BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4580194.2.1
(542 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ462939.1|BQ462939 HI02H22r HI Hordeum vulgare subsp. v... 361 2e-098
gb|BQ469970.1|BQ469970 HX01G08T HX Hordeum vulgare subsp. v... 353 4e-096
gb|BF623654.2|BF623654 HVSMEa0003G14f Hordeum vulgare seedl... 349 6e-095
gb|BI958161.1|BI958161 HVSMEn0013L01f Hordeum vulgare rachi... 268 2e-070
gb|BF621457.2|BF621457 HVSMEa0011A19f Hordeum vulgare seedl... 232 1e-059
gb|BG310318.1|BG310318 HVSMEc0017K01f Hordeum vulgare seedl... 194 2e-048
gb|BU983423.1|BU983423 HA29L02r HA Hordeum vulgare subsp. v... 194 2e-048
gb|CA029988.1|CA029988 HX05M10r HX Hordeum vulgare subsp. v... 194 2e-048
gb|CA031982.1|CA031982 HX11K19r HX Hordeum vulgare subsp. v... 194 2e-048
gb|CK122262.1|CK122262 BES1824102j21 BES1824 Hordeum vulgar... 194 2e-048
gb|BQ765072.1|BQ765072 EBca01_SQ005_P15_R carpel, pre-anthe... 178 1e-043
gb|BM097182.2|BM097182 EBpi07_SQ002_K17_R pistil, 12 DPA, n... 163 7e-039
gb|BI958231.1|BI958231 HVSMEn0013P22f Hordeum vulgare rachi... 125 2e-027
gb|BI956079.1|BI956079 HVSMEm0025J14f Hordeum vulgare green... 123 6e-027
gb|BI960422.1|BI960422 HVSMEn0024I18f Hordeum vulgare rachi... 111 2e-023
gb|AW982890.1|AW982890 HVSMEg0004H18f Hordeum vulgare pre-a... 107 4e-022
gb|BE215083.3|BE215083 HV_CEb0005M01f Hordeum vulgare seedl... 88 3e-016
gb|BQ763632.1|BQ763632 EBro03_SQ005_B03_R root, 3 week, wat... 62 2e-008
gb|BQ764706.1|BQ764706 EBca01_SQ004_L18_R carpel, pre-anthe... 56 1e-006
gb|BI958037.1|BI958037 HVSMEn0013B04f Hordeum vulgare rachi... 48 3e-004
gb|BI959229.1|BI959229 HVSMEn0018M06f Hordeum vulgare rachi... 40 0.073
>gb|BQ462939.1|BQ462939 HI02H22r HI Hordeum vulgare subsp. vulgare cDNA clone HI02H22
5-PRIME, mRNA sequence
Length = 573
Score = 361 bits (182), Expect = 2e-098
Identities = 278/310 (89%)
Strand = Plus / Plus
Query: 233 ggcggcacgattgcgctggtgctcacggcggggacgtggaaggccaagataaagaagtcg 292
||||||||| | |||||| | || ||||||||||||||||||| ||| | ||| |||||
Sbjct: 72 ggcggcacgctggcgctgatcctgacggcggggacgtggaaggtgaagctcaaggagtcg 131
Query: 293 caggagaagatctgtaacaaggggtgggagtgctcggggagcaagtactgctgcaacgac 352
||||||||| | || |||||||||||||||||||| |||| |||||||||||||||| |
Sbjct: 132 caggagaaggtgtgcaacaaggggtgggagtgctccgggaccaagtactgctgcaaccag 191
Query: 353 accatcaccgacttcttcaaggtgtaccagttcgagaacctcttcgccaagcgcaacacc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 192 accatcaccgacttcttcaaggtgtaccagttcgagaacctcttcgccaagcgcaacttc 251
Query: 413 cccgtcgcgcacgccgtcgggttctgggactaccaggccttcatcaccgccgcggccctc 472
|||||||| | |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 252 cccgtcgccaaggccgtcggcttctgggactaccaggccttcatcaccgccgcctccctc 311
Query: 473 ttcgagccccaggggttctgcaccaccggcggcaagcagatgcagatgatggagctctgc 532
|||||| |||||| ||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 312 ttcgagaaccagggcttctgcaccaccggcggcatcgacatgcagatgatggagctctgc 371
Query: 533 gccttcctcg 542
||||||||||
Sbjct: 372 gccttcctcg 381
