BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4679577.2.1
(833 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE559148.1|BE559148 HV_CEb0023K15f Hordeum vulgare seedl... 414 e-114
gb|BE559172.3|BE559172 HV_CEb0023M17f Hordeum vulgare seedl... 254 4e-066
gb|AV931601.1|AV931601 AV931601 K. Sato unpublished cDNA li... 127 6e-028
gb|BJ458220.1|BJ458220 BJ458220 K. Sato unpublished cDNA li... 127 6e-028
gb|CA031549.1|CA031549 HX10F18r HX Hordeum vulgare subsp. v... 127 6e-028
gb|BF260800.3|BF260800 HVSMEf0022P16f Hordeum vulgare seedl... 121 4e-026
gb|BJ458244.1|BJ458244 BJ458244 K. Sato unpublished cDNA li... 113 9e-024
gb|BQ768685.1|BQ768685 EBro08_SQ012_K12_R root, 3 week, dro... 109 1e-022
gb|BE519687.3|BE519687 HV_CEb0018G12f Hordeum vulgare seedl... 103 9e-021
gb|AV926700.1|AV926700 AV926700 K. Sato unpublished cDNA li... 96 2e-018
gb|BF631681.2|BF631681 HVSMEb0016O17f Hordeum vulgare seedl... 90 1e-016
gb|BE214536.1|BE214536 HV_CEb0003L19f Hordeum vulgare seedl... 90 1e-016
gb|BQ768408.1|BQ768408 EBro08_SQ011_K13_R root, 3 week, dro... 86 2e-015
gb|BF621706.2|BF621706 HVSMEa0011P10f Hordeum vulgare seedl... 68 5e-010
gb|BI950473.1|BI950473 HVSMEl0020N22f Hordeum vulgare spike... 68 5e-010
gb|BI953201.1|BI953201 HVSMEm0011K01f Hordeum vulgare green... 68 5e-010
gb|BI954227.1|BI954227 HVSMEm0016L11f Hordeum vulgare green... 68 5e-010
gb|BI955968.1|BI955968 HVSMEm0025D17f Hordeum vulgare green... 68 5e-010
gb|BF064990.1|BF064990 HV_CEb0022F13f Hordeum vulgare seedl... 68 5e-010
gb|BF265978.2|BF265978 HV_CEa0013N09f Hordeum vulgare seedl... 68 5e-010
gb|BE214577.2|BE214577 HV_CEb0003N19f Hordeum vulgare seedl... 68 5e-010
gb|BF065377.2|BF065377 HV_CEb0012E08f Hordeum vulgare seedl... 68 5e-010
gb|BE559387.2|BE559387 HV_CEb0024H02f Hordeum vulgare seedl... 68 5e-010
gb|CA003742.1|CA003742 HS15G18r HS Hordeum vulgare subsp. v... 68 5e-010
gb|CA019311.1|CA019311 HV11J14r HV Hordeum vulgare subsp. v... 68 5e-010
gb|BJ544278.1|BJ544278 BJ544278 K. Sato unpublished cDNA li... 68 5e-010
gb|BJ544690.1|BJ544690 BJ544690 K. Sato unpublished cDNA li... 68 5e-010
gb|BJ544954.1|BJ544954 BJ544954 K. Sato unpublished cDNA li... 68 5e-010
gb|BJ545180.1|BJ545180 BJ545180 K. Sato unpublished cDNA li... 68 5e-010
gb|CB878161.1|CB878161 HP07J01T HP Hordeum vulgare subsp. v... 68 5e-010
emb|X78672.1|HVCHT2B H.vulgare mRNA for chitinase 2b 68 5e-010
gb|BI947443.1|BI947443 HVSMEl0005H24f Hordeum vulgare spike... 64 8e-009
gb|AV924171.1|AV924171 AV924171 K. Sato unpublished cDNA li... 62 3e-008
gb|BJ543978.1|BJ543978 BJ543978 K. Sato unpublished cDNA li... 62 3e-008
gb|BJ544774.1|BJ544774 BJ544774 K. Sato unpublished cDNA li... 62 3e-008
gb|BJ546657.1|BJ546657 BJ546657 K. Sato unpublished cDNA li... 62 3e-008
gb|BI950475.1|BI950475 HVSMEl0020N24f Hordeum vulgare spike... 60 1e-007
gb|AV925874.1|AV925874 AV925874 K. Sato unpublished cDNA li... 60 1e-007
gb|BI955596.1|BI955596 HVSMEm0023L14f Hordeum vulgare green... 58 5e-007
gb|BJ544300.1|BJ544300 BJ544300 K. Sato unpublished cDNA li... 58 5e-007
gb|BJ546437.1|BJ546437 BJ546437 K. Sato unpublished cDNA li... 58 5e-007
emb|AJ276226.1|HVU276226 Hordeum vulgare mRNA for chitinase... 58 5e-007
gb|BE454981.1|BE454981 HVSMEh0095L21f Hordeum vulgare 5-45 ... 54 8e-006
gb|BF628657.2|BF628657 HVSMEb0006P01f Hordeum vulgare seedl... 54 8e-006
gb|BE195290.2|BE195290 HVSMEh0088N04f Hordeum vulgare 5-45 ... 54 8e-006
gb|BG365326.1|BG365326 HVSMEi0002E22f Hordeum vulgare 20 DA... 54 8e-006
gb|BG365536.1|BG365536 HVSMEi0003B22f Hordeum vulgare 20 DA... 54 8e-006
gb|BG366443.1|BG366443 HVSMEi0007B04f Hordeum vulgare 20 DA... 54 8e-006
gb|BG366444.1|BG366444 HVSMEi0007B06f Hordeum vulgare 20 DA... 54 8e-006
gb|BG366514.1|BG366514 HVSMEi0007F02f Hordeum vulgare 20 DA... 54 8e-006
gb|BG368439.1|BG368439 HVSMEi0018M10f Hordeum vulgare 20 DA... 54 8e-006
gb|BG368852.1|BG368852 HVSMEi0020P03f Hordeum vulgare 20 DA... 54 8e-006
gb|BG369819.1|BG369819 HVSMEi0026C13f Hordeum vulgare 20 DA... 54 8e-006
gb|BI946596.1|BI946596 HVSMEl0001A13f Hordeum vulgare spike... 54 8e-006
gb|BI949464.1|BI949464 HVSMEl0014A17f Hordeum vulgare spike... 54 8e-006
gb|BF263615.1|BF263615 HV_CEa0007D10f Hordeum vulgare seedl... 54 8e-006
gb|BE216036.2|BE216036 HV_CEb0009D03f Hordeum vulgare seedl... 54 8e-006
gb|BE216371.2|BE216371 HV_CEb0010F03f Hordeum vulgare seedl... 54 8e-006
gb|BG416746.1|BG416746 HVSMEk0014F08f Hordeum vulgare testa... 54 8e-006
gb|BE193259.3|BE193259 HVSMEh0080F13f Hordeum vulgare 5-45 ... 54 8e-006
gb|BE196066.3|BE196066 HVSMEh0091E09f Hordeum vulgare 5-45 ... 54 8e-006
gb|BE454366.3|BE454366 HVSMEh0093N17f Hordeum vulgare 5-45 ... 54 8e-006
gb|BE455238.3|BE455238 HVSMEh0096L08f Hordeum vulgare 5-45 ... 54 8e-006
gb|BE602672.2|BE602672 HVSMEh0101A21f Hordeum vulgare 5-45 ... 54 8e-006
gb|BE602137.3|BE602137 HVSMEh0102K15f Hordeum vulgare 5-45 ... 54 8e-006
gb|BG365415.2|BG365415 HVSMEi0002J15f Hordeum vulgare 20 DA... 54 8e-006
gb|BG365564.2|BG365564 HVSMEi0003D14f Hordeum vulgare 20 DA... 54 8e-006
gb|BG365634.2|BG365634 HVSMEi0003I02f Hordeum vulgare 20 DA... 54 8e-006
gb|BG365745.2|BG365745 HVSMEi0004A12f Hordeum vulgare 20 DA... 54 8e-006
gb|BG365857.2|BG365857 HVSMEi0004I09f Hordeum vulgare 20 DA... 54 8e-006
gb|BG366294.2|BG366294 HVSMEi0006J18f Hordeum vulgare 20 DA... 54 8e-006
gb|BG366386.2|BG366386 HVSMEi0006N24f Hordeum vulgare 20 DA... 54 8e-006
gb|BG366607.2|BG366607 HVSMEi0007J19f Hordeum vulgare 20 DA... 54 8e-006
gb|BG367660.2|BG367660 HVSMEi0013B21f Hordeum vulgare 20 DA... 54 8e-006
gb|BG368640.2|BG368640 HVSMEi0020A24f Hordeum vulgare 20 DA... 54 8e-006
gb|BG369058.2|BG369058 HVSMEi0021J04f Hordeum vulgare 20 DA... 54 8e-006
gb|BG369253.2|BG369253 HVSMEi0023G17f Hordeum vulgare 20 DA... 54 8e-006
gb|BG369545.2|BG369545 HVSMEi0024N21f Hordeum vulgare 20 DA... 54 8e-006
gb|BG369571.2|BG369571 HVSMEi0024P21f Hordeum vulgare 20 DA... 54 8e-006
gb|BG369588.2|BG369588 HVSMEi0025B12f Hordeum vulgare 20 DA... 54 8e-006
gb|BG414551.2|BG414551 HVSMEk0002N14f Hordeum vulgare testa... 54 8e-006
gb|BJ447651.1|BJ447651 BJ447651 K. Sato unpublished cDNA li... 54 8e-006
