 atcatgcttctggagcttatcactggacagagggcgtttgacctcgcacgtcttgcgaat 278
Query: 1765 gatgatgatgttatgcttcttgactgggtgaaaggactgctgaaggagaaaaaggtggag 1824
|| || ||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 279 gacgacgatgtcatgctgcttgactgggtgaaagggctgctgaaagagaagaaggtggag 338
Query: 1825 atgttggtggacccagatctacagaatgcctacgaggagatcgaggtggagaaccttatc 1884
||| |||||||||| || || |||| | |||| |||| |||||||||| || |||
Sbjct: 339 atgctggtggacccggacctgcagagcgtgtacgtggagcacgaggtggaggcgctgatc 398
Query: 1885 caggtggcactcctctgcacgcaggg 1910
|||||||| || || |||||||||||
Sbjct: 399 caggtggcgctgctgtgcacgcaggg 424
>gb|BF266005.3|BF266005 HV_CEa0013O12f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013O12f, mRNA sequence
Length = 796
Score = 287 bits (145), Expect = 7e-076
Identities = 293/341 (85%), Gaps = 1/341 (0%)
Strand = Plus / Plus
Query: 1499 agatcatccatcgggatgtcaaagctgcaaatattcttttggatgaggagtt-tgaggca 1557
||||||| ||||| ||||||||||||||||| ||||| |||||||| || | ||||||
Sbjct: 4 agatcattcatcgtgatgtcaaagctgcaaacattctcttggatgaagactggtgaggcg 63
Query: 1558 gtcgtaggtgatttcgggcttgccaagcttatggactacaaggatacccatgtcacaact 1617
|| || || || || || || ||||||||||||||||||||||| || ||||| || ||
Sbjct: 64 gttgtgggcgactttggactggccaagcttatggactacaaggacactcatgtaaccaca 123
Query: 1618 gctgttcgtggaacaattggacacattgctcccgagtacctatccactggcaagtcctct 1677
||||| |||||||| || || |||||||||||||||||||||||||| || |||||||||
Sbjct: 124 gctgtccgtggaacgatcgggcacattgctcccgagtacctatccaccgggaagtcctct 183
Query: 1678 gaaaagaccgatgtttttggatatgggatcatgcttctggagcttattactggacagagg 1737
|| ||||| |||||||| || || || |||||||||||||||||||| ||||||||||||
Sbjct: 184 gagaagacggatgttttcggttacggcatcatgcttctggagcttatcactggacagagg 243
Query: 1738 gcatttgatctagctcgtcttgcaaatgatgatgatgttatgcttcttgactgggtgaaa 1797
|| ||||| || || |||||||| ||||| | ||||| ||||| |||||||||||||||
Sbjct: 244 gcgtttgacctcgcacgtcttgcgaatgacaacgatgtcatgctgcttgactgggtgaaa 303
Query: 1798 ggactgctgaaggagaaaaaggtggagatgttggtggaccc 1838
|| |||||||| ||||| |||||||||||| ||||||||||
Sbjct: 304 gggctgctgaaagagaagaaggtggagatgctggtggaccc 344
>gb|AV922658.1|AV922658 AV922658 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd0c01 5', mRNA sequence
Length = 505
Score = 281 bits (142), Expect = 4e-074
Identities = 271/314 (86%)
Strand = Plus / Plus
Query: 1525 gcaaatattcttttggatgaggagtttgaggcagtcgtaggtgatttcgggcttgccaag 1584
||||| ||||| |||||||| || |||||||| || || || || || || || ||||||
Sbjct: 34 gcaaacattctcttggatgaagactttgaggcggttgtgggcgactttggactggccaag 93
Query: 1585 cttatggactacaaggatacccatgtcacaactgctgttcgtggaacaattggacacatt 1644
||||||||||||||||| || ||||| || || ||||| |||||||| || || ||||||
Sbjct: 94 cttatggactacaaggacactcatgtaaccacagctgtccgtggaacgatcgggcacatt 153
Query: 1645 gctcccgagtacctatccactggcaagtcctctgaaaagaccgatgtttttggatatggg 1704
