BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8010573.2.1
(1223 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF267606.1|BF267606 HV_CEa0018G10f Hordeum vulgare seedl... 450 e-125
gb|CA019178.1|CA019178 HV11B18r HV Hordeum vulgare subsp. v... 446 e-124
gb|BE216242.1|BE216242 HV_CEb0009P07f Hordeum vulgare seedl... 442 e-122
gb|BI953155.1|BI953155 HVSMEm0011G01f Hordeum vulgare green... 406 e-112
gb|BI954358.1|BI954358 HVSMEm0017G17f Hordeum vulgare green... 398 e-109
gb|BI956177.1|BI956177 HVSMEm0025O16f Hordeum vulgare green... 317 5e-085
gb|BG309189.1|BG309189 HVSMEc0004M02f Hordeum vulgare seedl... 246 1e-063
gb|BF627738.2|BF627738 HVSMEb0005K17f Hordeum vulgare seedl... 214 5e-054
gb|BQ759958.1|BQ759958 EBpi05_SQ004_P23_R pistil, 8 DPA, no... 214 5e-054
emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotra... 214 5e-054
gb|BE195774.3|BE195774 HVSMEh0090G19f Hordeum vulgare 5-45 ... 208 3e-052
gb|BF626739.2|BF626739 HVSMEb0001D16f Hordeum vulgare seedl... 206 1e-051
gb|BF628380.2|BF628380 HVSMEb0003O02f Hordeum vulgare seedl... 206 1e-051
gb|BG300583.1|BG300583 HVSMEb0017J11f Hordeum vulgare seedl... 206 1e-051
gb|BG300865.1|BG300865 HVSMEb0018L19f Hordeum vulgare seedl... 206 1e-051
gb|BG309440.1|BG309440 HVSMEc0010E08f Hordeum vulgare seedl... 206 1e-051
gb|BG310036.1|BG310036 HVSMEc0016C04f Hordeum vulgare seedl... 206 1e-051
gb|BQ462941.1|BQ462941 HI02H24r HI Hordeum vulgare subsp. v... 206 1e-051
gb|BF624089.2|BF624089 HVSMEa0009G06f Hordeum vulgare seedl... 204 5e-051
gb|BE060552.2|BE060552 HVSMEg0012J20f Hordeum vulgare pre-a... 204 5e-051
gb|BQ460689.1|BQ460689 HA06D17r HA Hordeum vulgare subsp. v... 204 5e-051
gb|BQ467526.1|BQ467526 HS04B01r HS Hordeum vulgare subsp. v... 204 5e-051
gb|BQ467998.1|BQ467998 HR01J18r HR Hordeum vulgare subsp. v... 204 5e-051
gb|BU997685.1|BU997685 HI08L09r HI Hordeum vulgare subsp. v... 204 5e-051
gb|BU997928.1|BU997928 HI09H06r HI Hordeum vulgare subsp. v... 204 5e-051
emb|X93175.1|HVXETXEB H.vulgare mRNA for xyloglucan endotra... 204 5e-051
gb|AL450643.1|AL450643 AL450643 Hordeum vulgare Barke etiol... 202 2e-050
gb|BF631278.2|BF631278 HVSMEb0015H17f Hordeum vulgare seedl... 202 2e-050
gb|BM370804.2|BM370804 EBro04_SQ002_F05_R root, 3 week, sal... 202 2e-050
gb|BQ764817.1|BQ764817 EBca01_SQ005_A06_R carpel, pre-anthe... 202 2e-050
gb|AL450913.1|AL450913 AL450913 Hordeum vulgare Barke etiol... 198 3e-049
gb|BQ764772.1|BQ764772 EBca01_SQ004_H24_R carpel, pre-anthe... 198 3e-049
gb|CA007079.1|CA007079 HU06K21r HU Hordeum vulgare subsp. v... 198 3e-049
gb|BF260656.2|BF260656 HVSMEf0022J12f Hordeum vulgare seedl... 196 1e-048
gb|BF620035.2|BF620035 HVSMEc0011F01f Hordeum vulgare seedl... 194 5e-048
gb|BF629930.2|BF629930 HVSMEb0007F19f Hordeum vulgare seedl... 192 2e-047
gb|BF618579.2|BF618579 HVSMEc0006G01f Hordeum vulgare seedl... 192 2e-047
gb|BQ462594.1|BQ462594 HI01G12T HI Hordeum vulgare subsp. v... 192 2e-047
gb|BI960618.1|BI960618 HVSMEn0025G09f Hordeum vulgare rachi... 190 7e-047
gb|BQ461043.1|BQ461043 HE01F23r HE Hordeum vulgare subsp. v... 188 3e-046
gb|CA020574.1|CA020574 HZ36L09r HZ Hordeum vulgare subsp. v... 186 1e-045
gb|CA024504.1|CA024504 HZ49H21r HZ Hordeum vulgare subsp. v... 186 1e-045
gb|BF618456.2|BF618456 HVSMEc0005L21f Hordeum vulgare seedl... 184 5e-045
gb|CA027287.1|CA027287 HZ58H04r HZ Hordeum vulgare subsp. v... 184 5e-045
gb|BF260946.2|BF260946 HVSMEf0023F18f Hordeum vulgare seedl... 182 2e-044
gb|BI778475.2|BI778475 EBro07_SQ003_G13_R root, 3 week, red... 180 7e-044
gb|AL503674.1|AL503674 AL503674 Hordeum vulgare Barke roots... 178 3e-043
gb|BI957177.1|BI957177 HVSMEn0007P14f Hordeum vulgare rachi... 178 3e-043
gb|BE455947.3|BE455947 HVSMEg0017N10f Hordeum vulgare pre-a... 178 3e-043
gb|CA003718.1|CA003718 HS15F14r HS Hordeum vulgare subsp. v... 178 3e-043
gb|BF629221.2|BF629221 HVSMEb0010F24f Hordeum vulgare seedl... 176 1e-042
gb|BG309764.2|BG309764 HVSMEc0012H20f Hordeum vulgare seedl... 176 1e-042
gb|AL500052.1|AL500052 AL500052 Hordeum vulgare Barke etiol... 172 2e-041
gb|BF627004.2|BF627004 HVSMEb0001P03f Hordeum vulgare seedl... 172 2e-041
gb|BQ662128.1|BQ662128 HR01K20u HR Hordeum vulgare subsp. v... 172 2e-041
gb|AL500460.1|AL500460 AL500460 Hordeum vulgare Barke etiol... 170 7e-041
gb|BQ467575.1|BQ467575 HS04D13r HS Hordeum vulgare subsp. v... 170 7e-041
gb|BU997613.1|BU997613 HI08H24r HI Hordeum vulgare subsp. v... 170 7e-041
gb|CA001720.1|CA001720 HS05G04r HS Hordeum vulgare subsp. v... 170 7e-041
gb|CA003908.1|CA003908 HS15O19r HS Hordeum vulgare subsp. v... 170 7e-041
gb|CA023472.1|CA023472 HZ46F16r HZ Hordeum vulgare subsp. v... 170 7e-041
gb|BF627685.3|BF627685 HVSMEb0005I10f Hordeum vulgare seedl... 165 4e-039
gb|BF627541.2|BF627541 HVSMEb0005C03f Hordeum vulgare seedl... 161 7e-038
gb|BM369898.2|BM369898 EBem07_SQ004_O19_R embryo, 28 DPA, n... 159 3e-037
gb|BQ462553.1|BQ462553 HI01E04T HI Hordeum vulgare subsp. v... 157 1e-036
gb|CA027653.1|CA027653 HZ59J16r HZ Hordeum vulgare subsp. v... 157 1e-036
gb|BF628305.2|BF628305 HVSMEb0003K21f Hordeum vulgare seedl... 155 4e-036
gb|BQ463558.1|BQ463558 HI05L07r HI Hordeum vulgare subsp. v... 153 2e-035
gb|BI959592.1|BI959592 HVSMEn0020F05f Hordeum vulgare rachi... 149 3e-034
gb|BI960420.1|BI960420 HVSMEn0024I16f Hordeum vulgare rachi... 147 1e-033
gb|AL500129.1|AL500129 AL500129 Hordeum vulgare Barke etiol... 139 2e-031
gb|BQ462489.1|BQ462489 HI01A16T HI Hordeum vulgare subsp. v... 139 2e-031
gb|BE194552.3|BE194552 HVSMEh0085P21f Hordeum vulgare 5-45 ... 129 2e-028
gb|AW982755.3|AW982755 HVSMEg0004C03f Hordeum vulgare pre-a... 121 6e-026
gb|CA021189.1|CA021189 HZ39G03r HZ Hordeum vulgare subsp. v... 121 6e-026
gb|BQ470477.1|BQ470477 HX03B16r HX Hordeum vulgare subsp. v... 115 4e-024
gb|CA022401.1|CA022401 HZ43A12r HZ Hordeum vulgare subsp. v... 113 1e-023
gb|CB878261.1|CB878261 HP07O06T HP Hordeum vulgare subsp. v... 109 2e-022
gb|BI958106.1|BI958106 HVSMEn0013G22f Hordeum vulgare rachi... 107 9e-022
gb|BF618504.2|BF618504 HVSMEc0005O01f Hordeum vulgare seedl... 105 3e-021
gb|AL500119.1|AL500119 AL500119 Hordeum vulgare Barke etiol... 101 5e-020
gb|AL450708.1|AL450708 AL450708 Hordeum vulgare Barke etiol... 100 2e-019
gb|BF622776.2|BF622776 HVSMEa0008K20f Hordeum vulgare seedl... 100 2e-019
gb|BQ460892.1|BQ460892 HE01O03r HE Hordeum vulgare subsp. v... 100 2e-019
gb|BI780996.2|BI780996 EBma03_SQ001_B17_R maternal, 8 DPA, ... 100 2e-019
gb|CA029613.1|CA029613 HZ65L12r HZ Hordeum vulgare subsp. v... 100 2e-019
emb|X91659.1|HVEXTGENE H.vulgare mRNA for endoxyloglucan tr... 100 2e-019
gb|BF620863.2|BF620863 HVSMEa0003F12f Hordeum vulgare seedl... 98 8e-019
gb|CA028069.1|CA028069 HZ60O07r HZ Hordeum vulgare subsp. v... 96 3e-018
gb|CB877507.1|CB877507 HP05D02T HP Hordeum vulgare subsp. v... 96 3e-018
gb|BM816264.1|BM816264 HB01H02_T3.ab1 HB Hordeum vulgare su... 92 5e-017
gb|BQ471752.1|BQ471752 HV03F21r HV Hordeum vulgare subsp. v... 92 5e-017
gb|CA026923.1|CA026923 HZ57F20r HZ Hordeum vulgare subsp. v... 92 5e-017
gb|AW982395.1|AW982395 HVSMEg0003C13f Hordeum vulgare pre-a... 88 8e-016
gb|BG368127.1|BG368127 HVSMEi0015M23f Hordeum vulgare 20 DA... 88 8e-016
gb|CB877582.1|CB877582 HP05H06T HP Hordeum vulgare subsp. v... 86 3e-015
gb|AL450722.1|AL450722 AL450722 Hordeum vulgare Barke etiol... 84 1e-014
gb|BF629579.2|BF629579 HVSMEb0013G15f Hordeum vulgare seedl... 84 1e-014
gb|BF617914.1|BF617914 HVSMEc0002H15f Hordeum vulgare seedl... 80 2e-013
gb|BF629241.2|BF629241 HVSMEb0010H14f Hordeum vulgare seedl... 76 3e-012
gb|AL450919.1|AL450919 AL450919 Hordeum vulgare Barke etiol... 74 1e-011
gb|BQ756159.1|BQ756159 EBem05_SQ001_P17_R embryo, 14 DPA, n... 72 5e-011
gb|BG343074.1|BG343074 HVSMEg0001P08f Hordeum vulgare pre-a... 70 2e-010
gb|BF629710.1|BF629710 HVSMEb0013D21f Hordeum vulgare seedl... 68 7e-010
gb|BE194548.2|BE194548 HVSMEh0085P11f Hordeum vulgare 5-45 ... 68 7e-010
gb|BM444292.1|BM444292 EBem09_SQ004_L15_R embryo, 1 Day ger... 68 7e-010
gb|BU998122.1|BU998122 HI10B03r HI Hordeum vulgare subsp. v... 68 7e-010
gb|CA031564.1|CA031564 HX10H03r HX Hordeum vulgare subsp. v... 68 7e-010
gb|CB883507.1|CB883507 HQ02H12w HQ Hordeum vulgare subsp. v... 68 7e-010
gb|BF631401.2|BF631401 HVSMEb0015N09f Hordeum vulgare seedl... 66 3e-009
gb|CA016017.1|CA016017 HV11B18u HV Hordeum vulgare subsp. v... 66 3e-009
gb|AL500467.1|AL500467 AL500467 Hordeum vulgare Barke etiol... 62 5e-008
gb|BI956709.1|BI956709 HVSMEn0004O06f Hordeum vulgare rachi... 62 5e-008
gb|BI947027.1|BI947027 HVSMEl0003E20f Hordeum vulgare spike... 60 2e-007
gb|BF256789.2|BF256789 HVSMEf0011A08f Hordeum vulgare seedl... 56 3e-006
gb|AL499877.1|AL499877 AL499877 Hordeum vulgare Barke etiol... 54 1e-005
gb|BF626811.2|BF626811 HVSMEb0001G10f Hordeum vulgare seedl... 54 1e-005
gb|BF618271.2|BF618271 HVSMEc0005D16f Hordeum vulgare seedl... 54 1e-005
gb|AV914498.1|AV914498 AV914498 K. Sato unpublished cDNA li... 54 1e-005
gb|AV915915.1|AV915915 AV915915 K. Sato unpublished cDNA li... 54 1e-005
gb|AV919562.1|AV919562 AV919562 K. Sato unpublished cDNA li... 54 1e-005
gb|AV926405.1|AV926405 AV926405 K. Sato unpublished cDNA li... 54 1e-005
gb|AV931287.1|AV931287 AV931287 K. Sato unpublished cDNA li... 54 1e-005
gb|BM816265.1|BM816265 HB02B10_T3.ab1 HB Hordeum vulgare su... 54 1e-005
gb|AJ433692.1|AJ433692 AJ433692 S00002 Hordeum vulgare subs... 54 1e-005
gb|BJ465036.1|BJ465036 BJ465036 K. Sato unpublished cDNA li... 54 1e-005
gb|BJ468104.1|BJ468104 BJ468104 K. Sato unpublished cDNA li... 54 1e-005
gb|BQ468552.1|BQ468552 HM01J07T HM Hordeum vulgare subsp. v... 54 1e-005
gb|BM445218.2|BM445218 EBem09_SQ007_M07_R embryo, 1 Day ger... 54 1e-005
gb|BM100605.2|BM100605 EBma01_SQ005_L10_R maternal, 4 DPA, ... 54 1e-005
gb|CA026314.1|CA026314 HZ55I22r HZ Hordeum vulgare subsp. v... 54 1e-005
gb|CB858845.1|CB858845 HI08H24w HI Hordeum vulgare subsp. v... 54 1e-005
gb|CB882213.1|CB882213 HL01D12w HL Hordeum vulgare subsp. v... 54 1e-005
gb|CB882375.1|CB882375 HL01L03w HL Hordeum vulgare subsp. v... 54 1e-005
gb|BF620985.1|BF620985 HVSMEa0003D18f Hordeum vulgare seedl... 52 4e-005
gb|BF629934.2|BF629934 HVSMEb0007F23f Hordeum vulgare seedl... 52 4e-005
gb|BG365090.1|BG365090 HVSMEi0001D21f Hordeum vulgare 20 DA... 52 4e-005
gb|BI958667.1|BI958667 HVSMEn0016C03f Hordeum vulgare rachi... 52 4e-005
gb|AV916008.1|AV916008 AV916008 K. Sato unpublished cDNA li... 52 4e-005
gb|BM816111.1|BM816111 HC113E12_SK.ab1 HC Hordeum vulgare s... 52 4e-005
gb|BU971950.1|BU971950 HB20C15r BC Hordeum vulgare subsp. v... 52 4e-005
gb|CA008408.1|CA008408 HU10N24r HU Hordeum vulgare subsp. v... 52 4e-005
gb|CA023198.1|CA023198 HZ45I10r HZ Hordeum vulgare subsp. v... 52 4e-005
gb|CA024667.1|CA024667 HZ49P10r HZ Hordeum vulgare subsp. v... 52 4e-005
gb|CA030559.1|CA030559 HX07G17r HX Hordeum vulgare subsp. v... 52 4e-005
emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotr... 52 4e-005
gb|BI958669.1|BI958669 HVSMEn0016C05f Hordeum vulgare rachi... 50 2e-004
gb|BF257539.3|BF257539 HVSMEf0013D01f Hordeum vulgare seedl... 50 2e-004
gb|BQ470845.1|BQ470845 HX04D09r HX Hordeum vulgare subsp. v... 50 2e-004
gb|BQ660118.1|BQ660118 HI01A16w HI Hordeum vulgare subsp. v... 50 2e-004
gb|BU988965.1|BU988965 HF19F01r HF Hordeum vulgare subsp. v... 50 2e-004
gb|BF622057.1|BF622057 HVSMEa0001K09f Hordeum vulgare seedl... 48 7e-004
gb|AJ460708.1|AJ460708 AJ460708 S00002 Hordeum vulgare subs... 48 7e-004
gb|AJ460709.1|AJ460709 AJ460709 S00002 Hordeum vulgare subs... 48 7e-004
gb|BQ468019.1|BQ468019 HR01K20r HR Hordeum vulgare subsp. v... 48 7e-004
gb|BQ660837.1|BQ660837 HI05L07u HI Hordeum vulgare subsp. v... 48 7e-004
gb|BQ662795.1|BQ662795 HS04D13u HS Hordeum vulgare subsp. v... 48 7e-004
gb|BI776827.2|BI776827 EBpi03_SQ001_B04_R pistil, 4 DPA, no... 48 7e-004
gb|CA001491.1|CA001491 HS17J24u HS Hordeum vulgare subsp. v... 48 7e-004
gb|CB877410.1|CB877410 HP04M22T HP Hordeum vulgare subsp. v... 48 7e-004
gb|CB877798.1|CB877798 HP06D15T HP Hordeum vulgare subsp. v... 48 7e-004
gb|CB878098.1|CB878098 HP07F05T HP Hordeum vulgare subsp. v... 48 7e-004
gb|BE422297.1|BE422297 HWM022cF.08r ITEC HWM Barley Leaf Li... 46 0.003
gb|AL500168.1|AL500168 AL500168 Hordeum vulgare Barke etiol... 46 0.003
gb|AL501717.1|AL501717 AL501717 Hordeum vulgare Barke roots... 46 0.003
gb|BQ469314.1|BQ469314 HM04C11r HM Hordeum vulgare subsp. v... 46 0.003
gb|BQ661581.1|BQ661581 HM04C11u HM Hordeum vulgare subsp. v... 46 0.003
gb|BQ665345.1|BQ665345 HX03B16u HX Hordeum vulgare subsp. v... 46 0.003
gb|BQ759379.1|BQ759379 EBpi01_SQ004_H12_R pistil, 1 DPA, no... 46 0.003
gb|BQ763770.1|BQ763770 EBro03_SQ005_J09_R root, 3 week, wat... 46 0.003
gb|BQ767223.1|BQ767223 EBro08_SQ008_F10_R root, 3 week, dro... 46 0.003
gb|CD663930.1|CD663930 UCRHV18_07ae11_b1 Drought-stressed D... 46 0.003
gb|BI958113.1|BI958113 HVSMEn0013H08f Hordeum vulgare rachi... 44 0.011
gb|BM097637.2|BM097637 EBem04_SQ002_E13_R embryo, 12 DPA, n... 44 0.011
gb|BM377806.2|BM377806 EBem04_SQ004_D21_R embryo, 12 DPA, n... 44 0.011
gb|BQ763335.1|BQ763335 EBro02_SQ008_B04_R root, 3 week, hyd... 44 0.011
gb|CA029997.1|CA029997 HX05M19r HX Hordeum vulgare subsp. v... 44 0.011
gb|CA031859.1|CA031859 HX11F08r HX Hordeum vulgare subsp. v... 44 0.011
gb|CA031894.1|CA031894 HX11G24r HX Hordeum vulgare subsp. v... 44 0.011
gb|AL501095.1|AL501095 AL501095 Hordeum vulgare Barke roots... 42 0.043
gb|AL507776.1|AL507776 AL507776 Hordeum vulgare Barke devel... 42 0.043
gb|BF256171.2|BF256171 HVSMEf0008P16f Hordeum vulgare seedl... 42 0.043
gb|BG415027.2|BG415027 HVSMEk0004M03f Hordeum vulgare testa... 42 0.043
gb|AJ435634.1|AJ435634 AJ435634 S00002 Hordeum vulgare subs... 42 0.043
gb|BJ449615.1|BJ449615 BJ449615 K. Sato unpublished cDNA li... 42 0.043
gb|BJ459475.1|BJ459475 BJ459475 K. Sato unpublished cDNA li... 42 0.043
gb|BQ660848.1|BQ660848 HI05M03u HI Hordeum vulgare subsp. v... 42 0.043
gb|BQ661350.1|BQ661350 HM03C01u HM Hordeum vulgare subsp. v... 42 0.043
gb|BQ664092.1|BQ664092 HV01L14w HV Hordeum vulgare subsp. v... 42 0.043
gb|BQ762342.1|BQ762342 EBro01_SQ005_F13_R root, 3 week, hyd... 42 0.043
gb|BU998797.1|BU998797 HI12D05r HI Hordeum vulgare subsp. v... 42 0.043
gb|CA008176.1|CA008176 HU10C03r HU Hordeum vulgare subsp. v... 42 0.043
gb|CB874550.1|CB874550 HX05J18w HX Hordeum vulgare subsp. v... 42 0.043
gb|BG299451.1|BG299451 HVSMEa0020B13f Hordeum vulgare seedl... 40 0.17
gb|BF621061.3|BF621061 HVSMEa0003N10f Hordeum vulgare seedl... 40 0.17
gb|BF630403.2|BF630403 HVSMEb0009B18f Hordeum vulgare seedl... 40 0.17
gb|BF630623.2|BF630623 HVSMEb0012E18f Hordeum vulgare seedl... 40 0.17
gb|BF631048.2|BF631048 HVSMEb0014N08f Hordeum vulgare seedl... 40 0.17
gb|BF631110.2|BF631110 HVSMEb0015A04f Hordeum vulgare seedl... 40 0.17
gb|BG300161.1|BG300161 HVSMEb0010K02f Hordeum vulgare seedl... 40 0.17
gb|BF618866.2|BF618866 HVSMEc0008D05f Hordeum vulgare seedl... 40 0.17
gb|BF620505.2|BF620505 HVSMEc0020B13f Hordeum vulgare seedl... 40 0.17
gb|BF620598.2|BF620598 HVSMEc0020F14f Hordeum vulgare seedl... 40 0.17
gb|BG309798.1|BG309798 HVSMEc0012L20f Hordeum vulgare seedl... 40 0.17
gb|BI949087.1|BI949087 HVSMEl0012F05f Hordeum vulgare spike... 40 0.17
gb|BI956297.1|BI956297 HVSMEn0002B20f Hordeum vulgare rachi... 40 0.17
gb|BI956578.1|BI956578 HVSMEn0004D19f Hordeum vulgare rachi... 40 0.17
gb|BI956580.1|BI956580 HVSMEn0004E02f Hordeum vulgare rachi... 40 0.17
gb|BF263162.2|BF263162 HV_CEa0006A01f Hordeum vulgare seedl... 40 0.17
gb|BI959818.1|BI959818 HVSMEn0021L18f Hordeum vulgare rachi... 40 0.17
gb|BG301313.2|BG301313 HVSMEb0020K16f Hordeum vulgare seedl... 40 0.17
gb|BE454828.3|BE454828 HVSMEh0095D10f Hordeum vulgare 5-45 ... 40 0.17
gb|BE455175.3|BE455175 HVSMEh0096H13f Hordeum vulgare 5-45 ... 40 0.17
gb|AV922899.1|AV922899 AV922899 K. Sato unpublished cDNA li... 40 0.17
gb|AV924203.1|AV924203 AV924203 K. Sato unpublished cDNA li... 40 0.17
gb|AV925293.1|AV925293 AV925293 K. Sato unpublished cDNA li... 40 0.17
gb|AV927108.1|AV927108 AV927108 K. Sato unpublished cDNA li... 40 0.17
gb|BJ463118.1|BJ463118 BJ463118 K. Sato unpublished cDNA li... 40 0.17
gb|BQ459051.1|BQ459051 HA02H07r HA Hordeum vulgare subsp. v... 40 0.17
gb|BQ460993.1|BQ460993 HE01I24r HE Hordeum vulgare subsp. v... 40 0.17
gb|BQ662762.1|BQ662762 HS04B01u HS Hordeum vulgare subsp. v... 40 0.17
gb|BI777299.2|BI777299 EBro03_SQ002_M15_R root, 3 week, wat... 40 0.17
gb|BI778147.2|BI778147 EBro07_SQ002_F18_R root, 3 week, red... 40 0.17
gb|CD663551.1|CD663551 UCRHV18_05dd11_b1 Drought-stressed D... 40 0.17
gb|AY551428.1| Hordeum vulgare subsp. vulgare GA 20-oxidase... 40 0.17
emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotra... 40 0.17
>gb|BF267606.1|BF267606 HV_CEa0018G10f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0018G10f, mRNA sequence
Length = 531
Score = 450 bits (227), Expect = e-125
Identities = 365/411 (88%)
Strand = Plus / Plus
Query: 183 cggcaacttctaccaggacgtggacatcacctggggcgacggccgcggcaagatcctcga 242
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 7 cggcaacttctaccaggacgtggacatcacgtggggcgacgggcgcggcaagatcctcgg 66
Query: 243 caacggccagctcctgacgctgtccatggacaggtcctccggctcgggcttccagtccaa 302
| |||| | ||||| |||||||| | |||||| |||||||||| || |||||||||||
Sbjct: 67 cggcggcgacctcctcacgctgtcgctcgacagggcctccggctccgggttccagtccaa 126
Query: 303 ggcccagtacctctacggccgcttcgacatgcagctcaagctcgtcccgggggactccgc 362
| ||||||||| ||||||||||||||||||||| ||||||||||||| || ||||||||
Sbjct: 127 gaaccagtacctgtacggccgcttcgacatgcagatcaagctcgtccccggcgactccgc 186
Query: 363 cggcaccgtcgccaccttctatctttcgtcgcagggttcgcagcacgacgagatcgactt 422
||||||||||||||| ||||| || ||||||||||| ||| ||||||||||||||||||
Sbjct: 187 cggcaccgtcgccactttctacctgtcgtcgcaggggtcggcgcacgacgagatcgactt 246
Query: 423 cgagttcctggggaacgcgagcggggagccgtacacggtgcacacgaacgtgtacagcca 482
|||||||||||| |||||||||||| |||| |||||||||||||| ||||||||||||||
Sbjct: 247 cgagttcctgggcaacgcgagcgggcagccctacacggtgcacaccaacgtgtacagcca 306
Query: 483 ggggaagggcgggcgggagcagcagttccggatgtggttcgaccccacggcggccttcca 542
||| |||||||| ||||||||||||||||| ||||||||||||||||| | | ||||||
Sbjct: 307 gggcaagggcggccgggagcagcagttccgcatgtggttcgaccccaccgtcgacttcca 366
Query: 543 cgcctactccgtgctgtggaaccccgcccacgtcgtcttctacgtggacgg 593
| |||||||||| || ||||||||| | ||| | | ||||||||||||||
Sbjct: 367 cacctactccgttctctggaaccccacacacatactgttctacgtggacgg 417
Score = 63.9 bits (32), Expect = 1e-008
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 656 cgatgcgggtgtacgccagcgtgtgggacgcggaggagtgggccacgc 703
||||| |||||||||| ||||||||||||||||| |||||||| ||||
Sbjct: 483 cgatgagggtgtacgcgagcgtgtgggacgcggaagagtgggcgacgc 530
>gb|CA019178.1|CA019178 HV11B18r HV Hordeum vulgare subsp. vulgare cDNA clone HV11B18
5-PRIME, mRNA sequence
Length = 532
Score = 446 bits (225), Expect = e-124
Identities = 345/385 (89%)
Strand = Plus / Plus
Query: 183 cggcaacttctaccaggacgtggacatcacctggggcgacggccgcggcaagatcctcga 242
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 132 cggcaacttctaccaggacgtggacatcacgtggggcgacgggcgcggcaagatcctcgg 191
Query: 243 caacggccagctcctgacgctgtccatggacaggtcctccggctcgggcttccagtccaa 302
| |||| | ||||| |||||||| | |||||| |||||||||| || |||||||||||
Sbjct: 192 cggcggcgacctcctcacgctgtcgctcgacagggcctccggctccgggttccagtccaa 251
Query: 303 ggcccagtacctctacggccgcttcgacatgcagctcaagctcgtcccgggggactccgc 362
| ||||||||| ||||||||||||||||||||| ||||||||||||| || ||||||||
Sbjct: 252 gaaccagtacctgtacggccgcttcgacatgcagatcaagctcgtccccggcgactccgc 311
Query: 363 cggcaccgtcgccaccttctatctttcgtcgcagggttcgcagcacgacgagatcgactt 422
||||||||||||||| ||||| || ||||||||||| ||| ||||||||||||||||||
Sbjct: 312 cggcaccgtcgccactttctacctgtcgtcgcaggggtcggcgcacgacgagatcgactt 371
Query: 423 cgagttcctggggaacgcgagcggggagccgtacacggtgcacacgaacgtgtacagcca 482
|||||||||||| |||||||||| | |||| |||||||||||||| ||||||||||||||
Sbjct: 372 cgagttcctgggcaacgcgagcgagcagccctacacggtgcacaccaacgtgtacagcca 431
Query: 483 ggggaagggcgggcgggagcagcagttccggatgtggttcgaccccacggcggccttcca 542
||| |||||||| ||||||||||||||||| ||||||||||||||||| || | ||||||
Sbjct: 432 gggcaagggcggccgggagcagcagttccgcatgtggttcgaccccaccgccgacttcca 491
Query: 543 cgcctactccgtgctgtggaacccc 567
| |||||||||| || |||||||||
Sbjct: 492 cacctactccgtcctctggaacccc 516
>gb|BE216242.1|BE216242 HV_CEb0009P07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0009P07f, mRNA sequence
Length = 573
Score = 442 bits (223), Expect = e-122
Identities = 364/411 (88%)
Strand = Plus / Plus
Query: 183 cggcaacttctaccaggacgtggacatcacctggggcgacggccgcggcaagatcctcga 242
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 139 cggcaacttctaccaggacgtggacatcacgtggggcgacgggcgcggcaagatcctcgg 198
Query: 243 caacggccagctcctgacgctgtccatggacaggtcctccggctcgggcttccagtccaa 302
| |||| | ||||| |||||||| | |||||| |||||||||| || |||||||||||
Sbjct: 199 cggcggcgacctcctcacgctgtcgctcgacagggcctccggctccgggttccagtccaa 258
Query: 303 ggcccagtacctctacggccgcttcgacatgcagctcaagctcgtcccgggggactccgc 362
| ||||||||| ||||||||||||||||||||| ||||||||||||| || ||||||||
Sbjct: 259 gaaccagtacctgtacggccgcttcgacatgcagatcaagctcgtccccggcgactccgc 318
Query: 363 cggcaccgtcgccaccttctatctttcgtcgcagggttcgcagcacgacgagatcgactt 422
||||||||||||||| ||||| || ||||||||||| ||| ||||||||||||||||||
Sbjct: 319 cggcaccgtcgccactttctacctgtcgtcgcaggggtcggcgcacgacgagatcgactt 378
Query: 423 cgagttcctggggaacgcgagcggggagccgtacacggtgcacacgaacgtgtacagcca 482
|||||||||||| |||||||||||| |||| |||||||||||||| ||||||||||||||
Sbjct: 379 cgagttcctgggcaacgcgagcgggcagccctacacggtgcacaccaacgtgtacagcca 438
Query: 483 ggggaagggcgggcgggagcagcagttccggatgtggttcgaccccacggcggccttcca 542
||| |||||||| ||||||||||||||||| ||||||||||||||||| | | ||| ||
Sbjct: 439 gggcaagggcggccgggagcagcagttccgcatgtggttcgaccccaccggcgactttca 498
Query: 543 cgcctactccgtgctgtggaaccccgcccacgtcgtcttctacgtggacgg 593
