BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 6293482.2.1
(2042 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE196002.1|BE196002 HVSMEh0091B12f Hordeum vulgare 5-45 ... 92 9e-017
gb|BJ464550.1|BJ464550 BJ464550 K. Sato unpublished cDNA li... 76 5e-012
gb|BF065379.1|BF065379 HV_CEb0012E10f Hordeum vulgare seedl... 74 2e-011
gb|CA009631.1|CA009631 HU14K18r HU Hordeum vulgare subsp. v... 74 2e-011
gb|CA018489.1|CA018489 HV08M10r HV Hordeum vulgare subsp. v... 68 1e-009
gb|AV925268.1|AV925268 AV925268 K. Sato unpublished cDNA li... 62 8e-008
gb|AV932347.1|AV932347 AV932347 K. Sato unpublished cDNA li... 62 8e-008
gb|AV934261.1|AV934261 AV934261 K. Sato unpublished cDNA li... 62 8e-008
gb|BG300331.1|BG300331 HVSMEb0012I19f Hordeum vulgare seedl... 58 1e-006
gb|BE215637.1|BE215637 HV_CEb0007H18f Hordeum vulgare seedl... 58 1e-006
gb|BF259330.2|BF259330 HVSMEf0019E22f Hordeum vulgare seedl... 56 5e-006
gb|BI952693.1|BI952693 HVSMEm0007G18f Hordeum vulgare green... 56 5e-006
gb|BJ471507.1|BJ471507 BJ471507 K. Sato unpublished cDNA li... 56 5e-006
gb|AV923900.1|AV923900 AV923900 K. Sato unpublished cDNA li... 52 7e-005
gb|BJ547848.1|BJ547848 BJ547848 K. Sato unpublished cDNA li... 52 7e-005
gb|BF628280.2|BF628280 HVSMEb0003J20f Hordeum vulgare seedl... 50 3e-004
gb|BG300903.1|BG300903 HVSMEb0018O05f Hordeum vulgare seedl... 50 3e-004
gb|BG344914.2|BG344914 HVSMEg0016N10f Hordeum vulgare pre-a... 50 3e-004
gb|BF261803.3|BF261803 HV_CEa0002E08f Hordeum vulgare seedl... 50 3e-004
gb|BQ461073.1|BQ461073 HE01E18r HE Hordeum vulgare subsp. v... 50 3e-004
gb|CA009374.1|CA009374 HU13P05r HU Hordeum vulgare subsp. v... 50 3e-004
gb|BF620376.2|BF620376 HVSMEc0019K12f Hordeum vulgare seedl... 46 0.005
gb|BF254550.2|BF254550 HVSMEf0004F12f Hordeum vulgare seedl... 46 0.005
gb|AV915997.1|AV915997 AV915997 K. Sato unpublished cDNA li... 46 0.005
gb|AV921112.1|AV921112 AV921112 K. Sato unpublished cDNA li... 46 0.005
gb|AV927306.1|AV927306 AV927306 K. Sato unpublished cDNA li... 46 0.005
gb|BJ463196.1|BJ463196 BJ463196 K. Sato unpublished cDNA li... 46 0.005
gb|BJ465003.1|BJ465003 BJ465003 K. Sato unpublished cDNA li... 46 0.005
gb|CA030582.1|CA030582 HX07H18r HX Hordeum vulgare subsp. v... 46 0.005
gb|AV836496.1|AV836496 AV836496 K. Sato unpublished cDNA li... 44 0.018
gb|BF253422.2|BF253422 HVSMEf0001G02f Hordeum vulgare seedl... 44 0.018
gb|BG343494.1|BG343494 HVSMEg0005O16f Hordeum vulgare pre-a... 44 0.018
gb|BI956493.1|BI956493 HVSMEn0003M04f Hordeum vulgare rachi... 44 0.018
gb|BI958239.1|BI958239 HVSMEn0014A11f Hordeum vulgare rachi... 44 0.018
gb|BI960513.1|BI960513 HVSMEn0024N22f Hordeum vulgare rachi... 44 0.018
gb|AV914110.1|AV914110 AV914110 K. Sato unpublished cDNA li... 44 0.018
gb|AV918446.1|AV918446 AV918446 K. Sato unpublished cDNA li... 44 0.018
gb|BI776301.2|BI776301 EBem04_SQ001_H10_R embryo, 12 DPA, n... 44 0.018
gb|BI780959.2|BI780959 EBma05_SQ001_L03_R maternal, 12 DPA,... 44 0.018
gb|BM371283.2|BM371283 EBma08_SQ002_C05_R maternal, 28 DPA,... 44 0.018
gb|BQ755905.1|BQ755905 EBed07_SQ003_M24_R endosperm, 28 DPA... 44 0.018
gb|BQ760761.1|BQ760761 EBro03_SQ003_G10_R root, 3 week, wat... 44 0.018
gb|BQ768037.1|BQ768037 EBro08_SQ010_D14_R root, 3 week, dro... 44 0.018
gb|BU988343.1|BU988343 HF17F20r HF Hordeum vulgare subsp. v... 44 0.018
gb|CA013595.1|CA013595 HT08P07r HT Hordeum vulgare subsp. v... 44 0.018
gb|CA013664.1|CA013664 HT09C08r HT Hordeum vulgare subsp. v... 44 0.018
gb|AU252324.1|AU252324 AU252324 salt-stressed barley root c... 44 0.018
gb|BE427757.1|BE427757 PSR6709 ITEC PSR Barley Inflorescenc... 42 0.071
gb|BE427829.1|BE427829 PSR6823 ITEC PSR Barley Inflorescenc... 42 0.071
gb|BE427856.1|BE427856 PSR6858 ITEC PSR Barley Inflorescenc... 42 0.071
gb|BE427880.1|BE427880 PSR6887 ITEC PSR Barley Inflorescenc... 42 0.071
gb|BG299652.1|BG299652 HVSMEa0021E10f Hordeum vulgare seedl... 42 0.071
gb|BF627742.1|BF627742 HVSMEb0005K21f Hordeum vulgare seedl... 42 0.071
gb|BG300557.1|BG300557 HVSMEb0017H18f Hordeum vulgare seedl... 42 0.071
gb|BG301073.1|BG301073 HVSMEb0019H09f Hordeum vulgare seedl... 42 0.071
gb|BF619935.2|BF619935 HVSMEc0009L20f Hordeum vulgare seedl... 42 0.071
