BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4695478.2.1
(1201 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF066116.1|BF066116 HV_CEb0014O07f Hordeum vulgare seedl... 167 1e-039
gb|BF066138.1|BF066138 HV_CEb0014P07f Hordeum vulgare seedl... 167 1e-039
gb|BM097482.2|BM097482 EBro05_SQ003_L07_R root, 3 week, red... 117 9e-025
gb|BJ468735.1|BJ468735 BJ468735 K. Sato unpublished cDNA li... 111 5e-023
gb|AV836450.1|AV836450 AV836450 K. Sato unpublished cDNA li... 103 1e-020
gb|AV836954.1|AV836954 AV836954 K. Sato unpublished cDNA li... 103 1e-020
gb|BF627941.2|BF627941 HVSMEb0006M19f Hordeum vulgare seedl... 101 5e-020
gb|BG365391.1|BG365391 HVSMEi0002I06f Hordeum vulgare 20 DA... 96 3e-018
gb|BE196376.3|BE196376 HVSMEh0092C03f Hordeum vulgare 5-45 ... 96 3e-018
gb|BE214863.2|BE214863 HV_CEb0004O14f Hordeum vulgare seedl... 90 2e-016
gb|BJ450325.1|BJ450325 BJ450325 K. Sato unpublished cDNA li... 90 2e-016
gb|BJ457744.1|BJ457744 BJ457744 K. Sato unpublished cDNA li... 90 2e-016
gb|BI948507.1|BI948507 HVSMEl0009O08f Hordeum vulgare spike... 88 8e-016
gb|AW983188.3|AW983188 HVSMEg0008J14f Hordeum vulgare pre-a... 84 1e-014
gb|BU980008.1|BU980008 HA18D04r HA Hordeum vulgare subsp. v... 84 1e-014
gb|CA003151.1|CA003151 HS09J04r HS Hordeum vulgare subsp. v... 84 1e-014
gb|BI959232.1|BI959232 HVSMEn0018M12f Hordeum vulgare rachi... 82 5e-014
gb|AL504779.1|AL504779 AL504779 Hordeum vulgare Barke roots... 80 2e-013
gb|BF628107.2|BF628107 HVSMEb0003C11f Hordeum vulgare seedl... 80 2e-013
gb|BF253936.2|BF253936 HVSMEf0002I16f Hordeum vulgare seedl... 80 2e-013
gb|BF255832.2|BF255832 HVSMEf0007P02f Hordeum vulgare seedl... 80 2e-013
gb|AW982651.2|AW982651 HVSMEg0003N13f Hordeum vulgare pre-a... 80 2e-013
gb|BE196379.3|BE196379 HVSMEh0092C06f Hordeum vulgare 5-45 ... 80 2e-013
gb|BQ459797.1|BQ459797 HA08A23r HA Hordeum vulgare subsp. v... 80 2e-013
gb|BQ460124.1|BQ460124 HA07C19r HA Hordeum vulgare subsp. v... 80 2e-013
gb|BQ467571.1|BQ467571 HS04D07r HS Hordeum vulgare subsp. v... 80 2e-013
gb|BQ470739.1|BQ470739 HX03O06r HX Hordeum vulgare subsp. v... 80 2e-013
gb|BU973416.1|BU973416 HB24O01r BC Hordeum vulgare subsp. v... 80 2e-013
gb|BU980158.1|BU980158 HA18N13r HA Hordeum vulgare subsp. v... 80 2e-013
gb|BU986380.1|BU986380 HF11K09r HF Hordeum vulgare subsp. v... 80 2e-013
gb|BU986537.1|BU986537 HF12C17r HF Hordeum vulgare subsp. v... 80 2e-013
gb|CA002692.1|CA002692 HS08E02r HS Hordeum vulgare subsp. v... 80 2e-013
gb|CA004617.1|CA004617 HS18C15r HS Hordeum vulgare subsp. v... 80 2e-013
gb|CA020126.1|CA020126 HV14G15r HV Hordeum vulgare subsp. v... 80 2e-013
gb|CA021911.1|CA021911 HZ41I09r HZ Hordeum vulgare subsp. v... 80 2e-013
gb|CA023175.1|CA023175 HZ45H08r HZ Hordeum vulgare subsp. v... 80 2e-013
gb|CK123698.1|CK123698 BES1824105b24 BES1824 Hordeum vulgar... 80 2e-013
gb|BE214986.2|BE214986 HV_CEb0005H03f Hordeum vulgare seedl... 76 3e-012
gb|AL505150.1|AL505150 AL505150 Hordeum vulgare Barke roots... 74 1e-011
gb|BF259786.2|BF259786 HVSMEf0020E05f Hordeum vulgare seedl... 72 5e-011
gb|BE454559.2|BE454559 HVSMEh0094E03f Hordeum vulgare 5-45 ... 72 5e-011
gb|BF262808.2|BF262808 HV_CEa0005A08f Hordeum vulgare seedl... 72 5e-011
gb|BF265665.2|BF265665 HV_CEa0013A06f Hordeum vulgare seedl... 72 5e-011
gb|AV909332.1|AV909332 AV909332 K. Sato unpublished cDNA li... 72 5e-011
gb|AV913567.1|AV913567 AV913567 K. Sato unpublished cDNA li... 72 5e-011
gb|AV926665.1|AV926665 AV926665 K. Sato unpublished cDNA li... 72 5e-011
gb|AV934049.1|AV934049 AV934049 K. Sato unpublished cDNA li... 72 5e-011
gb|AV934152.1|AV934152 AV934152 K. Sato unpublished cDNA li... 72 5e-011
gb|AV934159.1|AV934159 AV934159 K. Sato unpublished cDNA li... 72 5e-011
gb|BM816674.1|BM816674 HB01C06_T3.ab1 HB Hordeum vulgare su... 72 5e-011
gb|BJ544054.1|BJ544054 BJ544054 K. Sato unpublished cDNA li... 72 5e-011
gb|BF064595.2|BF064595 HV_CEb0016A19f Hordeum vulgare seedl... 70 2e-010
gb|BU985911.1|BU985911 HF08P24r HF Hordeum vulgare subsp. v... 68 7e-010
gb|CA031581.1|CA031581 HX10G17r HX Hordeum vulgare subsp. v... 68 7e-010
gb|CA032017.1|CA032017 HX11M09r HX Hordeum vulgare subsp. v... 68 7e-010
gb|BF258617.2|BF258617 HVSMEf0016D02f Hordeum vulgare seedl... 64 1e-008