| |||| ||||| || ||||||||| | ||| || | ||||||||||||||
Sbjct: 499 cacctaatccgttctctggaaccccacacacatcctgttctacgtggacgg 549
>gb|BI953155.1|BI953155 HVSMEm0011G01f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0011G01f, mRNA sequence
Length = 831
Score = 406 bits (205), Expect = e-112
Identities = 340/385 (88%)
Strand = Plus / Plus
Query: 183 cggcaacttctaccaggacgtggacatcacctggggcgacggccgcggcaagatcctcga 242
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 118 cggcaacttctaccaggacgtggacatcacgtggggcgacgggcgcggcaagatcctcgg 177
Query: 243 caacggccagctcctgacgctgtccatggacaggtcctccggctcgggcttccagtccaa 302
| |||| | ||||| |||||||| | |||||| |||||||||| || |||||||||||
Sbjct: 178 cggcggcgacctcctcacgctgtcgctcgacagggcctccggctccgggttccagtccaa 237
Query: 303 ggcccagtacctctacggccgcttcgacatgcagctcaagctcgtcccgggggactccgc 362
| ||||||||| ||||||||||||||||||||| ||||||||||||| || ||||||||
Sbjct: 238 gaaccagtacctgtacggccgcttcgacatgcagatcaagctcgtccccggcgactccgc 297
Query: 363 cggcaccgtcgccaccttctatctttcgtcgcagggttcgcagcacgacgagatcgactt 422
||||||||||||||| ||||| || ||||||||||| ||| ||||||||||||||||||
Sbjct: 298 cggcaccgtcgccactttctacctgtcgtcgcaggggtcggcgcacgacgagatcgactt 357
Query: 423 cgagttcctggggaacgcgagcggggagccgtacacggtgcacacgaacgtgtacagcca 482
|||||||||||| |||||||||||| |||| |||||||||||||| ||||||||||||||
Sbjct: 358 cgagttcctgggcaacgcgagcgggcagccctacacggtgcacaccaacgtgtacagcca 417
Query: 483 ggggaagggcgggcgggagcagcagttccggatgtggttcgaccccacggcggccttcca 542
||| |||||||| ||||||||||| || | ||||||| | |||||||| | | ||| ||
Sbjct: 418 gggcaagggcggacgggagcagcaatttctgatgtgggttgaccccaccgacgactttca 477
Query: 543 cgcctactccgtgctgtggaacccc 567
| |||||| |||||| |||||||||
Sbjct: 478 cacctacttcgtgctttggaacccc 502
>gb|BI954358.1|BI954358 HVSMEm0017G17f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0017G17f, mRNA sequence
Length = 695
Score = 398 bits (201), Expect = e-109
Identities = 339/385 (88%)
Strand = Plus / Plus
Query: 183 cggcaacttctaccaggacgtggacatcacctggggcgacggccgcggcaagatcctcga 242
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 117 cggcaacttctaccaggacgtggacatcacgtggggcgacgggcgcggcaagatcctcgg 176
Query: 243 caacggccagctcctgacgctgtccatggacaggtcctccggctcgggcttccagtccaa 302
| |||| | ||||| |||||||| | |||||| |||||||||| || |||||||||||
Sbjct: 177 cggcggcgacctcctcacgctgtcgctcgacagggcctccggctccgggttccagtccaa 236
Query: 303 ggcccagtacctctacggccgcttcgacatgcagctcaagctcgtcccgggggactccgc 362
| ||||||||| ||||| ||||||||||||||| ||||||||||||| || ||||||||
Sbjct: 237 gaaccagtacctgtacgggcgcttcgacatgcagatcaagctcgtccccggcgactccgc 296
Query: 363 cggcaccgtcgccaccttctatctttcgtcgcagggttcgcagcacgacgagatcgactt 422
||||||||||||||| ||||| || |||||||| || ||| ||||||||||||||||||
Sbjct: 297 cggcaccgtcgccactttctacctgtcgtcgcaagggtcggcgcacgacgagatcgactt 356
Query: 423 cgagttcctggggaacgcgagcggggagccgtacacggtgcacacgaacgtgtacagcca 482
|||||||||||| |||||||||||| |||| |||||||||||||| ||||||||||||||
Sbjct: 357 cgagttcctgggcaacgcgagcgggcagccctacacggtgcacaccaacgtgtacagcca 416
Query: 483 ggggaagggcgggcgggagcagcagttccggatgtggttcgaccccacggcggccttcca 542
||| |||||||| ||||||||||| || | ||||||||||||||||| || | ||| ||
Sbjct: 417 gggcaagggcggccgggagcagcatttacccatgtggttcgaccccaccgccgactttca 476
Query: 543 cgcctactccgtgctgtggaacccc 567
| |||||||||| || | |||||||
Sbjct: 477 cacctactccgttctctagaacccc 501
>gb|BI956177.1|BI956177 HVSMEm0025O16f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0025O16f, mRNA sequence
Length = 686
Score = 317 bits (160), Expect = 5e-085
Identities = 296/340 (87%), Gaps = 1/340 (0%)
Strand = Plus / Plus
Query: 183 cggcaacttctaccaggacgtggacatcacctggggcgacggccgcggcaagatcctcga 242
|||||||||||||||||||||||||||||| ||||||||||| |||||||||| | |
Sbjct: 115 cggcaacttctaccaggacgtggacatcacgtggggcgacgggcgcggcaagagcggggg 174
Query: 243 caacggccagctcctgacgctgtccatggacaggtcctccggctcgggcttccagtccaa 302
| |||| | ||||| |||||||| | |||||| |||||||||| || |||||||||||
Sbjct: 175 cggcggcgacctcctcacgctgtcgctcgacagggcctccggctccgggttccagtccaa 234
Query: 303 ggcccagtacctctacggccgcttcgacatgcagctcaagctcgtcccgggggactccgc 362
| ||||||||| ||||||||||||||||||||| ||||||||||||| || ||||||||
Sbjct: 235 gaaccagtacctgtacggccgcttcgacatgcagatcaagctcgtccccggcgactccgc 294
Query: 363 cggcaccgtcgccaccttctatctttcgtcgcagggttcgcagcacgacgagatcgactt 422
||||||||||||||| ||||| || ||||||||||| ||| ||||||||||||||||||
Sbjct: 295 cggcaccgtcgccactttctacctgtcgtcgcaggggtcggcgcacgacgagatcgactt 354
Query: 423 cgagttcctggggaacgcgagcggggagccgtacacggtgcacacgaacgtgtacagcca 482
| |||||||||| |||||||||||| |||| ||||||| |||||| |||||||||| |||
Sbjct: 355 caagttcctgggcaacgcgagcgggcagccctacacggagcacaccaacgtgtacaacca 414
Query: 483 ggggaagg-gcgggcgggagcagcagttccggatgtggtt 521
|| |||| |||| ||||| ||||| ||||| ||||||||
Sbjct: 415 aggcaaggagcggacgggaacagcacttccgcatgtggtt 454
>gb|BG309189.1|BG309189 HVSMEc0004M02f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0004M02f, mRNA sequence
Length = 862
Score = 246 bits (124), Expect = 1e-063
Identities = 196/220 (89%)
Strand = Plus / Plus
Query: 374 ccaccttctatctttcgtcgcagggttcgcagcacgacgagatcgacttcgagttcctgg 433
|||| ||||| || ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 1 ccactttctacctgtcgtcgcaggggtcggcgcacgacgagatcgacttcgagttcctgg 60
Query: 434 ggaacgcgagcggggagccgtacacggtgcacacgaacgtgtacagccaggggaagggcg 493
| |||||||||||| |||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct: 61 gcaacgcgagcgggcagccctacacggtgcacaccaacgtgtacagccagggcaagggcg 120
Query: 494 ggcgggagcagcagttccggatgtggttcgaccccacggcggccttccacgcctactccg 553
| ||||||||||||||||| ||||||||||||||||| || | ||||||| |||||||||
Sbjct: 121 gccgggagcagcagttccgcatgtggttcgaccccaccgccgacttccacacctactccg 180
Query: 554 tgctgtggaaccccgcccacgtcgtcttctacgtggacgg 593
| || ||||||||| | ||| || | ||||||||||||||
Sbjct: 181 tcctctggaaccccacacacatcctgttctacgtggacgg 220
>gb|BF627738.2|BF627738 HVSMEb0005K17f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0005K17f, mRNA sequence
Length = 831
Score = 214 bits (108), Expect = 5e-054
Identities = 267/320 (83%)
Strand = Plus / Plus
Query: 211 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctgtccatg 270
|||||||| ||||| ||||||||||||||| |||| |||||||| ||||||||| | ||
Sbjct: 137 acctggggtgacgggcgcggcaagatcctcaacaatggccagctgctgacgctgggcctg 196
Query: 271 gacaggtcctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgac 330
|||| | ||||||||| || |||||||||||| | ||||||||| |||| |||||
Sbjct: 197 gacaaggtctccggctccgggttccagtccaagcacgagtacctcttcggcaagatcgac 256
Query: 331 atgcagctcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcg 390
||||| |||||||||||||| || |||||||||||||||| || ||| ||| || |||
Sbjct: 257 atgcaactcaagctcgtccccggcaactccgccggcaccgtaaccgcctactacctgtcg 316
Query: 391 tcgcagggttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggag 450
||||||||| | |||||||||||||||||||||||||||||| |||| | ||| |||
Sbjct: 317 tcgcagggtcctacgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgag 376
Query: 451 ccgtacacggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttc 510
|| |||||| ||||||| ||||||| || |||||| ||||| ||||||||||||||||
Sbjct: 377 ccctacacgctgcacaccaacgtgttcacgcaggggcagggccagcgggagcagcagttc 436
Query: 511 cggatgtggttcgaccccac 530
|| | |||||||| |||||
Sbjct: 437 cgcctctggttcgatcccac 456
>gb|BQ759958.1|BQ759958 EBpi05_SQ004_P23_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_P23 5', mRNA sequence
Length = 537
Score = 214 bits (108), Expect = 5e-054
Identities = 267/320 (83%)
Strand = Plus / Plus
Query: 211 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctgtccatg 270
|||||||| ||||| ||||||||||||||| |||| |||||||| ||||||||| | ||
Sbjct: 143 acctggggtgacgggcgcggcaagatcctcaacaatggccagctgctgacgctgggcctg 202
Query: 271 gacaggtcctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgac 330
|||| | ||||||||| || |||||||||||| | ||||||||| |||| |||||
Sbjct: 203 gacaaggtctccggctccgggttccagtccaagcacgagtacctcttcggcaagatcgac 262
Query: 331 atgcagctcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcg 390
||||| |||||||||||||| || |||||||||||||||| || ||| ||| || |||
Sbjct: 263 atgcaactcaagctcgtccccggcaactccgccggcaccgtaaccgcctactacctgtcg 322
Query: 391 tcgcagggttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggag 450
||||||||| | |||||||||||||||||||||||||||||| |||| | ||| |||
Sbjct: 323 tcgcagggtcctacgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgag 382
Query: 451 ccgtacacggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttc 510
|| |||||| ||||||| ||||||| || |||||| ||||| ||||||||||||||||
Sbjct: 383 ccctacacgctgcacaccaacgtgttcacgcaggggcagggccagcgggagcagcagttc 442
Query: 511 cggatgtggttcgaccccac 530
|| | |||||||| |||||
Sbjct: 443 cgcctctggttcgatcccac 462
>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
(XEA)
Length = 1174
Score = 214 bits (108), Expect = 5e-054
Identities = 267/320 (83%)
Strand = Plus / Plus
Query: 211 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctgtccatg 270
|||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 136 acctggggtgacgggcgcggcaagatcctcaacaacggccagctcctgacgctgggactg 195
Query: 271 gacaggtcctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgac 330
|||| | ||||||||| || |||||||||||| | ||||||||| |||| |||||
Sbjct: 196 gacaaggtctccggctccgggttccagtccaagcacgagtacctcttcggcaagatcgac 255
Query: 331 atgcagctcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcg 390
|||||||||||||||||||| || |||| ||||||||||| || ||| ||| || |||
Sbjct: 256 atgcagctcaagctcgtccccggcaactctgccggcaccgtaaccgcctactacctgtcg 315
Query: 391 tcgcagggttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggag 450
||||||||| || |||||||||||||||||||||||||||||| |||| | ||| |||
Sbjct: 316 tcgcagggtccgacgcacgacgagatcgacttcgagttcctgggaaacgtcaccggcgag 375
Query: 451 ccgtacacggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttc 510
|| |||||| ||||||| ||||||| || |||||| ||||| |||||||| ||||||
Sbjct: 376 ccctacacgctgcacaccaacgtgttcacgcaggggcagggccaacgggagcaacagttc 435
Query: 511 cggatgtggttcgaccccac 530
|| | |||||||| |||||
Sbjct: 436 cgcctctggttcgatcccac 455
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 883 tacatgatctacaactactgcac 905
|||||||||||||||||||||||
Sbjct: 856 tacatgatctacaactactgcac 878
>gb|BE195774.3|BE195774 HVSMEh0090G19f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0090G19f, mRNA sequence
Length = 921
Score = 208 bits (105), Expect = 3e-052
Identities = 266/320 (83%)
Strand = Plus / Plus
Query: 211 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctgtccatg 270
|||||||| ||||| ||||||||||||||| |||| |||||||| ||||||||| | ||
Sbjct: 141 acctggggtgacgggcgcggcaagatcctcaacaatggccagctgctgacgctgggcctg 200
Query: 271 gacaggtcctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgac 330
|||| | ||||||||| || |||||||||||| | ||||||||| |||| |||||
Sbjct: 201 gacaaggtctccggctccgggttccagtccaagcacgagtacctcttcggcaagatcgac 260
Query: 331 atgcagctcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcg 390
||||| |||||||||||||| || |||||||||||||||| || ||| ||| || |||
