BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 44956.2.1
(1252 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK122708.1|CK122708 BES1824105i15 BES1824 Hordeum vulgar... 628 e-178
gb|AV913625.1|AV913625 AV913625 K. Sato unpublished cDNA li... 555 e-156
gb|BM097231.2|BM097231 EBpi07_SQ002_N01_R pistil, 12 DPA, n... 505 e-141
gb|AL503431.1|AL503431 AL503431 Hordeum vulgare Barke roots... 492 e-137
gb|AL505428.1|AL505428 AL505428 Hordeum vulgare Barke roots... 492 e-137
gb|CA012350.1|CA012350 HT05C23r HT Hordeum vulgare subsp. v... 484 e-135
gb|BG417399.2|BG417399 HVSMEk0017D09f Hordeum vulgare testa... 426 e-118
gb|CV054090.1|CV054090 BNEL106f2 Barley EST endosperm libra... 422 e-116
gb|AV918929.1|AV918929 AV918929 K. Sato unpublished cDNA li... 377 e-103
gb|BI958890.1|BI958890 HVSMEn0017A21f Hordeum vulgare rachi... 375 e-102
gb|BI954147.1|BI954147 HVSMEm0016G03f Hordeum vulgare green... 365 2e-099
gb|AL502696.1|AL502696 AL502696 Hordeum vulgare Barke roots... 301 3e-080
gb|BF263367.2|BF263367 HV_CEa0006I24f Hordeum vulgare seedl... 297 5e-079
gb|CA011564.1|CA011564 HT05C23u HT Hordeum vulgare subsp. v... 297 5e-079
gb|CK125619.1|CK125619 BES1824109e02 BES1824 Hordeum vulgar... 293 7e-078
gb|CA023895.1|CA023895 HZ47L19r HZ Hordeum vulgare subsp. v... 256 2e-066
gb|AL500851.1|AL500851 AL500851 Hordeum vulgare Barke roots... 228 4e-058
gb|AJ460556.1|AJ460556 AJ460556 S00002 Hordeum vulgare subs... 127 1e-027
gb|AJ433965.1|AJ433965 AJ433965 S00002 Hordeum vulgare subs... 125 4e-027
gb|BQ755185.1|BQ755185 EBed02_SQ003_P18_R endosperm, 8 DPA,... 96 3e-018
gb|BF065145.2|BF065145 HV_CEb0023I02f Hordeum vulgare seedl... 74 1e-011
gb|CV063744.1|CV063744 BNEL92g1 Barley EST endosperm librar... 46 0.003
gb|BF628984.1|BF628984 HVSMEb0009G23f Hordeum vulgare seedl... 44 0.011
gb|BI948540.1|BI948540 HVSMEl0010A09f Hordeum vulgare spike... 44 0.011
gb|BE214332.1|BE214332 HV_CEb0003C07f Hordeum vulgare seedl... 44 0.011
gb|BG416974.1|BG416974 HVSMEk0015H12f Hordeum vulgare testa... 44 0.011
gb|BG300730.2|BG300730 HVSMEb0018C20f Hordeum vulgare seedl... 44 0.011
gb|BG344991.2|BG344991 HVSMEg0018D05f Hordeum vulgare pre-a... 44 0.011
gb|BF261767.3|BF261767 HV_CEa0002C19f Hordeum vulgare seedl... 44 0.011
gb|BQ467252.1|BQ467252 HS03C14r HS Hordeum vulgare subsp. v... 44 0.011
gb|BQ766740.1|BQ766740 EBro08_SQ007_B01_R root, 3 week, dro... 44 0.011
gb|CB883342.1|CB883342 HQ01P05w HQ Hordeum vulgare subsp. v... 44 0.011
gb|BF628172.2|BF628172 HVSMEb0003F07f Hordeum vulgare seedl... 42 0.044
gb|BI955258.1|BI955258 HVSMEm0022D02f Hordeum vulgare green... 42 0.044
gb|BF631576.2|BF631576 HVSMEb0016H15f Hordeum vulgare seedl... 42 0.044
gb|BM370915.2|BM370915 EBro04_SQ002_N04_R root, 3 week, sal... 42 0.044
emb|AJ276357.1|HVU276357 Hordeum vulgare mRNA for dof zinc ... 42 0.044
emb|AJ312297.1|HVU312297 Hordeum vulgare sed gene for dof z... 42 0.044
gb|BE194182.1|BE194182 HVSMEh0084H13f Hordeum vulgare 5-45 ... 40 0.17
gb|BF616876.2|BF616876 HVSMEc0013E22f Hordeum vulgare seedl... 40 0.17
gb|BE454265.2|BE454265 HVSMEh0093H14f Hordeum vulgare 5-45 ... 40 0.17