gb|BJ452084.1|BJ452084 BJ452084 K. Sato unpublished cDNA li... 62 5e-008
gb|BF264429.3|BF264429 HV_CEa0009G11f Hordeum vulgare seedl... 60 2e-007
gb|BU972166.1|BU972166 HB20N02r BC Hordeum vulgare subsp. v... 58 7e-007
gb|AL450961.1|AL450961 AL450961 Hordeum vulgare Barke etiol... 56 3e-006
gb|AL506722.1|AL506722 AL506722 Hordeum vulgare Barke devel... 56 3e-006
gb|BE602876.2|BE602876 HVSMEh0100H17f Hordeum vulgare 5-45 ... 56 3e-006
gb|BE215014.1|BE215014 HV_CEb0005I17f Hordeum vulgare seedl... 56 3e-006
gb|BE559021.2|BE559021 HV_CEb0022F12f Hordeum vulgare seedl... 56 3e-006
gb|AV913390.1|AV913390 AV913390 K. Sato unpublished cDNA li... 56 3e-006
gb|AV913397.1|AV913397 AV913397 K. Sato unpublished cDNA li... 56 3e-006
gb|AV914608.1|AV914608 AV914608 K. Sato unpublished cDNA li... 56 3e-006
gb|AV915311.1|AV915311 AV915311 K. Sato unpublished cDNA li... 56 3e-006
gb|BJ463463.1|BJ463463 BJ463463 K. Sato unpublished cDNA li... 56 3e-006
gb|BJ464137.1|BJ464137 BJ464137 K. Sato unpublished cDNA li... 56 3e-006
gb|BM369883.2|BM369883 EBem07_SQ004_O04_R embryo, 28 DPA, n... 56 3e-006
gb|CA007645.1|CA007645 HU08J12r HU Hordeum vulgare subsp. v... 56 3e-006
gb|CA011608.1|CA011608 HT03A12r HT Hordeum vulgare subsp. v... 56 3e-006
gb|CA019777.1|CA019777 HV13C06r HV Hordeum vulgare subsp. v... 56 3e-006
gb|CA023572.1|CA023572 HZ46L02r HZ Hordeum vulgare subsp. v... 56 3e-006
gb|AL503986.1|AL503986 AL503986 Hordeum vulgare Barke roots... 54 1e-005
gb|AL505019.1|AL505019 AL505019 Hordeum vulgare Barke roots... 54 1e-005
gb|BG369168.1|BG369168 HVSMEi0022M03f Hordeum vulgare 20 DA... 54 1e-005
gb|BI950770.1|BI950770 HVSMEl0023C06f Hordeum vulgare spike... 54 1e-005
gb|BI958620.1|BI958620 HVSMEn0015P02f Hordeum vulgare rachi... 54 1e-005
gb|BM444089.1|BM444089 EBem09_SQ004_C03_R embryo, 1 Day ger... 52 4e-005
emb|AJ234689.1|HVU234689 Hordeum vulgare genomic DNA fragme... 52 4e-005
gb|BI957946.1|BI957946 HVSMEn0012F23f Hordeum vulgare rachi... 48 7e-004
gb|BI957985.1|BI957985 HVSMEn0012J23f Hordeum vulgare rachi... 48 7e-004
gb|BI957975.1|BI957975 HVSMEn0012L23f Hordeum vulgare rachi... 48 7e-004
gb|BI960699.1|BI960699 HVSMEn0025O19f Hordeum vulgare rachi... 48 7e-004
gb|BU996119.1|BU996119 HM12I01r HM Hordeum vulgare subsp. v... 48 7e-004
gb|BG301229.1|BG301229 HVSMEb0020B01f Hordeum vulgare seedl... 46 0.003
gb|BI958105.1|BI958105 HVSMEn0013G15f Hordeum vulgare rachi... 46 0.003
gb|BI958862.1|BI958862 HVSMEn0016O20f Hordeum vulgare rachi... 46 0.003
gb|BI960557.1|BI960557 HVSMEn0025A09f Hordeum vulgare rachi... 46 0.003
gb|BG344152.2|BG344152 HVSMEg0007N17f Hordeum vulgare pre-a... 46 0.003
gb|BE195648.3|BE195648 HVSMEh0090A21f Hordeum vulgare 5-45 ... 46 0.003
gb|BQ763369.1|BQ763369 EBro02_SQ008_J04_R root, 3 week, hyd... 46 0.003
gb|BQ767762.1|BQ767762 EBro08_SQ009_D21 _R root, 3 week, dr... 46 0.003
gb|BU988879.1|BU988879 HF18P19r HF Hordeum vulgare subsp. v... 46 0.003
gb|BU989165.1|BU989165 HF19P19r HF Hordeum vulgare subsp. v... 46 0.003
gb|BM442873.2|BM442873 EBro02_SQ001_K13_R root, 3 week, hyd... 44 0.011
gb|BM443024.2|BM443024 EBro02_SQ002_D15_R root, 3 week, hyd... 44 0.011
gb|BI777845.2|BI777845 EBro08_SQ002_E16_R root, 3 week, dro... 44 0.011
gb|BQ763022.1|BQ763022 EBro02_SQ006_M20_R root, 3 week, hyd... 44 0.011
gb|BQ763026.1|BQ763026 EBro02_SQ006_N19_R root, 3 week, hyd... 44 0.011
gb|BU990514.1|BU990514 HF25E12r HF Hordeum vulgare subsp. v... 42 0.042
gb|AL507720.1|AL507720 AL507720 Hordeum vulgare Barke devel... 40 0.17
gb|BI953687.1|BI953687 HVSMEm0013N22f Hordeum vulgare green... 40 0.17
gb|BF265663.2|BF265663 HV_CEa0013A04f Hordeum vulgare seedl... 40 0.17
gb|BU997526.1|BU997526 HI08E02r HI Hordeum vulgare subsp. v... 40 0.17
>gb|BF066116.1|BF066116 HV_CEb0014O07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0014O07f, mRNA sequence
Length = 821
Score = 167 bits (84), Expect = 1e-039
Identities = 186/220 (84%)
Strand = Plus / Minus
Query: 824 gaaggaacaggagtggcgacatgaaagactccctggcaccctgcgactgcacccgccata 883
|||||||| ||||| |||||||| || ||||| ||||| || ||| ||| | |||||
Sbjct: 324 gaaggaacgggagtcgcgacatggaaaactccttggcatcccacgatggcagctgccatc 265
Query: 884 gcgtcgtagtcaaggacatcagccttgaaaagcttgaggttttcggaagcattctctaac 943
|| ||||| ||||||| ||||||||||| ||| |||||||||||||||| |||||||||