Sbjct: 261 atgcaactcaagctcgtccccggcaactccgccggcaccgtaaccgcctactacctgtcg 320
Query: 391 tcgcagggttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggag 450
||||||||| | |||||||||||||||||||||||||||||| |||| | ||| |||
Sbjct: 321 tcgcagggtcctacgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgag 380
Query: 451 ccgtacacggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttc 510
|| |||||| ||||||| ||||||| || || ||| ||||| ||||||||||||||||
Sbjct: 381 ccctacacgctgcacaccaacgtgttcacgcangggcagggccagcgggagcagcagttc 440
Query: 511 cggatgtggttcgaccccac 530
|| | |||||||| |||||
Sbjct: 441 cgcctctggttcgatcccac 460
>gb|BF626739.2|BF626739 HVSMEb0001D16f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0001D16f, mRNA sequence
Length = 844
Score = 206 bits (104), Expect = 1e-051
Identities = 266/320 (83%)
Strand = Plus / Plus
Query: 211 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctgtccatg 270
|||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 142 acctggggtgacgggcgcggcaagatcctcaacaacggccagctcctgacgctgggactg 201
Query: 271 gacaggtcctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgac 330
|||| | ||||||||| || |||||||||||| | ||||||||| |||| |||||
Sbjct: 202 gacaaggtctccggctccgggttccagtccaagcacgagtacctcttcggcaagatcgac 261
Query: 331 atgcagctcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcg 390
|||||||||||||||||||| || |||| ||||||||||| || ||| ||| || |||
Sbjct: 262 atgcagctcaagctcgtccccggcaactctgccggcaccgtaaccgcctactacctgtcg 321
Query: 391 tcgcagggttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggag 450
|||||||| || |||||||||||||||||||||||||||||| |||| | ||| |||
Sbjct: 322 tcgcaggggccgacgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgag 381
Query: 451 ccgtacacggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttc 510
|| |||||| ||||||| ||||||| || |||||| ||||| |||||||| ||||||
Sbjct: 382 ccctacacgctgcacaccaacgtgttcacgcaggggcagggccaacgggagcaacagttc 441
Query: 511 cggatgtggttcgaccccac 530
|| | |||||||| |||||
Sbjct: 442 cgcctctggttcgatcccac 461
>gb|BF628380.2|BF628380 HVSMEb0003O02f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0003O02f, mRNA sequence
Length = 507
Score = 206 bits (104), Expect = 1e-051
Identities = 266/320 (83%)
Strand = Plus / Plus
Query: 211 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctgtccatg 270
|||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 139 acctggggtgacgggcgcggcaagatcctcaacaacggccagctcctgacgctgggactg 198
Query: 271 gacaggtcctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgac 330
|||| | ||||||||| || |||||||||||| | ||||||||| |||| |||||
Sbjct: 199 gacaaggtctccggctccgggttccagtccaagcacgagtacctcttcggcaagatcgac 258
Query: 331 atgcagctcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcg 390
|||||||||||||||||||| || |||| ||||||||||| || ||| ||| || |||
Sbjct: 259 atgcagctcaagctcgtccccggcaactctgccggcaccgtaaccgcctactacctgtcg 318
Query: 391 tcgcagggttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggag 450
|||||||| || |||||||||||||||||||||||||||||| |||| | ||| |||
Sbjct: 319 tcgcaggggccgacgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgag 378
Query: 451 ccgtacacggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttc 510
|| |||||| ||||||| ||||||| || |||||| ||||| |||||||| ||||||
Sbjct: 379 ccctacacgctgcacaccaacgtgttcacgcaggggcagggccaacgggagcaacagttc 438
Query: 511 cggatgtggttcgaccccac 530
|| | |||||||| |||||
Sbjct: 439 cgcctctggttcgatcccac 458
>gb|BG300583.1|BG300583 HVSMEb0017J11f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017J11f, mRNA sequence
Length = 876
Score = 206 bits (104), Expect = 1e-051
Identities = 266/320 (83%)
Strand = Plus / Plus
Query: 211 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctgtccatg 270
|||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 130 acctggggtgacgggcgcggcaagatcctcaacaacggccagctcctgacgctgggactg 189
Query: 271 gacaggtcctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgac 330
|||| | ||||||||| || |||||||||||| | ||||||||| |||| |||||
Sbjct: 190 gacaaggtctccggctccgggttccagtccaagcacgagtacctcttcggcaagatcgac 249
Query: 331 atgcagctcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcg 390
|||||||||||||||||||| || |||| ||||||||||| || ||| ||| || |||
Sbjct: 250 atgcagctcaagctcgtccccggcaactctgccggcaccgtaaccgcctactacctgtcg 309
Query: 391 tcgcagggttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggag 450
|||||||| || |||||||||||||||||||||||||||||| |||| | ||| |||
Sbjct: 310 tcgcaggggccgacgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgag 369
Query: 451 ccgtacacggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttc 510
|| |||||| ||||||| ||||||| || |||||| ||||| |||||||| ||||||
Sbjct: 370 ccctacacgctgcacaccaacgtgttcacgcaggggcagggccaacgggagcaacagttc 429
Query: 511 cggatgtggttcgaccccac 530
|| | |||||||| |||||
Sbjct: 430 cgcctctggttcgatcccac 449
>gb|BG300865.1|BG300865 HVSMEb0018L19f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0018L19f, mRNA sequence
Length = 607
Score = 206 bits (104), Expect = 1e-051
Identities = 266/320 (83%)
Strand = Plus / Plus
Query: 211 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctgtccatg 270
|||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 121 acctggggtgacgggcgcggcaagatcctcaacaacggccagctcctgacgctgggactg 180
Query: 271 gacaggtcctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgac 330
|||| | ||||||||| || |||||||||||| | ||||||||| |||| |||||
Sbjct: 181 gacaaggtctccggctccgggttccagtccaagcacgagtacctcttcggcaagatcgac 240
Query: 331 atgcagctcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcg 390
|||||||||||||||||||| || |||| ||||||||||| || ||| ||| || |||
Sbjct: 241 atgcagctcaagctcgtccccggcaactctgccggcaccgtaaccgcctactacctgtcg 300
Query: 391 tcgcagggttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggag 450
|||||||| || |||||||||||||||||||||||||||||| |||| | ||| |||
Sbjct: 301 tcgcaggggccgacgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgag 360
Query: 451 ccgtacacggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttc 510
|| |||||| ||||||| ||||||| || |||||| ||||| |||||||| ||||||
Sbjct: 361 ccctacacgctgcacaccaacgtgttcacgcaggggcagggccaacgggagcaacagttc 420
Query: 511 cggatgtggttcgaccccac 530
|| | |||||||| |||||
Sbjct: 421 cgcctctggttcgatcccac 440
>gb|BG309440.1|BG309440 HVSMEc0010E08f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0010E08f, mRNA sequence
Length = 788
Score = 206 bits (104), Expect = 1e-051
Identities = 266/320 (83%)
Strand = Plus / Plus
Query: 211 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctgtccatg 270
|||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 118 acctggggtgacgggcgcggcaagatcctcaacaacggccagctcctgacgctgggactg 177
Query: 271 gacaggtcctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgac 330
|||| | ||||||||| || |||||||||||| | ||||||||| |||| |||||
Sbjct: 178 gacaaggtctccggctccgggttccagtccaagcacgagtacctcttcggcaagatcgac 237
Query: 331 atgcagctcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcg 390
|||||||||||||||||||| || |||| ||||||||||| || ||| ||| || |||
Sbjct: 238 atgcagctcaagctcgtccccggcaactctgccggcaccgtaaccgcctactacctgtcg 297
Query: 391 tcgcagggttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggag 450
|||||||| || |||||||||||||||||||||||||||||| |||| | ||| |||
Sbjct: 298 tcgcaggggccgacgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgag 357
Query: 451 ccgtacacggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttc 510
|| |||||| ||||||| ||||||| || |||||| ||||| |||||||| ||||||
Sbjct: 358 ccctacacgctgcacaccaacgtgttcacgcaggggcagggccaacgggagcaacagttc 417
Query: 511 cggatgtggttcgaccccac 530
|| | |||||||| |||||
Sbjct: 418 cgcctctggttcgatcccac 437
>gb|BG310036.1|BG310036 HVSMEc0016C04f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016C04f, mRNA sequence
Length = 831
Score = 206 bits (104), Expect = 1e-051
Identities = 266/320 (83%)
Strand = Plus / Plus
Query: 211 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctgtccatg 270
|||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 127 acctggggtgacgggcgcggcaagatcctcaacaacggccagctcctgacgctgggactg 186
Query: 271 gacaggtcctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgac 330
|||| | ||||||||| || |||||||||||| | ||||||||| |||| |||||
Sbjct: 187 gacaaggtctccggctccgggttccagtccaagcacgagtacctcttcggcaagatcgac 246
Query: 331 atgcagctcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcg 390
|||||||||||||||||||| || |||| ||||||||||| || ||| ||| || |||
Sbjct: 247 atgcagctcaagctcgtccccggcaactctgccggcaccgtaaccgcctactacctgtcg 306
Query: 391 tcgcagggttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggag 450
|||||||| || |||||||||||||||||||||||||||||| |||| | ||| |||
Sbjct: 307 tcgcaggggccgacgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgag 366
Query: 451 ccgtacacggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttc 510
|| |||||| ||||||| ||||||| || |||||| ||||| |||||||| ||||||
Sbjct: 367 ccctacacgctgcacaccaacgtgttcacgcaggggcagggccaacgggagcaacagttc 426
Query: 511 cggatgtggttcgaccccac 530
|| | |||||||| |||||
Sbjct: 427 cgcctctggttcgatcccac 446
>gb|BQ462941.1|BQ462941 HI02H24r HI Hordeum vulgare subsp. vulgare cDNA clone HI02H24
5-PRIME, mRNA sequence
Length = 538
Score = 206 bits (104), Expect = 1e-051
Identities = 266/320 (83%)
Strand = Plus / Plus
Query: 211 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctgtccatg 270
|||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 144 acctggggtgacgggcgcggcaagatcctcaacaacggccagctcctgacgctgggactg 203
Query: 271 gacaggtcctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgac 330
|||| | ||||||||| || |||||||||||| | ||||||||| |||| |||||
Sbjct: 204 gacaaggtctccggctccgggttccagtccaagcacgagtacctcttcggcaagatcgac 263
Query: 331 atgcagctcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcg 390
|||||||||||||||||||| || |||| ||||||||||| || ||| ||| || |||
Sbjct: 264 atgcagctcaagctcgtccccggcaactctgccggcaccgtaaccgcctactacctgtcg 323
Query: 391 tcgcagggttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggag 450
|||||||| || |||||||||||||||||||||||||||||| |||| | ||| |||
Sbjct: 324 tcgcaggggccgacgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgag 383
Query: 451 ccgtacacggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttc 510
|| |||||| ||||||| ||||||| || |||||| ||||| |||||||| ||||||
Sbjct: 384 ccctacacgctgcacaccaacgtgttcacgcaggggcagggccaacgggagcaacagttc 443
Query: 511 cggatgtggttcgaccccac 530
|| | |||||||| |||||
Sbjct: 444 cgcctctggttcgatcccac 463
>gb|BF624089.2|BF624089 HVSMEa0009G06f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0009G06f, mRNA sequence
Length = 798
Score = 204 bits (103), Expect = 5e-051
Identities = 232/275 (84%)
Strand = Plus / Plus
Query: 278 cctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgacatgcagc 337
|||||||||| ||||||||||||||| | ||||||||| |||| |||||||||||
Sbjct: 271 cctccggctccggcttccagtccaagagcgagtacctcttcggcaagatcgacatgcaga 330
Query: 338 tcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcgtcgcagg 397