gb|BJ455403.1|BJ455403 BJ455403 K. Sato unpublished cDNA li... 54 8e-006
gb|BM441867.2|BM441867 EBed07_SQ001_M10_R endosperm, 28 DPA... 54 8e-006
gb|BI780179.2|BI780179 EBma08_SQ001_K01_R maternal, 28 DPA,... 54 8e-006
gb|BM371530.2|BM371530 EBma08_SQ003_B11_R maternal, 28 DPA,... 54 8e-006
gb|BM371568.2|BM371568 EBma08_SQ003_D15_R maternal, 28 DPA,... 54 8e-006
gb|BM371738.2|BM371738 EBma08_SQ003_M12_R maternal, 28 DPA,... 54 8e-006
gb|BM371743.2|BM371743 EBma08_SQ003_M18_R maternal, 28 DPA,... 54 8e-006
gb|BM371924.2|BM371924 EBma08_SQ004_G15_R maternal, 28 DPA,... 54 8e-006
gb|BQ755243.1|BQ755243 EBed07_SQ002_G06_R endosperm, 28 DPA... 54 8e-006
gb|BQ755873.1|BQ755873 EBed07_SQ003_G24_R endosperm, 28 DPA... 54 8e-006
gb|BQ758640.1|BQ758640 EBma07_SQ002_J07_R maternal, 21 DPA,... 54 8e-006
gb|BQ758652.1|BQ758652 EBma07_SQ002_L09_R maternal, 21 DPA,... 54 8e-006
gb|CA011984.1|CA011984 HT04B14r HT Hordeum vulgare subsp. v... 54 8e-006
gb|CA012410.1|CA012410 HT05F17r HT Hordeum vulgare subsp. v... 54 8e-006
gb|CA014196.1|CA014196 HT10K16r HT Hordeum vulgare subsp. v... 54 8e-006
gb|CA014966.1|CA014966 HT12N24r HT Hordeum vulgare subsp. v... 54 8e-006
gb|CA015187.1|CA015187 HT13I21r HT Hordeum vulgare subsp. v... 54 8e-006
gb|CA018351.1|CA018351 HV08G01r HV Hordeum vulgare subsp. v... 54 8e-006
gb|CA019044.1|CA019044 HV10J02r HV Hordeum vulgare subsp. v... 54 8e-006
gb|CB876220.1|CB876220 HX10K07w HX Hordeum vulgare subsp. v... 54 8e-006
gb|U02287.1|HVU02287 Hordeum vulgare cultivar NK1558 chitin... 54 8e-006
emb|AJ400137.1|HVU400137 Hordeum vulgare subsp. vulgare par... 54 8e-006
gb|BG365987.1|BG365987 HVSMEi0005K09f Hordeum vulgare 20 DA... 52 3e-005
gb|BG368854.1|BG368854 HVSMEi0020P07f Hordeum vulgare 20 DA... 52 3e-005
gb|BF265478.2|BF265478 HV_CEa0012G06f Hordeum vulgare seedl... 52 3e-005
gb|BG301220.2|BG301220 HVSMEb0019P18f Hordeum vulgare seedl... 52 3e-005
gb|BJ448252.1|BJ448252 BJ448252 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ454140.1|BJ454140 BJ454140 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ455971.1|BJ455971 BJ455971 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ461672.1|BJ461672 BJ461672 K. Sato unpublished cDNA li... 52 3e-005
gb|CA019539.1|CA019539 HV12E21r HV Hordeum vulgare subsp. v... 52 3e-005
gb|BF627814.2|BF627814 HVSMEb0005N23f Hordeum vulgare seedl... 50 1e-004
gb|BF259800.2|BF259800 HVSMEf0020E19f Hordeum vulgare seedl... 50 1e-004
gb|BE602375.2|BE602375 HVSMEh0098L01f Hordeum vulgare 5-45 ... 50 1e-004
gb|BG365887.1|BG365887 HVSMEi0004K07f Hordeum vulgare 20 DA... 50 1e-004
gb|BG367072.1|BG367072 HVSMEi0010B13f Hordeum vulgare 20 DA... 50 1e-004
gb|BI949249.1|BI949249 HVSMEl0013A02f Hordeum vulgare spike... 50 1e-004
gb|BI951414.1|BI951414 HVSMEl0025N19f Hordeum vulgare spike... 50 1e-004
gb|BI951463.1|BI951463 HVSMEm0001A11f Hordeum vulgare green... 50 1e-004
gb|BI952917.1|BI952917 HVSMEm0008F23f Hordeum vulgare green... 50 1e-004
gb|BI953910.1|BI953910 HVSMEm0015F08f Hordeum vulgare green... 50 1e-004
gb|BI955638.1|BI955638 HVSMEm0023N21f Hordeum vulgare green... 50 1e-004
gb|BE213990.1|BE213990 HV_CEb0001N13f Hordeum vulgare seedl... 50 1e-004
gb|BE216024.1|BE216024 HV_CEb0009C12f Hordeum vulgare seedl... 50 1e-004
gb|BE558718.1|BE558718 HV_CEb0020C16f Hordeum vulgare seedl... 50 1e-004
gb|BF065067.1|BF065067 HV_CEb0022N01f Hordeum vulgare seedl... 50 1e-004
gb|BF066058.1|BF066058 HV_CEb0014L16f Hordeum vulgare seedl... 50 1e-004
gb|BF265236.1|BF265236 HV_CEa0011O17f Hordeum vulgare seedl... 50 1e-004
gb|BF266125.2|BF266125 HV_CEa0014D24f Hordeum vulgare seedl... 50 1e-004
gb|BE216122.2|BE216122 HV_CEb0009I06f Hordeum vulgare seedl... 50 1e-004
gb|BF065694.2|BF065694 HV_CEb0013H08f Hordeum vulgare seedl... 50 1e-004
gb|BE215473.3|BE215473 HV_CEb0006O09f Hordeum vulgare seedl... 50 1e-004
gb|BF065825.3|BF065825 HV_CEb0014B14f Hordeum vulgare seedl... 50 1e-004
gb|BM444141.1|BM444141 EBem09_SQ004_E15_R embryo, 1 Day ger... 50 1e-004
gb|BI780166.2|BI780166 EBma08_SQ001_J11_R maternal, 28 DPA,... 50 1e-004
emb|X78671.1|HVCHT2A H.vulgare mRNA for chitinase 2a 50 1e-004
gb|BE214283.1|BE214283 HV_CEb0003A01f Hordeum vulgare seedl... 48 5e-004
gb|BE559371.1|BE559371 HV_CEb0024F08f Hordeum vulgare seedl... 48 5e-004
gb|BM443649.2|BM443649 EBem09_SQ001_A19_R embryo, 1 Day ger... 48 5e-004
gb|BM445101.2|BM445101 EBem09_SQ007_G24_R embryo, 1 Day ger... 48 5e-004
gb|BM445279.2|BM445279 EBem09_SQ007_P07_R embryo, 1 Day ger... 48 5e-004
gb|BQ756597.1|BQ756597 EBem09_SQ003_D03_R embryo, 1 Day ger... 48 5e-004
gb|BG368322.1|BG368322 HVSMEi0017L06f Hordeum vulgare 20 DA... 46 0.002
gb|BG415850.1|BG415850 HVSMEk0008C15f Hordeum vulgare testa... 46 0.002
gb|BG366793.2|BG366793 HVSMEi0008F20f Hordeum vulgare 20 DA... 46 0.002
gb|BF262973.2|BF262973 HV_CEa0005H11f Hordeum vulgare seedl... 46 0.002
gb|BM444091.1|BM444091 EBem09_SQ004_C05_R embryo, 1 Day ger... 46 0.002
gb|BM444155.1|BM444155 EBem09_SQ004_F06_R embryo, 1 Day ger... 46 0.002
gb|BM444185.1|BM444185 EBem09_SQ004_G13_R embryo, 1 Day ger... 46 0.002
gb|BQ757284.1|BQ757284 EBem10_SQ003_J08_R embryo, 2 Day ger... 46 0.002
gb|BE195941.2|BE195941 HVSMEh0090O16f Hordeum vulgare 5-45 ... 44 0.007
gb|BE216858.2|BE216858 HV_CEb0011N12f Hordeum vulgare seedl... 42 0.029
gb|BQ765750.1|BQ765750 EBro03_SQ008_F04_R root, 3 week, wat... 42 0.029
gb|AL499683.1|AL499683 AL499683 Hordeum vulgare Barke etiol... 40 0.11
gb|AL500402.1|AL500402 AL500402 Hordeum vulgare Barke etiol... 40 0.11
gb|BF619746.2|BF619746 HVSMEc0009B09f Hordeum vulgare seedl... 40 0.11
gb|BG367233.2|BG367233 HVSMEi0011G09f Hordeum vulgare 20 DA... 40 0.11
gb|AJ461109.1|AJ461109 AJ461109 S00002 Hordeum vulgare subs... 40 0.11
gb|AJ461110.1|AJ461110 AJ461110 S00002 Hordeum vulgare subs... 40 0.11
gb|BM371518.2|BM371518 EBma08_SQ003_A17_R maternal, 28 DPA,... 40 0.11
gb|CB879149.1|CB879149 HP11B19T HP Hordeum vulgare subsp. v... 40 0.11
gb|BF624096.2|BF624096 HVSMEa0009G20f Hordeum vulgare seedl... 38 0.45
gb|BF626132.3|BF626132 HVSMEa0015P16f Hordeum vulgare seedl... 38 0.45