Sbjct: 264 gcatcgtaatcaaggaggtcagccttgaagagcctgaggttttcggaagcgttctctaac 205
Query: 944 cgcttcagatgagcggttttattgtcactgaggtcgcggacggtgccgtggacggtgtag 1003
||| ||||||| |||| || | | | ||||| |||||||||||||||||||| ||||
Sbjct: 204 cgcctcagatggccggtcttctccacgccgaggtggcggacggtgccgtggacggcgtag 145
Query: 1004 ccacgggagaggaggagcttgacgagccacgaggcgatgt 1043
|| ||||||||||||||||| |||||||||||||||||||
Sbjct: 144 ccgcgggagaggaggagcttcacgagccacgaggcgatgt 105
Score = 99.6 bits (50), Expect = 2e-019
Identities = 92/106 (86%)
Strand = Plus / Minus
Query: 621 tcctgcagaactctttatctgaccagcagttctcatctttgatcttgtctttgggccagt 680
||||||| || ||||| || ||||||||| |||||||| |||| || ||| ||||||||
Sbjct: 655 tcctgcaaaattctttgtccgaccagcagctctcatctctgattttaccttggggccagt 596
Query: 681 ctttcgggttgatctcaacggcaaccatggatgaaacgacgaccac 726
|||||||||||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 595 ctttcgggttgatctcgacggcgaccatggatgacacgacaaccac 550
>gb|BF066138.1|BF066138 HV_CEb0014P07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0014P07f, mRNA sequence
Length = 821
Score = 167 bits (84), Expect = 1e-039
Identities = 186/220 (84%)
Strand = Plus / Minus
Query: 824 gaaggaacaggagtggcgacatgaaagactccctggcaccctgcgactgcacccgccata 883
|||||||| ||||| |||||||| || ||||| ||||| || ||| ||| | |||||
Sbjct: 324 gaaggaacgggagtcgcgacatggaaaactccttggcatcccacgatggcagctgccatc 265
Query: 884 gcgtcgtagtcaaggacatcagccttgaaaagcttgaggttttcggaagcattctctaac 943
|| ||||| ||||||| ||||||||||| ||| |||||||||||||||| |||||||||
Sbjct: 264 gcatcgtaatcaaggaggtcagccttgaagagcctgaggttttcggaagcgttctctaac 205
Query: 944 cgcttcagatgagcggttttattgtcactgaggtcgcggacggtgccgtggacggtgtag 1003
||| ||||||| |||| || | | | ||||| |||||||||||||||||||| ||||
Sbjct: 204 cgcctcagatggccggtcttctccacgccgaggtggcggacggtgccgtggacggcgtag 145
Query: 1004 ccacgggagaggaggagcttgacgagccacgaggcgatgt 1043
|| ||||||||||||||||| |||||||||||||||||||
Sbjct: 144 ccgcgggagaggaggagcttcacgagccacgaggcgatgt 105
Score = 99.6 bits (50), Expect = 2e-019
Identities = 92/106 (86%)
Strand = Plus / Minus
Query: 621 tcctgcagaactctttatctgaccagcagttctcatctttgatcttgtctttgggccagt 680
||||||| || ||||| || ||||||||| |||||||| |||| || ||| ||||||||
Sbjct: 655 tcctgcaaaattctttgtccgaccagcagctctcatctctgattttaccttggggccagt 596
Query: 681 ctttcgggttgatctcaacggcaaccatggatgaaacgacgaccac 726
|||||||||||||||| ||||| ||||||||||| ||||| |||||
Sbjct: 595 ctttcgggttgatctcgacggcgaccatggatgacacgacaaccac 550
>gb|BM097482.2|BM097482 EBro05_SQ003_L07_R root, 3 week, reduced light, cv Optic, EBro05
Hordeum vulgare subsp. vulgare cDNA clone
EBro05_SQ003_L07 5', mRNA sequence
Length = 353
Score = 117 bits (59), Expect = 9e-025
Identities = 119/139 (85%)
Strand = Plus / Minus
Query: 905 gccttgaaaagcttgaggttttcggaagcattctctaaccgcttcagatgagcggtttta 964
||||||| ||||||||| ||||| || || ||||||| | | ||||||| |||| ||
Sbjct: 221 gccttgataagcttgagattttcagatgcgttctctagcgacctcagatggccggtcttc 162
Query: 965 ttgtcactgaggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttg 1024
|| || | |||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 161 ttctcgccaaggtcgcggacggtgccgcggacggtgtagccgcgggagaggaggagcttc 102
Query: 1025 acgagccacgaggcgatgt 1043
|||||||||||||||||||
Sbjct: 101 acgagccacgaggcgatgt 83
>gb|BJ468735.1|BJ468735 BJ468735 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd27a15 5', mRNA sequence
Length = 505
Score = 111 bits (56), Expect = 5e-023
Identities = 71/76 (93%)
Strand = Plus / Minus
Query: 967 gtcactgaggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgac 1026
||||||| |||||||||||||| ||||||||| |||||| ||||||||||| ||||||||
Sbjct: 98 gtcactggggtcgcggacggtggcgtggacggcgtagccccgggagaggagcagcttgac 39
Query: 1027 gagccacgaggcgatg 1042
||||||||||||||||
Sbjct: 38 gagccacgaggcgatg 23
>gb|AV836450.1|AV836450 AV836450 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum vulgare
subsp. vulgare cDNA clone basd16h21, mRNA sequence
Length = 566
Score = 103 bits (52), Expect = 1e-020
Identities = 65/70 (92%)
Strand = Plus / Minus
Query: 974 aggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccac 1033
|||||||||||||||||| ||||||||||||| |||||||||||||| | |||||||||
Sbjct: 88 aggtcgcggacggtgccgcggacggtgtagccgcgggagaggaggagntncacgagccac 29
Query: 1034 gaggcgatgt 1043
||||||||||
Sbjct: 28 gaggcgatgt 19
