BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5352090.2.1
(915 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE558795.1|BE558795 HV_CEb0020G12f Hordeum vulgare seedl... 337 4e-091
gb|CA025237.1|CA025237 HZ51O06r HZ Hordeum vulgare subsp. v... 337 4e-091
gb|CA030194.1|CA030194 HX06F18r HX Hordeum vulgare subsp. v... 337 4e-091
gb|CA008548.1|CA008548 HU11E24r HU Hordeum vulgare subsp. v... 329 9e-089
gb|BQ758546.1|BQ758546 EBma07_SQ002_G03_R maternal, 21 DPA,... 317 4e-085
gb|BQ758625.1|BQ758625 EBma07_SQ002_G09_R maternal, 21 DPA,... 317 4e-085
gb|BQ758717.1|BQ758717 EBma07_SQ002_I14_R maternal, 21 DPA,... 317 4e-085
gb|BQ760943.1|BQ760943 EBro03_SQ003_O16_R root, 3 week, wat... 317 4e-085
gb|BI779229.2|BI779229 EBro01_SQ003_G07_R root, 3 week, hyd... 272 2e-071
gb|BF626517.2|BF626517 HVSMEa0018J24f Hordeum vulgare seedl... 137 7e-031
gb|BE060066.3|BE060066 HVSMEg0011F06f Hordeum vulgare pre-a... 56 2e-006
gb|CA032790.1|CA032790 HX14D10r HX Hordeum vulgare subsp. v... 46 0.002
gb|BM377243.2|BM377243 EBem05_SQ004_I18_R embryo, 14 DPA, n... 40 0.13
gb|AV928803.1|AV928803 AV928803 K. Sato unpublished cDNA li... 38 0.49
gb|CA005257.1|CA005257 HU11E24u HU Hordeum vulgare subsp. v... 38 0.49
gb|CA005509.1|CA005509 HU10C10u HU Hordeum vulgare subsp. v... 38 0.49
gb|CA022958.1|CA022958 HZ44N10r HZ Hordeum vulgare subsp. v... 38 0.49
gb|CB874801.1|CB874801 HX06F18w HX Hordeum vulgare subsp. v... 38 0.49
>gb|BE558795.1|BE558795 HV_CEb0020G12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020G12f, mRNA sequence
Length = 823
Score = 337 bits (170), Expect = 4e-091
Identities = 394/466 (84%), Gaps = 7/466 (1%)
Strand = Plus / Plus
Query: 212 ggaggaagagatgttcccgcctggcctgatccaccaccgccctgacgcccccgttcccgg 271
|||||| ||||||||||| ||||||||||||||||||||| | |||| ||| | |||||
Sbjct: 97 ggaggaggagatgttcccccctggcctgatccaccaccgcgcggacggcccggggcccgg 156
Query: 272 cgatggggcgacacgctccggccccggcgggccgagccttgtactgacggcggaccccaa 331
||| | | || ||||||||| |||| || ||||| || || ||||| ||||||||
Sbjct: 157 cgaggtgccg---cgctccggc---ggcgctcccagcctcgtgctcacggctgaccccaa 210
Query: 332 gcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagct 391
|||| | || || ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 211 gccccgcctccgctggacggccgacctccacgagcgcttcgtcgacgccgtcgcccagct 270
Query: 392 cggcggacccgagaaagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtct 450
|||||| |||||||||||||||||||||| |||||||||||||||||| || ||||| ||
Sbjct: 271 cggcgggcccgagaaagcaacaccaaaaactatcttaaggacaatgggtgtaaagggact 330
Query: 451 tactctttttcacttgaagagccatcttcagaaatacagattagggaaacaatctggtaa 510
|| ||||| ||||||||||| |||||||||||||||||| | ||||||||| |||| ||
Sbjct: 331 cacacttttccacttgaagagtcatcttcagaaatacagaatggggaaacaaactggcaa 390
Query: 511 ggagggatcagagcaatctaaagatgcatcctatcttctagatgctcaaagtggaatgag 570
||| | |||||||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 391 agagacgccggagcaatctaaagatgggtcctatcttcttgatgctcaaggtggaatgag 450
Query: 571 cgtgtcccctagagttcctgcccaggatatgaaagaaagccaagaagttaaagaagcact 630
| |||| || ||||| || | || ||| |||||||| ||||||||||||||||| ||
Sbjct: 451 cctgtctccccgagtttctactcaagatgcaaaagaaagtcaagaagttaaagaagccct 510
Query: 631 gagagcgcagatggaagtccaaagaagactgcatgaacaagtggag 676
