BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 7297817.2.1
(687 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM441958.2|BM441958 EBan01_SQ001_C02_R anther, yellow st... 297 2e-079
gb|BI778564.2|BI778564 EBro07_SQ003_K16_R root, 3 week, red... 297 2e-079
gb|BQ764958.1|BQ764958 EBca01_SQ005_K07_R carpel, pre-anthe... 297 2e-079
gb|BU966878.1|BU966878 HB02K09r BC Hordeum vulgare subsp. v... 297 2e-079
gb|CA020560.1|CA020560 HZ36K19r HZ Hordeum vulgare subsp. v... 297 2e-079
gb|CA023672.1|CA023672 HZ47A11r HZ Hordeum vulgare subsp. v... 297 2e-079
gb|BI958362.1|BI958362 HVSMEn0014K03f Hordeum vulgare rachi... 289 6e-077
gb|BI959158.1|BI959158 HVSMEn0018G19f Hordeum vulgare rachi... 289 6e-077
gb|BI960409.1|BI960409 HVSMEn0024I03f Hordeum vulgare rachi... 289 6e-077
gb|BG343710.2|BG343710 HVSMEg0006I14f Hordeum vulgare pre-a... 289 6e-077
gb|BQ740073.1|BQ740073 HC04F05 HC Hordeum vulgare subsp. vu... 289 6e-077
gb|BE559393.2|BE559393 HV_CEb0024H10f Hordeum vulgare seedl... 266 9e-070
gb|BQ753967.1|BQ753967 EBca01_SQ002_G14_R carpel, pre-anthe... 258 2e-067
gb|BI959029.1|BI959029 HVSMEn0017M19f Hordeum vulgare rachi... 254 3e-066
gb|AJ434957.1|AJ434957 AJ434957 S00002 Hordeum vulgare subs... 222 1e-056
gb|BI960386.1|BI960386 HVSMEn0024G19f Hordeum vulgare rachi... 214 3e-054
gb|BU966964.1|BU966964 HB02O13r BC Hordeum vulgare subsp. v... 212 1e-053
gb|BI777027.2|BI777027 EBpi03_SQ001_L03_R pistil, 4 DPA, no... 194 3e-048
gb|BE558435.3|BE558435 HV_CEb0017K17f Hordeum vulgare seedl... 190 4e-047
gb|BI959865.1|BI959865 HVSMEn0022B20f Hordeum vulgare rachi... 180 4e-044
gb|AL499827.1|AL499827 AL499827 Hordeum vulgare Barke etiol... 174 2e-042
gb|BU968184.1|BU968184 HB06L04r BC Hordeum vulgare subsp. v... 129 1e-028
gb|AL450651.1|AL450651 AL450651 Hordeum vulgare Barke etiol... 123 8e-027
gb|BJ468199.1|BJ468199 BJ468199 K. Sato unpublished cDNA li... 82 3e-014
gb|BJ465086.1|BJ465086 BJ465086 K. Sato unpublished cDNA li... 42 0.024
gb|AH014393.1|SEG_AY643842S Hordeum vulgare subsp. vulgare ... 42 0.024
gb|AY643842.1|AY643842S1 Hordeum vulgare subsp. vulgare clo... 42 0.024
gb|BE422198.1|BE422198 HWM021cD.07r ITEC HWM Barley Leaf Li... 40 0.093
gb|AL507062.1|AL507062 AL507062 Hordeum vulgare Barke devel... 40 0.093
gb|AL507126.1|AL507126 AL507126 Hordeum vulgare Barke devel... 40 0.093
gb|AL508262.1|AL508262 AL508262 Hordeum vulgare Barke devel... 40 0.093
gb|AL508972.1|AL508972 AL508972 Hordeum vulgare Barke devel... 40 0.093
gb|BI950021.1|BI950021 HVSMEl0017M24f Hordeum vulgare spike... 40 0.093
gb|BG368769.2|BG368769 HVSMEi0020I21f Hordeum vulgare 20 DA... 40 0.093
gb|BJ463969.1|BJ463969 BJ463969 K. Sato unpublished cDNA li... 40 0.093
gb|BJ468091.1|BJ468091 BJ468091 K. Sato unpublished cDNA li... 40 0.093
gb|BQ472570.1|BQ472570 HB09C10T BC Hordeum vulgare subsp. v... 40 0.093
gb|BM370155.2|BM370155 EBro08_SQ003_C15_R root, 3 week, dro... 40 0.093
gb|BQ754192.1|BQ754192 EBca01_SQ003_C06_R carpel, pre-anthe... 40 0.093
gb|BQ764894.1|BQ764894 EBca01_SQ005_O02_R carpel, pre-anthe... 40 0.093
gb|BU968317.1|BU968317 HB07C10r BC Hordeum vulgare subsp. v... 40 0.093
gb|BU994510.1|BU994510 HM07E20r HM Hordeum vulgare subsp. v... 40 0.093
gb|BU998552.1|BU998552 HI11G19r HI Hordeum vulgare subsp. v... 40 0.093
gb|BU998664.1|BU998664 HI11M16r HI Hordeum vulgare subsp. v... 40 0.093
gb|CA022782.1|CA022782 HZ44F12r HZ Hordeum vulgare subsp. v... 40 0.093
gb|CA023200.1|CA023200 HZ45I12r HZ Hordeum vulgare subsp. v... 40 0.093
gb|CA028001.1|CA028001 HZ60L04r HZ Hordeum vulgare subsp. v... 40 0.093
gb|CA028366.1|CA028366 HZ61M08r HZ Hordeum vulgare subsp. v... 40 0.093
gb|CB881809.1|CB881809 HM10P01w HM Hordeum vulgare subsp. v... 40 0.093
gb|CK122362.1|CK122362 BES1824103a04 BES1824 Hordeum vulgar... 40 0.093
gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, co... 40 0.093
gb|BF621162.2|BF621162 HVSMEa0004L06f Hordeum vulgare seedl... 38 0.37
gb|BF622867.3|BF622867 HVSMEa0009K11f Hordeum vulgare seedl... 38 0.37
gb|BI948129.1|BI948129 HVSMEl0008E21f Hordeum vulgare spike... 38 0.37
gb|BF265908.2|BF265908 HV_CEa0013K11f Hordeum vulgare seedl... 38 0.37
gb|BE214513.2|BE214513 HV_CEb0003K18f Hordeum vulgare seedl... 38 0.37
gb|BE602281.3|BE602281 HVSMEh0098F09f Hordeum vulgare 5-45 ... 38 0.37
gb|AV923289.1|AV923289 AV923289 K. Sato unpublished cDNA li... 38 0.37
gb|AV924596.1|AV924596 AV924596 K. Sato unpublished cDNA li... 38 0.37
gb|AV925184.1|AV925184 AV925184 K. Sato unpublished cDNA li... 38 0.37
gb|AV925265.1|AV925265 AV925265 K. Sato unpublished cDNA li... 38 0.37
gb|AV928467.1|AV928467 AV928467 K. Sato unpublished cDNA li... 38 0.37
gb|AV929691.1|AV929691 AV929691 K. Sato unpublished cDNA li... 38 0.37
gb|AV930339.1|AV930339 AV930339 K. Sato unpublished cDNA li... 38 0.37
gb|AV930418.1|AV930418 AV930418 K. Sato unpublished cDNA li... 38 0.37
gb|AV932010.1|AV932010 AV932010 K. Sato unpublished cDNA li... 38 0.37