gb|BG367964.1|BG367964 HVSMEi0015B10f Hordeum vulgare 20 DA... 42 0.071
gb|BI951511.1|BI951511 HVSMEm0001D04f Hordeum vulgare green... 42 0.071
gb|BE216646.1|BE216646 HV_CEb0011B08f Hordeum vulgare seedl... 42 0.071
gb|BF264957.1|BF264957 HV_CEa0010N16f Hordeum vulgare seedl... 42 0.071
gb|BF264745.2|BF264745 HV_CEa0010E04f Hordeum vulgare seedl... 42 0.071
gb|BF065850.2|BF065850 HV_CEb0014C16f Hordeum vulgare seedl... 42 0.071
gb|BI958372.1|BI958372 HVSMEn0014K13f Hordeum vulgare rachi... 42 0.071
gb|BF258490.3|BF258490 HVSMEf0015N19f Hordeum vulgare seedl... 42 0.071
gb|BQ462795.1|BQ462795 HI02A12r HI Hordeum vulgare subsp. v... 42 0.071
gb|BQ463580.1|BQ463580 HI05M10r HI Hordeum vulgare subsp. v... 42 0.071
gb|BQ470505.1|BQ470505 HX03C23r HX Hordeum vulgare subsp. v... 42 0.071
gb|BQ471386.1|BQ471386 HV02E14r HV Hordeum vulgare subsp. v... 42 0.071
gb|BQ471974.1|BQ471974 HV04A20r HV Hordeum vulgare subsp. v... 42 0.071
gb|BM369638.2|BM369638 EBem07_SQ004_D04_R embryo, 28 DPA, n... 42 0.071
gb|BM097173.2|BM097173 EBpi07_SQ002_K05_R pistil, 12 DPA, n... 42 0.071
gb|BU997839.1|BU997839 HI09C20r HI Hordeum vulgare subsp. v... 42 0.071
gb|CA001873.1|CA001873 HS05N14r HS Hordeum vulgare subsp. v... 42 0.071
gb|CA001916.1|CA001916 HS05P15r HS Hordeum vulgare subsp. v... 42 0.071
gb|CA004795.1|CA004795 HS18L11r HS Hordeum vulgare subsp. v... 42 0.071
gb|CA011920.1|CA011920 HT03O16r HT Hordeum vulgare subsp. v... 42 0.071
gb|CA018151.1|CA018151 HV07L02r HV Hordeum vulgare subsp. v... 42 0.071
gb|CA022211.1|CA022211 HZ42H16r HZ Hordeum vulgare subsp. v... 42 0.071
gb|CA022573.1|CA022573 HZ43K17r HZ Hordeum vulgare subsp. v... 42 0.071
gb|CA023973.1|CA023973 HZ48A01r HZ Hordeum vulgare subsp. v... 42 0.071
gb|CV056869.1|CV056869 BNEL21e10 Barley EST endosperm libra... 42 0.071
gb|CV057662.1|CV057662 BNEL2D12 Barley EST endosperm librar... 42 0.071
gb|CV058698.1|CV058698 BNEL3H11 Barley EST endosperm librar... 42 0.071
gb|CV059186.1|CV059186 BNEL45d10 Barley EST endosperm libra... 42 0.071
gb|CV063791.1|CV063791 BNEL93c10 Barley EST endosperm libra... 42 0.071
gb|CK124266.1|CK124266 BES1824108c11 BES1824 Hordeum vulgar... 42 0.071
gb|BE420993.1|BE420993 HWM004.F10 ITEC HWM Barley Leaf Libr... 40 0.28
gb|AL508864.1|AL508864 AL508864 Hordeum vulgare Barke devel... 40 0.28
gb|BF626578.2|BF626578 HVSMEa0018M17f Hordeum vulgare seedl... 40 0.28
gb|BG299398.1|BG299398 HVSMEa0019M17f Hordeum vulgare seedl... 40 0.28
gb|BF253916.1|BF253916 HVSMEf0002H19f Hordeum vulgare seedl... 40 0.28
gb|BF618562.2|BF618562 HVSMEc0006C15f Hordeum vulgare seedl... 40 0.28
gb|BF617607.2|BF617607 HVSMEc0018E10f Hordeum vulgare seedl... 40 0.28
gb|BF255201.2|BF255201 HVSMEf0006D16f Hordeum vulgare seedl... 40 0.28
gb|BF257295.2|BF257295 HVSMEf0012H10f Hordeum vulgare seedl... 40 0.28
gb|BE194906.2|BE194906 HVSMEh0087I12f Hordeum vulgare 5-45 ... 40 0.28
gb|BG366521.1|BG366521 HVSMEi0007F10f Hordeum vulgare 20 DA... 40 0.28
gb|BG368379.1|BG368379 HVSMEi0018C07f Hordeum vulgare 20 DA... 40 0.28
gb|BI952066.1|BI952066 HVSMEm0004I02f Hordeum vulgare green... 40 0.28
gb|BI952196.1|BI952196 HVSMEm0004P09f Hordeum vulgare green... 40 0.28
gb|BE213800.1|BE213800 HV_CEb0001F01f Hordeum vulgare seedl... 40 0.28
gb|BE519743.1|BE519743 HV_CEb0021A21f Hordeum vulgare seedl... 40 0.28
gb|BF065887.2|BF065887 HV_CEb0014E07f Hordeum vulgare seedl... 40 0.28
gb|BF065908.2|BF065908 HV_CEb0014F07f Hordeum vulgare seedl... 40 0.28
gb|BE231283.2|BE231283 HVSMEg0019I11f Hordeum vulgare pre-a... 40 0.28
gb|BF626985.3|BF626985 HVSMEb0001O07f Hordeum vulgare seedl... 40 0.28
gb|BE060200.3|BE060200 HVSMEg0011E01f Hordeum vulgare pre-a... 40 0.28
gb|AV915688.1|AV915688 AV915688 K. Sato unpublished cDNA li... 40 0.28
gb|AJ434819.1|AJ434819 AJ434819 S00002 Hordeum vulgare subs... 40 0.28
gb|BJ463722.1|BJ463722 BJ463722 K. Sato unpublished cDNA li... 40 0.28
gb|BQ459644.1|BQ459644 HA08H24r HA Hordeum vulgare subsp. v... 40 0.28
gb|BQ465639.1|BQ465639 HU04D22r HU Hordeum vulgare subsp. v... 40 0.28
gb|BQ465713.1|BQ465713 HU04H13r HU Hordeum vulgare subsp. v... 40 0.28
gb|BQ468983.1|BQ468983 HM03A05r HM Hordeum vulgare subsp. v... 40 0.28