|||||| |||||||| | ||| |||| ||||||||||||||||||
Sbjct: 511 gagagcacagatggagatgcaacgaagcctgcatgaacaagtggag 556
Score = 38.2 bits (19), Expect = 0.49
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 128 ggatccttcgcttttgggg 146
|||||||||||||||||||
Sbjct: 23 ggatccttcgcttttgggg 41
>gb|CA025237.1|CA025237 HZ51O06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51O06
5-PRIME, mRNA sequence
Length = 578
Score = 337 bits (170), Expect = 4e-091
Identities = 394/466 (84%), Gaps = 7/466 (1%)
Strand = Plus / Plus
Query: 212 ggaggaagagatgttcccgcctggcctgatccaccaccgccctgacgcccccgttcccgg 271
|||||| ||||||||||| ||||||||||||||||||||| | |||| ||| | |||||
Sbjct: 49 ggaggaggagatgttcccccctggcctgatccaccaccgcgcggacggcccggggcccgg 108
Query: 272 cgatggggcgacacgctccggccccggcgggccgagccttgtactgacggcggaccccaa 331
||| | | || ||||||||| |||| || ||||| || || ||||| ||||||||
Sbjct: 109 cgaggtgccg---cgctccggc---ggcgcccccagcctcgtgctcacggctgaccccaa 162
Query: 332 gcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagct 391
|||| | || || ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 163 gccccgcctccgctggacggccgacctccacgagcgcttcgtcgacgccgtcgcccagct 222
Query: 392 cggcggacccgagaaagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtct 450
|||||| |||||||||||||||||||||| |||||||||||||||||| || ||||| ||
Sbjct: 223 cggcgggcccgagaaagcaacaccaaaaactatcttaaggacaatgggtgtaaagggact 282
Query: 451 tactctttttcacttgaagagccatcttcagaaatacagattagggaaacaatctggtaa 510
|| ||||| ||||||||||| |||||||||||||||||| | ||||||||| |||| ||
Sbjct: 283 cacacttttccacttgaagagtcatcttcagaaatacagaatggggaaacaaactggcaa 342
Query: 511 ggagggatcagagcaatctaaagatgcatcctatcttctagatgctcaaagtggaatgag 570
||| | |||||||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 343 agagacgccggagcaatctaaagatgggtcctatcttcttgatgctcaaggtggaatgag 402
Query: 571 cgtgtcccctagagttcctgcccaggatatgaaagaaagccaagaagttaaagaagcact 630
| |||| || ||||| || | || ||| |||||||| ||||||||||||||||| ||
Sbjct: 403 cctgtctccccgagtttctactcaagatgcaaaagaaagtcaagaagttaaagaagccct 462
Query: 631 gagagcgcagatggaagtccaaagaagactgcatgaacaagtggag 676
|||||| |||||||| | ||| |||| ||||||||||||||||||
Sbjct: 463 gagagcacagatggagatgcaacgaagcctgcatgaacaagtggag 508
>gb|CA030194.1|CA030194 HX06F18r HX Hordeum vulgare subsp. vulgare cDNA clone HX06F18
5-PRIME, mRNA sequence
Length = 639
Score = 337 bits (170), Expect = 4e-091
Identities = 394/466 (84%), Gaps = 7/466 (1%)
Strand = Plus / Plus
Query: 212 ggaggaagagatgttcccgcctggcctgatccaccaccgccctgacgcccccgttcccgg 271
|||||| ||||||||||| ||||||||||||||||||||| | |||| ||| | |||||
Sbjct: 66 ggaggaggagatgttcccccctggcctgatccaccaccgcgcggacggcccggggcccgg 125
Query: 272 cgatggggcgacacgctccggccccggcgggccgagccttgtactgacggcggaccccaa 331
||| | | || ||||||||| |||| || ||||| || || ||||| ||||||||
Sbjct: 126 cgaggtgccg---cgctccggc---ggcgcccccagcctcgtgctcacggctgaccccaa 179
Query: 332 gcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagct 391
|||| | || || ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 180 gccccgcctccgctggacggccgacctccacgagcgcttcgtcgacgccgtcgcccagct 239
Query: 392 cggcggacccgagaaagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtct 450
|||||| |||||||||||||||||||||| |||||||||||||||||| || ||||| ||