gb|AV934593.1|AV934593 AV934593 K. Sato unpublished cDNA li... 38 0.37
gb|BM816689.1|BM816689 HB01E02_T3.ab1 HB Hordeum vulgare su... 38 0.37
gb|BJ448573.1|BJ448573 BJ448573 K. Sato unpublished cDNA li... 38 0.37
gb|BJ456295.1|BJ456295 BJ456295 K. Sato unpublished cDNA li... 38 0.37
gb|BQ469061.1|BQ469061 HM03E08r HM Hordeum vulgare subsp. v... 38 0.37
gb|BM369253.2|BM369253 EBem07_SQ003_A21_R embryo, 28 DPA, n... 38 0.37
gb|BI777638.2|BI777638 EBro08_SQ001_C02_R root, 3 week, dro... 38 0.37
gb|BM370336.2|BM370336 EBro08_SQ003_O06_R root, 3 week, dro... 38 0.37
gb|BU981671.1|BU981671 HA24E19r HA Hordeum vulgare subsp. v... 38 0.37
gb|BU987297.1|BU987297 HF14F22r HF Hordeum vulgare subsp. v... 38 0.37
gb|BU996231.1|BU996231 HM12P03r HM Hordeum vulgare subsp. v... 38 0.37
gb|CV054692.1|CV054692 BNEL112c2 Barley EST endosperm libra... 38 0.37
gb|CV054772.1|CV054772 BNEL113b4 Barley EST endosperm libra... 38 0.37
gb|CV055747.1|CV055747 BNEL123a5 Barley EST endosperm libra... 38 0.37
gb|CV055910.1|CV055910 BNEL124g6 Barley EST endosperm libra... 38 0.37
gb|CV056696.1|CV056696 BNEL1F2 Barley EST endosperm library... 38 0.37
gb|CV056869.1|CV056869 BNEL21e10 Barley EST endosperm libra... 38 0.37
gb|CV057662.1|CV057662 BNEL2D12 Barley EST endosperm librar... 38 0.37
gb|CV058698.1|CV058698 BNEL3H11 Barley EST endosperm librar... 38 0.37
gb|CV059186.1|CV059186 BNEL45d10 Barley EST endosperm libra... 38 0.37
gb|CV060097.1|CV060097 BNEL54d2 Barley EST endosperm librar... 38 0.37
gb|CV060785.1|CV060785 BNEL61b5 Barley EST endosperm librar... 38 0.37
gb|CV061178.1|CV061178 BNEL65g7 Barley EST endosperm librar... 38 0.37
gb|CV061672.1|CV061672 BNEL70f10 Barley EST endosperm libra... 38 0.37
gb|CV063791.1|CV063791 BNEL93c10 Barley EST endosperm libra... 38 0.37
>gb|BM441958.2|BM441958 EBan01_SQ001_C02_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ001_C02 5', mRNA sequence
Length = 600
Score = 297 bits (150), Expect = 2e-079
Identities = 253/285 (88%), Gaps = 3/285 (1%)
Strand = Plus / Minus
Query: 379 ttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctgc 438
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 342 ttcagaggccaccgtagcggacgtcggagagcttggacttgagccacttgaagctgccac 283
Query: 439 ggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgcc 498
|||||| || ||||| |||| |||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 282 ggacggaggacttgagccgggcctgcgaggcgaacacgttgtacgacgccacgcgccgcc 223
Query: 499 gccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttg-ccg 557
|||||||||||||||||||||| | | |||| || ||||||||||||||||||||| |||
Sbjct: 222 gccgcttcgcctccgggtcgtcgccggcgctggggccgttgaagctgtacgacttgaccg 163
Query: 558 gcctgc--ccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagccgtagt 615
| ||| ||| || | ||| ||||||||||||||||||||||| ||||| |||||||
Sbjct: 162 ccgtgccaccgccgccacggcccacgtcctcgtagtcgtacccgccgccgcacccgtagt 103
Query: 616 acgccgacgagtgctcgtgcggcaccgacctgcacttctccatgg 660
|||||| || |||||||||||||||||| ||||||||||||||||
Sbjct: 102 acgccgccgcgtgctcgtgcggcaccgatctgcacttctccatgg 58
>gb|BI778564.2|BI778564 EBro07_SQ003_K16_R root, 3 week, reduced light, cv Optic, EBro07
Hordeum vulgare subsp. vulgare cDNA clone
EBro07_SQ003_K16 5', mRNA sequence
Length = 397
Score = 297 bits (150), Expect = 2e-079
Identities = 253/285 (88%), Gaps = 3/285 (1%)
Strand = Plus / Minus
Query: 379 ttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctgc 438
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 301 ttcagaggccaccgtagcggacgtcggagagcttggacttgagccacttgaagctgccac 242
Query: 439 ggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgcc 498
|||||| || ||||| |||| |||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 241 ggacggaggacttgagccgggcctgcgaggcgaacacgttgtacgacgccacgcgccgcc 182
Query: 499 gccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttg-ccg 557
|||||||||||||||||||||| | | |||| || ||||||||||||||||||||| |||
Sbjct: 181 gccgcttcgcctccgggtcgtcgccggcgctggggccgttgaagctgtacgacttgaccg 122
Query: 558 gcctgc--ccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagccgtagt 615
| ||| ||| || | ||| ||||||||||||||||||||||| ||||| |||||||
Sbjct: 121 ccgtgccaccgccgccacggcccacgtcctcgtagtcgtacccgccgccgcacccgtagt 62
Query: 616 acgccgacgagtgctcgtgcggcaccgacctgcacttctccatgg 660
|||||| || |||||||||||||||||| ||||||||||||||||
Sbjct: 61 acgccgccgcgtgctcgtgcggcaccgatctgcacttctccatgg 17
>gb|BQ764958.1|BQ764958 EBca01_SQ005_K07_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_K07 5', mRNA sequence
Length = 594
Score = 297 bits (150), Expect = 2e-079
Identities = 253/285 (88%), Gaps = 3/285 (1%)
Strand = Plus / Minus
Query: 379 ttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctgc 438
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 349 ttcagaggccaccgtagcggacgtcggagagcttggacttgagccacttgaagctgccac 290
Query: 439 ggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgcc 498
|||||| || ||||| |||| |||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 289 ggacggaggacttgagccgggcctgcgaggcgaacacgttgtacgacgccacgcgccgcc 230