gb|BI952125.1|BI952125 HVSMEm0004L07f Hordeum vulgare green... 38 0.45
gb|BF264498.2|BF264498 HV_CEa0009J09f Hordeum vulgare seedl... 38 0.45
gb|BE214483.2|BE214483 HV_CEb0003J11f Hordeum vulgare seedl... 38 0.45
gb|BI960751.1|BI960751 HVSMEi0021C12f Hordeum vulgare 20 DA... 38 0.45
gb|BF259671.3|BF259671 HVSMEf0019P07f Hordeum vulgare seedl... 38 0.45
gb|BG343451.2|BG343451 HVSMEg0005M20f Hordeum vulgare pre-a... 38 0.45
gb|BE602548.3|BE602548 HVSMEh0099N16f Hordeum vulgare 5-45 ... 38 0.45
gb|BE214365.3|BE214365 HV_CEb0003D21f Hordeum vulgare seedl... 38 0.45
gb|AV908859.1|AV908859 AV908859 K. Sato unpublished cDNA li... 38 0.45
gb|AV908961.1|AV908961 AV908961 K. Sato unpublished cDNA li... 38 0.45
gb|AV909683.1|AV909683 AV909683 K. Sato unpublished cDNA li... 38 0.45
gb|AV910846.1|AV910846 AV910846 K. Sato unpublished cDNA li... 38 0.45
gb|AV911582.1|AV911582 AV911582 K. Sato unpublished cDNA li... 38 0.45
gb|AV928645.1|AV928645 AV928645 K. Sato unpublished cDNA li... 38 0.45
gb|AV929266.1|AV929266 AV929266 K. Sato unpublished cDNA li... 38 0.45
gb|BJ449314.1|BJ449314 BJ449314 K. Sato unpublished cDNA li... 38 0.45
gb|BJ453540.1|BJ453540 BJ453540 K. Sato unpublished cDNA li... 38 0.45
gb|BJ456780.1|BJ456780 BJ456780 K. Sato unpublished cDNA li... 38 0.45
gb|BJ461085.1|BJ461085 BJ461085 K. Sato unpublished cDNA li... 38 0.45
gb|BM369392.2|BM369392 EBem07_SQ003_H07_R embryo, 28 DPA, n... 38 0.45
gb|BM100691.2|BM100691 EBma01_SQ005_P07_R maternal, 4 DPA, ... 38 0.45
gb|BM097184.2|BM097184 EBpi07_SQ002_K21_R pistil, 12 DPA, n... 38 0.45
gb|BQ756669.1|BQ756669 EBem09_SQ003_G14_R embryo, 1 Day ger... 38 0.45
gb|BQ757610.1|BQ757610 EBem10_SQ004_K15_R embryo, 2 Day ger... 38 0.45
gb|BU996389.1|BU996389 HM13H04r HM Hordeum vulgare subsp. v... 38 0.45
gb|CA008850.1|CA008850 HU12F03r HU Hordeum vulgare subsp. v... 38 0.45
gb|BJ544721.1|BJ544721 BJ544721 K. Sato unpublished cDNA li... 38 0.45
gb|BJ545740.1|BJ545740 BJ545740 K. Sato unpublished cDNA li... 38 0.45
gb|BJ546018.1|BJ546018 BJ546018 K. Sato unpublished cDNA li... 38 0.45
gb|BJ546165.1|BJ546165 BJ546165 K. Sato unpublished cDNA li... 38 0.45
gb|BJ546197.1|BJ546197 BJ546197 K. Sato unpublished cDNA li... 38 0.45
gb|BJ546246.1|BJ546246 BJ546246 K. Sato unpublished cDNA li... 38 0.45
gb|BJ546257.1|BJ546257 BJ546257 K. Sato unpublished cDNA li... 38 0.45
gb|CB876675.1|CB876675 HP02A05T HP Hordeum vulgare subsp. v... 38 0.45
gb|CK122898.1|CK122898 BES1824101c14 BES1824 Hordeum vulgar... 38 0.45
>gb|BE559148.1|BE559148 HV_CEb0023K15f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0023K15f, mRNA sequence
Length = 551
Score = 414 bits (209), Expect = e-114
Identities = 390/449 (86%), Gaps = 1/449 (0%)
Strand = Plus / Minus
Query: 227 gccgccttcttcggcaacgccaaccacgagaccataaagttctgctacatcaacgagatc 286
|||||||| |||| | ||| |||||| |||||||||||||||||||||| ||||||||
Sbjct: 550 gccgcctttttcgcccacgtcaaccagaggaccataaagttctgctacatcgacgagatc 491
Query: 287 ga-cgggccgagcaagaactactgcgaccggaacaacacgcagtggccgtgccaggcggg 345
| |||||||||||||||||||||||||| || |||||| ||||||||||| || ||
Sbjct: 490 aaacgggccgagcaagaactactgcgacccgacgaacacggagtggccgtgcgtcgccgg 431
Query: 346 gaaggggtactacggccgcggcccgctgcagatctcctggaacttcaactacgggcccgc 405
|||||| |||||||||||||| |||||||| |||| ||||||| ||||||||| | ||
Sbjct: 430 gaagggctactacggccgcggtccgctgcaattctcgtggaactacaactacggagctgc 371
Query: 406 ggggcagagcatcggcttcgacgggctgggcgaccccgacgcggtggcgcgcagcgccgt 465
||||||||| | |||||||||||||| |||||| |||||||||||||| ||| ||||
Sbjct: 370 agggcagagcctgggcttcgacgggctcaacgacccggacgcggtggcgcggagccccgt 311
Query: 466 gctcgcgttccgctccgcgctctggtactggatgaacaacgtgcacggggccatcgtctc 525
| ||||||| | |||||||||||||||||||||| |||||||| | |||||||||
Sbjct: 310 cttggcgttccaagcggcgctctggtactggatgaacagcgtgcacgacgtcatcgtctc 251
Query: 526 cggccagggcttcggcgccaccatccgggccatcaacggcgcgctcgagtgcgacggcaa 585
||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 250 cggccagggattcggcgccaccatcagggccatcaacggcgcgctcgagtgcaacggcaa 191
Query: 586 gaaccccaactccgtcaacaaccgcgtcgcctactacaagcagttctgccaggatttcgg 645
|||||||| | |||||||| | |||||||||||||||||||||||||||||| | |||||
Sbjct: 190 gaaccccaccgccgtcaacgatcgcgtcgcctactacaagcagttctgccagcagttcgg 131
Query: 646 cgtcgacccgggcaacaacctcacctgct 674
|||||||||||| | || |||||||||||
Sbjct: 130 cgtcgacccggggaccagcctcacctgct 102
>gb|BE559172.3|BE559172 HV_CEb0023M17f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0023M17f, mRNA sequence
Length = 532
Score = 254 bits (128), Expect = 4e-066
Identities = 251/292 (85%)
Strand = Plus / Plus
Query: 23 tcgggcccctgcgacgtgccggagaccaacaacgcgtccgtggccagcatcgtgacgccg 82
|||||||||||| ||||| | |||||||||| ||||||| || |||||| ||||||
Sbjct: 226 tcgggcccctgcactgtgcccgtcaccaacaacgtgtccgtgcccgccatcgtcacgccg 285
Query: 83 gccttcttcgacgcgctcctcgcgcaggccgccgcctcgtgcgaggccaacggcttctac 142
|||||||||| ||||||| || | |||||||||| | |||| ||||| |||||||||
Sbjct: 286 gccttcttcggcgcgctcgtctcccaggccgccgacgactgcgccgccaagggcttctac 345
Query: 143 acccgcgacgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcacc 202
|||||||||||||||||| | || |||| ||||| || ||||| ||||| ||| ||
Sbjct: 346 acccgcgacgccttcctcacggcgctcggcgggtaccccgccttcggacgcactggctcc 405
Query: 203 gtcgacgactccaagcgcgagatcgccgccttcttcggcaacgccaaccacgagaccata 262
| ||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||
Sbjct: 406 gacgacgactccaagcgcgagatcgccgccttcttcgcccacgtcaaccacgagaccata 465
Query: 263 aagttctgctacatcaacgagatcgacgggccgagcaagaactactgcgacc 314
||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 466 aagttctgctacatcgacgagatcaacgggccgagcaagaactactgcgacc 517
>gb|AV931601.1|AV931601 AV931601 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h02 3', mRNA sequence
Length = 633
Score = 127 bits (64), Expect = 6e-028
Identities = 139/164 (84%)
Strand = Plus / Minus
Query: 269 tgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaacacgcag 328
||||||||| | ||||||| |||| |||| |||||||||||||| |||| ||||||||
Sbjct: 605 tgctacatcgaggagatcggcggggcgaggcagaactactgcgacaggaagtacacgcag 546
Query: 329 tggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctggaac 388