gb|BQ470554.1|BQ470554 HX03F08r HX Hordeum vulgare subsp. v... 40 0.28
gb|BQ663909.1|BQ663909 HU04I21u HU Hordeum vulgare subsp. v... 40 0.28
gb|BM441110.2|BM441110 EBed02_SQ002_H09_R endosperm, 8 DPA,... 40 0.28
gb|BM098745.2|BM098745 EBem08_SQ003_P12_R embryo, 40 DPA, n... 40 0.28
gb|BM376213.2|BM376213 EBma01_SQ002_K23_R maternal, 4 DPA, ... 40 0.28
gb|BM373061.2|BM373061 EBma04_SQ002_P04_R maternal, 10 DPA,... 40 0.28
gb|BI780916.2|BI780916 EBma05_SQ001_H20_R maternal, 12 DPA,... 40 0.28
gb|BI777000.2|BI777000 EBpi03_SQ001_J22_R pistil, 4 DPA, no... 40 0.28
gb|BI778681.2|BI778681 EBro01_SQ001_B04_R root, 3 week, hyd... 40 0.28
gb|BI779611.2|BI779611 EBro01_SQ004_J05_R root, 3 week, hyd... 40 0.28
gb|BQ755439.1|BQ755439 EBed07_SQ002_J14_R endosperm, 28 DPA... 40 0.28
gb|BQ764684.1|BQ764684 EBca01_SQ004_H18_R carpel, pre-anthe... 40 0.28
gb|BU968169.1|BU968169 HB06K11r BC Hordeum vulgare subsp. v... 40 0.28
gb|BU974840.1|BU974840 HB29E09r BC Hordeum vulgare subsp. v... 40 0.28
gb|BU982825.1|BU982825 HA27L14r HA Hordeum vulgare subsp. v... 40 0.28
gb|CA003844.1|CA003844 HS15M03r HS Hordeum vulgare subsp. v... 40 0.28
gb|CA004707.1|CA004707 HS18H02r HS Hordeum vulgare subsp. v... 40 0.28
gb|CA006589.1|CA006589 HU05B23r HU Hordeum vulgare subsp. v... 40 0.28
gb|CA007345.1|CA007345 HU07K09r HU Hordeum vulgare subsp. v... 40 0.28
gb|CA013705.1|CA013705 HT09E03r HT Hordeum vulgare subsp. v... 40 0.28
gb|CA015599.1|CA015599 HT14M24r HT Hordeum vulgare subsp. v... 40 0.28
gb|CA019195.1|CA019195 HV11C18r HV Hordeum vulgare subsp. v... 40 0.28
gb|CA020167.1|CA020167 HV14I14r HV Hordeum vulgare subsp. v... 40 0.28
gb|CA020373.1|CA020373 HZ36B17r HZ Hordeum vulgare subsp. v... 40 0.28
gb|CA020523.1|CA020523 HZ36J03r HZ Hordeum vulgare subsp. v... 40 0.28
gb|CA022272.1|CA022272 HZ42K09r HZ Hordeum vulgare subsp. v... 40 0.28
gb|CA022383.1|CA022383 HZ42P07r HZ Hordeum vulgare subsp. v... 40 0.28
gb|CA023379.1|CA023379 HZ46A22r HZ Hordeum vulgare subsp. v... 40 0.28
gb|CA024597.1|CA024597 HZ49M05r HZ Hordeum vulgare subsp. v... 40 0.28
gb|CA025158.1|CA025158 HZ51G01r HZ Hordeum vulgare subsp. v... 40 0.28
gb|CA026265.1|CA026265 HZ55G14r HZ Hordeum vulgare subsp. v... 40 0.28
gb|CA026280.1|CA026280 HZ55H06r HZ Hordeum vulgare subsp. v... 40 0.28
gb|CA026542.1|CA026542 HZ56D10r HZ Hordeum vulgare subsp. v... 40 0.28
gb|CA026945.1|CA026945 HZ57G23r HZ Hordeum vulgare subsp. v... 40 0.28
gb|CA028264.1|CA028264 HZ61H15r HZ Hordeum vulgare subsp. v... 40 0.28
gb|CA028353.1|CA028353 HZ61L17r HZ Hordeum vulgare subsp. v... 40 0.28
gb|CA029592.1|CA029592 HZ65K12r HZ Hordeum vulgare subsp. v... 40 0.28
gb|CA032936.1|CA032936 HX14K05r HX Hordeum vulgare subsp. v... 40 0.28
gb|CB878627.1|CB878627 HP09D12T HP Hordeum vulgare subsp. v... 40 0.28
gb|CB882547.1|CB882547 HL02D01w HL Hordeum vulgare subsp. v... 40 0.28
gb|CV054874.1|CV054874 BNEL114c5 Barley EST endosperm libra... 40 0.28
gb|CV054978.1|CV054978 BNEL115d8 Barley EST endosperm libra... 40 0.28
gb|CV056311.1|CV056311 BNEL16C5 Barley EST endosperm librar... 40 0.28
gb|CV057173.1|CV057173 BNEL24g9 Barley EST endosperm librar... 40 0.28
gb|CV058547.1|CV058547 BNEL39b8 Barley EST endosperm librar... 40 0.28
gb|CV059437.1|CV059437 BNEL48b4 Barley EST endosperm librar... 40 0.28
gb|CV060238.1|CV060238 BNEL55h6 Barley EST endosperm librar... 40 0.28
gb|CV061097.1|CV061097 BNEL64h6 Barley EST endosperm librar... 40 0.28
gb|CK123892.1|CK123892 BES1824105p01 BES1824 Hordeum vulgar... 40 0.28
gb|CK124442.1|CK124442 BES1824108o22 BES1824 Hordeum vulgar... 40 0.28
>gb|BE196002.1|BE196002 HVSMEh0091B12f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0091B12f, mRNA sequence
Length = 904
Score = 91.7 bits (46), Expect = 9e-017
Identities = 150/182 (82%), Gaps = 2/182 (1%)
Strand = Plus / Minus
Query: 1413 tcgccgtagggcgcgaagcacga-gtcggtggcgccgtacatgatgatgtcggacaccag 1471
|||||||| |||||||||| ||| ||| | || |||||||||||||||||||| || ||
Sbjct: 382 tcgccgtacggcgcgaagc-cgatgtccgaggagccgtacatgatgatgtcggtgacaag 324
Query: 1472 ggagcgcgggcgggaggagaagacgtggtcgtaggtgcggagcacggcctcggcgacgcg 1531
||||| || || || | ||||||||||| | ||||| ||||| ||||| ||| ||||
Sbjct: 323 agagcgtggccgcgacgccaagacgtggtcatgcgtgcgcagcaccgcctcagcggcgcg 264