Score = 81.8 bits (41), Expect = 5e-014
Identities = 89/105 (84%)
Strand = Plus / Minus
Query: 619 gttcctgcagaactctttatctgaccagcagttctcatctttgatcttgtctttgggcca 678
||||||||| |||||| | |||||||| || | ||||||||||||||||| ||||||
Sbjct: 444 gttcctgcaaaactctctgtctgaccaacaagtttcatctttgatcttgtcggcgggcca 385
Query: 679 gtctttcgggttgatctcaacggcaaccatggatgaaacgacgac 723
|||||||||||||| || ||||| || |||||||| ||||||||
Sbjct: 384 atctttcgggttgatatcgacggcgactatggatgagacgacgac 340
>gb|AV836954.1|AV836954 AV836954 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd16h21, mRNA
sequence
Length = 627
Score = 103 bits (52), Expect = 1e-020
Identities = 198/246 (80%), Gaps = 3/246 (1%)
Strand = Plus / Plus
Query: 189 tccatcccagtttcttgagcttgtcggacgtcattggagctgggtgctccatgtcgtaga 248
|||| ||||| |||||||||||||||| |||||| ||||| ||||| |||||||| |||
Sbjct: 385 tccaccccagcttcttgagcttgtcggtcgtcatcggagccgggtgatccatgtcacaga 444
Query: 249 tgctctccttgctaatgaaagggtaatcatcagggtacatcgtcttcagcagctccagca 308
||||||||||||| | | ||| || ||||||||||| |||| |||| ||| |||
Sbjct: 445 tgctctccttgctgactagagg---atagtcagggtacatattcttgagcatgtcccgca 501
Query: 309 ggtcacgcgcgctgatgaaatgaggagcgcaaatgtgcctgccggaggcttgtggtgtct 368
|||| || ||| |||||| ||| || ||||| |||||||||||| ||| | || | ||
Sbjct: 502 ggtcgcgggcggtgatgacatgcggcgcgcagatgtgcctgccgacggcctcaggcgcct 561
Query: 369 cgtacacaagcaggagagcatcggcagtgtccctgacgtcgacgatgtgccaaagcttgt 428
|||| | || || ||||| ||||| ||||| | ||||||||||||||||| |||||||
Sbjct: 562 cgtagagcaggagcagagcgtcggcggtgtcgcgcacgtcgacgatgtgccacagcttgt 621
Query: 429 ccctca 434
||||||
Sbjct: 622 ccctca 627
>gb|BF627941.2|BF627941 HVSMEb0006M19f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0006M19f, mRNA sequence
Length = 772
Score = 101 bits (51), Expect = 5e-020
Identities = 75/83 (90%)
Strand = Plus / Minus
Query: 960 ttttattgtcactgaggtcgcggacggtgccgtggacggtgtagccacgggagaggagga 1019
|||||| ||| ||| |||||||||||||| |||||||| |||||| ||||||||||| |
Sbjct: 174 ttttatggtccctggggtcgcggacggtggtgtggacggcgtagccccgggagaggagca 115
Query: 1020 gcttgacgagccacgaggcgatg 1042
|||||||||||||||||||||||
Sbjct: 114 gcttgacgagccacgaggcgatg 92
>gb|BG365391.1|BG365391 HVSMEi0002I06f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0002I06f, mRNA sequence
Length = 757
Score = 95.6 bits (48), Expect = 3e-018
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
|||||||||||||| ||| ||||| |||||| ||||||||||| ||||||||||||||||
Sbjct: 172 ggtcgcggacggtggcgttgacggcgtagccgcgggagaggagcagcttgacgagccacg 113
Query: 1035 aggcgatg 1042
||||||||
Sbjct: 112 aggcgatg 105
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 625 gcagaactctttatctgaccagcagttctcatcttt 660
|||||| ||||| ||||||||||| ||||||||||
Sbjct: 519 gcagaagtctttgtctgaccagcaactctcatcttt 484
>gb|BE196376.3|BE196376 HVSMEh0092C03f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0092C03f, mRNA sequence
Length = 975
Score = 95.6 bits (48), Expect = 3e-018
Identities = 63/68 (92%)
Strand = Plus / Minus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
|||||||||||||| ||| ||||| |||||| ||||||||||| ||||||||||||||||
Sbjct: 172 ggtcgcggacggtggcgttgacggcgtagccgcgggagaggagcagcttgacgagccacg 113
Query: 1035 aggcgatg 1042
||||||||
Sbjct: 112 aggcgatg 105
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 625 gcagaactctttatctgaccagcagttctcatcttt 660
|||||| ||||| ||||||||||| ||||||||||
Sbjct: 519 gcagaagtctttgtctgaccagcaactctcatcttt 484
>gb|BE214863.2|BE214863 HV_CEb0004O14f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0004O14f, mRNA sequence
Length = 636
Score = 89.7 bits (45), Expect = 2e-016
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
|||| ||||||||| ||||||||| |||||| ||||||||||| ||||||||||||||||
Sbjct: 136 ggtcncggacggtggcgtggacggcgtagccccgggagaggagcagcttgacgagccacg 77
Query: 1035 aggcgatg 1042
| ||||||
Sbjct: 76 atgcgatg 69
>gb|BJ450325.1|BJ450325 BJ450325 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak29b22 5', mRNA sequence
Length = 548
Score = 89.7 bits (45), Expect = 2e-016
Identities = 179/221 (80%), Gaps = 2/221 (0%)
Strand = Plus / Minus
Query: 279 cagggtacatcgtcttcagcagctccagcaggtcacgcgcgctgatgaaatgaggagcgc 338
|||||||||| |||| ||||| ||||||| || || ||| ||||||| ||||| ||||
Sbjct: 454 cagggtacatgctcttgagcaggcccagcagctcccgggcggtgatgaagtgaggcgcgc 395