Sbjct: 240 cggcgggcccgagaaagcaacaccaaaaactatcttaaggacaatgggtgtaaagggact 299
Query: 451 tactctttttcacttgaagagccatcttcagaaatacagattagggaaacaatctggtaa 510
|| ||||| ||||||||||| |||||||||||||||||| | ||||||||| |||| ||
Sbjct: 300 cacacttttccacttgaagagtcatcttcagaaatacagaatggggaaacaaactggcaa 359
Query: 511 ggagggatcagagcaatctaaagatgcatcctatcttctagatgctcaaagtggaatgag 570
||| | |||||||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 360 agagacgccggagcaatctaaagatgggtcctatcttcttgatgctcaaggtggaatgag 419
Query: 571 cgtgtcccctagagttcctgcccaggatatgaaagaaagccaagaagttaaagaagcact 630
| |||| || ||||| || | || ||| |||||||| ||||||||||||||||| ||
Sbjct: 420 cctgtctccccgagtttctactcaagatgcaaaagaaagtcaagaagttaaagaagccct 479
Query: 631 gagagcgcagatggaagtccaaagaagactgcatgaacaagtggag 676
|||||| |||||||| | ||| |||| ||||||||||||||||||
Sbjct: 480 gagagcacagatggagatgcaacgaagcctgcatgaacaagtggag 525
>gb|CA008548.1|CA008548 HU11E24r HU Hordeum vulgare subsp. vulgare cDNA clone HU11E24
5-PRIME, mRNA sequence
Length = 601
Score = 329 bits (166), Expect = 9e-089
Identities = 394/466 (84%), Gaps = 8/466 (1%)
Strand = Plus / Plus
Query: 212 ggaggaagagatgttcccgcctggcctgatccaccaccgccctgacgcccccgttcccgg 271
|||||| ||||||||||| ||||||||||||||||||||| | |||| ||| | |||||
Sbjct: 75 ggaggaggagatgttcccccctggcctgatccaccaccgcgcggacggcccggggcccgg 134
Query: 272 cgatggggcgacacgctccggccccggcgggccgagccttgtactgacggcggaccccaa 331
||| | | || ||||||||| |||| || ||||| || || ||||| ||||||||
Sbjct: 135 cgaggtgccg---cgctccggc---ggcgcccccagcctcgtgctcacggctgaccccaa 188
Query: 332 gcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagct 391
|||| | || || ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 189 gccccgcctccgctggacggccgacctccacgagcgcttcgtcgacgccgtcgcccagct 248
Query: 392 cggcggacccgagaaagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtct 450
|||||| |||||||||||||||||||||| |||||||||||||||||| || ||||| ||
Sbjct: 249 cggcgggcccgagaaagcaacaccaaaaactatcttaaggacaatgggtgtaaagggact 308
Query: 451 tactctttttcacttgaagagccatcttcagaaatacagattagggaaacaatctggtaa 510
|| ||||| ||||||||||| |||||||||||||||||| | ||||||||| |||| ||
Sbjct: 309 cacacttttccacttgaagagtcatcttcagaaatacagaatggggaaacaaactggcaa 368
Query: 511 ggagggatcagagcaatctaaagatgcatcctatcttctagatgctcaaagtggaatgag 570
||| | |||||||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 369 agagacgccggagcaatctaaagatgggtcctatcttcttgatgctcaaggtggaatgag 428
Query: 571 cgtgtcccctagagttcctgcccaggatatgaaagaaagccaagaagttaaagaagcact 630
| |||| || ||||| || | || ||| |||||||| ||||||||||||||||| ||
Sbjct: 429 cctgtctccccgagtt-ctactcaagatgcaaaagaaagtcaagaagttaaagaagccct 487
Query: 631 gagagcgcagatggaagtccaaagaagactgcatgaacaagtggag 676
|||||| |||||||| | ||| |||| ||||||||||||||||||
Sbjct: 488 gagagcacagatggagatgcaacgaagcctgcatgaacaagtggag 533
>gb|BQ758546.1|BQ758546 EBma07_SQ002_G03_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ002_G03 5', mRNA sequence
Length = 678
Score = 317 bits (160), Expect = 4e-085
Identities = 311/360 (86%), Gaps = 1/360 (0%)
Strand = Plus / Plus
Query: 318 acggcggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgac 377
||||| |||||||||||| | || || ||||||||||||||||||||||| |||||||||