Query: 1532 cggcgacgagaccacgacggtcggcacggcgccgaggcggagcagcatcaggtccgggcc 1591
|||||| || || |||| |||||||||||||| |||||||| ||||||| ||| |||||
Sbjct: 263 cggcgatgacacgacgagtgtcggcacggcgcccaggcggaggagcatcacgtcggggcc 204
Query: 1592 gt 1593
||
Sbjct: 203 gt 202
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1641 aggtgcaggtgcccgatgatggg 1663
|||||||||||||||||||||||
Sbjct: 154 aggtgcaggtgcccgatgatggg 132
>gb|BJ464550.1|BJ464550 BJ464550 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags34o15 5', mRNA sequence
Length = 380
Score = 75.8 bits (38), Expect = 5e-012
Identities = 65/74 (87%)
Strand = Plus / Minus
Query: 662 gtgcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgacggcctt 721
|||||||||||||||||||||||| | ||| || |||||||||||||| | |||||||||
Sbjct: 378 gtgcgggaggaggagcggcaccggtgtgtgtagccggagcgtctccttcacgacggcctt 319
Query: 722 gaggtcggtcatgc 735
|||| || |||||
Sbjct: 318 caggtaggccatgc 305
>gb|BF065379.1|BF065379 HV_CEb0012E10f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0012E10f, mRNA sequence
Length = 620
Score = 73.8 bits (37), Expect = 2e-011
Identities = 85/101 (84%)
Strand = Plus / Minus
Query: 1493 gacgtggtcgtaggtgcggagcacggcctcggcgacgcgcggcgacgagaccacgacggt 1552
||||||||| | ||||| ||||| ||||| ||| |||| ||||| || || |||| |||
Sbjct: 393 gacgtggtcatgcgtgcgcagcaccgcctcagcggcgcgtggcgatgacacgacgagggt 334
Query: 1553 cggcacggcgccgaggcggagcagcatcaggtccgggccgt 1593
|||||||||||| |||||||| ||||||| ||| |||||||
Sbjct: 333 cggcacggcgcccaggcggaggagcatcaagtcggggccgt 293
>gb|CA009631.1|CA009631 HU14K18r HU Hordeum vulgare subsp. vulgare cDNA clone HU14K18
5-PRIME, mRNA sequence
Length = 630
Score = 73.8 bits (37), Expect = 2e-011
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 662 gtgcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgacggcctt 721
|||||||| |||||||||| |||||||||| || |||||||||||||| | ||||||||
Sbjct: 123 gtgcgggacgaggagcggcgccggcgggtgaagccggagcgtctcctttaccacggcctt 64
Query: 722 gaggt 726
|||||
Sbjct: 63 gaggt 59
>gb|CA018489.1|CA018489 HV08M10r HV Hordeum vulgare subsp. vulgare cDNA clone HV08M10
5-PRIME, mRNA sequence
Length = 550
Score = 67.9 bits (34), Expect = 1e-009
Identities = 76/90 (84%)
Strand = Plus / Minus
Query: 1490 gaagacgtggtcgtaggtgcggagcacggcctcggcgacgcgcggcgacgagaccacgac 1549
|||||||||||||| ||||| |||||||||| ||| ||| ||||||||| || ||||
Sbjct: 393 gaagacgtggtcgtgcgtgcgcagcacggcctgcgcggcgctcggcgacgacacgacgag 334
Query: 1550 ggtcggcacggcgccgaggcggagcagcat 1579
||||| ||||||||||| ||||| |||||
Sbjct: 333 cgtcgggacggcgccgagtcggaggagcat 304
>gb|AV925268.1|AV925268 AV925268 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd22h15 5', mRNA sequence
Length = 614
Score = 61.9 bits (31), Expect = 8e-008
Identities = 118/147 (80%)
Strand = Plus / Minus
Query: 1445 gccgtacatgatgatgtcggacaccagggagcgcgggcgggaggagaagacgtggtcgta 1504
||||||||||||| ||||||| || | |||| | || || || | ||||||||||||||
Sbjct: 402 gccgtacatgatggtgtcggagacgacggagtggggccgtgaagcgaagacgtggtcgtg 343
Query: 1505 ggtgcggagcacggcctcggcgacgcgcggcgacgagaccacgacggtcggcacggcgcc 1564
||||| ||||||||||| ||| || ||| || || || |||| | | |||||||||||
Sbjct: 342 agtgcgcagcacggcctctgcggcgtgcgaggaggacacaacgaggttgggcacggcgcc 283
Query: 1565 gaggcggagcagcatcaggtccgggcc 1591
|| ||||| ||||||| ||| |||||
Sbjct: 282 cagacggaggagcatcacgtcggggcc 256
>gb|AV932347.1|AV932347 AV932347 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal3e02 5', mRNA sequence
Length = 606
Score = 61.9 bits (31), Expect = 8e-008
Identities = 118/147 (80%)
Strand = Plus / Minus
Query: 1445 gccgtacatgatgatgtcggacaccagggagcgcgggcgggaggagaagacgtggtcgta 1504
||||||||||||| ||||||| || | |||| | || || || | ||||||||||||||
Sbjct: 234 gccgtacatgatggtgtcggagacgacggagtggggccgtgaagcgaagacgtggtcgtg 175
Query: 1505 ggtgcggagcacggcctcggcgacgcgcggcgacgagaccacgacggtcggcacggcgcc 1564
||||| ||||||||||| ||| || ||| || || || |||| | | |||||||||||
Sbjct: 174 agtgcgcagcacggcctctgcggcgtgcgaggaggacacaacgaggttgggcacggcgcc 115
Query: 1565 gaggcggagcagcatcaggtccgggcc 1591
|| ||||| ||||||| ||| |||||
Sbjct: 114 cagacggaggagcatcacgtcggggcc 88
>gb|AV934261.1|AV934261 AV934261 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11k15 5', mRNA sequence
Length = 598
