BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8010496.2.1
(1046 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ765008.1|BQ765008 EBca01_SQ005_D16_R carpel, pre-anthe... 307 4e-082
gb|BU967340.1|BU967340 HB03P20r BC Hordeum vulgare subsp. v... 268 3e-070
gb|BF255699.3|BF255699 HVSMEf0007J01f Hordeum vulgare seedl... 242 2e-062
gb|BU994975.1|BU994975 HM08M21r HM Hordeum vulgare subsp. v... 218 3e-055
gb|BQ768653.1|BQ768653 EBro08_SQ012_F07_R root, 3 week, dro... 196 1e-048
gb|BF260719.2|BF260719 HVSMEf0022M05f Hordeum vulgare seedl... 194 4e-048
gb|CB859220.1|CB859220 HI09M02w HI Hordeum vulgare subsp. v... 119 2e-025
gb|AJ434494.1|AJ434494 AJ434494 S00002 Hordeum vulgare subs... 90 2e-016
gb|BF256248.3|BF256248 HVSMEf0009E04f Hordeum vulgare seedl... 82 4e-014
gb|BU994020.1|BU994020 HM05G16r HM Hordeum vulgare subsp. v... 82 4e-014
gb|CB880675.1|CB880675 HM07G16w HM Hordeum vulgare subsp. v... 82 4e-014
gb|CB881108.1|CB881108 HM08M21w HM Hordeum vulgare subsp. v... 82 4e-014
gb|CA024900.1|CA024900 HZ50K09r HZ Hordeum vulgare subsp. v... 76 3e-012
gb|BQ760319.1|BQ760319 EBpi07_SQ003_L24_R pistil, 12 DPA, n... 52 4e-005
gb|CB875548.1|CB875548 HX08K06w HX Hordeum vulgare subsp. v... 52 4e-005
gb|BQ761367.1|BQ761367 EBro06_SQ001_H02_R root, 3 week, dro... 42 0.036
>gb|BQ765008.1|BQ765008 EBca01_SQ005_D16_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_D16 5', mRNA sequence
Length = 685
Score = 307 bits (155), Expect = 4e-082
Identities = 381/461 (82%), Gaps = 1/461 (0%)
Strand = Plus / Minus
Query: 503 gggtacttgctgccgaacccaaccacgtagctcatcttcttggggttgtcaccgagaatg 562
|||||||| ||||| |||| |||||||||||||||||| | ||||| || || || |||
Sbjct: 678 gggtacttcttgccgtaccccaccacgtagctcatcttcatcgggttatccccaaggatg 619
Query: 563 tagttgatctgagacctggcgaactcacggaggtcgttggtggtcatgaagtttggaccg 622
||||| | |||||| ||||||| |||||||||| | |||||||||||| || |||
Sbjct: 618 tagttcagctgagatttggcgaaggagcggaggtcgtcgacggtcatgaagttggggccg 559
Query: 623 cagtaccagccggggacgttgacggcctccatgtagtcggcgtagagcgcagcgagaaag 682
||||||||||||||||||||||||| ||||||||||||||| || ||||| ||||| |||
Sbjct: 558 cagtaccagccggggacgttgacggactccatgtagtcggcataaagcgcggcgaggaag 499
Query: 683 gagttggcgacgacgtactgcagcggctgccccctgccgtggttgaagagcgccatcccg 742
|||||||||||| |||||||||||| ||| ||| |||||||||||| | || | ||||
Sbjct: 498 gagttggcgacggcgtactgcagcgcctggccctggccgtggttgaactgggcgagcccg 439
Query: 743 cccttnggtgaagttgaaggcggcgaagcccggaaagtacatgcacatgttgaggctggt 802
||||| |||||||||||| ||| ||| || || |||||||||||||| | ||||||
Sbjct: 438 ccctt-ggtgaagttgaacgcgttgaacttggggaaatacatgcacatgttcatgctggt 380
Query: 803 ggcgttgtggtagccggcgagcgannnntcgtacgggtagccggggttgaggaacatgcg 862
| |||||||||| || |||||| ||||| ||||||||||||||||||||||||||
Sbjct: 379 gacgttgtggtatcccatgagcgactcctcgtaggggtagccggggttgaggaacatgcg 320
Query: 863 cagccgcgncagcagcagctgggcgcccgggagctnnnnntcccagctgaacacnnagaa 922
|||||||| ||||||||| |||||| ||||||| ||||||||||| || ||||