Score = 50.1 bits (25), Expect = 8e-005
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 162 agatgaagcggaagacgcggaacaagatc 190
||||||||||||||||| |||||||||||
Sbjct: 1 agatgaagcggaagacgaggaacaagatc 29
>gb|BQ469970.1|BQ469970 HX01G08T HX Hordeum vulgare subsp. vulgare cDNA clone HX01G08
5-PRIME, mRNA sequence
Length = 468
Score = 353 bits (178), Expect = 4e-096
Identities = 277/310 (89%)
Strand = Plus / Plus
Query: 233 ggcggcacgattgcgctggtgctcacggcggggacgtggaaggccaagataaagaagtcg 292
||||||||| | |||||| | || ||||||||||||||||||| ||| | ||| |||||
Sbjct: 73 ggcggcacgctggcgctgatcctgacggcggggacgtggaaggtgaagctcaaggagtcg 132
Query: 293 caggagaagatctgtaacaaggggtgggagtgctcggggagcaagtactgctgcaacgac 352
||||||||| || |||||||||||||||||||| |||| |||||||||||||||| |
Sbjct: 133 caggagaaggcgtgcaacaaggggtgggagtgctccgggaccaagtactgctgcaaccag 192
Query: 353 accatcaccgacttcttcaaggtgtaccagttcgagaacctcttcgccaagcgcaacacc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 193 accatcaccgacttcttcaaggtgtaccagttcgagaacctcttcgccaagcgcaacttc 252
Query: 413 cccgtcgcgcacgccgtcgggttctgggactaccaggccttcatcaccgccgcggccctc 472
|||||||| | |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 253 cccgtcgccaaggccgtcggcttctgggactaccaggccttcatcaccgccgcctccctc 312
Query: 473 ttcgagccccaggggttctgcaccaccggcggcaagcagatgcagatgatggagctctgc 532
|||||| |||||| ||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 313 ttcgagaaccagggcttctgcaccaccggcggcatcgacatgcagatgatggagctctgc 372
Query: 533 gccttcctcg 542
||||||||||
Sbjct: 373 gccttcctcg 382
>gb|BF623654.2|BF623654 HVSMEa0003G14f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0003G14f, mRNA sequence
Length = 482
Score = 349 bits (176), Expect = 6e-095
Identities = 275/308 (89%)
Strand = Plus / Plus
Query: 233 ggcggcacgattgcgctggtgctcacggcggggacgtggaaggccaagataaagaagtcg 292
||||||||| | |||||| | || ||||||||||||||||||| ||| | ||| |||||
Sbjct: 62 ggcggcacgctggcgctgatcctgacggcggggacgtggaaggtgaagctcaaggagtcg 121
Query: 293 caggagaagatctgtaacaaggggtgggagtgctcggggagcaagtactgctgcaacgac 352
|| |||||| | || |||||||||||||||||||| |||| |||||||||||||||| |
Sbjct: 122 cacgagaaggtgtgcaacaaggggtgggagtgctccgggaccaagtactgctgcaaccag 181
Query: 353 accatcaccgacttcttcaaggtgtaccagttcgagaacctcttcgccaagcgcaacacc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 182 accatcaccgacttcttcaaggtgtaccagttcgagaacctcttcgccaagcgcaacttc 241
Query: 413 cccgtcgcgcacgccgtcgggttctgggactaccaggccttcatcaccgccgcggccctc 472
|||||||| | |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 242 cccgtcgccaaggccgtcggcttctgggactaccaggccttcatcaccgccgcctccctc 301
Query: 473 ttcgagccccaggggttctgcaccaccggcggcaagcagatgcagatgatggagctctgc 532
|||||| |||||| ||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 302 ttcgagaaccagggcttctgcaccaccggcggcatcgacatgcagatgatggagctctgc 361
Query: 533 gccttcct 540
||||||||
Sbjct: 362 gccttcct 369
>gb|BI958161.1|BI958161 HVSMEn0013L01f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0013L01f, mRNA sequence
Length = 933
Score = 268 bits (135), Expect = 2e-070