Query: 339 aaatgtgcctgccggaggcttgtggtgtctcgtacacaagcaggagagcatcggcagtgt 398
| ||||||||||||| ||| | || | |||||| | || || || || ||||| ||
Sbjct: 394 agatgtgcctgccggtggcctcgggcgcctcgtagagcaggagcagcgcgtcggcgacgt 335
Query: 399 ccctgacgtcgacgatgtgccaaagcttgtccctcat-tcgatcaggtcctcctttcagg 457
| | |||||||||||||||||| |||||||||||| | ||| ||||| |||||| | |||
Sbjct: 334 cgcggacgtcgacgatgtgccacagcttgtccctcgtctcg-tcagggcctcctctgagg 276
Query: 458 aagtagacgaggaactgacagctcgtgttgagcgtcggctg 498
||||||| ||||||||| | ||||||||||| ||||||||
Sbjct: 275 aagtagatgaggaactggctgctcgtgttgatggtcggctg 235
Score = 58.0 bits (29), Expect = 7e-007
Identities = 77/92 (83%), Gaps = 1/92 (1%)
Strand = Plus / Minus
Query: 621 tcctgcagaactctttatctgaccagcagttctcatctttgatcttgtctttgggccagt 680
||||||| || ||||| || ||||||||| |||||||| |||| || ||| ||||||||
Sbjct: 112 tcctgcaaaattctttgtccgaccagcagctctcatctctgattttaccttggggccagt 53
Query: 681 ctttcgggttgatctcaacggcaaccatggat 712
|||| ||| | ||||| ||||| |||||||||
Sbjct: 52 cttt-ggggtnatctcgacggcgaccatggat 22
>gb|BJ457744.1|BJ457744 BJ457744 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak29b22 3', mRNA sequence
Length = 633
Score = 89.7 bits (45), Expect = 2e-016
Identities = 179/221 (80%), Gaps = 2/221 (0%)
Strand = Plus / Plus
Query: 279 cagggtacatcgtcttcagcagctccagcaggtcacgcgcgctgatgaaatgaggagcgc 338
|||||||||| |||| ||||| ||||||| || || ||| ||||||| ||||| ||||
Sbjct: 253 cagggtacatgctcttgagcaggcccagcagctcccgggcggtgatgaagtgaggcgcgc 312
Query: 339 aaatgtgcctgccggaggcttgtggtgtctcgtacacaagcaggagagcatcggcagtgt 398
| ||||||||||||| ||| | || | |||||| | || || || || ||||| ||
Sbjct: 313 agatgtgcctgccggtggcctcgggcgcctcgtagagcaggagcagcgcgtcggcgacgt 372
Query: 399 ccctgacgtcgacgatgtgccaaagcttgtccctcat-tcgatcaggtcctcctttcagg 457
| | |||||||||||||||||| |||||||||||| | ||| ||||| |||||| | |||
Sbjct: 373 cgcggacgtcgacgatgtgccacagcttgtccctcgtctcg-tcagggcctcctctgagg 431
Query: 458 aagtagacgaggaactgacagctcgtgttgagcgtcggctg 498
||||||| ||||||||| | ||||||||||| ||||||||
Sbjct: 432 aagtagatgaggaactggctgctcgtgttgatggtcggctg 472
>gb|BI948507.1|BI948507 HVSMEl0009O08f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0009O08f, mRNA sequence
Length = 1042
Score = 87.7 bits (44), Expect = 8e-016
Identities = 62/68 (91%)
Strand = Plus / Minus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
|||||||||||||| |||||||| |||||| ||||||||||| ||||||||||||||||
Sbjct: 174 ggtcgcggacggtggtgtggacggcgtagccccgggagaggagcagcttgacgagccacg 115
Query: 1035 aggcgatg 1042
| ||||||
Sbjct: 114 atgcgatg 107
>gb|AW983188.3|AW983188 HVSMEg0008J14f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0008J14f, mRNA sequence
Length = 910
Score = 83.8 bits (42), Expect = 1e-014
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
|||||||||||||| ||||||||| |||||| ||||||||||| ||||||||||| ||||
Sbjct: 167 ggtcgcggacggtggcgtggacggcgtagccgcgggagaggagcagcttgacgaggcacg 108
Query: 1035 ag 1036
||
Sbjct: 107 ag 106
>gb|BU980008.1|BU980008 HA18D04r HA Hordeum vulgare subsp. vulgare cDNA clone HA18D04
5-PRIME, mRNA sequence
Length = 459
Score = 83.8 bits (42), Expect = 1e-014
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
|||||||||||||| ||||||||| |||||| ||||||||||| ||||||||||| ||||
Sbjct: 179 ggtcgcggacggtggcgtggacggcgtagccgcgggagaggagcagcttgacgaggcacg 120
Query: 1035 ag 1036
||
Sbjct: 119 ag 118
>gb|CA003151.1|CA003151 HS09J04r HS Hordeum vulgare subsp. vulgare cDNA clone HS09J04
5-PRIME, mRNA sequence
Length = 417
Score = 83.8 bits (42), Expect = 1e-014
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
|||||||||||||| ||||||||| |||||| ||||||||||| ||||||||||| ||||
Sbjct: 137 ggtcgcggacggtggcgtggacggcgtagccgcgggagaggagcagcttgacgaggcacg 78
Query: 1035 ag 1036
||
Sbjct: 77 ag 76
>gb|BI959232.1|BI959232 HVSMEn0018M12f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0018M12f,
mRNA sequence
Length = 681
Score = 81.8 bits (41), Expect = 5e-014
Identities = 56/61 (91%)
Strand = Plus / Minus
Query: 975 ggtcgcggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacg 1034
||||||||||||| ||||||||| |||||| ||||||||||| ||||||||||||||||
Sbjct: 148 ggtcgcggacggtagcgtggacggcgtagccccgggagaggagcagcttgacgagccacg 89
Query: 1035 a 1035
|
Sbjct: 88 a 88
>gb|AL504779.1|AL504779 AL504779 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW06F22V 5', mRNA sequence