Sbjct: 319 cagccgcgacagcagcagggtggcgccggggagcttgttgtcccagctgaagacggagaa 260
Query: 923 gtcgaggatgttgangnnnnccttggcgtncttgggcagcc 963
|||||||||||||| | ||||||||| |||||| ||||
Sbjct: 259 gtcgaggatgttgaagtaggccttggcgttcttggggagcc 219
>gb|BU967340.1|BU967340 HB03P20r BC Hordeum vulgare subsp. vulgare cDNA clone HB03P20
5-PRIME, mRNA sequence
Length = 523
Score = 268 bits (135), Expect = 3e-070
Identities = 300/360 (83%), Gaps = 1/360 (0%)
Strand = Plus / Minus
Query: 604 ggtcatgaagtttggaccgcagtaccagccggggacgttgacggcctccatgtagtcggc 663
|||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 472 ggtcatgaagttggggccgcagtaccagccggggacgttgacggactccatgtagtcggc 413
Query: 664 gtagagcgcagcgagaaaggagttggcgacgacgtactgcagcggctgccccctgccgtg 723
|| ||||| ||||| ||||||||||| ||| |||||||||||| ||| ||| ||||||
Sbjct: 412 ataaagcgcggcgaggaaggagttggcnacggcgtactgcagcgcctggccctggccgtg 353
Query: 724 gttgaagagcgccatcccgcccttnggtgaagttgaaggcggcgaagcccggaaagtaca 783
|||||| | || | ||||||||| |||||||||||| ||| ||| || || ||||
Sbjct: 352 gttgaactgggcgagcccgccctt-ggtgaagttgaacgcgttgaacttggggaaataca 294
Query: 784 tgcacatgttgaggctggtggcgttgtggtagccggcgagcgannnntcgtacgggtagc 843
|||||||||| | ||||||| |||||||||| || |||||| ||||| |||||||
Sbjct: 293 tgcacatgttcatgctggtgacgttgtggtatcccatgagcgactcctcgtaggggtagc 234
Query: 844 cggggttgaggaacatgcgcagccgcgncagcagcagctgggcgcccgggagctnnnnnt 903
||||||||||||||||||||||||||| ||||||||| |||||| ||||||| |
Sbjct: 233 cggggttgaggaacatgcgcagccgcgacagcagcagggtggcgccggggagcttgttgt 174
Query: 904 cccagctgaacacnnagaagtcgaggatgttgangnnnnccttggcgtncttgggcagcc 963
|||||||||| || |||||||||||||||||| | ||||||||| |||||| ||||
Sbjct: 173 cccagctgaagacggagaagtcgaggatgttgaagtaggccttggcgttcttggggagcc 114
>gb|BF255699.3|BF255699 HVSMEf0007J01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0007J01f, mRNA sequence
Length = 833
Score = 242 bits (122), Expect = 2e-062
Identities = 285/344 (82%), Gaps = 1/344 (0%)
Strand = Plus / Minus
Query: 620 ccgcagtaccagccggggacgttgacggcctccatgtagtcggcgtagagcgcagcgaga 679
||||||||||||||||| ||| |||||| ||||||||||||||| || ||||| |||||
Sbjct: 403 ccgcagtaccagccgggtacgatgacggactccatgtagtcggcataaagcgcggcgagt 344
Query: 680 aaggagttggcgacgacgtactgcagcggctgccccctgccgtggttgaagagcgccatc 739
||||||||||||||| |||||||||||| ||| ||| |||||||||||| | || | |
Sbjct: 343 aaggagttggcgacggcgtactgcagcgcctggccctggccgtggttgaactgggcgagc 284
Query: 740 ccgcccttnggtgaagttgaaggcggcgaagcccggaaagtacatgcacatgttgaggct 799
|||||||| |||||||||||| ||| ||| || || |||||||||||||| | |||
Sbjct: 283 ccgccctt-ggtgaagttgaacgcgttgaacttggggaaatacatgcacatgttcatgct 225
Query: 800 ggtggcgttgtggtagccggcgagcgannnntcgtacgggtagccggggttgaggaacat 859
|||| |||||||||| || |||||| ||||| |||||||||||||||||||||||
Sbjct: 224 ggtgacgttgtggtatcccatgagcgactcctcgtaggggtagccggggttgaggaacat 165
Query: 860 gcgcagccgcgncagcagcagctgggcgcccgggagctnnnnntcccagctgaacacnna 919
||||||||||| ||||||||| |||||| ||||||| ||||||||||| || |
Sbjct: 164 gcgcagccgcgacagcagcagggtggcgccggggagcttgttgtcccagctgaagacgga 105