Score = 61.9 bits (31), Expect = 8e-008
Identities = 118/147 (80%)
Strand = Plus / Minus
Query: 1445 gccgtacatgatgatgtcggacaccagggagcgcgggcgggaggagaagacgtggtcgta 1504
||||||||||||| ||||||| || | |||| | || || || | ||||||||||||||
Sbjct: 234 gccgtacatgatggtgtcggagacgacggagtggggccgtgaagcgaagacgtggtcgtg 175
Query: 1505 ggtgcggagcacggcctcggcgacgcgcggcgacgagaccacgacggtcggcacggcgcc 1564
||||| ||||||||||| ||| || ||| || || || |||| | | |||||||||||
Sbjct: 174 agtgcgcagcacggcctctgcggcgtgcgaggaggacacaacgaggttgggcacggcgcc 115
Query: 1565 gaggcggagcagcatcaggtccgggcc 1591
|| ||||| ||||||| ||| |||||
Sbjct: 114 cagacggaggagcatcacgtcggggcc 88
>gb|BG300331.1|BG300331 HVSMEb0012I19f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0012I19f, mRNA sequence
Length = 515
Score = 58.0 bits (29), Expect = 1e-006
Identities = 74/89 (83%)
Strand = Plus / Minus
Query: 1491 aagacgtggtcgtaggtgcggagcacggcctcggcgacgcgcggcgacgagaccacgacg 1550
||||||||||||| ||||| |||||||| | ||| ||| ||| ||||| || ||||
Sbjct: 377 aagacgtggtcgtgcgtgcgcagcacggcatgcgcggcgctcggtgacgacactacgagc 318
Query: 1551 gtcggcacggcgccgaggcggagcagcat 1579
||||| ||||||||||||||||| |||||
Sbjct: 317 gtcgggacggcgccgaggcggaggagcat 289
>gb|BE215637.1|BE215637 HV_CEb0007H18f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0007H18f, mRNA sequence
Length = 531
Score = 58.0 bits (29), Expect = 1e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 675 agcggcaccggcgggtgcaggcggagcgtctccttgatgac 715
|||||||||| || |||||| ||||||||||||||||||||
Sbjct: 274 agcggcaccgacgtgtgcagccggagcgtctccttgatgac 234
>gb|BF259330.2|BF259330 HVSMEf0019E22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019E22f, mRNA sequence
Length = 527
Score = 56.0 bits (28), Expect = 5e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 680 caccggcgggtgcaggcggagcgtctccttgatgac 715
||||||||||||||| | ||||||||||||||||||
Sbjct: 467 caccggcgggtgcagcctgagcgtctccttgatgac 432
>gb|BI952693.1|BI952693 HVSMEm0007G18f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0007G18f, mRNA sequence
Length = 426
Score = 56.0 bits (28), Expect = 5e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 684 ggcgggtgcaggcggagcgtctccttgatgac 715
||||||||||| ||||||||||||||||||||
Sbjct: 305 ggcgggtgcagccggagcgtctccttgatgac 274
>gb|BJ471507.1|BJ471507 BJ471507 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal18p14 5', mRNA sequence
Length = 341
Score = 56.0 bits (28), Expect = 5e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 684 ggcgggtgcaggcggagcgtctccttgatgac 715
||||||||||| ||||||||||||||||||||
Sbjct: 206 ggcgggtgcagccggagcgtctccttgatgac 175
>gb|AV923900.1|AV923900 AV923900 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd20a20 5', mRNA sequence
Length = 357
Score = 52.0 bits (26), Expect = 7e-005
Identities = 83/102 (81%)
Strand = Plus / Minus
Query: 1490 gaagacgtggtcgtaggtgcggagcacggcctcggcgacgcgcggcgacgagaccacgac 1549
|||||||||||||| ||||| ||||||||||| ||| || ||| || || || ||||
Sbjct: 325 gaagacgtggtcgtgagtgcgcagcacggcctctgcggcgtgcgaggaggacacaacgag 266
Query: 1550 ggtcggcacggcgccgaggcggagcagcatcaggtccgggcc 1591
| | ||||||||||| || ||||| ||||||| ||| |||||
Sbjct: 265 gttgggcacggcgcccagacggaggagcatcacgtcggggcc 224
>gb|BJ547848.1|BJ547848 BJ547848 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal40l11 5', mRNA sequence
Length = 317
Score = 52.0 bits (26), Expect = 7e-005
Identities = 83/102 (81%)
Strand = Plus / Minus
Query: 1490 gaagacgtggtcgtaggtgcggagcacggcctcggcgacgcgcggcgacgagaccacgac 1549
|||||||||||||| ||||| ||||||||||| ||| || ||| || || || ||||
Sbjct: 161 gaagacgtggtcgtgagtgcgcagcacggcctctgcggcgtgcgaggaggacacaacgag 102
Query: 1550 ggtcggcacggcgccgaggcggagcagcatcaggtccgggcc 1591
| | ||||||||||| || ||||| ||||||| ||| |||||
Sbjct: 101 gttgggcacggcgcccagacggaggagcatcacgtcggggcc 60
>gb|BF628280.2|BF628280 HVSMEb0003J20f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0003J20f, mRNA sequence
Length = 490
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1774 ggagcaggagcggcaggagcagcag 1798
|||||||||||||||||||||||||
Sbjct: 133 ggagcaggagcggcaggagcagcag 109
>gb|BG300903.1|BG300903 HVSMEb0018O05f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0018O05f, mRNA sequence
Length = 613