|||||||||||||||||||| || ||||||||||| ||||| |||||||| || || ||
Sbjct: 154 gctcccgagtacctatccaccgggaagtcctctgagaagacggatgttttcggttacggc 213
Query: 1705 atcatgcttctggagcttattactggacagagggcatttgatctagctcgtcttgcaaat 1764
|||||||||||||||||||| |||||||||||||| ||||| || || |||||||| |||
Sbjct: 214 atcatgcttctggagcttatcactggacagagggcgtttgacctcgcacgtcttgcgaat 273
Query: 1765 gatgatgatgttatgcttcttgactgggtgaaaggactgctgaaggagaaaaaggtggag 1824
|| || ||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||||
Sbjct: 274 gacgacgatgtcatgctgcttgactgggtgaaagggctgctgaaagagaagaaggtggag 333
Query: 1825 atgttggtggaccc 1838
||| ||||||||||
Sbjct: 334 atgctggtggaccc 347
>gb|BF263429.1|BF263429 HV_CEa0006L14f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0006L14f, mRNA sequence
Length = 914
Score = 266 bits (134), Expect = 2e-069
Identities = 285/330 (86%), Gaps = 4/330 (1%)
Strand = Plus / Minus
Query: 1585 cttatggactacaaggatacccatgtcacaactgctgttcgtggaacaattggacacatt 1644
|||||||| ||| ||||||| ||||| || ||||||||||||||| ||||||||||||||
Sbjct: 786 cttatggattaccaggatactcatgtaactactgctgttcgtggaccaattggacacatt 727
Query: 1645 gctcccgagtacctatccactggcaagtcc-tctgaaaagaccgatgtttttggatatgg 1703
||||| ||||||||||||||||| |||||| ||| ||||||| ||||||| || || ||
Sbjct: 726 gctcctgagtacctatccactgg-aagtccctct-aaaagact-atgttttcgggtacgg 670
Query: 1704 gatcatgcttctggagcttattactggacagagggcatttgatctagctcgtcttgcaaa 1763
|||| |||||||||||||||| ||| ||||||||||||||||| ||||| ||||||||
Sbjct: 669 aatcacacttctggagcttattattgggcagagggcatttgatcttgctcgccttgcaaa 610
Query: 1764 tgatgatgatgttatgcttcttgactgggtgaaaggactgctgaaggagaaaaaggtgga 1823
|||||| |||| |||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct: 609 tgatgacgatggtatgcttcttgactgggtgaaagggttgttgaaggagaaaaaggttga 550
Query: 1824 gatgttggtggacccagatctacagaatgcctacgaggagatcgaggtggagaaccttat 1883
|||| |||||||||| || | |||| ||||||||||| ||||||||| || ||
Sbjct: 549 gatgctggtggacccggacttgcagagcaactacgaggagaccgaggtggaatcgctgat 490
Query: 1884 ccaggtggcactcctctgcacgcagggctc 1913
||||||||| || |||||||||||||||||
Sbjct: 489 ccaggtggcgctgctctgcacgcagggctc 460
>gb|BU985927.1|BU985927 HF09B02r HF Hordeum vulgare subsp. vulgare cDNA clone HF09B02
5-PRIME, mRNA sequence
Length = 518
Score = 212 bits (107), Expect = 3e-053
Identities = 383/475 (80%)
Strand = Plus / Plus
Query: 1312 cttcgtggtttctgcatgacacctactgaacggttgctggtctacccatacatggctaat 1371
|||||||| ||||| |||||||| || ||| ||||||| || |||||||||||||||||
Sbjct: 44 cttcgtggattctgtatgacaccaacagaaaggttgcttgtgtacccatacatggctaac 103
Query: 1372 ggcagtgtggcatcacgtttacgagagcgccaggcatctgaaccacctcttaaatgggaa 1431
|| ||||| ||||||||| || |||| || | || ||||||| || || | ||| ||
Sbjct: 104 ggaagtgttgcatcacgtctaagagaacgagggccagctgaaccgccactggattggcaa 163