||||||||||||| || ||||||||||||||||| |||||||||| || ||||||||||
Sbjct: 331 tcaagctcgtccccggcaactccgccggcaccgtcaccaccttctacctgtcgtcgcagg 390
Query: 398 gttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggagccgtaca 457
| || |||||||||||||||||||||||||||||| |||| | ||| ||||| ||||
Sbjct: 391 ggacggcgcacgacgagatcgacttcgagttcctgggtaacgtcaccggcgagccctaca 450
Query: 458 cggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttccggatgt 517
|| ||||||| ||||||| | |||||| |||| |||||||||||||||||| | |
Sbjct: 451 cgctgcacaccaacgtgttcgcgcaggggcaggggcagcgggagcagcagttccgcctct 510
Query: 518 ggttcgaccccacggcggccttccacgcctactcc 552
||||||||||||| |||||||||| ||||||||
Sbjct: 511 ggttcgaccccaccaaggccttccacacctactcc 545
Score = 42.1 bits (21), Expect = 0.043
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 183 cggcaacttctaccaggacgtggacatcacctggggcgacggccgcggcaagatcctcga 242
||||||||||| ||||||| ||| || ||||||| ||||||||||| ||| || ||||
Sbjct: 176 cggcaacttcttccaggactcggagatgtcctggggggacggccgcgggaaggtcgtcga 235
Query: 243 c 243
|
Sbjct: 236 c 236
>gb|BE060552.2|BE060552 HVSMEg0012J20f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0012J20f, mRNA sequence
Length = 621
Score = 204 bits (103), Expect = 5e-051
Identities = 232/275 (84%)
Strand = Plus / Plus
Query: 278 cctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgacatgcagc 337
|||||||||| ||||||||||||||| | ||||||||| |||| |||||||||||
Sbjct: 264 cctccggctccggcttccagtccaagagcgagtacctcttcggcaagatcgacatgcaga 323
Query: 338 tcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcgtcgcagg 397
||||||||||||| || ||||||||||||||||| |||||||||| || ||||||||||
Sbjct: 324 tcaagctcgtccccggcaactccgccggcaccgtcaccaccttctacctgtcgtcgcagg 383
Query: 398 gttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggagccgtaca 457
| || |||||||||||||||||||||||||||||| |||| | ||| ||||| ||||
Sbjct: 384 ggacggcgcacgacgagatcgacttcgagttcctgggtaacgtcaccggcgagccctaca 443
Query: 458 cggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttccggatgt 517
|| ||||||| ||||||| | |||||| |||| |||||||||||||||||| | |
Sbjct: 444 cgctgcacaccaacgtgttcgcgcaggggcaggggcagcgggagcagcagttccgcctct 503
Query: 518 ggttcgaccccacggcggccttccacgcctactcc 552
||||||||||||| |||||||||| ||||||||
Sbjct: 504 ggttcgaccccaccaaggccttccacacctactcc 538
Score = 42.1 bits (21), Expect = 0.043
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 183 cggcaacttctaccaggacgtggacatcacctggggcgacggccgcggcaagatcctcga 242
||||||||||| ||||||| ||| || ||||||| ||||||||||| ||| || ||||
Sbjct: 169 cggcaacttcttccaggactcggagatgtcctggggggacggccgcgggaaggtcgtcga 228
Query: 243 c 243
|
Sbjct: 229 c 229
>gb|BQ460689.1|BQ460689 HA06D17r HA Hordeum vulgare subsp. vulgare cDNA clone HA06D17
5-PRIME, mRNA sequence
Length = 569
Score = 204 bits (103), Expect = 5e-051
Identities = 232/275 (84%)
Strand = Plus / Plus
Query: 278 cctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgacatgcagc 337
|||||||||| ||||||||||||||| | ||||||||| |||| |||||||||||
Sbjct: 273 cctccggctccggcttccagtccaagagcgagtacctcttcggcaagatcgacatgcaga 332
Query: 338 tcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcgtcgcagg 397
||||||||||||| || ||||||||||||||||| |||||||||| || ||||||||||
Sbjct: 333 tcaagctcgtccccggcaactccgccggcaccgtcaccaccttctacctgtcgtcgcagg 392
Query: 398 gttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggagccgtaca 457
| || |||||||||||||||||||||||||||||| |||| | ||| ||||| ||||
Sbjct: 393 ggacggcgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgagccctaca 452
Query: 458 cggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttccggatgt 517
|| ||||||| ||||||| | |||||| |||| |||||||||||||||||| | |
Sbjct: 453 cgctgcacaccaacgtgttcgcgcaggggcaggggcagcgggagcagcagttccgcctct 512
Query: 518 ggttcgaccccacggcggccttccacgcctactcc 552
||||||||||||| |||||||||| ||||||||
Sbjct: 513 ggttcgaccccaccaaggccttccacacctactcc 547
>gb|BQ467526.1|BQ467526 HS04B01r HS Hordeum vulgare subsp. vulgare cDNA clone HS04B01
5-PRIME, mRNA sequence
Length = 665
Score = 204 bits (103), Expect = 5e-051
Identities = 232/275 (84%)
Strand = Plus / Plus
Query: 278 cctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgacatgcagc 337
|||||||||| ||||||||||||||| | ||||||||| |||| |||||||||||
Sbjct: 259 cctccggctccggcttccagtccaagagcgagtacctcttcggcaagatcgacatgcaga 318
Query: 338 tcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcgtcgcagg 397
||||||||||||| || ||||||||||||||||| |||||||||| || ||||||||||
Sbjct: 319 tcaagctcgtccccggcaactccgccggcaccgtcaccaccttctacctgtcgtcgcagg 378
Query: 398 gttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggagccgtaca 457
| || |||||||||||||||||||||||||||||| |||| | ||| ||||| ||||
Sbjct: 379 ggacggcgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgagccctaca 438
Query: 458 cggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttccggatgt 517
|| ||||||| ||||||| | |||||| |||| |||||||||||||||||| | |
Sbjct: 439 cgctgcacaccaacgtgttcgcgcaggggcaggggcagcgggagcagcagttccgcctct 498
Query: 518 ggttcgaccccacggcggccttccacgcctactcc 552
||||||||||||| |||||||||| ||||||||
Sbjct: 499 ggttcgaccccaccaaggccttccacacctactcc 533
>gb|BQ467998.1|BQ467998 HR01J18r HR Hordeum vulgare subsp. vulgare cDNA clone HR01J18
5-PRIME, mRNA sequence
Length = 575
Score = 204 bits (103), Expect = 5e-051
Identities = 232/275 (84%)
Strand = Plus / Plus
Query: 278 cctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgacatgcagc 337
|||||||||| ||||||||||||||| | ||||||||| |||| |||||||||||
Sbjct: 272 cctccggctccggcttccagtccaagagcgagtacctcttcggcaagatcgacatgcaga 331
Query: 338 tcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcgtcgcagg 397
||||||||||||| || ||||||||||||||||| |||||||||| || ||||||||||
Sbjct: 332 tcaagctcgtccccggcaactccgccggcaccgtcaccaccttctacctgtcgtcgcagg 391
Query: 398 gttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggagccgtaca 457
| || |||||||||||||||||||||||||||||| |||| | ||| ||||| ||||
Sbjct: 392 ggacggcgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgagccctaca 451
Query: 458 cggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttccggatgt 517
|| ||||||| ||||||| | |||||| |||| |||||||||||||||||| | |
Sbjct: 452 cgctgcacaccaacgtgttcgcgcaggggcaggggcagcgggagcagcagttccgcctct 511
Query: 518 ggttcgaccccacggcggccttccacgcctactcc 552
||||||||||||| |||||||||| ||||||||
Sbjct: 512 ggttcgaccccaccaaggccttccacacctactcc 546
>gb|BU997685.1|BU997685 HI08L09r HI Hordeum vulgare subsp. vulgare cDNA clone HI08L09
5-PRIME, mRNA sequence
Length = 583
Score = 204 bits (103), Expect = 5e-051
Identities = 232/275 (84%)
Strand = Plus / Plus
Query: 278 cctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgacatgcagc 337
|||||||||| ||||||||||||||| | ||||||||| |||| |||||||||||
Sbjct: 249 cctccggctccggcttccagtccaagagcgagtacctcttcggcaagatcgacatgcaga 308
Query: 338 tcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcgtcgcagg 397
||||||||||||| || ||||||||||||||||| |||||||||| || ||||||||||
Sbjct: 309 tcaagctcgtccccggcaactccgccggcaccgtcaccaccttctacctgtcgtcgcagg 368
Query: 398 gttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggagccgtaca 457
| || |||||||||||||||||||||||||||||| |||| | ||| ||||| ||||
Sbjct: 369 ggacggcgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgagccctaca 428
Query: 458 cggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttccggatgt 517
|| ||||||| ||||||| | |||||| |||| |||||||||||||||||| | |
Sbjct: 429 cgctgcacaccaacgtgttcgcgcaggggcaggggcagcgggagcagcagttccgcctct 488
Query: 518 ggttcgaccccacggcggccttccacgcctactcc 552
||||||||||||| |||||||||| ||||||||
Sbjct: 489 ggttcgaccccaccaaggccttccacacctactcc 523
>gb|BU997928.1|BU997928 HI09H06r HI Hordeum vulgare subsp. vulgare cDNA clone HI09H06
5-PRIME, mRNA sequence
Length = 551
Score = 204 bits (103), Expect = 5e-051
Identities = 232/275 (84%)
Strand = Plus / Plus
Query: 278 cctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgacatgcagc 337
|||||||||| ||||||||||||||| | ||||||||| |||| |||||||||||
Sbjct: 249 cctccggctccggcttccagtccaagagcgagtacctcttcggcaagatcgacatgcaga 308
Query: 338 tcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcgtcgcagg 397
||||||||||||| || ||||||||||||||||| |||||||||| || ||||||||||
Sbjct: 309 tcaagctcgtccccggcaactccgccggcaccgtcaccaccttctacctgtcgtcgcagg 368
Query: 398 gttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggagccgtaca 457
| || |||||||||||||||||||||||||||||| |||| | ||| ||||| ||||
Sbjct: 369 ggacggcgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgagccctaca 428
Query: 458 cggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttccggatgt 517
|| ||||||| ||||||| | |||||| |||| |||||||||||||||||| | |
Sbjct: 429 cgctgcacaccaacgtgttcgcgcaggggcaggggcagcgggagcagcagttccgcctct 488
Query: 518 ggttcgaccccacggcggccttccacgcctactcc 552
||||||||||||| |||||||||| ||||||||
Sbjct: 489 ggttcgaccccaccaaggccttccacacctactcc 523
>emb|X93175.1|HVXETXEB H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
(XEB)
Length = 1226
Score = 204 bits (103), Expect = 5e-051
Identities = 232/275 (84%)
Strand = Plus / Plus
Query: 278 cctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgacatgcagc 337
|||||||||| ||||||||||||||| | ||||||||| |||| |||||||||||
Sbjct: 264 cctccggctccggcttccagtccaagagcgagtacctcttcggcaagatcgacatgcaga 323
Query: 338 tcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcgtcgcagg 397
||||||||||||| || ||||||||||||||||| |||||||||| || ||||||||||
Sbjct: 324 tcaagctcgtccccggcaactccgccggcaccgtcaccaccttctacctgtcgtcgcagg 383
Query: 398 gttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggagccgtaca 457
| || |||||||||||||||||||||||||||||| |||| | ||| ||||| ||||
Sbjct: 384 ggacggcgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgagccctaca 443
Query: 458 cggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttccggatgt 517
|| ||||||| ||||||| | |||||| |||| |||||||||||||||||| | |
Sbjct: 444 cgctgcacaccaacgtgttcgcgcaggggcaggggcagcgggagcagcagttccgcctct 503
Query: 518 ggttcgaccccacggcggccttccacgcctactcc 552
||||||||||||| |||||||||| ||||||||
Sbjct: 504 ggttcgaccccaccaaggccttccacacctactcc 538
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 652 cagccgatgcgggtgtacgccagcgtgtgggacgcggaggagtgggccacgca 704
|||||||||||| ||||||| ||| ||||| |||| || || |||||||||||
Sbjct: 638 cagccgatgcggctgtacgcgagcctgtggaacgccgacgactgggccacgca 690
Score = 48.1 bits (24), Expect = 7e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 885 catgatctacaactactgcaccga 908
||||||||||||||||||||||||
Sbjct: 898 catgatctacaactactgcaccga 921
>gb|AL450643.1|AL450643 AL450643 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03J06u 5', mRNA sequence
Length = 529
Score = 202 bits (102), Expect = 2e-050
Identities = 252/302 (83%)
Strand = Plus / Plus
Query: 211 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctgtccatg 270
|||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 137 acctggggtgacgggcgcggcaagatcctcaacaacggccagctcctgacgctgggactg 196
Query: 271 gacaggtcctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgac 330