||||||||| ||||||||||||||||||| ||||| ||||||||| | | ||||||
Sbjct: 545 tggccgtgcacctcggggaaggggtactacgggcgcgggccgctgcagctgacatggaac 486
Query: 389 ttcaactacgggcccgcggggcagagcatcggcttcgacgggct 432
| |||||||||| | |||||| ||||| |||| |||||||||||
Sbjct: 485 tacaactacggggcggcggggaagagcgtcgggttcgacgggct 442
Score = 48.1 bits (24), Expect = 5e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 631 ctgccaggatttcggcgtcgacccgggcaacaacctcacctgct 674
||||||| | ||||||||||||||||| |||| |||||| ||||
Sbjct: 252 ctgccagcagttcggcgtcgacccggggaacagcctcacttgct 209
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 482 gcgctctggtactggatgaacaacgtg 508
|||||||||| ||||||||||||||||
Sbjct: 392 gcgctctggttctggatgaacaacgtg 366
>gb|BJ458220.1|BJ458220 BJ458220 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak31c19 3', mRNA sequence
Length = 537
Score = 127 bits (64), Expect = 6e-028
Identities = 139/164 (84%)
Strand = Plus / Minus
Query: 269 tgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaacacgcag 328
||||||||| | ||||||| |||| |||| |||||||||||||| |||| ||||||||
Sbjct: 461 tgctacatcgaggagatcggcggggcgaggcagaactactgcgacaggaagtacacgcag 402
Query: 329 tggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctggaac 388
||||||||| ||||||||||||||||||| ||||| ||||||||| | | ||||||
Sbjct: 401 tggccgtgcacctcggggaaggggtactacgggcgcgggccgctgcagctgacatggaac 342
Query: 389 ttcaactacgggcccgcggggcagagcatcggcttcgacgggct 432
| |||||||||| | |||||| ||||| |||| |||||||||||
Sbjct: 341 tacaactacggggcggcggggaagagcgtcgggttcgacgggct 298
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 482 gcgctctggtactggatgaacaacgtg 508
|||||||||| ||||||||||||||||
Sbjct: 248 gcgctctggttctggatgaacaacgtg 222
Score = 44.1 bits (22), Expect = 0.007
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 641 ttcggcgtcgacccgggcaacaacctcacctgct 674
||||||||||||||||| |||| |||||| ||||
Sbjct: 98 ttcggcgtcgacccggggaacagcctcacttgct 65
>gb|CA031549.1|CA031549 HX10F18r HX Hordeum vulgare subsp. vulgare cDNA clone HX10F18
5-PRIME, mRNA sequence
Length = 613
Score = 127 bits (64), Expect = 6e-028
Identities = 139/164 (84%)
Strand = Plus / Plus
Query: 269 tgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaacacgcag 328
||||||||| | ||||||| |||| |||| |||||||||||||| |||| ||||||||
Sbjct: 298 tgctacatcgaggagatcggcggggcgaggcagaactactgcgacaggaagtacacgcag 357
Query: 329 tggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctggaac 388
||||||||| ||||||||||||||||||| ||||| ||||||||| | | ||||||
Sbjct: 358 tggccgtgcacctcggggaaggggtactacgggcgcgggccgctgcagctgacatggaac 417
Query: 389 ttcaactacgggcccgcggggcagagcatcggcttcgacgggct 432
| |||||||||| | |||||| ||||| |||| |||||||||||
Sbjct: 418 tacaactacggggcggcggggaagagcgtcgggttcgacgggct 461
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtg 508
|||||||||| ||||||||||||||||
Sbjct: 511 gcgctctggttctggatgaacaacgtg 537
>gb|BF260800.3|BF260800 HVSMEf0022P16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022P16f, mRNA sequence
Length = 725
Score = 121 bits (61), Expect = 4e-026
Identities = 138/164 (84%)
Strand = Plus / Plus
Query: 269 tgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaacacgcag 328
||||||||| | ||||||| |||| |||| |||||||||||||| |||| ||||||||
Sbjct: 304 tgctacatcgaggagatcggcggggcgaggcagaactactgcgacaggaagtacacgcag 363
Query: 329 tggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctggaac 388
||||||||| ||||||||||||||||||| ||||| ||||||||| | | ||||||
Sbjct: 364 tggccgtgcacctcggggaaggggtactacgggcgcgggccgctgcagctgacatggaac 423
Query: 389 ttcaactacgggcccgcggggcagagcatcggcttcgacgggct 432
| ||||||||| | |||||| ||||| |||| |||||||||||
Sbjct: 424 tacaactacggngcggcggggaagagcgtcgggttcgacgggct 467
Score = 38.2 bits (19), Expect = 0.45
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaa 504
|||||||||| ||||||||||||
Sbjct: 517 gcgctctggttctggatgaacaa 539
>gb|BJ458244.1|BJ458244 BJ458244 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak31e07 3', mRNA sequence
Length = 536
Score = 113 bits (57), Expect = 9e-024
Identities = 128/152 (84%)
Strand = Plus / Minus
Query: 281 gagatcgacgggccgagcaagaactactgcgaccggaacaacacgcagtggccgtgccag 340
||||||| |||| |||| |||||||||||||| |||| |||||||||||||||||
Sbjct: 533 gagatcggcggggcgaggcagaactactgcgacaggaagtacacgcagtggccgtgcacc 474
Query: 341 gcggggaaggggtactacggccgcggcccgctgcagatctcctggaacttcaactacggg 400
|||| |||||||||||||| ||||| ||||||||| | | ||||||| ||||||||||
Sbjct: 473 tcgggnaaggggtactacgggcgcgggccgctgcagctgacatggaactacaactacggg 414
Query: 401 cccgcggggcagagcatcggcttcgacgggct 432
| |||||| ||||| |||| |||||||||||
Sbjct: 413 gcggcggggaagagcgtcgggttcgacgggct 382
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 482 gcgctctggtactggatgaacaacgtg 508
|||||||||| ||||||||||||||||
Sbjct: 332 gcgctctggttctggatgaacaacgtg 306
Score = 44.1 bits (22), Expect = 0.007
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 641 ttcggcgtcgacccgggcaacaacctcacctgct 674
||||||||||||||||| |||| |||||| ||||
Sbjct: 182 ttcggcgtcgacccggggaacagcctcacttgct 149
>gb|BQ768685.1|BQ768685 EBro08_SQ012_K12_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_K12 5', mRNA sequence
Length = 592
Score = 109 bits (55), Expect = 1e-022
Identities = 124/147 (84%)
Strand = Plus / Plus
Query: 269 tgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaacacgcag 328
||||||||| | ||||||| |||| |||| |||||||||||||| |||| ||||||||
Sbjct: 444 tgctacatcgaggagatcggcggggcgaggcagaactactgcgacaggaagtacacgcag 503
Query: 329 tggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctggaac 388
||||||||| ||||||||||||||||||| ||||| ||||||||| | | ||||||
Sbjct: 504 tggccgtgcacctcggggaaggggtactacgggcgcgggccgctgcagctgacatggaac 563
Query: 389 ttcaactacgggcccgcggggcagagc 415
| |||||||||| | |||||| |||||
Sbjct: 564 tacaactacggggcggcggggaagagc 590
>gb|BE519687.3|BE519687 HV_CEb0018G12f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0018G12f, mRNA sequence
Length = 523
Score = 103 bits (52), Expect = 9e-021
Identities = 136/164 (82%)
Strand = Plus / Plus
Query: 269 tgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaacacgcag 328
||||||||| | ||||||| |||| |||| | |||||||||||| |||| ||||||||