Identities = 196/215 (91%), Gaps = 1/215 (0%)
Strand = Plus / Plus
Query: 329 gggagcaagtactgctgcaacgacaccatcaccgacttcttcaaggtgtaccagtt-cga 387
|||| |||||||||||||||| | |||||||||||||||||||||||||||||||| |||
Sbjct: 3 gggaccaagtactgctgcaaccagaccatcaccgacttcttcaaggtgtaccagttgcga 62
Query: 388 gaacctcttcgccaagcgcaacacccccgtcgcgcacgccgtcgggttctgggactacca 447
|||||||||||||||||||||| ||||||||| | |||||||| ||||||||||||||
Sbjct: 63 gaacctcttcgccaagcgcaacttccccgtcgccaaggccgtcggcttctgggactacca 122
Query: 448 ggccttcatcaccgccgcggccctcttcgagccccaggggttctgcaccaccggcggcaa 507
|||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||
Sbjct: 123 ggccttcatcaccgccgcctccctcttcgagaaccagggcttctgcaccaccggcggcat 182
Query: 508 gcagatgcagatgatggagctctgcgccttcctcg 542
| |||||||||||||||||||||||||||||||
Sbjct: 183 cgacatgcagatgatggagctctgcgccttcctcg 217
>gb|BF621457.2|BF621457 HVSMEa0011A19f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011A19f, mRNA sequence
Length = 842
Score = 232 bits (117), Expect = 1e-059
Identities = 195/221 (88%)
Strand = Plus / Plus
Query: 233 ggcggcacgattgcgctggtgctcacggcggggacgtggaaggccaagataaagaagtcg 292
||||||||| | |||||| | || ||||||||||||||||||| ||| | ||| |||||
Sbjct: 263 ggcggcacgctggcgctgatcctgacggcggggacgtggaaggtgaagctcaaggagtcg 322
Query: 293 caggagaagatctgtaacaaggggtgggagtgctcggggagcaagtactgctgcaacgac 352
||||||||| | || |||||||||||||||||||| |||| |||||||||||||||| |
Sbjct: 323 caggagaaggtgtgcaacaaggggtgggagtgctccgggaccaagtactgctgcaaccag 382
Query: 353 accatcaccgacttcttcaaggtgtaccagttcgagaacctcttcgccaagcgcaacacc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 383 accatcaccgacttcttcaaggtgtaccagttcgagaacctcttcgccaagcgcaacttc 442
Query: 413 cccgtcgcgcacgccgtcgggttctgggactaccaggcctt 453
|||||||| | | ||| || | ||||||||||||||||||
Sbjct: 443 cccgtcgccaaggtcgttggctactgggactaccaggcctt 483
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 159 agaagatgaagcggaagacgcggaacaagatc 190
|||||||||||||||||||| |||||||||||
Sbjct: 189 agaagatgaagcggaagacgaggaacaagatc 220
Score = 50.1 bits (25), Expect = 8e-005
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 512 atgcagatgatggagctctgcgccttcct 540
||||||||||||||||| |||||||||||
Sbjct: 540 atgcagatgatggagctttgcgccttcct 568
>gb|BG310318.1|BG310318 HVSMEc0017K01f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0017K01f, mRNA sequence
Length = 805
Score = 194 bits (98), Expect = 2e-048
Identities = 200/234 (85%)
Strand = Plus / Plus
Query: 309 acaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttct 368
||||||||||||||||| || |||| || |||||||||||| ||||||||||||| ||
Sbjct: 170 acaaggggtgggagtgcagcggcagcaggttctgctgcaacgagaccatcaccgactact 229
Query: 369 tcaaggtgtaccagttcgagaacctcttcgccaagcgcaacacccccgtcgcgcacgccg 428
|||||| |||||||||||| | ||||||||| ||||||||| | || |||| |||||||
Sbjct: 230 tcaaggcctaccagttcgaggagctcttcgcccagcgcaacaactccctcgcccacgccg 289
Query: 429 tcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccaggggt 488
||| |||||| |||||||||||||||||||||||||| ||||||||||||| | ||||