|||| | ||||||||| || |||||||||||| | ||||||||| |||| |||||
Sbjct: 197 gacaaggtctccggctccgggttccagtccaagcacgagtacctcttcggcaagatcgac 256
Query: 331 atgcagctcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcg 390
|||||||||||||||||||| || |||| ||||||||||| || ||| ||| || |||
Sbjct: 257 atgcagctcaagctcgtccccggcaactctgccggcaccgtaaccgcctactacctgtcg 316
Query: 391 tcgcagggttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggag 450
|||||||| || |||||||||||||||||||||||||||||| |||| | ||| |||
Sbjct: 317 tcgcaggggccgacgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgag 376
Query: 451 ccgtacacggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttc 510
|| |||||| ||||||| ||||||| || |||||| ||||| |||||||| ||||||
Sbjct: 377 ccctacacgctgcacaccaacgtgttcacgcaggggcagggccaacgggagcaacagttc 436
Query: 511 cg 512
||
Sbjct: 437 cg 438
>gb|BF631278.2|BF631278 HVSMEb0015H17f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0015H17f, mRNA sequence
Length = 768
Score = 202 bits (102), Expect = 2e-050
Identities = 252/302 (83%)
Strand = Plus / Plus
Query: 211 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctgtccatg 270
|||||||| ||||| ||||||||||||||| |||| |||||||| |||| |||| ||
Sbjct: 55 acctggggtgacgggcgcggcaagatcctcaacaatggccagctgctgatgctggggctg 114
Query: 271 gacaggtcctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgac 330
|||| | ||||||||| || |||||||||||| | ||||||||| |||| |||||
Sbjct: 115 gacaaggtctccggctccgggttccagtccaagcgcgagtacctcttcggcaagatcgac 174
Query: 331 atgcagctcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcg 390
|||||||||||||||||||| || ||||||||||||||||| || | | || || |||
Sbjct: 175 atgcagctcaagctcgtccccggcaactccgccggcaccgtcaccgcatattacctgtcg 234
Query: 391 tcgcagggttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggag 450
||||||||| || |||||||||||||||||||||||||||||| |||| | ||| |||
Sbjct: 235 tcgcagggtccgacgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgag 294
Query: 451 ccgtacacggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttc 510
|| |||||| ||||||| ||||||| || |||||| ||||| ||||||||||||||||
Sbjct: 295 ccatacacgctgcacaccaacgtgttcacgcaggggcagggccagcgggagcagcagttc 354
Query: 511 cg 512
||
Sbjct: 355 cg 356
>gb|BM370804.2|BM370804 EBro04_SQ002_F05_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ002_F05 5', mRNA sequence
Length = 601
Score = 202 bits (102), Expect = 2e-050
Identities = 252/302 (83%)
Strand = Plus / Plus
Query: 211 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctgtccatg 270
|||||||| ||||| ||||||||||||||| |||| |||||||| |||| |||| ||
Sbjct: 109 acctggggtgacgggcgcggcaagatcctcaacaatggccagctgctgatgctggggctg 168
Query: 271 gacaggtcctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgac 330
|||| | ||||||||| || |||||||||||| | ||||||||| |||| |||||
Sbjct: 169 gacaaggtctccggctccgggttccagtccaagcgcgagtacctcttcggcaagatcgac 228
Query: 331 atgcagctcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcg 390
|||||||||||||||||||| || ||||||||||||||||| || | | || || |||
Sbjct: 229 atgcagctcaagctcgtccccggcaactccgccggcaccgtcaccgcatattacctgtcg 288
Query: 391 tcgcagggttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggag 450
||||||||| || |||||||||||||||||||||||||||||| |||| | ||| |||
Sbjct: 289 tcgcagggtccgacgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgag 348
Query: 451 ccgtacacggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttc 510
|| |||||| ||||||| ||||||| || |||||| ||||| ||||||||||||||||
Sbjct: 349 ccatacacgctgcacaccaacgtgttcacgcaggggcagggccagcgggagcagcagttc 408
Query: 511 cg 512
||
Sbjct: 409 cg 410
>gb|BQ764817.1|BQ764817 EBca01_SQ005_A06_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_A06 5', mRNA sequence
Length = 634
Score = 202 bits (102), Expect = 2e-050
Identities = 252/302 (83%)
Strand = Plus / Plus
Query: 211 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctgtccatg 270
|||||||| ||||| ||||||||||||||| |||| |||||||| |||| |||| ||
Sbjct: 187 acctggggtgacgggcgcggcaagatcctcaacaatggccagctgctgatgctggggctg 246
Query: 271 gacaggtcctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgac 330
|||| | ||||||||| || |||||||||||| | ||||||||| |||| |||||
Sbjct: 247 gacaaggtctccggctccgggttccagtccaagcgcgagtacctcttcggcaagatcgac 306
Query: 331 atgcagctcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcg 390
|||||||||||||||||||| || ||||||||||||||||| || | | || || |||
Sbjct: 307 atgcagctcaagctcgtccccggcaactccgccggcaccgtcaccgcatattacctgtcg 366
Query: 391 tcgcagggttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggag 450
||||||||| || |||||||||||||||||||||||||||||| |||| | ||| |||
Sbjct: 367 tcgcagggtccgacgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgag 426
Query: 451 ccgtacacggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttc 510
|| |||||| ||||||| ||||||| || |||||| ||||| ||||||||||||||||
Sbjct: 427 ccatacacgctgcacaccaacgtgttcacgcaggggcagggccagcgggagcagcagttc 486
Query: 511 cg 512
||
Sbjct: 487 cg 488
>gb|AL450913.1|AL450913 AL450913 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK04P11u 5', mRNA sequence
Length = 638
Score = 198 bits (100), Expect = 3e-049
Identities = 265/320 (82%)
Strand = Plus / Plus
Query: 211 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctgtccatg 270
|||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 143 acctggggtgacgggcgcggcaagatcctcaacaacggccagctcctgacgctgggactg 202
Query: 271 gacaggtcctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgac 330
|||| | ||||||||| || |||||||||||| | ||||||||| |||| |||||
Sbjct: 203 gacaaggtctccggctccgggttccagtccaagcacgagtacctcttcggcaagatcgac 262
Query: 331 atgcagctcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcg 390
|||||||||||||||||||| || |||| ||||||||||| || ||| ||| || |||
Sbjct: 263 atgcagctcaagctcgtccccggcaactctgccggcaccgtaaccgcctactacctgtcg 322
Query: 391 tcgcagggttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggag 450
|||||||| || |||||||||||||||||||||||||||||| |||| | ||| |||
Sbjct: 323 tcgcaggggccgacgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgag 382
Query: 451 ccgtacacggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttc 510
|| |||||| ||||||| ||||||| || |||||| | ||| |||||||| ||||||
Sbjct: 383 ccctacacgctgcacaccaacgtgttcacgcaggggcaaggccaacgggagcaacagttc 442
Query: 511 cggatgtggttcgaccccac 530
|| | |||||||| |||||
Sbjct: 443 cgcctctggttcgatcccac 462
>gb|BQ764772.1|BQ764772 EBca01_SQ004_H24_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ004_H24 5', mRNA sequence
Length = 525
Score = 198 bits (100), Expect = 3e-049
Identities = 265/320 (82%)
Strand = Plus / Plus
Query: 211 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctgtccatg 270
|||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 133 acctggggtgacgggcgcggcaagatcctcaacaacggccagctcctgacgctgggactg 192
Query: 271 gacaggtcctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgac 330
|||| ||||||||| || |||||||||||| | ||||||||| |||| |||||
Sbjct: 193 gacaaagtctccggctccgggttccagtccaagcacgagtacctcttcggcaagatcgac 252
Query: 331 atgcagctcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcg 390
|||||||||||||||||||| || |||| ||||||||||| || ||| ||| || |||
Sbjct: 253 atgcagctcaagctcgtccccggcaactctgccggcaccgtaaccgcctactacctgtcg 312
Query: 391 tcgcagggttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggag 450
|||||||| || |||||||||||||||||||||||||||||| |||| | ||| |||
Sbjct: 313 tcgcaggggccgacgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgag 372
Query: 451 ccgtacacggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttc 510
|| |||||| ||||||| ||||||| || |||||| ||||| |||||||| ||||||
Sbjct: 373 ccctacacgctgcacaccaacgtgttcacgcaggggcagggccaacgggagcaacagttc 432
Query: 511 cggatgtggttcgaccccac 530
|| | |||||||| |||||
Sbjct: 433 cgcctctggttcgatcccac 452
>gb|CA007079.1|CA007079 HU06K21r HU Hordeum vulgare subsp. vulgare cDNA clone HU06K21
5-PRIME, mRNA sequence
Length = 574
Score = 198 bits (100), Expect = 3e-049
Identities = 231/275 (84%)
Strand = Plus / Plus
Query: 278 cctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgacatgcagc 337
|||||||||| ||||||||||||||| | ||||||||| |||| |||||||||||
Sbjct: 278 cctccggctccggcttccagtccaagagcgagtacctcttcggcaagatcgacatgcaga 337
Query: 338 tcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcgtcgcagg 397
||||||||||||| || ||||||||||||||||| |||||||||| || ||||||||||
Sbjct: 338 tcaagctcgtccccggcaactccgccggcaccgtcaccaccttctacctgtcgtcgcagg 397
Query: 398 gttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggagccgtaca 457
| || |||||||||||||||||||||||||||||| |||| | ||| ||||| ||||
Sbjct: 398 ggacggcgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgagccctaca 457
Query: 458 cggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttccggatgt 517
|| ||||||| ||||||| | |||||| |||| |||||||||||||||||| | |
Sbjct: 458 cgctgcacaccaacgtgttcgcgcaggggcaggggcagcgggagcagcagttccgcctct 517
Query: 518 ggttcgaccccacggcggccttccacgcctactcc 552
||||||||| ||| |||||||||| ||||||||
Sbjct: 518 ggttcgaccncaccaaggccttccacacctactcc 552
>gb|BF260656.2|BF260656 HVSMEf0022J12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022J12f, mRNA sequence
Length = 729
Score = 196 bits (99), Expect = 1e-048
Identities = 231/275 (84%)
Strand = Plus / Plus
Query: 278 cctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgacatgcagc 337
|||||||||| ||||||||||||||| | ||||||||| |||| |||||||||||
Sbjct: 260 cctccggctccggcttccagtccaagagcgagtacctcttcggcaagatcgacatgcaga 319
Query: 338 tcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcgtcgcagg 397
||||||||||||| || ||||||||||||||||| |||||||||| || ||||||||||
Sbjct: 320 tcaagctcgtccccggcaactccgccggcaccgtcaccaccttctacctgtcgtcgcagg 379
Query: 398 gttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggagccgtaca 457
| || |||||||||||||||||||||||||||||| |||| | ||| ||||| ||||
Sbjct: 380 ggacggcgcacgacgagatcgacttcgagttcctgggtaacgtcaccggcgagccctaca 439
Query: 458 cggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttccggatgt 517
|| ||||||| ||||||| | |||||| |||| ||||||||| |||||||| | |
Sbjct: 440 cgctgcacaccaacgtgttcgcgcaggggcaggggcagcgggagcaacagttccgcctct 499
Query: 518 ggttcgaccccacggcggccttccacgcctactcc 552
||||||||||||| |||||||||| ||||||||
Sbjct: 500 ggttcgaccccaccaaggccttccacacctactcc 534
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 652 cagccgatgcgggtgtacgccagcgtgtgggacgcggaggagtgggccacgca 704
|||||||||||| ||||||| ||| ||||| |||| || || |||||||||||
Sbjct: 634 cagccgatgcggctgtacgcgagcctgtggaacgccgacgactgggccacgca 686
Score = 42.1 bits (21), Expect = 0.043
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 183 cggcaacttctaccaggacgtggacatcacctggggcgacggccgcggcaagatcctcga 242
||||||||||| ||||||| ||| || ||||||| ||||||||||| ||| || ||||
Sbjct: 165 cggcaacttcttccaggactcggagatgtcctggggggacggccgcgggaaggtcgtcga 224
Query: 243 c 243
|
Sbjct: 225 c 225
>gb|BF620035.2|BF620035 HVSMEc0011F01f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0011F01f, mRNA sequence
Length = 434
Score = 194 bits (98), Expect = 5e-048
Identities = 236/282 (83%)