Sbjct: 68 tgctacatcgaggagatcggcggggcgaggcataactactgcgacaggaagtacacgcag 127
Query: 329 tggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctggaac 388
||||||||| ||||||||||||||||||| ||||| ||||||||| | | ||||||
Sbjct: 128 tggccgtgcacctcggggaaggggtactacgggcgcgggccgctgcagctgacatggaac 187
Query: 389 ttcaactacgggcccgcggggcagagcatcggcttcgacgggct 432
| ||||||||| | |||||| ||||| |||| | |||||||||
Sbjct: 188 tacaactacggcgcggcggggaagagcgtcgggtacgacgggct 231
Score = 42.1 bits (21), Expect = 0.029
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacg 506
|||||||||| ||||||||||||||
Sbjct: 282 gcgctctggttctggatgaacaacg 306
>gb|AV926700.1|AV926700 AV926700 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd23h02 5', mRNA sequence
Length = 558
Score = 95.6 bits (48), Expect = 2e-018
Identities = 93/108 (86%)
Strand = Plus / Plus
Query: 269 tgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaacacgcag 328
||||||||| | ||||||| |||| |||| |||||||||||||| |||| ||||||||
Sbjct: 437 tgctacatcgaggagatcggcggggcgaggcagaactactgcgacaggaagtacacgcag 496
Query: 329 tggccgtgccaggcggggaaggggtactacggccgcggcccgctgcag 376
||||||||| ||||||||||||||||||| ||||| |||||||||
Sbjct: 497 tggccgtgcacctcggggaaggggtactacgggcgcgggccgctgcag 544
>gb|BF631681.2|BF631681 HVSMEb0016O17f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0016O17f, mRNA sequence
Length = 843
Score = 89.7 bits (45), Expect = 1e-016
Identities = 108/129 (83%)
Strand = Plus / Plus
Query: 269 tgctacatcaacgagatcgacgggccgagcaagaactactgcgaccggaacaacacgcag 328
||||||||| | ||||||| |||| |||| |||||||||||||| |||| ||||||||
Sbjct: 452 tgctacatcgaggagatcggcggggcgaggcagaactactgcgacaggaagtacacgcag 511
Query: 329 tggccgtgccaggcggggaaggggtactacggccgcggcccgctgcagatctcctggaac 388
||||||||| ||||||||||||||||||| ||||| ||| ||||| | | ||||||
Sbjct: 512 tggccgtgcacctcggggaaggggtactacgggcgcgggccgttgcagctgacatggaac 571
Query: 389 ttcaactac 397
| |||||||
Sbjct: 572 tacaactac 580
>gb|BE214536.1|BE214536 HV_CEb0003L19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0003L19f, mRNA sequence
Length = 711
Score = 89.7 bits (45), Expect = 1e-016
Identities = 90/105 (85%)
Strand = Plus / Plus
Query: 205 cgacgactccaagcgcgagatcgccgccttcttcggcaacgccaaccacgagaccataaa 264
|||||||||||||||||||||||||||||| || | | ||| |||||| |||||||| ||
Sbjct: 546 cgacgactccaagcgcgagatcgccgccttatttgcccacgtcaaccaagagaccattaa 605
Query: 265 gttctgctacatcaacgagatcgacgggccgagcaagaactactg 309
||| || |||||| |||||| | | |||||| | |||||||||||
Sbjct: 606 gttgtggtacatccacgagaacaaagggccggggaagaactactg 650
Score = 44.1 bits (22), Expect = 0.007
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 128 gccaacggcttctacacccgcgacgcctt 156
||||| ||||| |||||||||||||||||
Sbjct: 469 gccaagggcttntacacccgcgacgcctt 497
>gb|BQ768408.1|BQ768408 EBro08_SQ011_K13_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ011_K13 5', mRNA sequence
Length = 403
Score = 85.7 bits (43), Expect = 2e-015
Identities = 79/91 (86%)
Strand = Plus / Plus
Query: 342 cggggaaggggtactacggccgcggcccgctgcagatctcctggaacttcaactacgggc 401
||||||||||||||||||| ||||| ||||||||| | | ||||||| ||||||||||
Sbjct: 36 cggggaaggggtactacgggcgcgggccgctgcagctgacatggaactacaactacgggg 95
Query: 402 ccgcggggcagagcatcggcttcgacgggct 432
| |||||| ||||| |||| |||||||||||
Sbjct: 96 cggcggggaagagcgtcgggttcgacgggct 126
Score = 46.1 bits (23), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 482 gcgctctggtactggatgaacaacgtg 508
|||||||||| ||||||||||||||||
Sbjct: 176 gcgctctggttctggatgaacaacgtg 202
>gb|BF621706.2|BF621706 HVSMEa0011P10f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011P10f, mRNA sequence
Length = 789
Score = 67.9 bits (34), Expect = 5e-010
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 148 cgacgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcaccgtcga 207
|||||||||| ||||||||||| | || ||||| |||||| |||||||| || |||
Sbjct: 217 cgacgccttcatcgccgccgccaacaccttcccgggcttcggcaccaccggcagcgccga 276
Query: 208 cgactccaagcgcgagatcgccgccttcttcggc 241
|||| |||||||||| |||||||||||||||||
Sbjct: 277 cgacgtcaagcgcgagctcgccgccttcttcggc 310
>gb|BI950473.1|BI950473 HVSMEl0020N22f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0020N22f, mRNA sequence
Length = 567
Score = 67.9 bits (34), Expect = 5e-010
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 148 cgacgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcaccgtcga 207
|||||||||| ||||||||||| | || ||||| |||||| |||||||| || |||
Sbjct: 211 cgacgccttcatcgccgccgccaacaccttcccgggcttcggcaccaccggcagcgccga 270
Query: 208 cgactccaagcgcgagatcgccgccttcttcggc 241
|||| |||||||||| |||||||||||||||||
Sbjct: 271 cgacgtcaagcgcgagctcgccgccttcttcggc 304
>gb|BI953201.1|BI953201 HVSMEm0011K01f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0011K01f, mRNA sequence
Length = 866
Score = 67.9 bits (34), Expect = 5e-010
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 148 cgacgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcaccgtcga 207
|||||||||| ||||||||||| | || ||||| |||||| |||||||| || |||
Sbjct: 210 cgacgccttcatcgccgccgccaacaccttcccgggcttcggcaccaccggcagcgccga 269
Query: 208 cgactccaagcgcgagatcgccgccttcttcggc 241
|||| |||||||||| |||||||||||||||||
Sbjct: 270 cgacgtcaagcgcgagctcgccgccttcttcggc 303
>gb|BI954227.1|BI954227 HVSMEm0016L11f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0016L11f, mRNA sequence
Length = 645
Score = 67.9 bits (34), Expect = 5e-010
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 148 cgacgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcaccgtcga 207
|||||||||| ||||||||||| | || ||||| |||||| |||||||| || |||
Sbjct: 209 cgacgccttcatcgccgccgccaacaccttcccgggcttcggcaccaccggcagcgccga 268
Query: 208 cgactccaagcgcgagatcgccgccttcttcggc 241
|||| |||||||||| |||||||||||||||||
Sbjct: 269 cgacgtcaagcgcgagctcgccgccttcttcggc 302
>gb|BI955968.1|BI955968 HVSMEm0025D17f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0025D17f, mRNA sequence
Length = 537
Score = 67.9 bits (34), Expect = 5e-010
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 148 cgacgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcaccgtcga 207
|||||||||| ||||||||||| | || ||||| |||||| |||||||| || |||