Sbjct: 70 acggctgaccccaagccccgcctccgctggacggccgacctccacgagcgcttcgtcgac 129
Query: 378 gccgtggcccagctcggcggacccgagaaagcaacaccaaaaa-tatcttaaggacaatg 436
||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 130 gccgtcgcccagctcggcgggcccgagaaagcaacaccaaaaactatcttaaggacaatg 189
Query: 437 ggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaatacagattaggg 496
|| || ||||| || || ||||| ||||||||||| |||||||||||||||||| | |||
Sbjct: 190 ggtgtaaagggactcacacttttccacttgaagagtcatcttcagaaatacagaatgggg 249
Query: 497 aaacaatctggtaaggagggatcagagcaatctaaagatgcatcctatcttctagatgct 556
|||||| |||| || ||| | |||||||||||||||| ||||||||||| ||||||
Sbjct: 250 aaacaaactggcaaagagacgccggagcaatctaaagatgggtcctatcttcttgatgct 309
Query: 557 caaagtggaatgagcgtgtcccctagagttcctgcccaggatatgaaagaaagccaagaa 616
||| ||||||||||| |||| || ||||| || | || ||| |||||||| ||||||
Sbjct: 310 caaggtggaatgagcctgtctccccgagtttctactcaagatgcaaaagaaagtcaagaa 369
Query: 617 gttaaagaagcactgagagcgcagatggaagtccaaagaagactgcatgaacaagtggag 676
||||||||||| |||||||| |||||||| | ||| |||| ||||||||||||||||||
Sbjct: 370 gttaaagaagccctgagagcacagatggagatgcaacgaagcctgcatgaacaagtggag 429
>gb|BQ758625.1|BQ758625 EBma07_SQ002_G09_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ002_G09 5', mRNA sequence
Length = 686
Score = 317 bits (160), Expect = 4e-085
Identities = 311/360 (86%), Gaps = 1/360 (0%)
Strand = Plus / Plus
Query: 318 acggcggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgac 377
||||| |||||||||||| | || || ||||||||||||||||||||||| |||||||||
Sbjct: 70 acggctgaccccaagccccgcctccgctggacggccgacctccacgagcgcttcgtcgac 129
Query: 378 gccgtggcccagctcggcggacccgagaaagcaacaccaaaaa-tatcttaaggacaatg 436
||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 130 gccgtcgcccagctcggcgggcccgagaaagcaacaccaaaaactatcttaaggacaatg 189
Query: 437 ggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaatacagattaggg 496
|| || ||||| || || ||||| ||||||||||| |||||||||||||||||| | |||
Sbjct: 190 ggtgtaaagggactcacacttttccacttgaagagtcatcttcagaaatacagaatgggg 249
Query: 497 aaacaatctggtaaggagggatcagagcaatctaaagatgcatcctatcttctagatgct 556
|||||| |||| || ||| | |||||||||||||||| ||||||||||| ||||||
Sbjct: 250 aaacaaactggcaaagagacgccggagcaatctaaagatgggtcctatcttcttgatgct 309
Query: 557 caaagtggaatgagcgtgtcccctagagttcctgcccaggatatgaaagaaagccaagaa 616
||| ||||||||||| |||| || ||||| || | || ||| |||||||| ||||||
Sbjct: 310 caaggtggaatgagcctgtctccccgagtttctactcaagatgcaaaagaaagtcaagaa 369
Query: 617 gttaaagaagcactgagagcgcagatggaagtccaaagaagactgcatgaacaagtggag 676
||||||||||| |||||||| |||||||| | ||| |||| ||||||||||||||||||
Sbjct: 370 gttaaagaagccctgagagcacagatggagatgcaacgaagcctgcatgaacaagtggag 429
>gb|BQ758717.1|BQ758717 EBma07_SQ002_I14_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ002_I14 5', mRNA sequence
Length = 592
Score = 317 bits (160), Expect = 4e-085
Identities = 311/360 (86%), Gaps = 1/360 (0%)
Strand = Plus / Plus
Query: 318 acggcggaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgac 377
||||| |||||||||||| | || || ||||||||||||||||||||||| |||||||||
Sbjct: 70 acggctgaccccaagccccgcctccgctggacggccgacctccacgagcgcttcgtcgac 129
Query: 378 gccgtggcccagctcggcggacccgagaaagcaacaccaaaaa-tatcttaaggacaatg 436