Query: 1432 acaagaagacggattgcactgggatctgcaagaggtctttcttacttgcatgatcactgc 1491
|| |||||| | |||||| |||| ||||| || || || || || || |||||||||||
Sbjct: 164 acgagaagaagaattgcattgggttctgccaggggcctctcctatttacatgatcactgt 223
Query: 1492 gatcctaagatcatccatcgggatgtcaaagctgcaaatattcttttggatgaggagttt 1551
||||| |||||||||||||| ||||| ||||||||||||||| | || ||||| || |||
Sbjct: 224 gatccaaagatcatccatcgtgatgtgaaagctgcaaatattttattagatgaagacttt 283
Query: 1552 gaggcagtcgtaggtgatttcgggcttgccaagcttatggactacaaggatacccatgtc 1611
|| || || || || ||||| || | ||||| || ||||| |||||||||||||||||
Sbjct: 284 gaagctgtagtgggggattttggtttggccaaactaatggattacaaggatacccatgta 343
Query: 1612 acaactgctgttcgtggaacaattggacacattgctcccgagtacctatccactggcaag 1671
||||||||||| |||||||||||||| || || || || || || || || || || ||
Sbjct: 344 acaactgctgtgcgtggaacaattgggcatatcgcaccagaatatctttcaacaggaaaa 403
Query: 1672 tcctctgaaaagaccgatgtttttggatatgggatcatgcttctggagcttattactgga 1731
||||| || || || ||||| || || ||||| || |||||| ||||||||||||| |||
Sbjct: 404 tcctcagagaaaactgatgtattcggttatggaattatgcttttggagcttattacagga 463
Query: 1732 cagagggcatttgatctagctcgtcttgcaaatgatgatgatgttatgcttcttg 1786
||| | || |||||||| ||||| ||||| ||||| || ||||| ||||| ||||
Sbjct: 464 cagcgtgcttttgatcttgctcggcttgccaatgacgacgatgtcatgctacttg 518
>gb|BQ463378.1|BQ463378 HI05A18r HI Hordeum vulgare subsp. vulgare cDNA clone HI05A18
5-PRIME, mRNA sequence
Length = 570
Score = 192 bits (97), Expect = 3e-047
Identities = 256/309 (82%)
Strand = Plus / Plus
Query: 303 cgccaacaccgagggcgatgctctatacagcctgcggcagagcttgatagatacgaacaa 362
||||||||| ||||| |||||||| ||||| ||||| || ||| | | |||| | |||||
Sbjct: 258 cgccaacacagagggtgatgctctgtacagtctgcgccaaagccttaaagatgctaacaa 317
Query: 363 tgtcttgcagagttgggattccactcttgttaatccatgtacatggtttcacgttacgtg 422
||| |||||||||||||| ||||||| ||||||||||| |||||||| || ||||| ||
Sbjct: 318 tgtgctgcagagttgggatcccactctggttaatccatgcacatggttccatgttacttg 377
Query: 423 taacagcgataacagtgttatcagagttgaccttggaaatgcacaattatctggcgtcct 482
||||| ||| |||||||| ||||||||||| |||||||| |||||| | || || | |
Sbjct: 378 taacaccgacaacagtgtaatcagagttgatcttggaaacgcacaactgtcaggtgcatt 437
Query: 483 agtgccacagcttggtcagctgaaaaatctccaatatttggagctttacagcaacaaaat 542
||| | || ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||
Sbjct: 438 ggtgtcccaacttggacagttgaaaaatctacaatatttggagctgtacagcaacaatat 497
Query: 543 aagtggggcaataccccctgaactggggaacctaactaaccttgtcagtttggatctgta 602
||||||| |||||| ||||| |||||| | || ||||| |||||||||||||||||
Sbjct: 498 aagtgggataatacctttggaacttgggaacttgacaaacctggtcagtttggatctgta 557
Query: 603 tatgaacaa 611
|||||||
Sbjct: 558 cctgaacaa 566
>gb|BU983491.1|BU983491 HA29O17r HA Hordeum vulgare subsp. vulgare cDNA clone HA29O17
5-PRIME, mRNA sequence
Length = 514
Score = 186 bits (94), Expect = 2e-045