Query: 499 gccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttg-ccg 557
|||||||||||||||||||||| | | |||| || ||||||||||||||||||||| |||
Sbjct: 229 gccgcttcgcctccgggtcgtcgccggcgctggggccgttgaagctgtacgacttgaccg 170
Query: 558 gcctgc--ccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagccgtagt 615
| ||| ||| || | ||| ||||||||||||||||||||||| ||||| |||||||
Sbjct: 169 ccgtgccaccgccgccacggcccacgtcctcgtagtcgtacccgccgccgcacccgtagt 110
Query: 616 acgccgacgagtgctcgtgcggcaccgacctgcacttctccatgg 660
|||||| || |||||||||||||||||| ||||||||||||||||
Sbjct: 109 acgccgccgcgtgctcgtgcggcaccgatctgcacttctccatgg 65
>gb|BU966878.1|BU966878 HB02K09r BC Hordeum vulgare subsp. vulgare cDNA clone HB02K09
5-PRIME, mRNA sequence
Length = 533
Score = 297 bits (150), Expect = 2e-079
Identities = 253/285 (88%), Gaps = 3/285 (1%)
Strand = Plus / Minus
Query: 379 ttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctgc 438
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 386 ttcagaggccaccgtagcggacgtcggagagcttggacttgagccacttgaagctgccac 327
Query: 439 ggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgcc 498
|||||| || ||||| |||| |||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 326 ggacggaggacttgagccgggcctgcgaggcgaacacgttgtacgacgccacgcgccgcc 267
Query: 499 gccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttg-ccg 557
|||||||||||||||||||||| | | |||| || ||||||||||||||||||||| |||
Sbjct: 266 gccgcttcgcctccgggtcgtcgccggcgctggggccgttgaagctgtacgacttgaccg 207
Query: 558 gcctgc--ccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagccgtagt 615
| ||| ||| || | ||| ||||||||||||||||||||||| ||||| |||||||
Sbjct: 206 ccgtgccaccgccgccacggcccacgtcctcgtagtcgtacccgccgccgcacccgtagt 147
Query: 616 acgccgacgagtgctcgtgcggcaccgacctgcacttctccatgg 660
|||||| || |||||||||||||||||| ||||||||||||||||
Sbjct: 146 acgccgccgcgtgctcgtgcggcaccgatctgcacttctccatgg 102
>gb|CA020560.1|CA020560 HZ36K19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ36K19
5-PRIME, mRNA sequence
Length = 486
Score = 297 bits (150), Expect = 2e-079
Identities = 253/285 (88%), Gaps = 3/285 (1%)
Strand = Plus / Minus
Query: 379 ttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctgc 438
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 355 ttcagaggccaccgtagcggacgtcggagagcttggacttgagccacttgaagctgccac 296
Query: 439 ggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgcc 498
|||||| || ||||| |||| |||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 295 ggacggaggacttgagccgggcctgcgaggcgaacacgttgtacgacgccacgcgccgcc 236
Query: 499 gccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttg-ccg 557
|||||||||||||||||||||| | | |||| || ||||||||||||||||||||| |||
Sbjct: 235 gccgcttcgcctccgggtcgtcgccggcgctggggccgttgaagctgtacgacttgaccg 176
Query: 558 gcctgc--ccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagccgtagt 615
| ||| ||| || | ||| ||||||||||||||||||||||| ||||| |||||||
Sbjct: 175 ccgtgccaccgccgccacggcccacgtcctcgtagtcgtacccgccgccgcacccgtagt 116
Query: 616 acgccgacgagtgctcgtgcggcaccgacctgcacttctccatgg 660
|||||| || |||||||||||||||||| ||||||||||||||||
Sbjct: 115 acgccgccgcgtgctcgtgcggcaccgatctgcacttctccatgg 71
>gb|CA023672.1|CA023672 HZ47A11r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ47A11
5-PRIME, mRNA sequence
Length = 547
Score = 297 bits (150), Expect = 2e-079
Identities = 253/285 (88%), Gaps = 3/285 (1%)
Strand = Plus / Minus
Query: 379 ttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctgc 438
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 393 ttcagaggccaccgtagcggacgtcggagagcttggacttgagccacttgaagctgccac 334
Query: 439 ggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgcc 498
|||||| || ||||| |||| |||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 333 ggacggaggacttgagccgggcctgcgaggcgaacacgttgtacgacgccacgcgccgcc 274
Query: 499 gccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttg-ccg 557
|||||||||||||||||||||| | | |||| || ||||||||||||||||||||| |||
Sbjct: 273 gccgcttcgcctccgggtcgtcgccggcgctggggccgttgaagctgtacgacttgaccg 214
Query: 558 gcctgc--ccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagccgtagt 615
| ||| ||| || | ||| ||||||||||||||||||||||| ||||| |||||||
Sbjct: 213 ccgtgccaccgccgccacggcccacgtcctcgtagtcgtacccgccgccgcacccgtagt 154
Query: 616 acgccgacgagtgctcgtgcggcaccgacctgcacttctccatgg 660
|||||| || |||||||||||||||||| ||||||||||||||||
Sbjct: 153 acgccgccgcgtgctcgtgcggcaccgatctgcacttctccatgg 109
>gb|BI958362.1|BI958362 HVSMEn0014K03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014K03f, mRNA sequence
Length = 654
Score = 289 bits (146), Expect = 6e-077
Identities = 252/285 (88%), Gaps = 3/285 (1%)
Strand = Plus / Minus
Query: 379 ttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctgc 438
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 376 ttcagaggccaccgtagcggacgtcggagagcttggacttgagccacttgaagctgccac 317
Query: 439 ggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgcc 498