||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct: 130 gccgtcgcccagctcggcgggcccgagaaagcaacaccaaaaactatcttaaggacaatg 189
Query: 437 ggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaatacagattaggg 496
|| || ||||| || || ||||| ||||||||||| |||||||||||||||||| | |||
Sbjct: 190 ggtgtaaagggactcacacttttccacttgaagagtcatcttcagaaatacagaatgggg 249
Query: 497 aaacaatctggtaaggagggatcagagcaatctaaagatgcatcctatcttctagatgct 556
|||||| |||| || ||| | |||||||||||||||| ||||||||||| ||||||
Sbjct: 250 aaacaaactggcaaagagacgccggagcaatctaaagatgggtcctatcttcttgatgct 309
Query: 557 caaagtggaatgagcgtgtcccctagagttcctgcccaggatatgaaagaaagccaagaa 616
||| ||||||||||| |||| || ||||| || | || ||| |||||||| ||||||
Sbjct: 310 caaggtggaatgagcctgtctccccgagtttctactcaagatgcaaaagaaagtcaagaa 369
Query: 617 gttaaagaagcactgagagcgcagatggaagtccaaagaagactgcatgaacaagtggag 676
||||||||||| |||||||| |||||||| | ||| |||| ||||||||||||||||||
Sbjct: 370 gttaaagaagccctgagagcacagatggagatgcaacgaagcctgcatgaacaagtggag 429
>gb|BQ760943.1|BQ760943 EBro03_SQ003_O16_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ003_O16 5', mRNA sequence
Length = 540
Score = 317 bits (160), Expect = 4e-085
Identities = 384/456 (84%), Gaps = 7/456 (1%)
Strand = Plus / Plus
Query: 212 ggaggaagagatgttcccgcctggcctgatccaccaccgccctgacgcccccgttcccgg 271
|||||| ||||||||||| ||||||||||||||||||||| | |||| ||| | |||||
Sbjct: 23 ggaggaggagatgttcccccctggcctgatccaccaccgcgcggacggcccggggcccgg 82
Query: 272 cgatggggcgacacgctccggccccggcgggccgagccttgtactgacggcggaccccaa 331
||| | | || ||||||||| |||| || ||||| || || ||||| ||||||||
Sbjct: 83 cgaggtgccg---cgctccggc---ggcgcccccagcctcgtgctcacggctgaccccaa 136
Query: 332 gcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagct 391
|||| | || || ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 137 gccccgcctccgctggacggccgacctccacgagcgcttcgtcgacgccgtcgcccagct 196
Query: 392 cggcggacccgagaaagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtct 450
|||||| |||||||||||||||||||||| |||||||||||||||||| || ||||| ||
Sbjct: 197 cggcgggcccgagaaagcaacaccaaaaactatcttaaggacaatgggtgtaaagggact 256
Query: 451 tactctttttcacttgaagagccatcttcagaaatacagattagggaaacaatctggtaa 510
|| ||||| ||||||||||| |||||||||||||||||| | ||||||||| |||| ||
Sbjct: 257 cacacttttccacttgaagagtcatcttcagaaatacagaatggggaaacaaactggcaa 316
Query: 511 ggagggatcagagcaatctaaagatgcatcctatcttctagatgctcaaagtggaatgag 570
||| | |||||||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct: 317 agagacgccggagcaatctaaagatgggtcctatcttcttgatgctcaaggtggaatgag 376
Query: 571 cgtgtcccctagagttcctgcccaggatatgaaagaaagccaagaagttaaagaagcact 630
| |||| || ||||| || | || ||| |||||||| ||||||||||||||||| ||
Sbjct: 377 cctgtctccccgagtttctactcaagatgcaaaagaaagtcaagaagttaaagaagccct 436
Query: 631 gagagcgcagatggaagtccaaagaagactgcatga 666
|||||| |||||||| | ||| |||| ||||||||
Sbjct: 437 gagagcacagatggagatgcaacgaagcctgcatga 472
>gb|BI779229.2|BI779229 EBro01_SQ003_G07_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ003_G07 5', mRNA sequence
Length = 446
Score = 272 bits (137), Expect = 2e-071
Identities = 361/433 (83%), Gaps = 7/433 (1%)
Strand = Plus / Plus
Query: 212 ggaggaagagatgttcccgcctggcctgatccaccaccgccctgacgcccccgttcccgg 271
|||||| ||||||||||| ||||||||||||||||||||| | |||| ||| | |||||