Identities = 205/242 (84%)
Strand = Plus / Plus
Query: 1669 aagtcctctgaaaagaccgatgtttttggatatgggatcatgcttctggagcttattact 1728
||||||||||| ||||| |||||||| || || || |||||||||||||||||||| |||
Sbjct: 12 aagtcctctgagaagacggatgttttcggttacggcatcatgcttctggagcttatcact 71
Query: 1729 ggacagagggcatttgatctagctcgtcttgcaaatgatgatgatgttatgcttcttgac 1788
||||||||||| ||||| || || |||||||| ||||| || ||||| ||||| ||||||
Sbjct: 72 ggacagagggcgtttgacctcgcacgtcttgcgaatgacgacgatgtcatgctgcttgac 131
Query: 1789 tgggtgaaaggactgctgaaggagaaaaaggtggagatgttggtggacccagatctacag 1848
||||||||||| |||||||| ||||| |||||||||||| |||||||||| || || |||
Sbjct: 132 tgggtgaaagggctgctgaaagagaagaaggtggagatgctggtggacccggacctgcag 191
Query: 1849 aatgcctacgaggagatcgaggtggagaaccttatccaggtggcactcctctgcacgcag 1908
| | |||| |||| |||||||||| || ||||||||||| || || |||||||||
Sbjct: 192 agcgtgtacgtggagcacgaggtggaggcgctgatccaggtggcgctgctgtgcacgcag 251
Query: 1909 gg 1910
||
Sbjct: 252 gg 253
>gb|CB883527.1|CB883527 HQ02I11w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ02I11
3-PRIME, mRNA sequence
Length = 625
Score = 180 bits (91), Expect = 1e-043
Identities = 246/298 (82%)
Strand = Plus / Plus
Query: 303 cgccaacaccgagggcgatgctctatacagcctgcggcagagcttgatagatacgaacaa 362
||||||||| ||||| |||||||| ||||| ||||| || ||| | | |||| | |||||
Sbjct: 328 cgccaacacagagggtgatgctctgtacagtctgcgccaaagccttaaagatgctaacaa 387
Query: 363 tgtcttgcagagttgggattccactcttgttaatccatgtacatggtttcacgttacgtg 422
||| |||||||||||||| ||||||| ||||||||||| |||||||| || ||||| ||
Sbjct: 388 tgtgctgcagagttgggatcccactctggttaatccatgcacatggttccatgttacttg 447
Query: 423 taacagcgataacagtgttatcagagttgaccttggaaatgcacaattatctggcgtcct 482
||||| ||| |||||||| ||||||||||| |||||||| |||||| | || || | |
Sbjct: 448 taacaccgacaacagtgtaatcagagttgatcttggaaacgcacaactgtcaggtgcatt 507
Query: 483 agtgccacagcttggtcagctgaaaaatctccaatatttggagctttacagcaacaaaat 542
||| | || ||||| ||| |||||||||| |||||||||||||| ||||||||||| ||
Sbjct: 508 ggtgtcccaacttggacagttgaaaaatctacaatatttggagctgtacagcaacaatat 567
Query: 543 aagtggggcaataccccctgaactggggaacctaactaaccttgtcagtttggatctg 600
||||||| |||||| ||||| |||||| | | ||||| |||||||||||||||
Sbjct: 568 aagtgggataatacctttggaacttgggaacttgancaacctggtcagtttggatctg 625
>gb|BJ476115.1|BJ476115 BJ476115 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal32b05 3', mRNA sequence
Length = 708
Score = 170 bits (86), Expect = 1e-040
Identities = 194/230 (84%)
Strand = Plus / Minus
Query: 1681 aagaccgatgtttttggatatgggatcatgcttctggagcttattactggacagagggca 1740
||||| |||||||| || || || |||||||||||||||||||| ||||||||||||||
Sbjct: 706 aagacggatgttttcggttacggcatcatgcttctggagcttatcactggacagagggcg 647
Query: 1741 tttgatctagctcgtcttgcaaatgatgatgatgttatgcttcttgactgggtgaaagga 1800