Length = 700
Score = 79.8 bits (40), Expect = 2e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 207 cggacggtggcgcggacggtgtagccccggtggaggaggagcttgacgagccaggaggcg 148
Query: 1040 atgt 1043
||||
Sbjct: 147 atgt 144
>gb|BF628107.2|BF628107 HVSMEb0003C11f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0003C11f, mRNA sequence
Length = 495
Score = 79.8 bits (40), Expect = 2e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 178 cggacggtggcgcggacggtgtagccgcggtggaggaggagcttgacgagccaggaggcg 119
Query: 1040 atgt 1043
||||
Sbjct: 118 atgt 115
>gb|BF253936.2|BF253936 HVSMEf0002I16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0002I16f, mRNA sequence
Length = 609
Score = 79.8 bits (40), Expect = 2e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 179 cggacggtggcgcggacggtgtagccgcggtggaggaggagcttgacgagccaggaggcg 120
Query: 1040 atgt 1043
||||
Sbjct: 119 atgt 116
>gb|BF255832.2|BF255832 HVSMEf0007P02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0007P02f, mRNA sequence
Length = 837
Score = 79.8 bits (40), Expect = 2e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 195 cggacggtggcgcggacggtgtagccgcggtggaggaggagcttgacgagccaggaggcg 136
Query: 1040 atgt 1043
||||
Sbjct: 135 atgt 132
>gb|AW982651.2|AW982651 HVSMEg0003N13f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003N13f, mRNA sequence
Length = 1042
Score = 79.8 bits (40), Expect = 2e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 119 cggacggtggcgcggacggtgtagccgcggtggaggaggagcttgacgagccaggaggcg 60
Query: 1040 atgt 1043
||||
Sbjct: 59 atgt 56
>gb|BE196379.3|BE196379 HVSMEh0092C06f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0092C06f, mRNA sequence
Length = 941
Score = 79.8 bits (40), Expect = 2e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 231 cggacggtggcgcggacggtgtagccgcggtggaggaggagcttgacgagccaggaggcg 172
Query: 1040 atgt 1043
||||
Sbjct: 171 atgt 168
>gb|BQ459797.1|BQ459797 HA08A23r HA Hordeum vulgare subsp. vulgare cDNA clone HA08A23
5-PRIME, mRNA sequence
Length = 497
Score = 79.8 bits (40), Expect = 2e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 217 cggacggtggcgcggacggtgtagccccggtggaggaggagcttgacgagccaggaggcg 158
Query: 1040 atgt 1043
||||
Sbjct: 157 atgt 154
>gb|BQ460124.1|BQ460124 HA07C19r HA Hordeum vulgare subsp. vulgare cDNA clone HA07C19
5-PRIME, mRNA sequence
Length = 579
Score = 79.8 bits (40), Expect = 2e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 198 cggacggtggcgcggacggtgtagccccggtggaggaggagcttgacgagccaggaggcg 139
Query: 1040 atgt 1043
||||
Sbjct: 138 atgt 135
>gb|BQ467571.1|BQ467571 HS04D07r HS Hordeum vulgare subsp. vulgare cDNA clone HS04D07
5-PRIME, mRNA sequence
Length = 563
Score = 79.8 bits (40), Expect = 2e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 182 cggacggtggcgcggacggtgtagccccggtggaggaggagcttgacgagccaggaggcg 123
Query: 1040 atgt 1043
||||
Sbjct: 122 atgt 119
>gb|BQ470739.1|BQ470739 HX03O06r HX Hordeum vulgare subsp. vulgare cDNA clone HX03O06
5-PRIME, mRNA sequence
Length = 667
Score = 79.8 bits (40), Expect = 2e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 150 cggacggtggcgcggacggtgtagccccggtggaggaggagcttgacgagccaggaggcg 91
Query: 1040 atgt 1043
||||
Sbjct: 90 atgt 87
>gb|BU973416.1|BU973416 HB24O01r BC Hordeum vulgare subsp. vulgare cDNA clone HB24O01
5-PRIME, mRNA sequence
Length = 478
Score = 79.8 bits (40), Expect = 2e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 100 cggacggtggcgcggacggtgtagccccggtggaggaggagcttgacgagccaggaggcg 41
Query: 1040 atgt 1043
||||
Sbjct: 40 atgt 37
>gb|BU980158.1|BU980158 HA18N13r HA Hordeum vulgare subsp. vulgare cDNA clone HA18N13
5-PRIME, mRNA sequence
Length = 399
Score = 79.8 bits (40), Expect = 2e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 167 cggacggtggcgcggacggtgtagccccggtggaggaggagcttgacgagccaggaggcg 108
Query: 1040 atgt 1043
||||
Sbjct: 107 atgt 104
>gb|BU986380.1|BU986380 HF11K09r HF Hordeum vulgare subsp. vulgare cDNA clone HF11K09
5-PRIME, mRNA sequence
Length = 571
Score = 79.8 bits (40), Expect = 2e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 192 cggacggtggcgcggacggtgtagccccggtggaggaggagcttgacgagccaggaggcg 133
Query: 1040 atgt 1043
||||
Sbjct: 132 atgt 129
>gb|BU986537.1|BU986537 HF12C17r HF Hordeum vulgare subsp. vulgare cDNA clone HF12C17