gb|BI960461.1|BI960461 HVSMEn0024K21f Hordeum vulgare rachi... 40 0.17
gb|CA032416.1|CA032416 HX12P13r HX Hordeum vulgare subsp. v... 40 0.17
>gb|CK122708.1|CK122708 BES1824105i15 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010I155 5-PRIME, mRNA sequence
Length = 707
Score = 628 bits (317), Expect = e-178
Identities = 563/645 (87%)
Strand = Plus / Minus
Query: 358 ccaagttcggcagtcatatcagatgcaatgaaccctggtgcaatagcattcacattgata 417
|||||||| || ||||| || ||||| ||||| || ||||| || |||||||||||||||
Sbjct: 707 ccaagttccgcggtcatgtctgatgctatgaatccaggtgcgattgcattcacattgata 648
Query: 418 tttctgcttgcatactccctggcaactgtttttgtgaaaccaatcactccagccttggct 477
|| ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 647 ttcctgcttgcatattccctagcaactgtttttgtgaaaccaatgactccagccttggca 588
Query: 478 gcgctataattagcttggccaacattgccagtaagaccaactacagatgcaatgttgata 537
|| || ||||||||||| ||| ||||||||||||||||||| || ||||| ||||||||
Sbjct: 587 gcactgtaattagcttgaccagcattgccagtaagaccaacaactgatgctatgttgatg 528
Query: 538 atttttccctttctctttttcatcattacttttgttgcagcctgtgtacaaaggaagaca 597
| | |||||||| |||| ||||||||||||||||| |||||||||||||| ||||| |||
Sbjct: 527 actcttccctttttcttcttcatcattacttttgtggcagcctgtgtacagaggaaaaca 468
Query: 598 ccagtaagattcagatcaattacgtcttgccactgagatttcttcatcctcatcaacaat 657
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 467 ccagtaagatttagatcaattacatcttgccactgagatttcttcatcctcatcaacaat 408
Query: 658 gtgtctcgtgtaatccctgcattatttaccagcacatctattgttccccatttatctaga 717
|| || | ||||||||||||||||||||||| | || ||||||||||||||||| |||
Sbjct: 407 gtatccctcgtaatccctgcattatttaccaggatgtcaattgttccccatttatcaaga 348
Query: 718 gctgctttcatcatagactctacatcagcttcttttgaaacatctcctccgaaggtgata 777
||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||
Sbjct: 347 gctgctttcatcatagattctacatcagcttctttagaaacatctcctccaaaggtaata 288
Query: 778 gcctcaccaccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgg 837
|||| ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||
Sbjct: 287 gcctgaccaccagatgcttcaatctcttcagagactgcttcagcctctttcgaggatcgt 228
Query: 838 gcatagtttaccagaaccttgcatcctgcttttccaagggctagagcagttgccttacca 897
||||| || || || |||||||| || ||||||||||| || | ||| || || ||
Sbjct: 227 gcataattcactaggaccttgcagccagcttttccaagagccaatgcaacagcttttccg 168
Query: 898 atccctctagatgcacctgtaacaacaacaactggagcttccagcttggtagcatctttt 957
|||||||| || ||||| |||||||||||||||||||||||||||| |||||||| |
Sbjct: 167 atccctctggaagcacccgtaacaacaacaactggagcttccagctctgtagcatcgtgc 108
Query: 958 acaattgcttgttcaacagcggcaacatgggtttgcacaccagag 1002
|| | ||||||||||||||| || || ||||| |||||||||||
Sbjct: 107 acgactgcttgttcaacagcagcgacgtgggtgcgcacaccagag 63
>gb|AV913625.1|AV913625 AV913625 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22l20 5', mRNA sequence
Length = 640
Score = 555 bits (280), Expect = e-156
Identities = 478/544 (87%)
Strand = Plus / Minus
Query: 203 acattaccatccctccgtcaattgtaagcacctgtccagtcatatagctagctgcggggt 262
||||||||||||| || || || ||||||||||| || || || || || || || ||||
Sbjct: 544 acattaccatcccaccatcgatggtaagcacctgcccggtgatgtaactggccgccgggt 485
Query: 263 taagggccaggaactcgaccaaccctgcaacttcctctggttggccatatctccctaacg 322