Sbjct: 215 cgacgccttcatcgccgccgccaacaccttcccgggcttcggcaccaccggcagcgccga 274
Query: 208 cgactccaagcgcgagatcgccgccttcttcggc 241
|||| |||||||||| |||||||||||||||||
Sbjct: 275 cgacgtcaagcgcgagctcgccgccttcttcggc 308
>gb|BF064990.1|BF064990 HV_CEb0022F13f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022F13f, mRNA sequence
Length = 824
Score = 67.9 bits (34), Expect = 5e-010
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 148 cgacgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcaccgtcga 207
|||||||||| ||||||||||| | || ||||| |||||| |||||||| || |||
Sbjct: 231 cgacgccttcatcgccgccgccaacaccttcccgggcttcggcaccaccggcagcgccga 290
Query: 208 cgactccaagcgcgagatcgccgccttcttcggc 241
|||| |||||||||| |||||||||||||||||
Sbjct: 291 cgacgtcaagcgcgagctcgccgccttcttcggc 324
>gb|BF265978.2|BF265978 HV_CEa0013N09f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0013N09f, mRNA sequence
Length = 568
Score = 67.9 bits (34), Expect = 5e-010
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 148 cgacgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcaccgtcga 207
|||||||||| ||||||||||| | || ||||| |||||| |||||||| || |||
Sbjct: 208 cgacgccttcatcgccgccgccaacaccttcccgggcttcggcaccaccggcagcgccga 267
Query: 208 cgactccaagcgcgagatcgccgccttcttcggc 241
|||| |||||||||| |||||||||||||||||
Sbjct: 268 cgacgtcaagcgcgagctcgccgccttcttcggc 301
>gb|BE214577.2|BE214577 HV_CEb0003N19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0003N19f, mRNA sequence
Length = 695
Score = 67.9 bits (34), Expect = 5e-010
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 148 cgacgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcaccgtcga 207
|||||||||| ||||||||||| | || ||||| |||||| |||||||| || |||
Sbjct: 214 cgacgccttcatcgccgccgccaacaccttcccgggcttcggcaccaccggcagcgccga 273
Query: 208 cgactccaagcgcgagatcgccgccttcttcggc 241
|||| |||||||||| |||||||||||||||||
Sbjct: 274 cgacgtcaagcgcgagctcgccgccttcttcggc 307
>gb|BF065377.2|BF065377 HV_CEb0012E08f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0012E08f, mRNA sequence
Length = 573
Score = 67.9 bits (34), Expect = 5e-010
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 148 cgacgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcaccgtcga 207
|||||||||| ||||||||||| | || ||||| |||||| |||||||| || |||
Sbjct: 214 cgacgccttcatcgccgccgccaacaccttcccgggcttcggcaccaccggcagcgccga 273
Query: 208 cgactccaagcgcgagatcgccgccttcttcggc 241
|||| |||||||||| |||||||||||||||||
Sbjct: 274 cgacgtcaagcgcgagctcgccgccttcttcggc 307
>gb|BE559387.2|BE559387 HV_CEb0024H02f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024H02f, mRNA sequence
Length = 938
Score = 67.9 bits (34), Expect = 5e-010
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 148 cgacgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcaccgtcga 207
|||||||||| ||||||||||| | || ||||| |||||| |||||||| || |||
Sbjct: 140 cgacgccttcatcgccgccgccaacaccttcccgggcttcggcaccaccggcagcgccga 199
Query: 208 cgactccaagcgcgagatcgccgccttcttcggc 241
|||| |||||||||| |||||||||||||||||
Sbjct: 200 cgacgtcaagcgcgagctcgccgccttcttcggc 233
>gb|CA003742.1|CA003742 HS15G18r HS Hordeum vulgare subsp. vulgare cDNA clone HS15G18
5-PRIME, mRNA sequence
Length = 482
Score = 67.9 bits (34), Expect = 5e-010
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 148 cgacgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcaccgtcga 207
|||||||||| ||||||||||| | || ||||| |||||| |||||||| || |||
Sbjct: 212 cgacgccttcatcgccgccgccaacaccttcccgggcttcggcaccaccggcagcgccga 271
Query: 208 cgactccaagcgcgagatcgccgccttcttcggc 241
|||| |||||||||| |||||||||||||||||
Sbjct: 272 cgacgtcaagcgcgagctcgccgccttcttcggc 305
>gb|CA019311.1|CA019311 HV11J14r HV Hordeum vulgare subsp. vulgare cDNA clone HV11J14
5-PRIME, mRNA sequence
Length = 470
Score = 67.9 bits (34), Expect = 5e-010
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 148 cgacgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcaccgtcga 207
|||||||||| ||||||||||| | || ||||| |||||| |||||||| || |||
Sbjct: 224 cgacgccttcatcgccgccgccaacaccttcccgggcttcggcaccaccggcagcgccga 283
Query: 208 cgactccaagcgcgagatcgccgccttcttcggc 241
|||| |||||||||| |||||||||||||||||
Sbjct: 284 cgacgtcaagcgcgagctcgccgccttcttcggc 317
>gb|BJ544278.1|BJ544278 BJ544278 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak23h08 5', mRNA sequence
Length = 559
Score = 67.9 bits (34), Expect = 5e-010
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 148 cgacgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcaccgtcga 207
|||||||||| ||||||||||| | || ||||| |||||| |||||||| || |||
Sbjct: 76 cgacgccttcatcgccgccgccaacaccttcccgggcttcggcaccaccggcagcgccga 135
Query: 208 cgactccaagcgcgagatcgccgccttcttcggc 241
|||| |||||||||| |||||||||||||||||
Sbjct: 136 cgacgtcaagcgcgagctcgccgccttcttcggc 169
>gb|BJ544690.1|BJ544690 BJ544690 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak34h22 5', mRNA sequence
Length = 502
Score = 67.9 bits (34), Expect = 5e-010
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 148 cgacgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcaccgtcga 207
|||||||||| ||||||||||| | || ||||| |||||| |||||||| || |||
Sbjct: 73 cgacgccttcatcgccgccgccaacaccttcccgggcttcggcaccaccggcagcgccga 132
Query: 208 cgactccaagcgcgagatcgccgccttcttcggc 241
|||| |||||||||| |||||||||||||||||
Sbjct: 133 cgacgtcaagcgcgagctcgccgccttcttcggc 166
>gb|BJ544954.1|BJ544954 BJ544954 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41e18 5', mRNA sequence
Length = 627
Score = 67.9 bits (34), Expect = 5e-010
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 148 cgacgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcaccgtcga 207
|||||||||| ||||||||||| | || ||||| |||||| |||||||| || |||
Sbjct: 74 cgacgccttcatcgccgccgccaacaccttcccgggcttcggcaccaccggcagcgccga 133
Query: 208 cgactccaagcgcgagatcgccgccttcttcggc 241
|||| |||||||||| |||||||||||||||||
Sbjct: 134 cgacgtcaagcgcgagctcgccgccttcttcggc 167
Score = 38.2 bits (19), Expect = 0.45
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 556 catcaacggcgcgctcgagtgcg 578
||||||||||| |||||||||||
Sbjct: 530 catcaacggcgggctcgagtgcg 552
>gb|BJ545180.1|BJ545180 BJ545180 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak45j13 5', mRNA sequence