5-PRIME, mRNA sequence
Length = 683
Score = 79.8 bits (40), Expect = 2e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 166 cggacggtggcgcggacggtgtagccccggtggaggaggagcttgacgagccaggaggcg 107
Query: 1040 atgt 1043
||||
Sbjct: 106 atgt 103
>gb|CA002692.1|CA002692 HS08E02r HS Hordeum vulgare subsp. vulgare cDNA clone HS08E02
5-PRIME, mRNA sequence
Length = 453
Score = 79.8 bits (40), Expect = 2e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 182 cggacggtggcgcggacggtgtagccccggtggaggaggagcttgacgagccaggaggcg 123
Query: 1040 atgt 1043
||||
Sbjct: 122 atgt 119
>gb|CA004617.1|CA004617 HS18C15r HS Hordeum vulgare subsp. vulgare cDNA clone HS18C15
5-PRIME, mRNA sequence
Length = 417
Score = 79.8 bits (40), Expect = 2e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 195 cggacggtggcgcggacggtgtagccccggtggaggaggagcttgacgagccaggaggcg 136
Query: 1040 atgt 1043
||||
Sbjct: 135 atgt 132
>gb|CA020126.1|CA020126 HV14G15r HV Hordeum vulgare subsp. vulgare cDNA clone HV14G15
5-PRIME, mRNA sequence
Length = 568
Score = 79.8 bits (40), Expect = 2e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 212 cggacggtggcgcggacggtgtagccccggtggaggaggagcttgacgagccaggaggcg 153
Query: 1040 atgt 1043
||||
Sbjct: 152 atgt 149
>gb|CA021911.1|CA021911 HZ41I09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ41I09
5-PRIME, mRNA sequence
Length = 414
Score = 79.8 bits (40), Expect = 2e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 125 cggacggtggcgcggacggtgtagccccggtggaggaggagcttgacgagccaggaggcg 66
Query: 1040 atgt 1043
||||
Sbjct: 65 atgt 62
>gb|CA023175.1|CA023175 HZ45H08r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ45H08
5-PRIME, mRNA sequence
Length = 412
Score = 79.8 bits (40), Expect = 2e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 210 cggacggtggcgcggacggtgtagccccggtggaggaggagcttgacgagccaggaggcg 151
Query: 1040 atgt 1043
||||
Sbjct: 150 atgt 147
>gb|CK123698.1|CK123698 BES1824105b24 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B245 5-PRIME, mRNA sequence
Length = 408
Score = 79.8 bits (40), Expect = 2e-013
Identities = 58/64 (90%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 209 cggacggtggcgcggacggtgtagccccggtggaggaggagcttgacgagccaggaggcg 150
Query: 1040 atgt 1043
||||
Sbjct: 149 atgt 146
>gb|BE214986.2|BE214986 HV_CEb0005H03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0005H03f, mRNA sequence
Length = 941
Score = 75.8 bits (38), Expect = 3e-012
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 189 tccatcccagtttcttgagcttgtcggacgtcattggagctgggtgctccatgtcgtaga 248
|||| ||||| |||||||||||||||| |||||| ||||| ||||| |||||||| |||
Sbjct: 449 tccaccccagcttcttgagcttgtcggtcgtcatcggagccgggtgatccatgtcacaga 508
Query: 249 tgctctccttgct 261
|||||| ||||||
Sbjct: 509 tgctctncttgct 521
>gb|AL505150.1|AL505150 AL505150 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07I24V 5', mRNA sequence
Length = 700
Score = 73.8 bits (37), Expect = 1e-011
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||| ||
Sbjct: 191 cggacggtggcgcggacggtgtagccccggtggaggaggagcttgacgagccaggagncg 132
Query: 1040 atgt 1043
||||
Sbjct: 131 atgt 128
>gb|BF259786.2|BF259786 HVSMEf0020E05f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0020E05f, mRNA sequence
Length = 534
Score = 71.9 bits (36), Expect = 5e-011
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||| || ||||||||||||| ||| ||||||||||||||||||||| ||| ||
Sbjct: 206 cggacggtggcgcggacggtgtagccgcggtggaggaggagcttgacgagccaggagtcg 147
Query: 1040 atgt 1043
||||
Sbjct: 146 atgt 143
>gb|BE454559.2|BE454559 HVSMEh0094E03f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0094E03f, mRNA sequence
Length = 894
Score = 71.9 bits (36), Expect = 5e-011
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||||| |||||||||||||| ||| ||||||||||||||||| ||| || |||
Sbjct: 188 cggacggtgccatggacggtgtagccgcggtcgaggaggagcttgacgatccaggacgcg 129
Query: 1040 atgt 1043
||||
Sbjct: 128 atgt 125
>gb|BF262808.2|BF262808 HV_CEa0005A08f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0005A08f, mRNA sequence
Length = 819
Score = 71.9 bits (36), Expect = 5e-011
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||| || |||| |||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 139 cggacggtggcgcggacagtgtagccgcggtggaggaggagcttgacgagccaggaggcg 80