Sbjct: 290 ccggcttctggaactaccaggccttcatcaccgccgcgtccctcttcgagcctcgcgggt 349
Query: 489 tctgcaccaccggcggcaagcagatgcagatgatggagctctgcgccttcctcg 542
|| ||||||||||||||| | ||||| |||| |||| || |||||||||||
Sbjct: 350 tcggcaccaccggcggcagggagatgagcatgaaggaggtcgccgccttcctcg 403
>gb|BU983423.1|BU983423 HA29L02r HA Hordeum vulgare subsp. vulgare cDNA clone HA29L02
5-PRIME, mRNA sequence
Length = 559
Score = 194 bits (98), Expect = 2e-048
Identities = 200/234 (85%)
Strand = Plus / Plus
Query: 309 acaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttct 368
||||||||||||||||| || |||| || |||||||||||| ||||||||||||| ||
Sbjct: 190 acaaggggtgggagtgcagcggcagcaggttctgctgcaacgagaccatcaccgactact 249
Query: 369 tcaaggtgtaccagttcgagaacctcttcgccaagcgcaacacccccgtcgcgcacgccg 428
|||||| |||||||||||| | ||||||||| ||||||||| | || |||| |||||||
Sbjct: 250 tcaaggcctaccagttcgaggagctcttcgcccagcgcaacaactccctcgcccacgccg 309
Query: 429 tcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccaggggt 488
||| |||||| |||||||||||||||||||||||||| ||||||||||||| | ||||
Sbjct: 310 ccggcttctggaactaccaggccttcatcaccgccgcgtccctcttcgagcctcgcgggt 369
Query: 489 tctgcaccaccggcggcaagcagatgcagatgatggagctctgcgccttcctcg 542
|| ||||||||||||||| | ||||| |||| |||| || |||||||||||
Sbjct: 370 tcggcaccaccggcggcagggagatgagcatgaaggaggtcgccgccttcctcg 423
>gb|CA029988.1|CA029988 HX05M10r HX Hordeum vulgare subsp. vulgare cDNA clone HX05M10
5-PRIME, mRNA sequence
Length = 658
Score = 194 bits (98), Expect = 2e-048
Identities = 200/234 (85%)
Strand = Plus / Plus
Query: 309 acaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttct 368
||||||||||||||||| || |||| || |||||||||||| ||||||||||||| ||
Sbjct: 200 acaaggggtgggagtgcagcggcagcaggttctgctgcaacgagaccatcaccgactact 259
Query: 369 tcaaggtgtaccagttcgagaacctcttcgccaagcgcaacacccccgtcgcgcacgccg 428
|||||| |||||||||||| | ||||||||| ||||||||| | || |||| |||||||
Sbjct: 260 tcaaggcctaccagttcgaggagctcttcgcccagcgcaacaactccctcgcccacgccg 319
Query: 429 tcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccaggggt 488
||| |||||| |||||||||||||||||||||||||| ||||||||||||| | ||||
Sbjct: 320 ccggcttctggaactaccaggccttcatcaccgccgcgtccctcttcgagcctcgcgggt 379
Query: 489 tctgcaccaccggcggcaagcagatgcagatgatggagctctgcgccttcctcg 542
|| ||||||||||||||| | ||||| |||| |||| || |||||||||||
Sbjct: 380 tcggcaccaccggcggcagggagatgagcatgaaggaggtcgccgccttcctcg 433
>gb|CA031982.1|CA031982 HX11K19r HX Hordeum vulgare subsp. vulgare cDNA clone HX11K19
5-PRIME, mRNA sequence
Length = 641
Score = 194 bits (98), Expect = 2e-048
Identities = 200/234 (85%)
Strand = Plus / Plus
Query: 309 acaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttct 368
||||||||||||||||| || |||| || |||||||||||| ||||||||||||| ||
Sbjct: 140 acaaggggtgggagtgcagcggcagcaggttctgctgcaacgagaccatcaccgactact 199
Query: 369 tcaaggtgtaccagttcgagaacctcttcgccaagcgcaacacccccgtcgcgcacgccg 428
|||||| |||||||||||| | ||||||||| ||||||||| | || |||| |||||||
Sbjct: 200 tcaaggcctaccagttcgaggagctcttcgcccagcgcaacaactccctcgcccacgccg 259