Strand = Plus / Plus
Query: 211 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctgtccatg 270
|||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 127 acctggggtgacgggcgcggcaagatcctcaacaacggccagctcctgacgctgggactg 186
Query: 271 gacaggtcctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgac 330
|||| | ||||||||| || |||||||||||| | ||||||||| |||| |||||
Sbjct: 187 gacaaggtctccggctccgggttccagtccaagcacgagtacctcttcggcaagatcgac 246
Query: 331 atgcagctcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcg 390
|||||||||||||||||||| || |||| ||||||||||| || ||| ||| || |||
Sbjct: 247 atgcagctcaagctcgtccccggcaactctgccggcaccgtaaccgcctactacctgtcg 306
Query: 391 tcgcagggttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggag 450
|||||||| || |||||||||||||||||||||||||||||| |||| | ||| |||
Sbjct: 307 tcgcaggggccgacgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgag 366
Query: 451 ccgtacacggtgcacacgaacgtgtacagccaggggaagggc 492
|| |||||| ||||||| ||||||| || |||||| |||||
Sbjct: 367 ccctacacgctgcacaccaacgtgttcacgcaggggcagggc 408
>gb|BF629930.2|BF629930 HVSMEb0007F19f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0007F19f, mRNA sequence
Length = 499
Score = 192 bits (97), Expect = 2e-047
Identities = 264/320 (82%)
Strand = Plus / Plus
Query: 211 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctgtccatg 270
||||| || ||||| ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 134 acctgnggtgacgggcgcggcaagatcctcaacaacggccagctcctgacgctgggactg 193
Query: 271 gacaggtcctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgac 330
|||| | ||||||||| | |||||||||||| | ||||||||| |||| |||||
Sbjct: 194 gacaaggtctccggctcccggttccagtccaagcacgagtacctcttcggcaagatcgac 253
Query: 331 atgcagctcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcg 390
|||||||||||||||||||| || |||| ||||||||||| || ||| ||| || |||
Sbjct: 254 atgcagctcaagctcgtccccggcaactctgccggcaccgtaaccgcctactacctgtcg 313
Query: 391 tcgcagggttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggag 450
|||||||| || |||||||||||||||||||||||||||||| |||| | ||| |||
Sbjct: 314 tcgcaggggccgacgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgag 373
Query: 451 ccgtacacggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttc 510
|| |||||| ||||||| ||||||| || |||||| ||||| |||||||| ||||||
Sbjct: 374 ccctacacgctgcacaccaacgtgttcacgcaggggcagggccaacgggagcaacagttc 433
Query: 511 cggatgtggttcgaccccac 530
|| | |||||||| |||||
Sbjct: 434 cgcctctggttcgatcccac 453
>gb|BF618579.2|BF618579 HVSMEc0006G01f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0006G01f, mRNA sequence
Length = 557
Score = 192 bits (97), Expect = 2e-047
Identities = 223/265 (84%)
Strand = Plus / Plus
Query: 211 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctgtccatg 270
|||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 138 acctggggtgacgggcgcggcaagatcctcaacaacggccagctcctgacgctgggactg 197
Query: 271 gacaggtcctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgac 330
|||| | ||||||||| || |||||||||||| | ||||||||| |||| |||||
Sbjct: 198 gacaaggtctccggctccgggttccagtccaagcacgagtacctcttcggcaagatcgac 257
Query: 331 atgcagctcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcg 390
|||||||||||||||||||| || |||| ||||||||||| || ||| ||| || |||
Sbjct: 258 atgcagctcaagctcgtccccggcaactctgccggcaccgtaaccgcctactacctgtcg 317
Query: 391 tcgcagggttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggag 450
|||||||| || |||||||||||||||||||||||||||||| |||| | ||| |||
Sbjct: 318 tcgcaggggccgacgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgag 377
Query: 451 ccgtacacggtgcacacgaacgtgt 475
|| |||||| ||||||| |||||||
Sbjct: 378 ccctacacgctgcacaccaacgtgt 402
>gb|BQ462594.1|BQ462594 HI01G12T HI Hordeum vulgare subsp. vulgare cDNA clone HI01G12
5-PRIME, mRNA sequence
Length = 486
Score = 192 bits (97), Expect = 2e-047
Identities = 214/253 (84%)
Strand = Plus / Plus
Query: 278 cctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgacatgcagc 337
|||||||||| ||||||||||||||| | ||||||||| |||| |||||||||||
Sbjct: 233 cctccggctccggcttccagtccaagagcgagtacctcttcggcaagatcgacatgcaga 292
Query: 338 tcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcgtcgcagg 397
||||||||||||| || ||||||||||||||||| |||||||||| || ||||||||||
Sbjct: 293 tcaagctcgtccccggcaactccgccggcaccgtcaccaccttctacctgtcgtcgcagg 352
Query: 398 gttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggagccgtaca 457
| || |||||||||||||||||||||||||||||| |||| | ||| ||||| ||||
Sbjct: 353 ggacggcgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgagccctaca 412
Query: 458 cggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttccggatgt 517
|| ||||||| ||||||| | |||||| |||| |||||||||||||||||| | |
Sbjct: 413 cgctgcacaccaacgtgttcgcgcaggggcaggggcagcgggagcagcagttccgcctct 472
Query: 518 ggttcgaccccac 530
|||||||||||||
Sbjct: 473 ggttcgaccccac 485
>gb|BI960618.1|BI960618 HVSMEn0025G09f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0025G09f, mRNA sequence
Length = 690
Score = 190 bits (96), Expect = 7e-047
Identities = 230/275 (83%)
Strand = Plus / Plus
Query: 278 cctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgacatgcagc 337
|||||||||| ||||||||||||||| | ||||||||| |||| |||||||||||
Sbjct: 276 cctccggctccggcttccagtccaagagcgagtacctcttcggcaagatcgacatgcaga 335
Query: 338 tcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcgtcgcagg 397
||||||||||||| || ||||||||||||||||| |||||||||| || ||||||||||
Sbjct: 336 tcaagctcgtccccggcaactccgccggcaccgtcaccaccttctacctgtcgtcgcagg 395
Query: 398 gttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggagccgtaca 457
| || |||||||||||||||||||||||||||||| |||| | ||| ||||| ||||
Sbjct: 396 ggacggcgcacgacgagatcgacttcgagttcctgggtaacgtcaccggcgagccctaca 455
Query: 458 cggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttccggatgt 517
|| ||||||| ||||||| | || ||| |||| |||||||||||||||||| | |
Sbjct: 456 cgctgcacaccaacgtgttcgcgcatgggcaggggcagcgggagcagcagttccgcctct 515
Query: 518 ggttcgaccccacggcggccttccacgcctactcc 552
||||||||||||| |||||| ||| ||||||||
Sbjct: 516 ggttcgaccccaccaaggccttncacacctactcc 550
Score = 42.1 bits (21), Expect = 0.043
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 183 cggcaacttctaccaggacgtggacatcacctggggcgacggccgcggcaagatcctcga 242
||||||||||| ||||||| ||| || ||||||| ||||||||||| ||| || ||||
Sbjct: 181 cggcaacttcttccaggactcggagatgtcctggggggacggccgcgggaaggtcgtcga 240
Query: 243 c 243
|
Sbjct: 241 c 241
>gb|BQ461043.1|BQ461043 HE01F23r HE Hordeum vulgare subsp. vulgare cDNA clone HE01F23
5-PRIME, mRNA sequence
Length = 491
Score = 188 bits (95), Expect = 3e-046
Identities = 245/295 (83%)
Strand = Plus / Plus
Query: 211 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctgtccatg 270
|||||||| ||||| ||||||||||||||| |||| |||||||| |||| |||| ||
Sbjct: 197 acctggggtgacgggcgcggcaagatcctcaacaatggccagctgctgatgctggggctg 256
Query: 271 gacaggtcctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgac 330
|||| | ||||||||| || |||||||||||| | ||||||||| |||| |||||
Sbjct: 257 gacaaggtctccggctccgggttccagtccaagcgcgagtacctcttcggcaagatcgac 316
Query: 331 atgcagctcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcg 390
|||||||||||||||||||| || ||||||||||||||||| || | | || || |||
Sbjct: 317 atgcagctcaagctcgtccccggcaactccgccggcaccgtcaccgcatattacctgtcg 376
Query: 391 tcgcagggttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggag 450
||||||||| || |||||||||||||||||||||||||||||| |||| | ||| |||
Sbjct: 377 tcgcagggtccgacgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgag 436
Query: 451 ccgtacacggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagc 505
|| |||||| ||||||| ||||||| || |||||| ||||| |||||||||||
Sbjct: 437 ccatacacgctgcacaccaacgtgttcacgcaggggcagggccagcgggagcagc 491
>gb|CA020574.1|CA020574 HZ36L09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ36L09
5-PRIME, mRNA sequence
Length = 589
Score = 186 bits (94), Expect = 1e-045
Identities = 268/326 (82%)
Strand = Plus / Plus
Query: 205 gacatcacctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctg 264
|||||||||||||||||||| || ||||||||||| |||| || |||||||||||||||
Sbjct: 191 gacatcacctggggcgacgggcgtggcaagatcctgaacaatggtcagctcctgacgctg 250
Query: 265 tccatggacaggtcctccggctcgggcttccagtccaaggcccagtacctctacggccgc 324
| |||||| | |||||||| || |||||||||||| | ||||||||| ||||
Sbjct: 251 gcgctggacaaggtgtccggctccgggttccagtccaagcacgagtacctcttcggcaag 310
Query: 325 ttcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtcgccaccttctat 384
||||||||||||||||||||||||| || |||| |||||||||||| || | | |||
Sbjct: 311 atcgacatgcagctcaagctcgtccccggcaactctgccggcaccgtcaccgcatactac 370
Query: 385 ctttcgtcgcagggttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagc 444
|| ||||||||||| || |||||||||||||||||||||||||||||| |||| | |
Sbjct: 371 ctgtcgtcgcaggggccgacgcacgacgagatcgacttcgagttcctgggcaacgtcacc 430
Query: 445 ggggagccgtacacggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcag 504
|| ||||| |||||| ||||||| ||||||| || |||||| | ||| |||||||||
Sbjct: 431 ggcgagccctacacgctgcacaccaacgtgttcacgcaggggcaaggccaacgggagcag 490
Query: 505 cagttccggatgtggttcgaccccac 530
||||| || | |||||||| |||||
Sbjct: 491 cagtttcgcctctggttcgatcccac 516
>gb|CA024504.1|CA024504 HZ49H21r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ49H21
5-PRIME, mRNA sequence
Length = 562
Score = 186 bits (94), Expect = 1e-045
Identities = 268/326 (82%)
Strand = Plus / Plus
Query: 205 gacatcacctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctg 264
|||||||||||||||||||| || ||||||||||| |||| || |||||||||||||||
Sbjct: 194 gacatcacctggggcgacgggcgtggcaagatcctgaacaatggtcagctcctgacgctg 253
Query: 265 tccatggacaggtcctccggctcgggcttccagtccaaggcccagtacctctacggccgc 324
| |||||| | |||||||| || |||||||||||| | ||||||||| ||||
Sbjct: 254 gcgctggacaaggtgtccggctccgggttccagtccaagcacgagtacctcttcggcaag 313
Query: 325 ttcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtcgccaccttctat 384
||||||||||||||||||||||||| || |||| |||||||||||| || | | |||
Sbjct: 314 atcgacatgcagctcaagctcgtccccggcaactctgccggcaccgtcaccgcatactac 373
Query: 385 ctttcgtcgcagggttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagc 444
|| ||||||||||| || |||||||||||||||||||||||||||||| |||| | |
Sbjct: 374 ctgtcgtcgcaggggccgacgcacgacgagatcgacttcgagttcctgggcaacgtcacc 433
Query: 445 ggggagccgtacacggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcag 504
|| ||||| |||||| ||||||| ||||||| || |||||| | ||| |||||||||
Sbjct: 434 ggcgagccctacacgctgcacaccaacgtgttcacgcaggggcaaggccaacgggagcag 493
Query: 505 cagttccggatgtggttcgaccccac 530
||||| || | |||||||| |||||
Sbjct: 494 cagtttcgcctctggttcgatcccac 519
>gb|BF618456.2|BF618456 HVSMEc0005L21f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0005L21f, mRNA sequence
Length = 802
Score = 184 bits (93), Expect = 5e-045
Identities = 222/265 (83%)
Strand = Plus / Plus
Query: 211 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctgtccatg 270
|||||||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 134 acctggggtgacgggcgcggcaagatcctcaacaacggccagctcctgacgctgggactg 193