Query: 920 gaagtcgaggatgttgangnnnnccttggcgtncttgggcagcc 963
||||||||||||||||| | ||||||||| |||||| ||||
Sbjct: 104 gaagtcgaggatgttgaagtaggccttggcgttcttggggagcc 61
>gb|BU994975.1|BU994975 HM08M21r HM Hordeum vulgare subsp. vulgare cDNA clone HM08M21
5-PRIME, mRNA sequence
Length = 537
Score = 218 bits (110), Expect = 3e-055
Identities = 367/450 (81%), Gaps = 4/450 (0%)
Strand = Plus / Minus
Query: 259 gccgctgctggtgagagccaccagggccgcgacgaggccggcgttgcctgaccagcgtcg 318
||||||| |||||| || ||||| || |||||||| ||||||||||| ||||||||| |
Sbjct: 463 gccgctgttggtgatggcgaccagcgcggcgacgagcccggcgttgcc-gaccagcgtgg 405
Query: 319 gctcgttctgcccgaag-tgttgcgcgagtccttgaagccgtcgttcttgtcgggcccgc 377
||||||||||| || || || | | | ||||||||| |||||||||||| || ||||
Sbjct: 404 gctcgttctgcgcgtagctgatcctggcgtccttgaacttgtcgttcttgtccgggccgc 345
Query: 378 cgaccatggnnnnnnnnagcaggttggggtccgctttcttgctgtcgcgccacttgtagc 437
||||||||| |||| || ||||| || |||||| ||||||||||||| ||
Sbjct: 344 cgaccatggcgcccgtgagcacgtgagggtctgccttcttggaatcgcgccacttgttgc 285
Query: 438 cgccggtgcacgagtacttgacgccgttgtgcggcgtggacgcgccacggtggtgcacgt 497
||||||||||||||||||||| ||||| | ||||| ||||| |||||||||||||
Sbjct: 284 cgccggtgcacgagtacttgatcccgttcttgggcgtcgacgccccacggtggtgcagcc 225
Query: 498 gccgtgggtacttgctgccgaacccaaccacgtagctcatcttcttggggttgtcaccga 557
|| |||||||| ||||| |||| |||||||||||||||||| | ||||| || || |
Sbjct: 224 gcttcgggtacttcttgccgtaccccaccacgtagctcatcttcatcgggttatccccaa 165
Query: 558 gaatgtagttgatctgagacctggcgaactcacggaggtcgttggtggtcatgaagtttg 617
| |||||||| | |||||| ||||||| |||||||||| | |||||||||||| |
Sbjct: 164 ggatgtagttcagctgagatttggcgaaggagcggaggtcgtcgacggtcatgaagttgg 105
Query: 618 gaccgcagtaccagccggggacgttgacggcctccatgtagtcggcgtagagcgcagcga 677
| |||||||||||||||||||||||||||| ||||||| ||||||| || ||||| ||||
Sbjct: 104 ggccgcagtaccagccggggacgttgacggactccatg-agtcggcataaagcgcggcga 46
Query: 678 gaaaggagttggcgacgacgtactgcagcg 707
| |||||| |||||||| ||||||||||||
Sbjct: 45 ggaaggag-tggcgacggcgtactgcagcg 17
Score = 77.8 bits (39), Expect = 7e-013
Identities = 52/55 (94%), Gaps = 1/55 (1%)
Strand = Plus / Minus
Query: 188 gcggcggggaacattgtgcggcacggcggagaacatggtgttcttgtcgacggcg 242
||||| |||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gcggccgggaacatgg-gcggcacggcggagaacatggtgttcttgtcgacggcg 481
>gb|BQ768653.1|BQ768653 EBro08_SQ012_F07_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_F07 5', mRNA sequence
Length = 408
Score = 196 bits (99), Expect = 1e-048
Identities = 315/387 (81%), Gaps = 2/387 (0%)
Strand = Plus / Minus
Query: 278 accagggccgcgacgaggccggcgttgcctgaccagcgtcggctcgttctgcccgaag-t 336
||||| || |||||||| ||||||||||| ||||||||| |||||||||||| || || |
Sbjct: 394 accagcgcggcgacgagcccggcgttgcc-gaccagcgtgggctcgttctgcgcgtagct 336
Query: 337 gttgcgcgagtccttgaagccgtcgttcttgtcgggcccgccgaccatggnnnnnnnnag 396
| | | | ||||||||| |||||||||||| || ||||||||||||| ||
Sbjct: 335 gatcctggcgtccttgaacttgtcgttcttgtccgggccgccgaccatggcgcccgtgag 276