|||||| || ||||| |||| |||||| ||||||||||||||||| |||||| || ||||
Sbjct: 316 ggacggaggacttgagccgggcctgcgaggcgaacacgttgtacgacgccacccgccgcc 257
Query: 499 gccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttg-ccg 557
|||||||||||||||||||||| | | |||| || ||||||||||||||||||||| |||
Sbjct: 256 gccgcttcgcctccgggtcgtcgccggcgctggggccgttgaagctgtacgacttgaccg 197
Query: 558 gcctgc--ccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagccgtagt 615
| ||| ||| || | ||| ||||||||||||||||||||||| ||||| |||||||
Sbjct: 196 ccgtgccaccgccgccacggcccacgtcctcgtagtcgtacccgccgccgcacccgtagt 137
Query: 616 acgccgacgagtgctcgtgcggcaccgacctgcacttctccatgg 660
|||||| || |||||||||||||||||| ||||||||||||||||
Sbjct: 136 acgccgccgcgtgctcgtgcggcaccgatctgcacttctccatgg 92
>gb|BI959158.1|BI959158 HVSMEn0018G19f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018G19f, mRNA sequence
Length = 647
Score = 289 bits (146), Expect = 6e-077
Identities = 252/285 (88%), Gaps = 3/285 (1%)
Strand = Plus / Minus
Query: 379 ttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctgc 438
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 357 ttcagaggccaccgtagcggacgtcggagagcttggacttgagccacttgaagctgccac 298
Query: 439 ggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgcc 498
|||||| || ||||| |||| |||||| ||||||||||||||||| |||||| || ||||
Sbjct: 297 ggacggaggacttgagccgggcctgcgaggcgaacacgttgtacgacgccacccgccgcc 238
Query: 499 gccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttg-ccg 557
|||||||||||||||||||||| | | |||| || ||||||||||||||||||||| |||
Sbjct: 237 gccgcttcgcctccgggtcgtcgccggcgctggggccgttgaagctgtacgacttgaccg 178
Query: 558 gcctgc--ccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagccgtagt 615
| ||| ||| || | ||| ||||||||||||||||||||||| ||||| |||||||
Sbjct: 177 ccgtgccaccgccgccacggcccacgtcctcgtagtcgtacccgccgccgcacccgtagt 118
Query: 616 acgccgacgagtgctcgtgcggcaccgacctgcacttctccatgg 660
|||||| || |||||||||||||||||| ||||||||||||||||
Sbjct: 117 acgccgccgcgtgctcgtgcggcaccgatctgcacttctccatgg 73
>gb|BI960409.1|BI960409 HVSMEn0024I03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024I03f, mRNA sequence
Length = 687
Score = 289 bits (146), Expect = 6e-077
Identities = 252/285 (88%), Gaps = 3/285 (1%)
Strand = Plus / Minus
Query: 379 ttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctgc 438
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 363 ttcagaggccaccgtagcggacgtcggagagcttggacttgagccacttgaagctgccac 304
Query: 439 ggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgcc 498
|||||| || ||||| |||| |||||| ||||||||||||||||| |||||| || ||||
Sbjct: 303 ggacggaggacttgagccgggcctgcgaggcgaacacgttgtacgacgccacccgccgcc 244
Query: 499 gccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttg-ccg 557
|||||||||||||||||||||| | | |||| || ||||||||||||||||||||| ||
Sbjct: 243 gccgcttcgcctccgggtcgtcgccggcgctggggccgttgaagctgtacgacttgaccc 184
Query: 558 gcctgc--ccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagccgtagt 615
||||| ||| || | ||| ||||||||||||||||||||||| ||||| |||||||
Sbjct: 183 ccctgccaccgccgccacggcccacgtcctcgtagtcgtacccgccgccgcacccgtagt 124
Query: 616 acgccgacgagtgctcgtgcggcaccgacctgcacttctccatgg 660
|||||| || |||||||||||||||||| ||||||||||||||||
Sbjct: 123 acgccgccgcgtgctcgtgcggcaccgatctgcacttctccatgg 79
>gb|BG343710.2|BG343710 HVSMEg0006I14f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0006I14f, mRNA sequence
Length = 965
Score = 289 bits (146), Expect = 6e-077
Identities = 252/285 (88%), Gaps = 3/285 (1%)
Strand = Plus / Minus
Query: 379 ttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctgc 438
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 308 ttcagaggccaccgtagcggacgtcggagagcttggacttgagccacttgaagctgccac 249
Query: 439 ggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgcc 498
|||||| || ||||| |||| |||||| ||||||||||||||||| |||||| || ||||
Sbjct: 248 ggacggaggacttgagccgggcctgcgaggcgaacacgttgtacgacgccacccgccgcc 189
Query: 499 gccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttg-ccg 557
|||||||||||||||||||||| | | |||| || ||||||||||||||||||||| |||
Sbjct: 188 gccgcttcgcctccgggtcgtcgccggcgctggggccgttgaagctgtacgacttgaccg 129
Query: 558 gcctgc--ccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagccgtagt 615
| ||| ||| || | ||| ||||||||||||||||||||||| ||||| |||||||
Sbjct: 128 ccgtgccaccgccgccacggcccacgtcctcgtagtcgtacccgccgccgcacccgtagt 69
Query: 616 acgccgacgagtgctcgtgcggcaccgacctgcacttctccatgg 660
|||||| || |||||||||||||||||| ||||||||||||||||
Sbjct: 68 acgccgccgcgtgctcgtgcggcaccgatctgcacttctccatgg 24
>gb|BQ740073.1|BQ740073 HC04F05 HC Hordeum vulgare subsp. vulgare cDNA clone HC04F05
similar to NP_192727.1| (NM_117057) putative protein
[Arabidopsis thaliana] gi|7487734|pir|T03993
hypothetical protein T5L19.20 - Arabidopsis thaliana
gi|4538992|emb|CAB39613.1| (AL04..., mRNA sequence
Length = 635
Score = 289 bits (146), Expect = 6e-077
Identities = 252/285 (88%), Gaps = 3/285 (1%)
Strand = Plus / Minus
Query: 379 ttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctgc 438