||||| || || |||||||| ||||| || ||||| ||||| |||||||||||||||||
Sbjct: 646 tttgacctcgcacgtcttgcgaatgacgacgatgtcatgctgcttgactgggtgaaaggg 587
Query: 1801 ctgctgaaggagaaaaaggtggagatgttggtggacccagatctacagaatgcctacgag 1860
|||||||| ||||| |||||||||||| |||||||||| || || |||| | |||| |
Sbjct: 586 ctgctgaaagagaagaaggtggagatgctggtggacccggacctgcagagcgtgtacgtg 527
Query: 1861 gagatcgaggtggagaaccttatccaggtggcactcctctgcacgcaggg 1910
||| |||||||||| || ||||||||||| || || |||||||||||
Sbjct: 526 gagcacgaggtggaggcgctgatccaggtggcgctgctgtgcacgcaggg 477
>gb|BG366406.1|BG366406 HVSMEi0006P01f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0006P01f, mRNA sequence
Length = 832
Score = 165 bits (83), Expect = 7e-039
Identities = 170/199 (85%)
Strand = Plus / Plus
Query: 1455 atctgcaagaggtctttcttacttgcatgatcactgcgatcctaagatcatccatcggga 1514
|||||| ||||| || |||||||||||||||||||| ||||| |||||||| ||||| ||
Sbjct: 1 atctgccagaggactgtcttacttgcatgatcactgtgatcccaagatcattcatcgtga 60
Query: 1515 tgtcaaagctgcaaatattcttttggatgaggagtttgaggcagtcgtaggtgatttcgg 1574
||||||||||||||| ||||| |||||||| || |||||||| || || || || || ||
Sbjct: 61 tgtcaaagctgcaaacattctcttggatgaagactttgaggcggttgtgggcgactttgg 120
Query: 1575 gcttgccaagcttatggactacaaggatacccatgtcacaactgctgttcgtggaacaat 1634
|| ||||||||||||||||||||||| || ||||| || || ||||| |||||||| ||
Sbjct: 121 actggccaagcttatggactacaaggacactcatgtaaccacagctgtgcgtggaacgat 180
Query: 1635 tggacacattgctcccgag 1653
|| ||||||| |||||||
Sbjct: 181 cgggcacattggtcccgag 199
>gb|AV935194.1|AV935194 AV935194 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal3d19 3', mRNA sequence
Length = 687
Score = 165 bits (83), Expect = 7e-039
Identities = 195/231 (84%), Gaps = 1/231 (0%)
Strand = Plus / Minus
Query: 1681 aagaccgatgtttttggatatggg-atcatgcttctggagcttattactggacagagggc 1739
||||| |||||||| || || ||| |||||||||||||||||||| ||||||||||||||
Sbjct: 683 aagacggatgttttcggttacgggcatcatgcttctggagcttatcactggacagagggc 624
Query: 1740 atttgatctagctcgtcttgcaaatgatgatgatgttatgcttcttgactgggtgaaagg 1799
||||| || || |||||||| ||||| || ||||| ||||| |||||||||||||||||
Sbjct: 623 gtttgacctcgcacgtcttgcgaatgacgacgatgtcatgctgcttgactgggtgaaagg 564
Query: 1800 actgctgaaggagaaaaaggtggagatgttggtggacccagatctacagaatgcctacga 1859
|||||||| ||||| |||||||||||| |||||||||| || || |||| | ||||
Sbjct: 563 gctgctgaaagagaagaaggtggagatgctggtggacccggacctgcagagcgtgtacgt 504
Query: 1860 ggagatcgaggtggagaaccttatccaggtggcactcctctgcacgcaggg 1910
|||| |||||||||| || ||||||||||| || || |||||||||||
Sbjct: 503 ggagcacgaggtggaggcgctgatccaggtggcgctgctgtgcacgcaggg 453
>gb|AV935892.1|AV935892 AV935892 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6o07 3', mRNA sequence
Length = 713
Score = 129 bits (65), Expect = 4e-028
Identities = 133/153 (86%), Gaps = 2/153 (1%)
Strand = Plus / Minus