Score = 50.1 bits (25), Expect = 3e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1774 ggagcaggagcggcaggagcagcag 1798
|||||||||||||||||||||||||
Sbjct: 88 ggagcaggagcggcaggagcagcag 64
>gb|BG344914.2|BG344914 HVSMEg0016N10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0016N10f, mRNA sequence
Length = 633
Score = 50.1 bits (25), Expect = 3e-004
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 1545 acgacggtcggcacggcgccgaggcggagcagcatcaggtccgggccgt 1593
|||| |||||||||||| || |||||||| ||||||| ||| |||||||
Sbjct: 272 acgagggtcggcacggcacccaggcggaggagcatcaagtcggggccgt 224
>gb|BF261803.3|BF261803 HV_CEa0002E08f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0002E08f, mRNA sequence
Length = 850
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 1160 gtcggtgagctcccggaacagcctgttgcggccttcctccatggagaacttgccggagac 1219
|||| ||| ||||| ||||||| ||| |||||||||||| | ||||||| ||||| ||
Sbjct: 402 gtcgatgacctccctgaacagctcgttccggccttcctcccggaagaacttcccggacac 343
Query: 1220 ggcgcggca 1228
|||||||||
Sbjct: 342 ggcgcggca 334
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 1354 gcaccttgctggcgttgagcaggtgcacggtgaccagcttccgcgcct 1401
||||||| |||||| ||||||||||| |||||||||| ||| |||||
Sbjct: 208 gcaccttcctggcgctgagcaggtgcgtggtgaccagcctcctcgcct 161
Score = 40.1 bits (20), Expect = 0.28
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 1485 gaggagaagacgtggtcgtaggtgcggagcacggcctcggcgacgcgcggcgacgagacc 1544
|||| |||||||||||| | ||||| || || ||||||||| ||||||| || |||||
Sbjct: 77 gaggcgaagacgtggtcctgcgtgcgcaggaccgcctcggcggcgcgcggggaggagacg 18
Query: 1545 acga 1548
||||
Sbjct: 17 acga 14
>gb|BQ461073.1|BQ461073 HE01E18r HE Hordeum vulgare subsp. vulgare cDNA clone HE01E18
5-PRIME, mRNA sequence
Length = 509
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 1160 gtcggtgagctcccggaacagcctgttgcggccttcctccatggagaacttgccggagac 1219
|||| ||| ||||| ||||||| ||| |||||||||||| | ||||||| ||||| ||
Sbjct: 233 gtcgatgacctccctgaacagctcgttccggccttcctcccggaagaacttcccggacac 174
Query: 1220 ggcgcggca 1228
|||||||||
Sbjct: 173 ggcgcggca 165
>gb|CA009374.1|CA009374 HU13P05r HU Hordeum vulgare subsp. vulgare cDNA clone HU13P05
5-PRIME, mRNA sequence
Length = 537
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 671 gaggagcggcaccggcgggtgcaggcggagcgtctccttga 711
||||||||| |||||||||||| ||| |||||||||||||
Sbjct: 75 gaggagcgggcccggcgggtgcatgcgcagcgtctccttga 35
>gb|BF620376.2|BF620376 HVSMEc0019K12f Hordeum vulgare seedling shoot EST library HVcDNA0003
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEc0019K12f, mRNA sequence
Length = 681
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1742 cgccgacgccgacgccgacgctg 1764
|||||||||||||||||||||||
Sbjct: 416 cgccgacgccgacgccgacgctg 438
>gb|BF254550.2|BF254550 HVSMEf0004F12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0004F12f, mRNA sequence
Length = 799
Score = 46.1 bits (23), Expect = 0.005
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 662 gtgcgggaggaggagcggcaccggcgggtgcaggcggagcgtctccttgatgacggcct 720
||||||||| | |||||| |||||||||||| ||||||| |||||| | ||||||||
Sbjct: 179 gtgcgggagcatcagcggcgtcggcgggtgcagccggagcgactccttcacgacggcct 121
>gb|AV915997.1|AV915997 AV915997 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1a14 5', mRNA sequence
Length = 606
Score = 46.1 bits (23), Expect = 0.005
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 696 cggagcgtctccttgatgacggccttgaggt 726
||||| |||||||||||||||||||| ||||
Sbjct: 301 cggagtgtctccttgatgacggcctttaggt 271
>gb|AV921112.1|AV921112 AV921112 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1a14 3', mRNA sequence
Length = 746
Score = 46.1 bits (23), Expect = 0.005
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 696 cggagcgtctccttgatgacggccttgaggt 726
||||| |||||||||||||||||||| ||||
Sbjct: 556 cggagtgtctccttgatgacggcctttaggt 586
>gb|AV927306.1|AV927306 AV927306 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1h15 3', mRNA sequence
Length = 586
Score = 46.1 bits (23), Expect = 0.005
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 696 cggagcgtctccttgatgacggccttgaggt 726
||||| |||||||||||||||||||| ||||
Sbjct: 556 cggagtgtctccttgatgacggcctttaggt 586
>gb|BJ463196.1|BJ463196 BJ463196 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags26d07 5', mRNA sequence