Query: 271 gacaggtcctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgac 330
|||| | ||||||||| || |||||||||||| | ||||||||| |||| |||||
Sbjct: 194 gacaaggtctccggctccgggttccagtccaagcacaagtacctcttcggcaagatcgac 253
Query: 331 atgcagctcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcg 390
|||||||||||||||||||| || |||| ||||||||||| || ||| ||| || |||
Sbjct: 254 atgcagctcaagctcgtccccggcaactctgccggcaccgtaaccgcctactacctgtcg 313
Query: 391 tcgcagggttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggag 450
|||||||| || |||||||||||||||||||||||||||||| |||| | ||| ||
Sbjct: 314 tcgcaggggccgacgcacgacgagatcgacttcgagttcctgggcaacgtaaccggcaag 373
Query: 451 ccgtacacggtgcacacgaacgtgt 475
|| |||||| ||||||| |||||||
Sbjct: 374 ccctacacgctgcacaccaacgtgt 398
>gb|CA027287.1|CA027287 HZ58H04r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ58H04
5-PRIME, mRNA sequence
Length = 433
Score = 184 bits (93), Expect = 5e-045
Identities = 222/265 (83%)
Strand = Plus / Plus
Query: 211 acctggggcgacggccgcggcaagatcctcgacaacggccagctcctgacgctgtccatg 270
|||||||| ||||| ||||||||||||||| |||| |||||||| ||||||||| | ||
Sbjct: 157 acctggggtgacgggcgcggcaagatcctcaacaatggccagctgctgacgctgggcctg 216
Query: 271 gacaggtcctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgac 330
|||| | ||||||||| || |||||||||||| | ||||||||| |||| |||||
Sbjct: 217 gacaaggtctccggctccgggttccagtccaagcacgagtacctcttcggcaagatcgac 276
Query: 331 atgcagctcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcg 390
||||| |||||||||||||| || |||||||||||||||| || ||| ||| || |||
Sbjct: 277 atgcaactcaagctcgtccccggcaactccgccggcaccgtaaccgcctactacctgtcg 336
Query: 391 tcgcagggttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggag 450
||||||||| | |||||||||||||||||||||||||||||| |||| | ||| |||
Sbjct: 337 tcgcagggtcctacgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgag 396
Query: 451 ccgtacacggtgcacacgaacgtgt 475
|| |||||| ||||||| |||||||
Sbjct: 397 ccctacacgctgcacaccaacgtgt 421
>gb|BF260946.2|BF260946 HVSMEf0023F18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0023F18f, mRNA sequence
Length = 798
Score = 182 bits (92), Expect = 2e-044
Identities = 232/276 (84%), Gaps = 2/276 (0%)
Strand = Plus / Plus
Query: 278 cctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgacatgcagc 337
|||||||||| ||||| ||||||||| | ||||||||| |||| |||||||||||
Sbjct: 273 cctccggctccggctttcagtccaagagcgagtacctcttcggcaagatcgacatgcaga 332
Query: 338 tcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcgtcgcagg 397
||||||||||||| || ||||||||||||||||| |||||||||| || ||||||||||
Sbjct: 333 tcaagctcgtccccggcaactccgccggcaccgtcaccaccttctacctgtcgtcgcagg 392
Query: 398 gttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggagccgtaca 457
| || |||||||||||||||||||||||||||||| |||| | ||| ||||| ||||
Sbjct: 393 ggacggcgcacgacgagatcgacttcgagttcctgggtaacgtcaccggcgagccctaca 452
Query: 458 cggtgcacacgaacgtg-tacagccaggggaagggcgggcgggagcagcagttccggatg 516
|| ||||||| |||||| | | || ||| |||||| |||||||||||||||||| |
Sbjct: 453 cgctgcacaccaacgtgtttccgcaggggcaagggc-agcgggagcagcagttccgcctc 511
Query: 517 tggttcgaccccacggcggccttccacgcctactcc 552
|||||||||||||| |||||||||| ||||||||
Sbjct: 512 tggttcgaccccaccaaggccttccacacctactcc 547
Score = 40.1 bits (20), Expect = 0.17
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 183 cggcaacttctaccaggacgtggacatcacctggggcgacggccgcgg 230
||||||||||| ||||||| ||| || ||||||| |||||||||||
Sbjct: 178 cggcaacttcttccaggactcggagatgtcctggggggacggccgcgg 225
>gb|BI778475.2|BI778475 EBro07_SQ003_G13_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ003_G13 5', mRNA sequence
Length = 525
Score = 180 bits (91), Expect = 7e-044
Identities = 193/227 (85%)
Strand = Plus / Plus
Query: 326 tcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatc 385
||||||||||| ||||||||||||| || ||||||||||||||||| |||||||||| |
Sbjct: 28 tcgacatgcagatcaagctcgtccccggcaactccgccggcaccgtcaccaccttctacc 87
Query: 386 tttcgtcgcagggttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcg 445
| ||||||||||| || |||||||||||||||||||||||||||||| |||| | ||
Sbjct: 88 tgtcgtcgcaggggacggcgcacgacgagatcgacttcgagttcctgggcaacgtcaccg 147
Query: 446 gggagccgtacacggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagc 505
| ||||| |||||| ||||||| ||||||| | |||||| |||| |||||||||||
Sbjct: 148 gcgagccctacacgctgcacaccaacgtgttcgcgcaggggcaggggcagcgggagcagc 207
Query: 506 agttccggatgtggttcgaccccacggcggccttccacgcctactcc 552
||||||| | |||||||||||||| |||||||||| ||||||||
Sbjct: 208 agttccgcctctggttcgaccccaccaaggccttccacacctactcc 254
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 652 cagccgatgcgggtgtacgccagcgtgtgggacgcggaggagtgggccacgca 704
|||||||||||| ||||||| ||| ||||| |||| || || |||||||||||
Sbjct: 354 cagccgatgcggctgtacgcgagcctgtggaacgccgacgactgggccacgca 406
>gb|AL503674.1|AL503674 AL503674 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03A15T 5', mRNA sequence
Length = 520
Score = 178 bits (90), Expect = 3e-043
Identities = 214/254 (84%), Gaps = 1/254 (0%)
Strand = Plus / Plus
Query: 278 cctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgacatgcagc 337
|||||||||| ||||||||||||||| | ||||||||| |||| |||||||||||
Sbjct: 250 cctccggctccggcttccagtccaagagcgagtacctcttcggcaagatcgacatgcaga 309
Query: 338 tcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcgtcgcagg 397
||||||||||||| || ||||||||||||||||| |||||||||| || ||||||||||
Sbjct: 310 tcaagctcgtccccggcaactccgccggcaccgtcaccaccttctacctgtcgtcgcagg 369
Query: 398 gttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggagccgtaca 457
| || |||||||||||||||||||||||||||||| |||| | ||| ||||| ||||
Sbjct: 370 ggacggcgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgagccctaca 429
Query: 458 cggtgcacacgaacgtgtacagccaggggaagggcgggcgggagc-agcagttccggatg 516
|| ||||||| ||||||| | |||||| |||| |||||||| |||||||||| |
Sbjct: 430 cgctgcacaccaacgtgttcgcgcaggggcaggggcagcgggagcaagcagttccgcctc 489
Query: 517 tggttcgaccccac 530
||||||||||||||
Sbjct: 490 tggttcgaccccac 503
>gb|BI957177.1|BI957177 HVSMEn0007P14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0007P14f, mRNA sequence
Length = 908
Score = 178 bits (90), Expect = 3e-043
Identities = 230/274 (83%), Gaps = 2/274 (0%)
Strand = Plus / Plus
Query: 278 cctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgacatgcagc 337
|||||||||| ||||||||||||| | | ||||||||| |||| ||||| |||||
Sbjct: 252 cctccggctccggcttccagtccatgagcgagtacctcttcggcaagatcgacgtgcaga 311
Query: 338 tcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcgtcgcagg 397
||||||||||||| || ||||||||||||||||| |||||||||| || ||||||||||
Sbjct: 312 tcaagctcgtccccggcaactccgccggcaccgtcaccaccttctacctgtcgtcgcagg 371
Query: 398 gttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggagccgtaca 457
| || |||||||||||||||||||||||||||||| ||| | ||| ||||| ||||
Sbjct: 372 ggacggcgcacgacgagatcgacttcgagttcctgggtgacgtcaccggcgagccctaca 431
Query: 458 cggtgcacacgaacgtgtacagccagggg-aagggcgggcgggagcagcagttccggatg 516
|| ||||||| ||||||| | |||||| |||||| ||||||||||||||||||| |
Sbjct: 432 cgctgcacaccaacgtgttcgcgcaggggcaagggc-agcgggagcagcagttccggctc 490
Query: 517 tggttcgaccccacggcggccttccacgcctact 550
|||||||||||||| |||||||||| ||||||
Sbjct: 491 tggttcgaccccaccaaggccttccacacctact 524
Score = 40.1 bits (20), Expect = 0.17
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 183 cggcaacttctaccaggacgtggacatcacctggggcgacggccgcgg 230
||||||||||| ||||||| ||| || ||||||| |||||||||||
Sbjct: 157 cggcaacttcttccaggactcggagatgtcctggggggacggccgcgg 204
>gb|BE455947.3|BE455947 HVSMEg0017N10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0017N10f, mRNA sequence
Length = 801
Score = 178 bits (90), Expect = 3e-043
Identities = 222/266 (83%)
Strand = Plus / Plus
Query: 278 cctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgacatgcagc 337
|||||||||| ||||| ||||||||| | ||||||||| |||| |||||||||||
Sbjct: 259 cctccggctccggctttcagtccaagagcgagtacctcttcggcaagatcgacatgcaga 318
Query: 338 tcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcgtcgcagg 397
||||||||||||| || ||||||||||||||||| |||||||||| || ||||||||||
Sbjct: 319 tcaagctcgtccccggcaactccgccggcaccgtcaccaccttctacctgtcgtcgcagg 378
Query: 398 gttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggagccgtaca 457
| || |||||||||||||||||||||||||||||| |||| | | | ||||| ||||
Sbjct: 379 ggacggcgcacgacgagatcgacttcgagttcctgggtaacgtcacccgcgagccctaca 438
Query: 458 cggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttccggatgt 517
|| ||||||| ||||||| | |||||| |||| |||||||||||||||||| | |
Sbjct: 439 cgctgcacaccaacgtgttcgcgcaggggcaggggcagcgggagcagcagttccgcctct 498
Query: 518 ggttcgaccccacggcggccttccac 543
||||||||||||| ||||||||||
Sbjct: 499 ggttcgaccccaccaaggccttccac 524
Score = 50.1 bits (25), Expect = 2e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 652 cagccgatgcgggtgtacgccagcgtgtgggacgcggaggagtgggccacgca 704
|||||||||||| ||||||| ||| ||||| |||| || || |||||||||||
Sbjct: 633 cagccgatgcggctgtacgcgagcctgtggaacgccgacgactgggccacgca 685
Score = 42.1 bits (21), Expect = 0.043
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 183 cggcaacttctaccaggacgtggacatcacctggggcgacggccgcggcaagatcctcga 242
||||||||||| ||||||| ||| || ||||||| ||||||||||| ||| || ||||
Sbjct: 164 cggcaacttcttccaggactcggagatgtcctggggggacggccgcgggaaggtcgtcga 223
Query: 243 c 243
|
Sbjct: 224 c 224
>gb|CA003718.1|CA003718 HS15F14r HS Hordeum vulgare subsp. vulgare cDNA clone HS15F14
5-PRIME, mRNA sequence
Length = 513
Score = 178 bits (90), Expect = 3e-043
Identities = 198/234 (84%)
Strand = Plus / Plus
Query: 278 cctccggctcgggcttccagtccaaggcccagtacctctacggccgcttcgacatgcagc 337
|||||||||| ||||||||||||||| | ||||||||| |||| |||||||||||
Sbjct: 280 cctccggctccggcttccagtccaagagcgagtacctcttcggcaagatcgacatgcaga 339
Query: 338 tcaagctcgtcccgggggactccgccggcaccgtcgccaccttctatctttcgtcgcagg 397
||||||||||||| || ||||||||||||||||| |||||||||| || ||||||||||
Sbjct: 340 tcaagctcgtccccggcaactccgccggcaccgtcaccaccttctacctgtcgtcgcagg 399
Query: 398 gttcgcagcacgacgagatcgacttcgagttcctggggaacgcgagcggggagccgtaca 457
| || |||||||||||||||||||||||||||||| |||| | ||| ||||| ||||
Sbjct: 400 ggacggcgcacgacgagatcgacttcgagttcctgggcaacgtcaccggcgagccctaca 459
Query: 458 cggtgcacacgaacgtgtacagccaggggaagggcgggcgggagcagcagttcc 511
|| ||||||| ||||||| | |||||| |||| |||||||||||||||||
Sbjct: 460 cgctgcacaccaacgtgttcgcgcaggggcaggggcagcgggagcagcagttcc 513
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 192,925
Number of Sequences: 312970
Number of extensions: 192925
Number of successful extensions: 65596
Number of sequences better than 0.5: 227
Number of HSP's better than 0.5 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64802
Number of HSP's gapped (non-prelim): 614
length of query: 1223
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1204
effective length of database: 169,188,109
effective search space: 203702483236
effective search space used: 203702483236
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)