Query: 429 tcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccaggggt 488
||| |||||| |||||||||||||||||||||||||| ||||||||||||| | ||||
Sbjct: 260 ccggcttctggaactaccaggccttcatcaccgccgcgtccctcttcgagcctcgcgggt 319
Query: 489 tctgcaccaccggcggcaagcagatgcagatgatggagctctgcgccttcctcg 542
|| ||||||||||||||| | ||||| |||| |||| || |||||||||||
Sbjct: 320 tcggcaccaccggcggcagggagatgagcatgaaggaggtcgccgccttcctcg 373
>gb|CK122262.1|CK122262 BES1824102j21 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010J212 5-PRIME, mRNA sequence
Length = 803
Score = 194 bits (98), Expect = 2e-048
Identities = 200/234 (85%)
Strand = Plus / Plus
Query: 309 acaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttct 368
||||||||||||||||| || |||| || |||||||||||| ||||||||||||| ||
Sbjct: 184 acaaggggtgggagtgcagcggcagcaggttctgctgcaacgagaccatcaccgactact 243
Query: 369 tcaaggtgtaccagttcgagaacctcttcgccaagcgcaacacccccgtcgcgcacgccg 428
|||||| |||||||||||| | ||||||||| ||||||||| | || |||| |||||||
Sbjct: 244 tcaaggcctaccagttcgaggagctcttcgcccagcgcaacaactccctcgcccacgccg 303
Query: 429 tcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccaggggt 488
||| |||||| |||||||||||||||||||||||||| ||||||||||||| | ||||
Sbjct: 304 ccggcttctggaactaccaggccttcatcaccgccgcgtccctcttcgagcctcgcgggt 363
Query: 489 tctgcaccaccggcggcaagcagatgcagatgatggagctctgcgccttcctcg 542
|| ||||||||||||||| | ||||| |||| |||| || |||||||||||
Sbjct: 364 tcggcaccaccggcggcagggagatgagcatgaaggaggtcgccgccttcctcg 417
>gb|BQ765072.1|BQ765072 EBca01_SQ005_P15_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ005_P15 5', mRNA sequence
Length = 655
Score = 178 bits (90), Expect = 1e-043
Identities = 199/234 (85%), Gaps = 1/234 (0%)
Strand = Plus / Plus
Query: 309 acaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttct 368
||||||||||||||||| || |||| || |||||||||||| ||||||||||||| ||
Sbjct: 221 acaaggggtgggagtgcagcggcagcaggttctgctgcaacgagaccatcaccgactact 280
Query: 369 tcaaggtgtaccagttcgagaacctcttcgccaagcgcaacacccccgtcgcgcacgccg 428
|||||| |||||||||||| | ||||||||| ||||||||| | || |||| |||||||
Sbjct: 281 tcaaggcctaccagttcgaggagctcttcgcccagcgcaacaactccctcgcccacgccg 340
Query: 429 tcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccaggggt 488
||| |||||| |||||||||||||||||||||||||| |||||||||| || | ||||
Sbjct: 341 ccggcttctggaactaccaggccttcatcaccgccgcgtccctcttcga-cctcgcgggt 399
Query: 489 tctgcaccaccggcggcaagcagatgcagatgatggagctctgcgccttcctcg 542
|| ||||||||||||||| | ||||| |||| |||| || |||||||||||
Sbjct: 400 tcggcaccaccggcggcagggagatgagcatgaaggaggtcgccgccttcctcg 453
>gb|BM097182.2|BM097182 EBpi07_SQ002_K17_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ002_K17 5', mRNA sequence
Length = 339
Score = 163 bits (82), Expect = 7e-039
Identities = 131/146 (89%), Gaps = 1/146 (0%)
Strand = Plus / Plus
Query: 398 gccaagcgcaacacccccgtcgcgcacgccgtcgggttctgggactaccaggccttcatc 457
|||||||||||| ||||||||| | |||||||| ||||||||||||||||||||||||
Sbjct: 1 gccaagcgcaacttccccgtcgccaaggccgtcggcttctgggactaccaggccttcatc 60