Query: 1688 atgtttttggatatgggatcatgcttctggagcttattactggac-agagggcatttgat 1746
||||||| || || || |||||||||||||||||||| ||||||| ||||||| |||||
Sbjct: 702 atgttttcggttacggcatcatgcttctggagcttatcactggaccagagggcgtttgac 643
Query: 1747 ctagctcgtcttgcaaatgatgatga-tgttatgcttcttgactgggtgaaaggactgct 1805
|| || |||||||| ||||| || || ||| ||||| ||||||||||||||||| |||||
Sbjct: 642 ctcgcacgtcttgcgaatgacgacgaatgtcatgctgcttgactgggtgaaagggctgct 583
Query: 1806 gaaggagaaaaaggtggagatgttggtggaccc 1838
||| ||||| |||||||||||| ||||||||||
Sbjct: 582 gaaagagaagaaggtggagatgctggtggaccc 550
>gb|BG414353.2|BG414353 HVSMEk0001M01f Hordeum vulgare testa/pericarp EST library HVcDNA0013
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEk0001M01f, mRNA sequence
Length = 566
Score = 125 bits (63), Expect = 6e-027
Identities = 129/151 (85%)
Strand = Plus / Plus
Query: 1699 tatgggatcatgcttctggagcttattactggacagagggcatttgatctagctcgtctt 1758
||||| || |||||| ||||||||||||| |||||| | || |||||||| ||||| |||
Sbjct: 203 tatggaattatgcttttggagcttattacaggacagcgtgcttttgatcttgctcggctt 262
Query: 1759 gcaaatgatgatgatgttatgcttcttgactgggtgaaaggactgctgaaggagaaaaag 1818
|| ||||| || ||||| ||||| |||||||||||||||||| |||| ||||||| ||
Sbjct: 263 gccaatgacgacgatgtcatgctacttgactgggtgaaaggattgctcaaggagagaaga 322
Query: 1819 gtggagatgttggtggacccagatctacaga 1849
|||||||||||||||| ||||| |||||||
Sbjct: 323 ctggagatgttggtggatccagacctacaga 353
Score = 111 bits (56), Expect = 9e-023
Identities = 119/140 (85%)
Strand = Plus / Plus
Query: 1498 aagatcatccatcgggatgtcaaagctgcaaatattcttttggatgaggagtttgaggca 1557
|||||||||||||| ||||| ||||||||||||||| | || ||||| || ||||| ||
Sbjct: 2 aagatcatccatcgtgatgtgaaagctgcaaatattttattagatgaagactttgaagct 61
Query: 1558 gtcgtaggtgatttcgggcttgccaagcttatggactacaaggatacccatgtcacaact 1617
|| || || ||||| || | ||||| || ||||| ||||||||||||||||| ||||||
Sbjct: 62 gtagtgggggattttggtttggccaaactaatggattacaaggatacccatgtaacaact 121
Query: 1618 gctgttcgtggaacaattgg 1637
||||| ||||||||||||||
Sbjct: 122 gctgtgcgtggaacaattgg 141
>gb|BJ473565.1|BJ473565 BJ473565 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal15f09 3', mRNA sequence
Length = 628
Score = 99.6 bits (50), Expect = 3e-019
Identities = 128/154 (83%)
Strand = Plus / Minus
Query: 1757 ttgcaaatgatgatgatgttatgcttcttgactgggtgaaaggactgctgaaggagaaaa 1816
|||| ||||| || ||||| ||||| ||||||||||||||||| |||||||| ||||| |
Sbjct: 628 ttgcgaatgacgacgatgtcatgctgcttgactgggtgaaagggctgctgaaagagaaga 569
Query: 1817 aggtggagatgttggtggacccagatctacagaatgcctacgaggagatcgaggtggaga 1876
||||||||||| |||||||||| || || |||| | |||| |||| ||||||||||
Sbjct: 568 aggtggagatgctggtggacccggacctgcagagcgtgtacgtggagcacgaggtggagg 509
Query: 1877 accttatccaggtggcactcctctgcacgcaggg 1910
|| ||||||||||| || || |||||||||||
Sbjct: 508 cgctgatccaggtggcgctgctgtgcacgcaggg 475