Sbjct: 20 ggaggaggagatgttcccccctggcctgatccaccaccgcgcggacggcccggggcccgg 79
Query: 272 cgatggggcgacacgctccggccccggcgggccgagccttgtactgacggcggaccccaa 331
||| | | || ||||||||| |||| || ||||| || || |||| ||||||||
Sbjct: 80 cgaggtgccg---cgctccggc---ggcgcccccagcctcgtgctcacgggtgaccccaa 133
Query: 332 gcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtggcccagct 391
|||| | || || ||| ||| ||||||||||||||| |||||||||||||| ||||||||
Sbjct: 134 gccccgcctccgctgggcgggcgacctccacgagcgcttcgtcgacgccgtcgcccagct 193
Query: 392 cggcggacccgagaaagcaacaccaaaaa-tatcttaaggacaatgggcgtcaagggtct 450
|||||| |||||||||||||||||||||| |||||||||| ||||||| || ||||| ||
Sbjct: 194 cggcgggcccgagaaagcaacaccaaaaactatcttaagggcaatgggtgtaaagggact 253
Query: 451 tactctttttcacttgaagagccatcttcagaaatacagattagggaaacaatctggtaa 510
|| ||||| ||||||||||| |||||||||||||||||| | ||||||||| |||| ||
Sbjct: 254 cacacttttccacttgaagagtcatcttcagaaatacagaatggggaaacaaactggcaa 313
Query: 511 ggagggatcagagcaatctaaagatgcatcctatcttctagatgctcaaagtggaatgag 570
||| | |||||||||||||||| ||||||||||| ||||||||| | ||||||||
Sbjct: 314 agagacgccggagcaatctaaagatgggtcctatcttcttgatgctcaagggggaatgag 373
Query: 571 cgtgtcccctagagttcctgcccaggatatgaaagaaagccaagaagttaaagaagcact 630
| |||| || ||||| || | || ||| |||||||| ||||||||||||||||| ||
Sbjct: 374 cctgtctccccgagtttctactcaagatgcaaaagaaagtcaagaagttaaagaagccct 433
Query: 631 gagagcgcagatg 643
|||||| ||||||
Sbjct: 434 gagagcacagatg 446
>gb|BF626517.2|BF626517 HVSMEa0018J24f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018J24f, mRNA sequence
Length = 764
Score = 137 bits (69), Expect = 7e-031
Identities = 215/261 (82%), Gaps = 2/261 (0%)
Strand = Plus / Plus
Query: 318 acggcggaccccaagccc-aggctgcggtggacggccgacctccacgagcgtttcgtcga 376
||||| |||||||||||| || || || || ||||||||||| | ||||| || ||| |
Sbjct: 122 acggctgaccccaagccccagcctccgctgcacggccgacctggatgagcgcttggtcca 181
Query: 377 cgccgtggcccagctcggcggacccgagaaagcaacaccaaaaa-tatcttaaggacaat 435
||||| ||||| || ||||| ||||||| ||||||||||||| |||||||||||||||
Sbjct: 182 cgccgccgcccaactgggcgggcccgagaccgcaacaccaaaaactatcttaaggacaat 241
Query: 436 gggcgtcaagggtcttactctttttcacttgaagagccatcttcagaaatacagattagg 495
||||| ||||| || || || || |||||||| || ||||||||||||||| | | ||
Sbjct: 242 gggcgaaaagggactcacactcttccacttgaacagtaatcttcagaaatacacaatggg 301
Query: 496 gaaacaatctggtaaggagggatcagagcaatctaaagatgcatcctatcttctagatgc 555
||||||| |||| || ||| | |||||||||||||||| ||||||||||| |||||
Sbjct: 302 gaaacaaactggcaaagagacgccggagcaatctaaagatgggtcctatcttcttgatgc 361
Query: 556 tcaaagtggaatgagcgtgtc 576
|||| ||||||||||| ||||
Sbjct: 362 tcaacgtggaatgagcctgtc 382
Score = 61.9 bits (31), Expect = 3e-008
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 606 aaagccaagaagttaaagaagcactgagagcgcagatggaagtccaaagaagactgcatg 665
|||| |||||| ||||| |||| ||||||||||||| ||| | ||| |||| |||||||
Sbjct: 412 aaagtcaagaatttaaaaaagccctgagagcgcagaaggagatgcaacgaagcctgcatg 471
Query: 666 aacaagtggag 676
|||||||||||
Sbjct: 472 aacaagtggag 482
>gb|BE060066.3|BE060066 HVSMEg0011F06f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011F06f, mRNA sequence
Length = 542
Score = 56.0 bits (28), Expect = 2e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 212 ggaggaagagatgttcccgcctggcctgatccaccaccgc 251