Query: 397 caggttggggtccgctttcttgctgtcgcgccacttgtagccgccggtgcacgagtactt 456
|| || ||||| || |||||| ||||||||||||| |||||||||||||||||||||
Sbjct: 275 cacgtgagggtctgccttcttggaatcgcgccacttgttgccgccggtgcacgagtactt 216
Query: 457 gacgccgttgtgcggcgtggacgcgccacggtggtgcacgtgccgtgggtacttgctgcc 516
|| ||||| | ||||| ||||| ||||||||||||| || |||||||| ||||
Sbjct: 215 gatcccgttcttgggcgtcgacgccccacggtggtgcagccgcttcgggtacttcttgcc 156
Query: 517 gaacccaaccacgtagctcatcttcttggggttgtcaccgagaatgtagttgatctgaga 576
| |||| |||||||||||||||||| | ||||| || || || |||||||| | ||||||
Sbjct: 155 gtaccccaccacgtagctcatcttcatcgggttatccccaaggatgtagttcagctgaga 96
Query: 577 cctggcgaactcacggaggtcgttggtggtcatgaagtttggaccgcagtaccagccggg 636
||||||| |||||||||| | |||||||||||| || |||||||||||||||||
Sbjct: 95 tttggcgaaggagcggaggtcgtcgacggtcatgaagttggggccgcagtaccagccggg 36
Query: 637 gacgttgacggcctccatgtagtcggc 663
||||||||||| |||||||||||||||
Sbjct: 35 gacgttgacggactccatgtagtcggc 9
>gb|BF260719.2|BF260719 HVSMEf0022M05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022M05f, mRNA sequence
Length = 541
Score = 194 bits (98), Expect = 4e-048
Identities = 263/323 (81%), Gaps = 1/323 (0%)
Strand = Plus / Minus
Query: 641 ttgacggcctccatgtagtcggcgtagagcgcagcgagaaaggagttggcgacgacgtac 700
||||||| ||||||||||||||| || ||||| ||||| ||||||||||||||| |||||
Sbjct: 540 ttgacggactccatgtagtcggcataaagcgcggcgaggaaggagttggcgacggcgtac 481
Query: 701 tgcagcggctgccccctgccgtggttgaagagcgccatcccgcccttnggtgaagttgaa 760
||||||| || | | ||||||||||| | || | ||||||||| ||||||||||||
Sbjct: 480 tgcagcgcatggcactgnccgtggttgaactgggcgagcccgccctt-ggtgaagttgaa 422
Query: 761 ggcggcgaagcccggaaagtacatgcacatgttgaggctggtggcgttgtggtagccggc 820
||| ||| || || |||||||||||||| | ||||||| |||||||||| ||
Sbjct: 421 cgcgttgaacttggggaaatacatgcacatgttcatgctggtgacgttgtggtatcccat 362
Query: 821 gagcgannnntcgtacgggtagccggggttgaggaacatgcgcagccgcgncagcagcag 880
|||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 361 gagcgactcctcgtaggggtagccggggttgaggaacatgcgcagccgcgacagcagcag 302
Query: 881 ctgggcgcccgggagctnnnnntcccagctgaacacnnagaagtcgaggatgttgangnn 940
|||||| ||||||| ||||||||||| || |||||||||||||||||| |
Sbjct: 301 ggtggcgccggggagcttgttgtcccagctgaagacggagaagtcgaggatgttgaagta 242
Query: 941 nnccttggcgtncttgggcagcc 963
||||||||| |||||| ||||
Sbjct: 241 ggccttggcgttcttggggagcc 219
>gb|CB859220.1|CB859220 HI09M02w HI Hordeum vulgare subsp. vulgare cDNA clone HI09M02
3-PRIME, mRNA sequence
Length = 649
Score = 119 bits (60), Expect = 2e-025
Identities = 228/284 (80%), Gaps = 2/284 (0%)
Strand = Plus / Plus
Query: 259 gccgctgctggtgagagccaccagggccgcgacgaggccggcgttgcctgaccagcgtcg 318
||||||| |||||| || ||||| || |||||||| ||||||||||| ||||||||| |
Sbjct: 361 gccgctgttggtgatggcgaccagcgcggcgacgagcccggcgttgcc-gaccagcgtgg 419
Query: 319 gctcgttctgcccgaag-tgttgcgcgagtccttgaagccgtcgttcttgtcgggcccgc 377
||||||||||| || || || | | | ||||||||| |||||||||||| || ||||
Sbjct: 420 gctcgttctgcgcgtagctgatcctggcgtccttgaacttgtcgttcttgtccgggccgc 479