>gb|AV935185.1|AV935185 AV935185 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal3d08 3', mRNA sequence
Length = 630
Score = 93.7 bits (47), Expect = 2e-017
Identities = 116/139 (83%)
Strand = Plus / Minus
Query: 1772 atgttatgcttcttgactgggtgaaaggactgctgaaggagaaaaaggtggagatgttgg 1831
|||| ||||| ||||||||||||||||| |||||||| ||||| |||||||||||| |||
Sbjct: 612 atgtcatgctgcttgactgggtgaaagggctgctgaaagagaagaaggtggagatgctgg 553
Query: 1832 tggacccagatctacagaatgcctacgaggagatcgaggtggagaaccttatccaggtgg 1891
||||||| || || |||| | |||| |||| |||||||||| || ||||||||||
Sbjct: 552 tggacccggacctgcagagcgtgtacgtggagcacgaggtggaggcgctgatccaggtgg 493
Query: 1892 cactcctctgcacgcaggg 1910
| || || |||||||||||
Sbjct: 492 cgctgctgtgcacgcaggg 474
>gb|BJ476116.1|BJ476116 BJ476116 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal32b06 3', mRNA sequence
Length = 577
Score = 87.7 bits (44), Expect = 1e-015
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 1771 gatgttatgcttcttgactgggtgaaaggactgctgaaggagaaaaaggtggagatgttg 1830
||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||||||| ||
Sbjct: 573 gatgtcatgctgcttgactgggtgaaagggctgctgaaagagaagaaggtggagatgctg 514
Query: 1831 gtggaccc 1838
||||||||
Sbjct: 513 gtggaccc 506
>gb|BF255566.1|BF255566 HVSMEf0007D09f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0007D09f, mRNA sequence
Length = 912
Score = 71.9 bits (36), Expect = 7e-011
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 373 agttgggattccactcttgttaatccatgtacatggtttcacgttacgtgtaacagcgat 432
||||||||| | ||||| || ||||| || || |||||||| ||||| || |||| |||
Sbjct: 194 agttgggatccaactctggtcaatccgtgcacttggtttcatgttacttgcaacaacgac 253
Query: 433 aacagtgttatcagagttgaccttggaaatgc 464
||||| |||||||||||||| |||||||||||
Sbjct: 254 aacagcgttatcagagttgatcttggaaatgc 285
>gb|CA031584.1|CA031584 HX10G21r HX Hordeum vulgare subsp. vulgare cDNA clone HX10G21
5-PRIME, mRNA sequence
Length = 613
Score = 71.9 bits (36), Expect = 7e-011
Identities = 78/92 (84%)
Strand = Plus / Plus
Query: 373 agttgggattccactcttgttaatccatgtacatggtttcacgttacgtgtaacagcgat 432
||||||||| | ||||| || ||||| || || |||||||| ||||| || |||| |||
Sbjct: 300 agttgggatccaactctggtcaatccgtgcacttggtttcatgttacttgcaacaacgac 359
Query: 433 aacagtgttatcagagttgaccttggaaatgc 464
||||| |||||||||||||| |||||||||||
Sbjct: 360 aacagcgttatcagagttgatcttggaaatgc 391
Score = 56.0 bits (28), Expect = 4e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 640 gggaatctattgaagctgcgtttcctacgtcttaacaacaacag 683
||||| ||||||||||| || ||||| |||||||||||||||||
Sbjct: 567 gggaacctattgaagctacgattcctgcgtcttaacaacaacag 610
>gb|AV933439.2|AV933439 AV933439 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal6o07 5', mRNA sequence
Length = 122
