BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5351892.2.1
(466 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV934849.1|AV934849 AV934849 K. Sato unpublished cDNA li... 88 3e-016
gb|AV934996.1|AV934996 AV934996 K. Sato unpublished cDNA li... 88 3e-016
gb|BQ760258.1|BQ760258 EBpi07_SQ003_O13_R pistil, 12 DPA, n... 42 0.016
>gb|AV934849.1|AV934849 AV934849 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal1o03 3', mRNA sequence
Length = 554
Score = 87.7 bits (44), Expect = 3e-016
Identities = 80/92 (86%)
Strand = Plus / Minus
Query: 116 ctacgactgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggca 175
||||||||||| ||||||||||||| ||| |||| ||||| |||| |||||| ||||
Sbjct: 125 ctacgactgcacggcgaggaaggacgtggatgtggggaaggtgctgccgtacgtgcggca 66
Query: 176 ctgcgaggacgtgagctgggggctcaagattg 207
||| |||||||||||||||||| |||||||||
Sbjct: 65 ctgtgaggacgtgagctgggggatcaagattg 34
>gb|AV934996.1|AV934996 AV934996 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2h20 3', mRNA sequence
Length = 593
Score = 87.7 bits (44), Expect = 3e-016
Identities = 80/92 (86%)
Strand = Plus / Minus
Query: 116 ctacgactgcaaggcgaggaaggacaccgatttgggcaaggtagtgccttacgtgaggca 175
||||||||||| ||||||||||||| ||| |||| ||||| |||| |||||| ||||
Sbjct: 125 ctacgactgcacggcgaggaaggacgtggatgtggggaaggtgctgccgtacgtgcggca 66
Query: 176 ctgcgaggacgtgagctgggggctcaagattg 207
||| |||||||||||||||||| |||||||||
Sbjct: 65 ctgtgaggacgtgagctgggggatcaagattg 34
>gb|BQ760258.1|BQ760258 EBpi07_SQ003_O13_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ003_O13 5', mRNA sequence
Length = 329
Score = 42.1 bits (21), Expect = 0.016
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 290 ttatgcttattcttattcttcttct 314
|||| ||||||||||||||||||||
Sbjct: 311 ttattcttattcttattcttcttct 287
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 53,282
Number of Sequences: 312970
Number of extensions: 53282
Number of successful extensions: 17349
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17341
Number of HSP's gapped (non-prelim): 8
length of query: 466
length of database: 175,134,539
effective HSP length: 18
effective length of query: 448
effective length of database: 169,501,079
effective search space: 75936483392
effective search space used: 75936483392
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)