Query: 378 cgaccatggnnnnnnnnagcaggttggggtccgctttcttgctgtcgcgccacttgtagc 437
||||||||| |||| || ||||| || |||||| ||||||||||||| ||
Sbjct: 480 cgaccatggcgcccgtgagcacgtgagggtctgccttcttggaatcgcgccacttgttgc 539
Query: 438 cgccggtgcacgagtacttgacgccgttgtgcggcgtggacgcgccacggtggtgcacgt 497
||||||||||||||||||||| ||||| | ||||| ||||| |||||||||||||
Sbjct: 540 cgccggtgcacgagtacttgatcccgttcttgggcgtcgacgccccacggtggtgcagcc 599
Query: 498 gccgtgggtacttgctgccgaacccaaccacgtagctcatcttc 541
|| |||||||| ||||| |||| ||||||||||||||||||
Sbjct: 600 gcttcgggtacttcttgccgtaccccaccacgtagctcatcttc 643
Score = 81.8 bits (41), Expect = 4e-014
Identities = 57/61 (93%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 182 ggcggcgcggcggggaacattgtgcggcacggcggagaacatggtgttcttgtcgacggc 241
||||| ||||| |||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 284 ggcggggcggccgggaacatgg-gcggcacggcggagaacatggtgttcttgtcgacggc 342
Query: 242 g 242
|
Sbjct: 343 g 343
>gb|AJ434494.1|AJ434494 AJ434494 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200012H05F1, mRNA sequence
Length = 477
Score = 89.7 bits (45), Expect = 2e-016
Identities = 162/201 (80%), Gaps = 2/201 (0%)
Strand = Plus / Minus
Query: 259 gccgctgctggtgagagccaccagggccgcgacgaggccggcgttgcctgaccagcgtcg 318
||||||| |||||| || ||||| || |||||||| ||||||||||| ||||||||| |
Sbjct: 205 gccgctgttggtgatggcgaccagcgcggcgacgagcccggcgttgcc-gaccagcgtgg 147
Query: 319 gctcgttctgcccgaag-tgttgcgcgagtccttgaagccgtcgttcttgtcgggcccgc 377
||||||||||| || || || | | | ||||||||| |||||||||||| || ||||
Sbjct: 146 gctcgttctgcgcgtagctgatcctggcgtccttgaacttgtcgttcttgtccgggccgc 87
Query: 378 cgaccatggnnnnnnnnagcaggttggggtccgctttcttgctgtcgcgccacttgtagc 437
||||||||| |||| || ||||| || |||||| ||||||||||||| ||
Sbjct: 86 cgaccatggcgcccgtgagcacgtgagggtctgccttcttggaatcgcgccacttgttgc 27
Query: 438 cgccggtgcacgagtacttga 458
|||||||||||||||||||||
Sbjct: 26 cgccggtgcacgagtacttga 6
Score = 81.8 bits (41), Expect = 4e-014
Identities = 57/61 (93%), Gaps = 1/61 (1%)
Strand = Plus / Minus
Query: 182 ggcggcgcggcggggaacattgtgcggcacggcggagaacatggtgttcttgtcgacggc 241
||||| ||||| |||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggcggggcggccgggaacatgg-gcggcacggcggagaacatggtgttcttgtcgacggc 224
Query: 242 g 242
|
Sbjct: 223 g 223
>gb|BF256248.3|BF256248 HVSMEf0009E04f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0009E04f, mRNA sequence
Length = 550
Score = 81.8 bits (41), Expect = 4e-014
Identities = 57/61 (93%), Gaps = 1/61 (1%)
Strand = Plus / Minus
Query: 182 ggcggcgcggcggggaacattgtgcggcacggcggagaacatggtgttcttgtcgacggc 241
||||| ||||| |||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggcggggcggccgggaacatgg-gcggcacggcggagaacatggtgttcttgtcgacggc 183
Query: 242 g 242
|
Sbjct: 182 g 182
Score = 65.9 bits (33), Expect = 3e-009
Identities = 107/129 (82%), Gaps = 2/129 (1%)
Strand = Plus / Minus
Query: 259 gccgctgctggtgagagccaccagggccgcgacgaggccggcgttgcctgaccagcgtcg 318