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 354 ttcagaggccaccgtagcggacgtcggagagcttggacttgagccacttgaagctgccac 295
Query: 439 ggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgcc 498
|||||| || ||||| |||| |||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 294 ggacggaggacttgagccgggcctgcgaggcgaacacgttgtacgacgccacgcgccgcc 235
Query: 499 gccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttg-ccg 557
|||||||||||||||||||||| | | |||| || ||||||||||||||||||||| |||
Sbjct: 234 gccgcttcgcctccgggtcgtcgccggcgctggggccgttgaagctgtacgacttgaccg 175
Query: 558 gcctgc--ccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagccgtagt 615
| ||| ||| || | ||| ||||||| ||||||||||||||| ||||| |||||||
Sbjct: 174 ccgtgccaccgccgccacggcccacgtcctagtagtcgtacccgccgccgcacccgtagt 115
Query: 616 acgccgacgagtgctcgtgcggcaccgacctgcacttctccatgg 660
|||||| || |||||||||||||||||| ||||||||||||||||
Sbjct: 114 acgccgccgcgtgctcgtgcggcaccgatctgcacttctccatgg 70
>gb|BE559393.2|BE559393 HV_CEb0024H10f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024H10f, mRNA sequence
Length = 942
Score = 266 bits (134), Expect = 9e-070
Identities = 249/285 (87%), Gaps = 3/285 (1%)
Strand = Plus / Minus
Query: 379 ttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctgc 438
|||||||||||||||||||||||||| ||| ||||||||||| |||||||| ||||| |
Sbjct: 372 ttcagaggccaccgtagcggacgtcgaagagcttggacttgacccacttgaagctgccac 313
Query: 439 ggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgcc 498
||||| || ||||| |||| |||||| ||||||||||||||||| |||||| || ||||
Sbjct: 312 ggacgaaggacttgagccgggcctgcgaggcgaacacgttgtacgacgccacccgccgcc 253
Query: 499 gccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttg-ccg 557
|||||||||||||||||||||| | | |||| || ||||||||||||||||||||| |||
Sbjct: 252 gccgcttcgcctccgggtcgtcgccggcgctggggccgttgaagctgtacgacttgaccg 193
Query: 558 gcctgc--ccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagccgtagt 615
| ||| ||| || | ||| ||||||||||||||||||||||| ||||| |||||||
Sbjct: 192 ccgtgccaccgccgccacggcccacgtcctcgtagtcgtacccgccgccgcacccgtagt 133
Query: 616 acgccgacgagtgctcgtgcggcaccgacctgcacttctccatgg 660
|||||| || |||||||||||||||||| ||||||||||||||||
Sbjct: 132 acgccgccgcgtgctcgtgcggcaccgatctgcacttctccatgg 88
>gb|BQ753967.1|BQ753967 EBca01_SQ002_G14_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ002_G14 5', mRNA sequence
Length = 340
Score = 258 bits (130), Expect = 2e-067
Identities = 248/285 (87%), Gaps = 3/285 (1%)
Strand = Plus / Minus
Query: 379 ttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctgc 438
|||||||||||||||||||||||||| ||| ||||||||| ||||||| || ||||| |
Sbjct: 337 ttcagaggccaccgtagcggacgtcgaagagcttggacttaagccactagaagctgccac 278
Query: 439 ggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgcc 498
|||||| || ||||| |||| | |||| ||||||||||||||||| ||||||||| ||||
Sbjct: 277 ggacggaggacttgagccgggcttgcgaggcgaacacgttgtacgacgccacgcgccgcc 218
Query: 499 gccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttg-ccg 557
|||||||||||||||||||||| | | |||| || ||||||||||||||||||||| |||
Sbjct: 217 gccgcttcgcctccgggtcgtcgccggcgctggggccgttgaagctgtacgacttgaccg 158
Query: 558 gcctgc--ccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagccgtagt 615
| ||| ||| || | ||| ||||| ||||||||||||||||| ||||| |||||||
Sbjct: 157 ccgtgccaccgccgccacggcccacgtcatcgtagtcgtacccgccgccgcacccgtagt 98
Query: 616 acgccgacgagtgctcgtgcggcaccgacctgcacttctccatgg 660
|||||| || |||||||||||||||||| ||||||||||||||||
Sbjct: 97 acgccgccgcgtgctcgtgcggcaccgatctgcacttctccatgg 53
>gb|BI959029.1|BI959029 HVSMEn0017M19f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0017M19f, mRNA sequence
Length = 652
Score = 254 bits (128), Expect = 3e-066
Identities = 243/279 (87%), Gaps = 3/279 (1%)
Strand = Plus / Minus
Query: 379 ttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctgc 438
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 381 ttcagaggccaccgtagcggacgtcggagagcttggacttgagccacttgaagctgccac 322
Query: 439 ggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgcc 498
|||||| || ||||| |||| |||||| ||||||||||||||||| |||||| || ||||
Sbjct: 321 ggacggaggacttgagccgggcctgcgaggcgaacacgttgtacgacgccacccgccgcc 262
Query: 499 gccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttg-ccg 557
|||||||||||||||||||||| | | |||| || ||||||||||||||||||||| |||
Sbjct: 261 gccgcttcgcctccgggtcgtcgccggcgctggggccgttgaagctgtacgacttgaccg 202
Query: 558 gcctgc--ccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagccgtagt 615
| ||| ||| || | ||| ||||| | ||||||||||||||| ||||| |||||||
Sbjct: 201 ccgtgccaccgccgccacggcccacgtcatggtagtcgtacccgccgccgcacccgtagt 142
Query: 616 acgccgacgagtgctcgtgcggcaccgacctgcacttct 654
|||||| || |||||||||||||||||| |||||||||
Sbjct: 141 acgccgccgcgtgctcgtgcggcaccgatttgcacttct 103
>gb|AJ434957.1|AJ434957 AJ434957 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200007A03F1, mRNA sequence
Length = 515
Score = 222 bits (112), Expect = 1e-056
Identities = 160/176 (90%)