Query: 458 accgccgcggccctcttcgagccccagggg-ttctgcaccaccggcggcaagcagatgca 516
|||||||| ||||||||||| ||||||| ||||||||||||||||||| | |||||
Sbjct: 61 accgccgcctccctcttcgagaaccaggggcttctgcaccaccggcggcatcgacatgca 120
Query: 517 gatgatggagctctgcgccttcctcg 542
||||||||||||||||||||||||||
Sbjct: 121 gatgatggagctctgcgccttcctcg 146
>gb|BI958231.1|BI958231 HVSMEn0013P22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0013P22f, mRNA sequence
Length = 914
Score = 125 bits (63), Expect = 2e-027
Identities = 97/107 (90%), Gaps = 1/107 (0%)
Strand = Plus / Plus
Query: 437 tgggactaccaggccttcat-caccgccgcggccctcttcgagccccaggggttctgcac 495
|||||||||||||||||||| ||||||||| ||||||||||| |||||| ||||||||
Sbjct: 1 tgggactaccaggccttcatgcaccgccgcctccctcttcgagaaccagggcttctgcac 60
Query: 496 caccggcggcaagcagatgcagatgatggagctctgcgccttcctcg 542
||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 61 caccggcggcatcgacatgcagatgatggagctctgcgccttcctcg 107
>gb|BI956079.1|BI956079 HVSMEm0025J14f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0025J14f, mRNA sequence
Length = 645
Score = 123 bits (62), Expect = 6e-027
Identities = 97/109 (88%)
Strand = Plus / Plus
Query: 434 ttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccaggggttctgc 493
||||| |||||||| |||||||||||||||| ||||||||||| |||||| ||||||
Sbjct: 32 ttctgagactaccantccttcatcaccgccgcctccctcttcgagaaccagggcttctgc 91
Query: 494 accaccggcggcaagcagatgcagatgatggagctctgcgccttcctcg 542
||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 92 accaccggcggcatcgacatgcagatgatggagctctgcgccttcctcg 140
>gb|BI960422.1|BI960422 HVSMEn0024I18f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024I18f, mRNA sequence
Length = 683
Score = 111 bits (56), Expect = 2e-023
Identities = 100/112 (89%), Gaps = 2/112 (1%)
Strand = Plus / Plus
Query: 433 gttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccaggg-gttct 491
|||||||||| |||||||||||||||||||| ||||||||||| |||||| |||||
Sbjct: 16 gttctgggacgggcaggccttcatcaccgccgcctccctcttcgagaaccagggcgttct 75
Query: 492 gcaccaccggcggcaagc-agatgcagatgatggagctctgcgccttcctcg 542
|||||||||||||| | | | |||||||||||||||||||||||||||||||
Sbjct: 76 gcaccaccggcggcgatcgacatgcagatgatggagctctgcgccttcctcg 127
>gb|AW982890.1|AW982890 HVSMEg0004H18f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0004H18f, mRNA sequence
Length = 955
Score = 107 bits (54), Expect = 4e-022
Identities = 159/194 (81%)
Strand = Plus / Plus
Query: 309 acaaggggtgggagtgctcggggagcaagtactgctgcaacgacaccatcaccgacttct 368
||||||||||||||||| | | |||| || |||||||||||| ||||||||||||| ||
Sbjct: 128 acaaggggtgggagtgcacccgcagcaggttctgctgcaacgaaaccatcaccgactact 187
Query: 369 tcaaggtgtaccagttcgagaacctcttcgccaagcgcaacacccccgtcgcgcacgccg 428
|||||| ||||| |||||| | |||||| | ||||||||| | | | || ||||| |
Sbjct: 188 tcaaggcctaccaattcgaggagctcttcttccagcgcaacaacttcctagcccacgcag 247
Query: 429 tcgggttctgggactaccaggccttcatcaccgccgcggccctcttcgagccccaggggt 488
||| |||||| | ||||||||||||||||||| || | |||||||||||| | ||||
Sbjct: 248 ccggcttctggaaataccaggccttcatcaccgacgagtgcctcttcgagcctcgcgggt 307