||||||| |||||| || ||||| || |||||||| ||||||||||| ||||||||| |
Sbjct: 164 gccgctgttggtgatggcgaccagcgcggcgacgagcccggcgttgcc-gaccagcgtgg 106
Query: 319 gctcgttctgcccgaag-tgttgcgcgagtccttgaagccgtcgttcttgtcgggcccgc 377
||||||||||| || || || | | | ||||||||| |||||||||||| || ||||
Sbjct: 105 gctcgttctgcgcgtagctgatcctggcgtccttgaacttgtcgttcttgtccgggccgc 46
Query: 378 cgaccatgg 386
|||||||||
Sbjct: 45 cgaccatgg 37
>gb|BU994020.1|BU994020 HM05G16r HM Hordeum vulgare subsp. vulgare cDNA clone HM05G16
5-PRIME, mRNA sequence
Length = 426
Score = 81.8 bits (41), Expect = 4e-014
Identities = 57/61 (93%), Gaps = 1/61 (1%)
Strand = Plus / Minus
Query: 182 ggcggcgcggcggggaacattgtgcggcacggcggagaacatggtgttcttgtcgacggc 241
||||| ||||| |||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 149 ggcggggcggccgggaacatgg-gcggcacggcggagaacatggtgttcttgtcgacggc 91
Query: 242 g 242
|
Sbjct: 90 g 90
Score = 61.9 bits (31), Expect = 4e-008
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Minus
Query: 259 gccgctgctggtgagagccaccagggccgcgacgaggccggcgttgcctgaccagcgtcg 318
||||||| |||||| || ||||| || |||||||| ||||||||||| ||||||||| |
Sbjct: 72 gccgctgttggtgatggcgaccagcgcggcgacgagcccggcgttgcc-gaccagcgtgg 14
Query: 319 gctcgttctgc 329
|||||||||||
Sbjct: 13 gctcgttctgc 3
>gb|CB880675.1|CB880675 HM07G16w HM Hordeum vulgare subsp. vulgare cDNA clone HM07G16
3-PRIME, mRNA sequence
Length = 434
Score = 81.8 bits (41), Expect = 4e-014
Identities = 57/61 (93%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 182 ggcggcgcggcggggaacattgtgcggcacggcggagaacatggtgttcttgtcgacggc 241
||||| ||||| |||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 279 ggcggggcggccgggaacatgg-gcggcacggcggagaacatggtgttcttgtcgacggc 337
Query: 242 g 242
|
Sbjct: 338 g 338
Score = 61.9 bits (31), Expect = 4e-008
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 259 gccgctgctggtgagagccaccagggccgcgacgaggccggcgttgcctgaccagcgtcg 318
||||||| |||||| || ||||| || |||||||| ||||||||||| ||||||||| |
Sbjct: 356 gccgctgttggtgatggcgaccagcgcggcgacgagcccggcgttgcc-gaccagcgtgg 414
Query: 319 gctcgttctgc 329
|||||||||||
Sbjct: 415 gctcgttctgc 425
>gb|CB881108.1|CB881108 HM08M21w HM Hordeum vulgare subsp. vulgare cDNA clone HM08M21
3-PRIME, mRNA sequence
Length = 551
Score = 81.8 bits (41), Expect = 4e-014
Identities = 57/61 (93%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 182 ggcggcgcggcggggaacattgtgcggcacggcggagaacatggtgttcttgtcgacggc 241
||||| ||||| |||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 349 ggcggggcggccgggaacatgg-gcggcacggcggagaacatggtgttcttgtcgacggc 407
Query: 242 g 242
|
Sbjct: 408 g 408
Score = 61.9 bits (31), Expect = 4e-008
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 259 gccgctgctggtgagagccaccagggccgcgacgaggccggcgttgcctgaccagcgtcg 318
||||||| |||||| || ||||| || |||||||| ||||||||||| ||||||||| |
Sbjct: 426 gccgctgttggtgatggcgaccagcgcggcgacgagcccggcgttgcc-gaccagcgtgg 484
Query: 319 gctcgttctgc 329
|||||||||||
Sbjct: 485 gctcgttctgc 495