|||||| |||||||| || |||||||||||||||||||||
Sbjct: 424 ggaggaggagatgtttccccctggcctgatccaccaccgc 463
Score = 42.1 bits (21), Expect = 0.032
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 126 ttggatccttcgcttttgggg 146
|||||||||||||||||||||
Sbjct: 348 ttggatccttcgcttttgggg 368
>gb|CA032790.1|CA032790 HX14D10r HX Hordeum vulgare subsp. vulgare cDNA clone HX14D10
5-PRIME, mRNA sequence
Length = 563
Score = 46.1 bits (23), Expect = 0.002
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 324 gaccccaagcccaggctgcggtggacggccgacctccacgagcgtttcgtcgacgccgtg 383
|||||||||||| | || |||||||| | ||| ||||| || || |||||||| |||||
Sbjct: 235 gaccccaagccccgcctccggtggaccgtcgagctccatgaccgcttcgtcgatgccgtc 294
Query: 384 gcccagctcgg 394
|| ||||||||
Sbjct: 295 gcgcagctcgg 305
>gb|BM377243.2|BM377243 EBem05_SQ004_I18_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ004_I18 5', mRNA sequence
Length = 589
Score = 40.1 bits (20), Expect = 0.13
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 364 agcgtttcgtcgacgccgtggcccagctcggc 395
|||| ||||||||||||||||| || ||||||
Sbjct: 448 agcgcttcgtcgacgccgtggcgcacctcggc 479
>gb|AV928803.1|AV928803 AV928803 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd15l19 3', mRNA sequence
Length = 682
Score = 38.2 bits (19), Expect = 0.49
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 465 tgaagagccatcttcagaaatac 487
||||||||||||| |||||||||
Sbjct: 422 tgaagagccatctccagaaatac 400
>gb|CA005257.1|CA005257 HU11E24u HU Hordeum vulgare subsp. vulgare cDNA clone HU11E24
3-PRIME, mRNA sequence
Length = 530
Score = 38.2 bits (19), Expect = 0.49
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 654 gaagactgcatgaacaagtggag 676
|||| ||||||||||||||||||
Sbjct: 516 gaagcctgcatgaacaagtggag 494
>gb|CA005509.1|CA005509 HU10C10u HU Hordeum vulgare subsp. vulgare cDNA clone HU10C10
3-PRIME, mRNA sequence
Length = 539
Score = 38.2 bits (19), Expect = 0.49
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 465 tgaagagccatcttcagaaatac 487
||||||||||||| |||||||||
Sbjct: 441 tgaagagccatctccagaaatac 419
>gb|CA022958.1|CA022958 HZ44N10r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ44N10
5-PRIME, mRNA sequence
Length = 492
Score = 38.2 bits (19), Expect = 0.49
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 465 tgaagagccatcttcagaaatac 487
||||||||||||| |||||||||
Sbjct: 46 tgaagagccatctccagaaatac 68
>gb|CB874801.1|CB874801 HX06F18w HX Hordeum vulgare subsp. vulgare cDNA clone HX06F18
3-PRIME, mRNA sequence
Length = 519
Score = 38.2 bits (19), Expect = 0.49
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 654 gaagactgcatgaacaagtggag 676
|||| ||||||||||||||||||
Sbjct: 501 gaagcctgcatgaacaagtggag 479
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 95,824
Number of Sequences: 312970
Number of extensions: 95824
Number of successful extensions: 27489
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27430
Number of HSP's gapped (non-prelim): 30
length of query: 915
length of database: 175,134,539
effective HSP length: 19
effective length of query: 896
effective length of database: 169,188,109
effective search space: 151592545664
effective search space used: 151592545664
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)