Length = 560
Score = 67.9 bits (34), Expect = 5e-010
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 148 cgacgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcaccgtcga 207
|||||||||| ||||||||||| | || ||||| |||||| |||||||| || |||
Sbjct: 82 cgacgccttcatcgccgccgccaacaccttcccgggcttcggcaccaccggcagcgccga 141
Query: 208 cgactccaagcgcgagatcgccgccttcttcggc 241
|||| |||||||||| |||||||||||||||||
Sbjct: 142 cgacgtcaagcgcgagctcgccgccttcttcggc 175
Score = 38.2 bits (19), Expect = 0.45
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 556 catcaacggcgcgctcgagtgcg 578
||||||||||| |||||||||||
Sbjct: 538 catcaacggcgggctcgagtgcg 560
>gb|CB878161.1|CB878161 HP07J01T HP Hordeum vulgare subsp. vulgare cDNA clone HP07J01
5-PRIME, mRNA sequence
Length = 606
Score = 67.9 bits (34), Expect = 5e-010
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 148 cgacgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcaccgtcga 207
|||||||||| ||||||||||| | || ||||| |||||| |||||||| || |||
Sbjct: 230 cgacgccttcatcgccgccgccaacaccttcccgggcttcggcaccaccggcagcgccga 289
Query: 208 cgactccaagcgcgagatcgccgccttcttcggc 241
|||| |||||||||| |||||||||||||||||
Sbjct: 290 cgacgtcaagcgcgagctcgccgccttcttcggc 323
>emb|X78672.1|HVCHT2B H.vulgare mRNA for chitinase 2b
Length = 1013
Score = 67.9 bits (34), Expect = 5e-010
Identities = 79/94 (84%)
Strand = Plus / Plus
Query: 148 cgacgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcaccgtcga 207
|||||||||| ||||||||||| | || ||||| |||||| |||||||| || |||
Sbjct: 214 cgacgccttcatcgccgccgccaacaccttcccgggcttcggcaccaccggcagcgccga 273
Query: 208 cgactccaagcgcgagatcgccgccttcttcggc 241
|||| |||||||||| |||||||||||||||||
Sbjct: 274 cgacgtcaagcgcgagctcgccgccttcttcggc 307
Score = 38.2 bits (19), Expect = 0.45
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 556 catcaacggcgcgctcgagtgcg 578
||||||||||| |||||||||||
Sbjct: 670 catcaacggcgggctcgagtgcg 692
>gb|BI947443.1|BI947443 HVSMEl0005H24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0005H24f, mRNA sequence
Length = 501
Score = 63.9 bits (32), Expect = 8e-009
Identities = 77/92 (83%)
Strand = Plus / Plus
Query: 150 acgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcaccgtcgacg 209
|||||||| ||||||||||| | || ||||| |||||| |||||||| || |||||
Sbjct: 210 acgccttcatcgccgccgccaacaccttcccgggcttcggcaccaccggcagcgccgacg 269
Query: 210 actccaagcgcgagatcgccgccttcttcggc 241
|| |||||||||| |||||||||||||||||
Sbjct: 270 acgtcaagcgcgagctcgccgccttcttcggc 301
>gb|AV924171.1|AV924171 AV924171 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd11j20 5', mRNA sequence
Length = 412
Score = 61.9 bits (31), Expect = 3e-008
Identities = 78/94 (82%)
Strand = Plus / Plus
Query: 148 cgacgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcaccgtcga 207
|||||||||| ||| ||||||| | || ||||| |||||| |||||||| || |||
Sbjct: 319 cgacgccttcatcgncgccgccaacaccttcccggacttcggcaccaccggcagcgccga 378
Query: 208 cgactccaagcgcgagatcgccgccttcttcggc 241
|||| |||||||||| |||||||||||||||||
Sbjct: 379 cgacgtcaagcgcgagctcgccgccttcttcggc 412
>gb|BJ543978.1|BJ543978 BJ543978 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17b08 5', mRNA sequence
Length = 588
Score = 61.9 bits (31), Expect = 3e-008
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 151 cgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcaccgtcgacga 210
||||||| ||||||||||| | || ||||| |||||| |||||||| || ||||||
Sbjct: 2 cgccttcatcgccgccgccaacaccttcccgggcttcggcaccaccggcagcgccgacga 61
Query: 211 ctccaagcgcgagatcgccgccttcttcggc 241
| |||||||||| |||||||||||||||||
Sbjct: 62 cgtcaagcgcgagctcgccgccttcttcggc 92
>gb|BJ544774.1|BJ544774 BJ544774 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak37c18 5', mRNA sequence
Length = 585
Score = 61.9 bits (31), Expect = 3e-008
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 151 cgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcaccgtcgacga 210
||||||| ||||||||||| | || ||||| |||||| |||||||| || ||||||
Sbjct: 2 cgccttcatcgccgccgccaacaccttcccgggcttcggcaccaccggcagcgccgacga 61
Query: 211 ctccaagcgcgagatcgccgccttcttcggc 241
| |||||||||| |||||||||||||||||
Sbjct: 62 cgtcaagcgcgagctcgccgccttcttcggc 92
Score = 38.2 bits (19), Expect = 0.45
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 556 catcaacggcgcgctcgagtgcg 578
||||||||||| |||||||||||
Sbjct: 455 catcaacggcgggctcgagtgcg 477
>gb|BJ546657.1|BJ546657 BJ546657 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak45j13 3', mRNA sequence
Length = 718
Score = 61.9 bits (31), Expect = 3e-008
Identities = 78/94 (82%)
Strand = Plus / Minus
Query: 148 cgacgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcaccgtcga 207
|||||| ||| ||||||||||| | || ||||| |||||| |||||||| || |||
Sbjct: 707 cgacgcnttcatcgccgccgccaacaccttcccgggcttcggcaccaccggcagcgccga 648
Query: 208 cgactccaagcgcgagatcgccgccttcttcggc 241
|||| |||||||||| |||||||||||||||||
Sbjct: 647 cgacgtcaagcgcgagctcgccgccttcttcggc 614
Score = 38.2 bits (19), Expect = 0.45
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 556 catcaacggcgcgctcgagtgcg 578
||||||||||| |||||||||||
Sbjct: 251 catcaacggcgggctcgagtgcg 229
>gb|BI950475.1|BI950475 HVSMEl0020N24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0020N24f, mRNA sequence
Length = 574
Score = 60.0 bits (30), Expect = 1e-007
Identities = 78/94 (82%)
Strand = Plus / Plus
Query: 148 cgacgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcaccgtcga 207
|||||||||| ||| ||||||| | || ||||| |||||| |||||||| || |||
Sbjct: 211 cgacgccttcatcggcgccgccaacaccttcccgggcttcggcaccaccggcagcgccga 270
Query: 208 cgactccaagcgcgagatcgccgccttcttcggc 241
|||| |||||||||| |||||||||||||||||
Sbjct: 271 cgacgtcaagcgcgagctcgccgccttcttcggc 304
>gb|AV925874.1|AV925874 AV925874 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdc21 5', mRNA sequence
Length = 405
Score = 60.0 bits (30), Expect = 1e-007
Identities = 78/94 (82%)
Strand = Plus / Plus
Query: 148 cgacgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcaccgtcga 207
|||||||||| ||| ||||||| | || ||||| |||||| |||||||| || |||
Sbjct: 185 cgacgccttcatcggcgccgccaacaccttcccggacttcggcaccaccggcagcgccga 244