Strand = Plus / Minus
Query: 379 ttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctgc 438
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 219 ttcagaggccaccgtagcggacgtcggagagcttggacttgagccacttgaagctgccac 160
Query: 439 ggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgcc 498
|||||| || ||||| |||| |||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 159 ggacggaggacttgagccgggcctgcgaggcgaacacgttgtacgacgccacgcgccgcc 100
Query: 499 gccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttg 554
|||||||||||||||||||||| | | |||| || |||||||||||||||||||||
Sbjct: 99 gccgcttcgcctccgggtcgtcgccggcgctggggccgttgaagctgtacgacttg 44
>gb|BI960386.1|BI960386 HVSMEn0024G19f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024G19f, mRNA sequence
Length = 653
Score = 214 bits (108), Expect = 3e-054
Identities = 159/176 (90%)
Strand = Plus / Minus
Query: 379 ttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctgc 438
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 365 ttcagaggccaccgtagcggacgtcggagagcttggacttgagccacttgaagctgccac 306
Query: 439 ggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgcc 498
|||||| || ||||| |||| |||||| ||||||||||||||||| |||||| || ||||
Sbjct: 305 ggacggaggacttgagccgggcctgcgaggcgaacacgttgtacgacgccacccgccgcc 246
Query: 499 gccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttg 554
|||||||||||||||||||||| | | |||| || |||||||||||||||||||||
Sbjct: 245 gccgcttcgcctccgggtcgtcgccggcgctggggccgttgaagctgtacgacttg 190
Score = 99.6 bits (50), Expect = 1e-019
Identities = 68/74 (91%)
Strand = Plus / Minus
Query: 579 acgtcctcgtagtcgtacccgcctccgcagccgtagtacgccgacgagtgctcgtgcggc 638
||||||| ||||||||||||||| ||||| ||||||||||||| || |||||||||||||
Sbjct: 162 acgtcctggtagtcgtacccgccgccgcacccgtagtacgccgccgcgtgctcgtgcggc 103
Query: 639 accgacctgcactt 652
||||| ||||||||
Sbjct: 102 accgatctgcactt 89
>gb|BU966964.1|BU966964 HB02O13r BC Hordeum vulgare subsp. vulgare cDNA clone HB02O13
5-PRIME, mRNA sequence
Length = 331
Score = 212 bits (107), Expect = 1e-053
Identities = 198/226 (87%), Gaps = 3/226 (1%)
Strand = Plus / Minus
Query: 438 cggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgc 497
||||||| || ||||| |||| |||||| ||||||||||||||||| ||||||||| |||
Sbjct: 327 cggacggaggacttgagccgggcctgcgaggcgaacacgttgtacgacgccacgcgccgc 268
Query: 498 cgccgcttcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttg-cc 556
||||||||||||||||||||||| | | |||| || ||||||||||||||||||||| ||
Sbjct: 267 cgccgcttcgcctccgggtcgtcgccggcgctggggccgttgaagctgtacgacttgacc 208
Query: 557 ggcctgc--ccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagccgtag 614
| | ||| ||| || | ||| ||||||||||||||||||||||| ||||| ||||||
Sbjct: 207 gccgtgccaccgccgccacggcccacgtcctcgtagtcgtacccgccgccgcacccgtag 148
Query: 615 tacgccgacgagtgctcgtgcggcaccgacctgcacttctccatgg 660
||||||| || |||||||||||||||||| ||||||||||||||||
Sbjct: 147 tacgccgccgcgtgctcgtgcggcaccgatctgcacttctccatgg 102
>gb|BI777027.2|BI777027 EBpi03_SQ001_L03_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ001_L03 5', mRNA sequence
Length = 284
Score = 194 bits (98), Expect = 3e-048
Identities = 131/142 (92%)
Strand = Plus / Minus
Query: 379 ttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctgc 438
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 172 ttcagaggccaccgtagcggacgtcggagagcttggacttgagccacttgaagctgccac 113
Query: 439 ggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgcc 498
|||||| || ||||| |||| |||||| ||||||||||||||||| ||||||||| ||||
Sbjct: 112 ggacggaggacttgagccgggcctgcgaggcgaacacgttgtacgacgccacgcgccgcc 53
Query: 499 gccgcttcgcctccgggtcgtc 520
||||||||||||||||||||||
Sbjct: 52 gccgcttcgcctccgggtcgtc 31
>gb|BE558435.3|BE558435 HV_CEb0017K17f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0017K17f, mRNA sequence
Length = 748
Score = 190 bits (96), Expect = 4e-047
Identities = 235/279 (84%), Gaps = 3/279 (1%)
Strand = Plus / Minus
Query: 385 ggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctgcggacgg 444
|||||||||| ||||||||||||| |||||||||||||||||| | ||||| |||||||
Sbjct: 366 ggccaccgtatcggacgtcggagagcttggacttgagccactttaagctgcctcggacgg 307
Query: 445 tggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgccgccgct 504
|| ||||| |||| |||||| ||||| |||||||| | |||||| || | | ||||||
Sbjct: 306 aggacttgagccgggcctgcgaggcgatcacgttgtttgacgccacccgccactgccgct 247
Query: 505 tcgcctccgggtcgtcccggccgctcggcccgttgaagctgtacgacttg-ccggcctgc 563
|||||| ||||||||| | | || | || ||||||||||||||||||||| ||| | |||
Sbjct: 246 tcgcctacgggtcgtcgccggcgttggggccgttgaagctgtacgacttgaccgccgtgc 187
Query: 564 --ccgggcccgccgccgacgtcctcgtagtcgtacccgcctccgcagccgtagtacgccg 621
||| || | ||| ||||||| ||||||||||||||| ||||| | |||||||||||
Sbjct: 186 caccgccgccacggcccacgtccttgtagtcgtacccgccgccgcacctgtagtacgccg 127
Query: 622 acgagtgctcgtgcggcaccgacctgcacttctccatgg 660
|| |||||||||||||||||| ||||||||||||||||
Sbjct: 126 ccgcgtgctcgtgcggcaccgatctgcacttctccatgg 88
>gb|BI959865.1|BI959865 HVSMEn0022B20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0022B20f, mRNA sequence