Length = 578
Score = 46.1 bits (23), Expect = 0.005
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 696 cggagcgtctccttgatgacggccttgaggt 726
||||| |||||||||||||||||||| ||||
Sbjct: 435 cggagtgtctccttgatgacggcctttaggt 405
>gb|BJ465003.1|BJ465003 BJ465003 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36o23 5', mRNA sequence
Length = 664
Score = 46.1 bits (23), Expect = 0.005
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 696 cggagcgtctccttgatgacggccttgaggt 726
||||| |||||||||||||||||||| ||||
Sbjct: 70 cggagtgtctccttgatgacggcctttaggt 40
>gb|CA030582.1|CA030582 HX07H18r HX Hordeum vulgare subsp. vulgare cDNA clone HX07H18
5-PRIME, mRNA sequence
Length = 616
Score = 46.1 bits (23), Expect = 0.005
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 684 ggcgggtgcaggcggagcgtctccttgatgacggc 718
|||||||||| || ||||||||||||||||||||
Sbjct: 351 ggcgggtgcacccgcagcgtctccttgatgacggc 317
>gb|AV836496.1|AV836496 AV836496 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd22b21, mRNA
sequence
Length = 521
Score = 44.1 bits (22), Expect = 0.018
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 674 gagcggcaccggcgggtgcaggcggagcgtctccttga 711
|||||||| || ||| ||||| ||||||||||||||||
Sbjct: 481 gagcggcagcgccggatgcagccggagcgtctccttga 444
>gb|BF253422.2|BF253422 HVSMEf0001G02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001G02f, mRNA sequence
Length = 617
Score = 44.1 bits (22), Expect = 0.018
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 674 gagcggcaccggcgggtgcaggcggagcgtctccttgatgacggcc 719
||||||| |||||||||||| ||||| | |||||||| |||||||
Sbjct: 414 gagcggcgtcggcgggtgcagacggagggactccttgacgacggcc 369
>gb|BG343494.1|BG343494 HVSMEg0005O16f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005O16f, mRNA sequence
Length = 989
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 793 cttcctgcagcttcttcatcag 814
||||||||||||||||||||||
Sbjct: 234 cttcctgcagcttcttcatcag 213
>gb|BI956493.1|BI956493 HVSMEn0003M04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0003M04f, mRNA sequence
Length = 942
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 686 cgggtgcaggcggagcgtctccttgatgac 715
||||||||| |||| |||||||||||||||
Sbjct: 286 cgggtgcagccggaacgtctccttgatgac 257
>gb|BI958239.1|BI958239 HVSMEn0014A11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014A11f, mRNA sequence
Length = 674
Score = 44.1 bits (22), Expect = 0.018
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 686 cgggtgcaggcggagcgtctccttgatgac 715
||||||||| |||| |||||||||||||||
Sbjct: 345 cgggtgcagccggaacgtctccttgatgac 316
>gb|BI960513.1|BI960513 HVSMEn0024N22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024N22f, mRNA sequence
Length = 653
Score = 44.1 bits (22), Expect = 0.018
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 674 gagcggcaccggcgggtgcaggcggagcgtctccttgatgacggcc 719
||||||| |||||||||||| ||||| | |||||||| |||||||
Sbjct: 151 gagcggcgtcggcgggtgcagacggagggactccttgacgacggcc 106
>gb|AV914110.1|AV914110 AV914110 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4m04 5', mRNA sequence
Length = 720
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 793 cttcctgcagcttcttcatcag 814
||||||||||||||||||||||
Sbjct: 39 cttcctgcagcttcttcatcag 18
>gb|AV918446.1|AV918446 AV918446 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21b10 3', mRNA sequence
Length = 604
Score = 44.1 bits (22), Expect = 0.018
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 696 cggagcgtctccttgatgacggcctt 721
||||| ||||||||||||||||||||
Sbjct: 575 cggagtgtctccttgatgacggcctt 600
>gb|BI776301.2|BI776301 EBem04_SQ001_H10_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ001_H10 5', mRNA sequence
Length = 537
Score = 44.1 bits (22), Expect = 0.018
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 674 gagcggcaccggcgggtgcaggcggagcgtctccttgatgacggcc 719
||||||| |||||||||||| ||||| | |||||||| |||||||
Sbjct: 357 gagcggcgtcggcgggtgcagacggagggactccttgacgacggcc 312
>gb|BI780959.2|BI780959 EBma05_SQ001_L03_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ001_L03 5', mRNA sequence
Length = 568
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1742 cgccgacgccgacgccgacgct 1763