Score = 60.0 bits (30), Expect = 3e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 1525 gcaaatattcttttggatgaggagtttgaggcagtcgtaggtgatttcgggcttgccaag 1584
||||| ||||| |||||||| || |||||||| || || || || || || || ||||||
Sbjct: 37 gcaaacattctcttggatgaagactttgaggcggttgtgggcgactttggactggccaag 96
Query: 1585 cttatggactacaaggatacccatgt 1610
||||||||||||||||| || |||||
Sbjct: 97 cttatggactacaaggacactcatgt 122
>gb|AJ434488.1|AJ434488 AJ434488 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200073F03F1, mRNA sequence
Length = 477
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1882 atccaggtggcactcctctgcacgcagggctc 1913
||||||||||| || |||||||||||||||||
Sbjct: 17 atccaggtggcgctgctctgcacgcagggctc 48
>gb|BJ462905.1|BJ462905 BJ462905 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags24n16 5', mRNA sequence
Length = 634
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 1508 atcgggatgtcaaagctgcaaatattcttttggatg 1543
|||||||| ||||| || ||||||||||||||||||
Sbjct: 241 atcgggatttcaaaacttcaaatattcttttggatg 276
>gb|BQ465888.1|BQ465888 HU04P13r HU Hordeum vulgare subsp. vulgare cDNA clone HU04P13
5-PRIME, mRNA sequence
Length = 580
Score = 42.1 bits (21), Expect = 0.067
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 1486 cactgcgatcctaagatcatccatcgggatgtcaaagctgc 1526
|||||| ||||||||||||| || || |||||||| |||||
Sbjct: 371 cactgcaatcctaagatcatacaccgtgatgtcaaggctgc 411
>gb|AF085166.1|AF085166 Hordeum vulgare receptor-like kinase gene, partial cds
Length = 2559
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1567 gatttcgggcttgccaagct 1586
||||||||||||||||||||
Sbjct: 2061 gatttcgggcttgccaagct 2080
>gb|AF085167.1|AF085167 Hordeum vulgare receptor-like kinase ARK1AS gene, partial cds
Length = 2849
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1567 gatttcgggcttgccaagct 1586
||||||||||||||||||||
Sbjct: 2387 gatttcgggcttgccaagct 2406
>emb|AM087608.1| Hordeum vulgare tpase gene for transposase-related protein b-gary,
exons 1-4
Length = 8190
Score = 40.1 bits (20), Expect = 0.26
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 99 aggaggaagagggagaaggagagg 122
|||||||||||| |||||||||||
Sbjct: 5830 aggaggaagaggaagaaggagagg 5807
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 209,701
Number of Sequences: 312970
Number of extensions: 209701
Number of successful extensions: 59445
Number of sequences better than 0.5: 33
Number of HSP's better than 0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59373
Number of HSP's gapped (non-prelim): 54
length of query: 1916
length of database: 175,134,539
effective HSP length: 20
effective length of query: 1896
effective length of database: 168,875,139
effective search space: 320187263544
effective search space used: 320187263544
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)