Length = 644
Score = 180 bits (91), Expect = 4e-044
Identities = 129/142 (90%)
Strand = Plus / Minus
Query: 379 ttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctgc 438
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 341 ttcagaggccaccgtagcggacgtcggagagcttggacttgagccacttgaagctgccac 282
Query: 439 ggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgcc 498
|||||| || ||||| |||| |||||| ||||||||||||||| | |||||| || ||||
Sbjct: 281 ggacggaggacttgagccgggcctgcgaggcgaacacgttgtangacgccacccgccgcc 222
Query: 499 gccgcttcgcctccgggtcgtc 520
||||||||||||||||||||||
Sbjct: 221 gccgcttcgcctccgggtcgtc 200
Score = 123 bits (62), Expect = 8e-027
Identities = 77/82 (93%)
Strand = Plus / Minus
Query: 579 acgtcctcgtagtcgtacccgcctccgcagccgtagtacgccgacgagtgctcgtgcggc 638
||||||||||||||||||||||| ||||| ||||||||||||| || |||||||||||||
Sbjct: 137 acgtcctcgtagtcgtacccgccgccgcacccgtagtacgccgccgcgtgctcgtgcggc 78
Query: 639 accgacctgcacttctccatgg 660
||||| ||||||||||||||||
Sbjct: 77 accgatctgcacttctccatgg 56
>gb|AL499827.1|AL499827 AL499827 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03J24r 3', mRNA sequence
Length = 608
Score = 174 bits (88), Expect = 2e-042
Identities = 126/139 (90%)
Strand = Plus / Plus
Query: 379 ttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctgc 438
|||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 456 ttcagaggccaccgtancggacgtcggagagcttggacttgagccacttgaagctgccac 515
Query: 439 ggacggtggtcttgatccggccctgcgtggcgaacacgttgtacgccgccacgcggcgcc 498
|||||| || ||||| |||| |||||| ||||||||||||||||| ||||| ||| ||||
Sbjct: 516 ggacggaggacttgagccgggcctgcgaggcgaacacgttgtacgacgccaagcgccgcc 575
Query: 499 gccgcttcgcctccgggtc 517
|||||||||||||||||||
Sbjct: 576 gccgcttcgcctccgggtc 594
>gb|BU968184.1|BU968184 HB06L04r BC Hordeum vulgare subsp. vulgare cDNA clone HB06L04
5-PRIME, mRNA sequence
Length = 410
Score = 129 bits (65), Expect = 1e-028
Identities = 92/101 (91%)
Strand = Plus / Minus
Query: 379 ttcagaggccaccgtagcggacgtcggagaacttggacttgagccacttgacgctgctgc 438
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct: 111 ttcagaggccaccgtagcggacgtcggagagcttggacttgagccacttgaagctgccac 52
Query: 439 ggacggtggtcttgatccggccctgcgtggcgaacacgttg 479
|||||| || ||||| |||| |||||| |||||||||||||
Sbjct: 51 ggacggaggacttgagccgggcctgcgaggcgaacacgttg 11
>gb|AL450651.1|AL450651 AL450651 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03J24u 5', mRNA sequence
Length = 137
Score = 123 bits (62), Expect = 8e-027
Identities = 77/82 (93%)
Strand = Plus / Minus
Query: 579 acgtcctcgtagtcgtacccgcctccgcagccgtagtacgccgacgagtgctcgtgcggc 638
||||||||||||||||||||||| ||||| ||||||||||||| || |||||||||||||
Sbjct: 133 acgtcctcgtagtcgtacccgccgccgcacccgtagtacgccgccgcgtgctcgtgcggc 74
Query: 639 accgacctgcacttctccatgg 660
||||| ||||||||||||||||
Sbjct: 73 accgatctgcacttctccatgg 52
>gb|BJ468199.1|BJ468199 BJ468199 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37j12 3', mRNA sequence
Length = 460
Score = 81.8 bits (41), Expect = 3e-014
Identities = 44/45 (97%)
Strand = Plus / Plus
Query: 379 ttcagaggccaccgtagcggacgtcggagaacttggacttgagcc 423
|||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 415 ttcagaggccaccgtagcggacgtcggagagcttggacttgagcc 459
>gb|BJ465086.1|BJ465086 BJ465086 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37j12 5', mRNA sequence
Length = 462
Score = 42.1 bits (21), Expect = 0.024
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 379 ttcagaggccaccgtagcgga 399
|||||||||||||||||||||
Sbjct: 21 ttcagaggccaccgtagcgga 1
>gb|AH014393.1|SEG_AY643842S Hordeum vulgare subsp. vulgare clones BAC 519K7, 799C8, and 122A5
hardness locus region
Length = 302994
Score = 42.1 bits (21), Expect = 0.024
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 664 ctcctcctcttcttcttcctt 684
|||||||||||||||||||||
Sbjct: 10955 ctcctcctcttcttcttcctt 10975
>gb|AY643842.1|AY643842S1 Hordeum vulgare subsp. vulgare clone BAC 519K7 hardness locus region
Length = 12998
Score = 42.1 bits (21), Expect = 0.024
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 664 ctcctcctcttcttcttcctt 684
|||||||||||||||||||||
Sbjct: 10955 ctcctcctcttcttcttcctt 10975
>gb|BE422198.1|BE422198 HWM021cD.07r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM021cD.07, mRNA sequence
Length = 1326
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 664 ctcctcctcttcttcttcct 683
||||||||||||||||||||
Sbjct: 1149 ctcctcctcttcttcttcct 1130
>gb|AL507062.1|AL507062 AL507062 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05C17T 5',
mRNA sequence
Length = 639
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 142 tcctcctcctcttcttcttc 123
>gb|AL507126.1|AL507126 AL507126 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05K01T 5',
mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 142 tcctcctcctcttcttcttc 123
>gb|AL508262.1|AL508262 AL508262 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08E02V 5',
mRNA sequence
Length = 599