Query: 1040 atgt 1043
||||
Sbjct: 79 atgt 76
>gb|BF265665.2|BF265665 HV_CEa0013A06f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013A06f, mRNA sequence
Length = 770
Score = 71.9 bits (36), Expect = 5e-011
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||||| |||||||||||||| ||| ||||||||||||||||| ||| || |||
Sbjct: 177 cggacggtgccatggacggtgtagccgcggtcgaggaggagcttgacgatccaggacgcg 118
Query: 1040 atgt 1043
||||
Sbjct: 117 atgt 114
>gb|AV909332.1|AV909332 AV909332 K. Sato unpublished cDNA library, cv. Akashinriki vegetative
stage leaves Hordeum vulgare subsp. vulgare cDNA clone
baak12h02 5', mRNA sequence
Length = 145
Score = 71.9 bits (36), Expect = 5e-011
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||||| |||||||||||||| ||| ||||||||||||||||| ||| || |||
Sbjct: 144 cggacggtgccatggacggtgtagccgcggtcgaggaggagcttgacgatccaggacgcg 85
Query: 1040 atgt 1043
||||
Sbjct: 84 atgt 81
>gb|AV913567.1|AV913567 AV913567 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22i12 5', mRNA sequence
Length = 585
Score = 71.9 bits (36), Expect = 5e-011
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||| || |||| |||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 199 cggacggtggcgcggacagtgtagccgcggtggaggaggagcttgacgagccaggaggcg 140
Query: 1040 atgt 1043
||||
Sbjct: 139 atgt 136
>gb|AV926665.1|AV926665 AV926665 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd23e18 5', mRNA sequence
Length = 584
Score = 71.9 bits (36), Expect = 5e-011
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||| || |||| |||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 199 cggacggtggcgcggacagtgtagccgcggtggaggaggagcttgacgagccaggaggcg 140
Query: 1040 atgt 1043
||||
Sbjct: 139 atgt 136
>gb|AV934049.1|AV934049 AV934049 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baaln14 5', mRNA sequence
Length = 611
Score = 71.9 bits (36), Expect = 5e-011
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||||| |||||||||||||| ||| ||||||||||||||||| ||| || |||
Sbjct: 174 cggacggtgccatggacggtgtagccgcggtcgaggaggagcttgacgatccaggacgcg 115
Query: 1040 atgt 1043
||||
Sbjct: 114 atgt 111
>gb|AV934152.1|AV934152 AV934152 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11d04 5', mRNA sequence
Length = 590
Score = 71.9 bits (36), Expect = 5e-011
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||||| |||||||||||||| ||| ||||||||||||||||| ||| || |||
Sbjct: 189 cggacggtgccatggacggtgtagccgcggtcgaggaggagcttgacgatccaggacgcg 130
Query: 1040 atgt 1043
||||
Sbjct: 129 atgt 126
>gb|AV934159.1|AV934159 AV934159 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal11d16 5', mRNA sequence
Length = 339
Score = 71.9 bits (36), Expect = 5e-011
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||||| |||||||||||||| ||| ||||||||||||||||| ||| || |||
Sbjct: 145 cggacggtgccatggacggtgtagccgcggtcgaggaggagcttgacgatccaggacgcg 86
Query: 1040 atgt 1043
||||
Sbjct: 85 atgt 82
>gb|BM816674.1|BM816674 HB01C06_T3.ab1 HB Hordeum vulgare subsp. vulgare cDNA clone
HB01C06_T3.ab1 similar to Aldehyde reductase,Hydrogen
dehydrogenase,Alcohol dehydrogenase,Cinnamyl-alcohol
dehydrogenase,Hydrogenase,Cytochrome-c3
hydrogenase,Cinnamoyl-CoA reductase,Transferred entry:
1.18.99.1,Carbonyl reductase (NADPH),Dihydrokaempferol
4-reductase,, mRNA sequence
Length = 847
Score = 71.9 bits (36), Expect = 5e-011
Identities = 57/64 (89%)
Strand = Plus / Minus
Query: 980 cggacggtgccgtggacggtgtagccacgggagaggaggagcttgacgagccacgaggcg 1039
||||||||| || |||| |||||||| ||| ||||||||||||||||||||| ||||||
Sbjct: 173 cggacggtggcgcggacagtgtagccgcggtggaggaggagcttgacgagccaggaggcg 114
Query: 1040 atgt 1043
||||
Sbjct: 113 atgt 110
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 134,187
Number of Sequences: 312970
Number of extensions: 134187
Number of successful extensions: 38574
Number of sequences better than 0.5: 107
Number of HSP's better than 0.5 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38384
Number of HSP's gapped (non-prelim): 187
length of query: 1201
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1182
effective length of database: 169,188,109
effective search space: 199980344838
effective search space used: 199980344838
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)