>gb|CA024900.1|CA024900 HZ50K09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50K09
5-PRIME, mRNA sequence
Length = 509
Score = 75.8 bits (38), Expect = 3e-012
Identities = 146/182 (80%), Gaps = 2/182 (1%)
Strand = Plus / Minus
Query: 278 accagggccgcgacgaggccggcgttgcctgaccagcgtcggctcgttctgcccgaag-t 336
||||| || |||||||| ||||||||||| ||||||||| |||||||||||| || || |
Sbjct: 197 accagcgcggcgacgagcccggcgttgcc-gaccagcgtgggctcgttctgcgcgtagct 139
Query: 337 gttgcgcgagtccttgaagccgtcgttcttgtcgggcccgccgaccatggnnnnnnnnag 396
| | | | ||||||||| |||||||||||| || ||||||||||||| ||
Sbjct: 138 gatcctggcgtccttgaacttgtcgttcttgtccgggccgccgaccatggcgcccgtgag 79
Query: 397 caggttggggtccgctttcttgctgtcgcgccacttgtagccgccggtgcacgagtactt 456
|| || ||||| || |||||| ||||||||||||| |||||||||||||||| ||||
Sbjct: 78 cacgtgagggtctgccttcttggaatcgcgccacttgttgccgccggtgcacgaggactt 19
Query: 457 ga 458
||
Sbjct: 18 ga 17
Score = 67.9 bits (34), Expect = 6e-010
Identities = 50/54 (92%), Gaps = 1/54 (1%)
Strand = Plus / Minus
Query: 182 ggcggcgcggcggggaacattgtgcggcacggcggagaacatggtgttcttgtc 235
||||| ||||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct: 292 ggcggggcggccgggaacatgg-gcggcacggcggagaacatggtgttcttgtc 240
>gb|BQ760319.1|BQ760319 EBpi07_SQ003_L24_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ003_L24 5', mRNA sequence
Length = 620
Score = 52.0 bits (26), Expect = 4e-005
Identities = 39/42 (92%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 194 gggaacattgtgcggcacggcggagaacatggtgttcttgtc 235
|||||||||| ||||||| || ||||||||||||||||||||
Sbjct: 443 gggaacattg-gcggcacagcagagaacatggtgttcttgtc 403
>gb|CB875548.1|CB875548 HX08K06w HX Hordeum vulgare subsp. vulgare cDNA clone HX08K06
3-PRIME, mRNA sequence
Length = 620
Score = 52.0 bits (26), Expect = 4e-005
Identities = 39/42 (92%), Gaps = 1/42 (2%)
Strand = Plus / Plus
Query: 194 gggaacattgtgcggcacggcggagaacatggtgttcttgtc 235
|||||||||| ||||||| || ||||||||||||||||||||
Sbjct: 236 gggaacattg-gcggcacagcagagaacatggtgttcttgtc 276
>gb|BQ761367.1|BQ761367 EBro06_SQ001_H02_R root, 3 week, drought-stressed, cv Optic, EBro06
Hordeum vulgare subsp. vulgare cDNA clone
EBro06_SQ001_H02 5', mRNA sequence
Length = 321
Score = 42.1 bits (21), Expect = 0.036
Identities = 40/45 (88%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 182 ggcggcgcggcggggaacattgtgcggcacggcggagaacatggt 226
||||| ||||| |||||||| | ||||||||||||| ||||||||
Sbjct: 278 ggcggggcggccgggaacatgg-gcggcacggcggaaaacatggt 321
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 118,596
Number of Sequences: 312970
Number of extensions: 118596
Number of successful extensions: 36105
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 36040
Number of HSP's gapped (non-prelim): 46
length of query: 1046
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1027
effective length of database: 169,188,109
effective search space: 173756187943
effective search space used: 173756187943
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)