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 96 tcctcctcctcttcttcttc 77
>gb|AL508972.1|AL508972 AL508972 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY10F09V 5',
mRNA sequence
Length = 598
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 114 tcctcctcctcttcttcttc 95
>gb|BI950021.1|BI950021 HVSMEl0017M24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0017M24f, mRNA sequence
Length = 448
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 142 tcctcctcctcttcttcttc 123
>gb|BG368769.2|BG368769 HVSMEi0020I21f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0020I21f, mRNA sequence
Length = 830
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 136 tcctcctcctcttcttcttc 117
>gb|BJ463969.1|BJ463969 BJ463969 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags31e15 5', mRNA sequence
Length = 536
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 335 tcctcctcctcttcttcttc 316
>gb|BJ468091.1|BJ468091 BJ468091 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37b01 3', mRNA sequence
Length = 633
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 208 agtagtagtagtatatatac 227
||||||||||||||||||||
Sbjct: 112 agtagtagtagtatatatac 93
>gb|BQ472570.1|BQ472570 HB09C10T BC Hordeum vulgare subsp. vulgare cDNA clone HB09C10
5-PRIME, mRNA sequence
Length = 699
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 208 agtagtagtagtatatatac 227
||||||||||||||||||||
Sbjct: 634 agtagtagtagtatatatac 653
>gb|BM370155.2|BM370155 EBro08_SQ003_C15_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ003_C15 5', mRNA sequence
Length = 562
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 664 ctcctcctcttcttcttcct 683
||||||||||||||||||||
Sbjct: 461 ctcctcctcttcttcttcct 442
>gb|BQ754192.1|BQ754192 EBca01_SQ003_C06_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ003_C06 5', mRNA sequence
Length = 354
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 139 tcctcctcctcttcttcttc 120
>gb|BQ764894.1|BQ764894 EBca01_SQ005_O02_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_O02 5', mRNA sequence
Length = 567
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 150 tcctcctcctcttcttcttc 131
>gb|BU968317.1|BU968317 HB07C10r BC Hordeum vulgare subsp. vulgare cDNA clone HB07C10
5-PRIME, mRNA sequence
Length = 656
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 208 agtagtagtagtatatatac 227
||||||||||||||||||||
Sbjct: 634 agtagtagtagtatatatac 653
>gb|BU994510.1|BU994510 HM07E20r HM Hordeum vulgare subsp. vulgare cDNA clone HM07E20
5-PRIME, mRNA sequence
Length = 632
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 160 tcctcctcctcttcttcttc 141
>gb|BU998552.1|BU998552 HI11G19r HI Hordeum vulgare subsp. vulgare cDNA clone HI11G19
5-PRIME, mRNA sequence
Length = 631
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 149 tcctcctcctcttcttcttc 130
>gb|BU998664.1|BU998664 HI11M16r HI Hordeum vulgare subsp. vulgare cDNA clone HI11M16
5-PRIME, mRNA sequence
Length = 673
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 149 tcctcctcctcttcttcttc 130
>gb|CA022782.1|CA022782 HZ44F12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ44F12
5-PRIME, mRNA sequence
Length = 527
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 159 tcctcctcctcttcttcttc 140
>gb|CA023200.1|CA023200 HZ45I12r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ45I12
5-PRIME, mRNA sequence
Length = 537
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 159 tcctcctcctcttcttcttc 140
>gb|CA028001.1|CA028001 HZ60L04r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ60L04
5-PRIME, mRNA sequence
Length = 438
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 150 tcctcctcctcttcttcttc 131
>gb|CA028366.1|CA028366 HZ61M08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61M08
5-PRIME, mRNA sequence
Length = 603
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 149 tcctcctcctcttcttcttc 130
>gb|CB881809.1|CB881809 HM10P01w HM Hordeum vulgare subsp. vulgare cDNA clone HM10P01
3-PRIME, mRNA sequence
Length = 221
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 51 tcctcctcctcttcttcttc 70
>gb|CK122362.1|CK122362 BES1824103a04 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010A043 5-PRIME, mRNA sequence
Length = 779
Score = 40.1 bits (20), Expect = 0.093
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 152 tcctcctcctcttcttcttc 133
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 114,675
Number of Sequences: 312970
Number of extensions: 114675
Number of successful extensions: 32780
Number of sequences better than 0.5: 92
Number of HSP's better than 0.5 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32457
Number of HSP's gapped (non-prelim): 314
length of query: 687
length of database: 175,134,539
effective HSP length: 19
effective length of query: 668
effective length of database: 169,188,109
effective search space: 113017656812
effective search space used: 113017656812
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)