Query: 208 cgactccaagcgcgagatcgccgccttcttcggc 241
|||| |||||||||| |||||||||||||||||
Sbjct: 245 cgacgtcaagcgcgagctcgccgccttcttcggc 278
>gb|BI955596.1|BI955596 HVSMEm0023L14f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0023L14f, mRNA sequence
Length = 665
Score = 58.0 bits (29), Expect = 5e-007
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 193 caccggcaccgtcgacgactccaagcgcgagatcgccgccttcttcggc 241
|||||||| || ||||||| |||||||||| |||||||||||||||||
Sbjct: 184 caccggcagcgccgacgacgtcaagcgcgagctcgccgccttcttcggc 232
>gb|BJ544300.1|BJ544300 BJ544300 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak25a20 5', mRNA sequence
Length = 532
Score = 58.0 bits (29), Expect = 5e-007
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 193 caccggcaccgtcgacgactccaagcgcgagatcgccgccttcttcggc 241
|||||||| || ||||||| |||||||||| |||||||||||||||||
Sbjct: 25 caccggcagcgccgacgacgtcaagcgcgagctcgccgccttcttcggc 73
Score = 38.2 bits (19), Expect = 0.45
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 556 catcaacggcgcgctcgagtgcg 578
||||||||||| |||||||||||
Sbjct: 436 catcaacggcgggctcgagtgcg 458
>gb|BJ546437.1|BJ546437 BJ546437 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41e18 3', mRNA sequence
Length = 766
Score = 58.0 bits (29), Expect = 5e-007
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 193 caccggcaccgtcgacgactccaagcgcgagatcgccgccttcttcggc 241
|||||||| || ||||||| |||||||||| |||||||||||||||||
Sbjct: 734 caccggcagcgccgacgacgtcaagcgcgagctcgccgccttcttcggc 686
Score = 38.2 bits (19), Expect = 0.45
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 556 catcaacggcgcgctcgagtgcg 578
||||||||||| |||||||||||
Sbjct: 323 catcaacggcgggctcgagtgcg 301
>emb|AJ276226.1|HVU276226 Hordeum vulgare mRNA for chitinase II (pathogenesis-related protein
3) (cht2 gene)
Length = 890
Score = 58.0 bits (29), Expect = 5e-007
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 193 caccggcaccgtcgacgactccaagcgcgagatcgccgccttcttcggc 241
|||||||| || ||||||| |||||||||| |||||||||||||||||
Sbjct: 265 caccggcagcgccgacgacgtcaagcgcgagctcgccgccttcttcggc 313
Score = 38.2 bits (19), Expect = 0.45
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 556 catcaacggcgcgctcgagtgcg 578
||||||||||| |||||||||||
Sbjct: 676 catcaacggcgggctcgagtgcg 698
>gb|BE454981.1|BE454981 HVSMEh0095L21f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0095L21f, mRNA sequence
Length = 516
Score = 54.0 bits (27), Expect = 8e-006
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 126 aggccaacggcttctacacccgcgacgccttcctcgccgccgc 168
||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 197 aggccaagggcttctacacctacgacgccttcgtcgccgccgc 239
>gb|BF628657.2|BF628657 HVSMEb0006P01f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0006P01f, mRNA sequence
Length = 713
Score = 54.0 bits (27), Expect = 8e-006
Identities = 75/91 (82%)
Strand = Plus / Plus
Query: 148 cgacgccttcctcgccgccgccggctactacccggcgttcggccgcaccggcaccgtcga 207
|||||||||| ||||||||||| | || |||| |||||| |||||||| || |||
Sbjct: 218 cgacgccttcatcgccgccgccaacacctttccgggcttcggcaccaccggcagcgccga 277
Query: 208 cgactccaagcgcgagatcgccgccttcttc 238
|||| |||||||||| ||||||||||||||
Sbjct: 278 cgacgtcaagcgcgagctcgccgccttcttc 308
>gb|BE195290.2|BE195290 HVSMEh0088N04f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0088N04f, mRNA sequence
Length = 628
Score = 54.0 bits (27), Expect = 8e-006
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 126 aggccaacggcttctacacccgcgacgccttcctcgccgccgc 168
||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 196 aggccaagggcttctacacctacgacgccttcgtcgccgccgc 238
>gb|BG365326.1|BG365326 HVSMEi0002E22f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0002E22f, mRNA sequence
Length = 753
Score = 54.0 bits (27), Expect = 8e-006
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 126 aggccaacggcttctacacccgcgacgccttcctcgccgccgc 168
||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 198 aggccaagggcttctacacctacgacgccttcgtcgccgccgc 240
>gb|BG365536.1|BG365536 HVSMEi0003B22f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0003B22f, mRNA sequence
Length = 805
Score = 54.0 bits (27), Expect = 8e-006
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 126 aggccaacggcttctacacccgcgacgccttcctcgccgccgc 168
||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 109 aggccaagggcttctacacctacgacgccttcgtcgccgccgc 151
>gb|BG366443.1|BG366443 HVSMEi0007B04f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0007B04f, mRNA sequence
Length = 495
Score = 54.0 bits (27), Expect = 8e-006
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 126 aggccaacggcttctacacccgcgacgccttcctcgccgccgc 168
||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 189 aggccaagggcttctacacctacgacgccttcgtcgccgccgc 231
>gb|BG366444.1|BG366444 HVSMEi0007B06f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0007B06f, mRNA sequence
Length = 494
Score = 54.0 bits (27), Expect = 8e-006
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 126 aggccaacggcttctacacccgcgacgccttcctcgccgccgc 168
||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 180 aggccaagggcttctacacctacgacgccttcgtcgccgccgc 222
>gb|BG366514.1|BG366514 HVSMEi0007F02f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0007F02f, mRNA sequence
Length = 494
Score = 54.0 bits (27), Expect = 8e-006
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 126 aggccaacggcttctacacccgcgacgccttcctcgccgccgc 168
||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 192 aggccaagggcttctacacctacgacgccttcgtcgccgccgc 234
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 173,390
Number of Sequences: 312970
Number of extensions: 173390
Number of successful extensions: 50244
Number of sequences better than 0.5: 200
Number of HSP's better than 0.5 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49794
Number of HSP's gapped (non-prelim): 414
length of query: 833
length of database: 175,134,539
effective HSP length: 19
effective length of query: 814
effective length of database: 169,188,109
effective search space: 137719120726
effective search space used: 137719120726
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)