||||||||||||||||||||||
Sbjct: 26 cgccgacgccgacgccgacgct 47
>gb|BM371283.2|BM371283 EBma08_SQ002_C05_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ002_C05 5', mRNA sequence
Length = 648
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1742 cgccgacgccgacgccgacgct 1763
||||||||||||||||||||||
Sbjct: 27 cgccgacgccgacgccgacgct 48
>gb|BQ755905.1|BQ755905 EBed07_SQ003_M24_R endosperm, 28 DPA, no treatment, cv Optic, EBed07
Hordeum vulgare subsp. vulgare cDNA clone
EBed07_SQ003_M24 5', mRNA sequence
Length = 542
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1742 cgccgacgccgacgccgacgct 1763
||||||||||||||||||||||
Sbjct: 18 cgccgacgccgacgccgacgct 39
>gb|BQ760761.1|BQ760761 EBro03_SQ003_G10_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_G10 5', mRNA sequence
Length = 571
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1742 cgccgacgccgacgccgacgct 1763
||||||||||||||||||||||
Sbjct: 34 cgccgacgccgacgccgacgct 55
>gb|BQ768037.1|BQ768037 EBro08_SQ010_D14_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ010_D14 5', mRNA sequence
Length = 381
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1741 tcgccgacgccgacgccgacgc 1762
||||||||||||||||||||||
Sbjct: 336 tcgccgacgccgacgccgacgc 315
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1741 tcgccgacgccgacgccgacgc 1762
||||||||||||||||||||||
Sbjct: 237 tcgccgacgccgacgccgacgc 216
>gb|BU988343.1|BU988343 HF17F20r HF Hordeum vulgare subsp. vulgare cDNA clone HF17F20
5-PRIME, mRNA sequence
Length = 545
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 793 cttcctgcagcttcttcatcag 814
||||||||||||||||||||||
Sbjct: 381 cttcctgcagcttcttcatcag 360
>gb|CA013595.1|CA013595 HT08P07r HT Hordeum vulgare subsp. vulgare cDNA clone HT08P07
5-PRIME, mRNA sequence
Length = 623
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 793 cttcctgcagcttcttcatcag 814
||||||||||||||||||||||
Sbjct: 622 cttcctgcagcttcttcatcag 601
>gb|CA013664.1|CA013664 HT09C08r HT Hordeum vulgare subsp. vulgare cDNA clone HT09C08
5-PRIME, mRNA sequence
Length = 651
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 793 cttcctgcagcttcttcatcag 814
||||||||||||||||||||||
Sbjct: 625 cttcctgcagcttcttcatcag 604
>gb|AU252324.1|AU252324 AU252324 salt-stressed barley root cDNA Hordeum vulgare subsp.
vulgare cDNA clone BR-C16 similar to cytochrome P450
CYP71C4, mRNA sequence
Length = 576
Score = 44.1 bits (22), Expect = 0.018
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 897 aagatagccttgatatggtctctggtgaggccat 930
||||| ||||||||||| |||||||||| |||||
Sbjct: 143 aagatggccttgatatgatctctggtgatgccat 110
>gb|BE427757.1|BE427757 PSR6709 ITEC PSR Barley Inflorescence Library Hordeum vulgare subsp.
vulgare cDNA clone PSR6709, mRNA sequence
Length = 1083
Score = 42.1 bits (21), Expect = 0.071
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1742 cgccgacgccgacgccgacgc 1762
|||||||||||||||||||||
Sbjct: 276 cgccgacgccgacgccgacgc 296
>gb|BE427829.1|BE427829 PSR6823 ITEC PSR Barley Inflorescence Library Hordeum vulgare subsp.
vulgare cDNA clone PSR6823, mRNA sequence
Length = 1046
Score = 42.1 bits (21), Expect = 0.071
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1742 cgccgacgccgacgccgacgc 1762
|||||||||||||||||||||
Sbjct: 287 cgccgacgccgacgccgacgc 307
>gb|BE427856.1|BE427856 PSR6858 ITEC PSR Barley Inflorescence Library Hordeum vulgare subsp.
vulgare cDNA clone PSR6858, mRNA sequence
Length = 1234
Score = 42.1 bits (21), Expect = 0.071
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1742 cgccgacgccgacgccgacgc 1762
|||||||||||||||||||||
Sbjct: 289 cgccgacgccgacgccgacgc 309
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 364,603
Number of Sequences: 312970
Number of extensions: 364603
Number of successful extensions: 117609
Number of sequences better than 0.5: 164
Number of HSP's better than 0.5 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117075
Number of HSP's gapped (non-prelim): 448
length of query: 2042
length of database: 175,134,539
effective HSP length: 20
effective length of query: 2022
effective length of database: 168,875,139
effective search space: 341465531058
effective search space used: 341465531058
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)