Query: 489 tctgcaccaccggc 502
|| |||||||||||
Sbjct: 308 tcggcaccaccggc 321
>gb|BE215083.3|BE215083 HV_CEb0005M01f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0005M01f, mRNA sequence
Length = 616
Score = 87.7 bits (44), Expect = 3e-016
Identities = 149/179 (83%), Gaps = 4/179 (2%)
Strand = Plus / Plus
Query: 233 ggcggcacgattgcgctggtgctcacggcggggacgtggaaggccaagataaagaagtcg 292
||||||||| | |||||| | || ||||||||||||||||||| ||| | ||| |||||
Sbjct: 365 ggcggcacgctggcgctgatcctgacggcggggacgtggaaggtgaagctcaaggagtcg 424
Query: 293 caggagaagatctgtaacaa-ggggtgggagtgctcggggagcaagtactgctgcaacga 351
|| |||||| | || ||||| ||||||||||||| |||| ||||||||| ||| || |
Sbjct: 425 catgagaaggtgtgcaacaagggggtgggagtgcctcgggaccaagtactggtgc-acca 483
Query: 352 caccatcacc-gacttcttcaaggtgtaccagttcgagaacctcttcgccaagcgcaac 409
||||| ||| |||||||||| |||| ||||| ||||||||||||||| ||| ||||||
Sbjct: 484 gaccattaccggacttcttcagggtg-accagntcgagaacctcttcggcaaacgcaac 541
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 159 agaagatgaagcggaagacgcggaacaagatc 190
|||||||||||||||||||| |||||||||||
Sbjct: 291 agaagatgaagcggaagacgaggaacaagatc 322
>gb|BQ763632.1|BQ763632 EBro03_SQ005_B03_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_B03 5', mRNA sequence
Length = 257
Score = 61.9 bits (31), Expect = 2e-008
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 512 atgcagatgatggagctctgcgccttcctcg 542
|||||||||||||||||||||||||||||||
Sbjct: 18 atgcagatgatggagctctgcgccttcctcg 48
>gb|BQ764706.1|BQ764706 EBca01_SQ004_L18_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ004_L18 5', mRNA sequence
Length = 394
Score = 56.0 bits (28), Expect = 1e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 159 agaagatgaagcggaagacgcggaacaagatc 190
|||||||||||||||||||| |||||||||||
Sbjct: 349 agaagatgaagcggaagacgaggaacaagatc 380
>gb|BI958037.1|BI958037 HVSMEn0013B04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0013B04f, mRNA sequence
Length = 951
Score = 48.1 bits (24), Expect = 3e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 159 agaagatgaagcggaagacgcggaacaagatc 190
|||||||||||||||||| | |||||||||||
Sbjct: 180 agaagatgaagcggaagaggaggaacaagatc 211
>gb|BI959229.1|BI959229 HVSMEn0018M06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018M06f, mRNA sequence
Length = 775
Score = 40.1 bits (20), Expect = 0.073
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 463 cgcggccctcttcgagcccc 482
||||||||||||||||||||
Sbjct: 420 cgcggccctcttcgagcccc 401
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 84,824
Number of Sequences: 312970
Number of extensions: 84824
Number of successful extensions: 23321
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23277
Number of HSP's gapped (non-prelim): 29
length of query: 542
length of database: 175,134,539
effective HSP length: 19
effective length of query: 523
effective length of database: 169,188,109
effective search space: 88485381007
effective search space used: 88485381007
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)