| ||||||| |||||| |||||||| |||||||||||||| || ||||| ||||| || |
Sbjct: 484 tcagggccaagaactcaaccaacccagcaacttcctctggctgtccatacctccccaagg 425
Query: 323 gaatggttgacaagattttcttctcaagctcttctccaagttcggcagtcatatcagatg 382
|||| || ||||||||| ||||||||||||| ||||||||||| || ||||| || ||||
Sbjct: 424 gaatagtcgacaagattctcttctcaagctcctctccaagttccgcggtcatgtctgatg 365
Query: 383 caatgaaccctggtgcaatagcattcacattgatatttctgcttgcatactccctggcaa 442
| ||||| || ||||| || ||||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 364 ctatgaatccaggtgcgattgcattcacattgatattcctgcttgcatattccctagcaa 305
Query: 443 ctgtttttgtgaaaccaatcactccagccttggctgcgctataattagcttggccaacat 502
||||||||||||||||||| |||||||||||||| || || ||||||||||| ||| |||
Sbjct: 304 ctgtttttgtgaaaccaatgactccagccttggcagcactgtaattagcttgaccagcat 245
Query: 503 tgccagtaagaccaactacagatgcaatgttgataatttttccctttctctttttcatca 562
|||||||||||||||| || ||||| |||||||| | | |||||||| |||| |||||||
Sbjct: 244 tgccagtaagaccaacaactgatgctatgttgatgactcttccctttttcttcttcatca 185
Query: 563 ttacttttgttgcagcctgtgtacaaaggaagacaccagtaagattcagatcaattacgt 622
|||||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||| |
Sbjct: 184 ttacttttgtggcagcctgtgtacagaggaaaacaccagtaagatttagatcaattacat 125
Query: 623 cttgccactgagatttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcattat 682
||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||
Sbjct: 124 cttgccactgagatttcttcatcctcatcaacaatgtatccctcgtaatccctgcattat 65
Query: 683 ttaccagcacatctattgttccccatttatctagagctgctttcatcatagactctacat 742
||||||| | || ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 64 ttaccaggatgtcaattgttccccatttatcaagagctgctttcatcatagattctacat 5
Query: 743 cagc 746
||||
Sbjct: 4 cagc 1
>gb|BM097231.2|BM097231 EBpi07_SQ002_N01_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ002_N01 5', mRNA sequence
Length = 547
Score = 505 bits (255), Expect = e-141
Identities = 453/519 (87%)
Strand = Plus / Minus
Query: 484 taattagcttggccaacattgccagtaagaccaactacagatgcaatgttgataattttt 543
||||||||||| ||| ||||||||||||||||||| || ||||| |||||||| | | ||
Sbjct: 540 taattagcttgaccagcattgccagtaagaccaacaactgatgctatgttgatgactctt 481
Query: 544 ccctttctctttttcatcattacttttgttgcagcctgtgtacaaaggaagacaccagta 603
|||||| |||| ||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct: 480 ccctttttcttcttcatcattacttttgtggcagcctgtgtacagaggaaaacaccagta 421
Query: 604 agattcagatcaattacgtcttgccactgagatttcttcatcctcatcaacaatgtgtct 663
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 420 agatttagatcaattacatcttgccactgagatttcttcatcctcatcaacaatgtatcc 361
Query: 664 cgtgtaatccctgcattatttaccagcacatctattgttccccatttatctagagctgct 723
| ||||||||||||||||||||||| | || ||||||||||||||||| |||||||||
Sbjct: 360 ctcgtaatccctgcattatttaccaggatgtcaattgttccccatttatcaagagctgct 301
Query: 724 ttcatcatagactctacatcagcttcttttgaaacatctcctccgaaggtgatagcctca 783
||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||| |
Sbjct: 300 ttcatcatagattctacatcagcttctttagaaacatctcctccaaaggtaatagcctga 241
Query: 784 ccaccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcatag 843
|||||||||||||||||||||| ||||| ||||||||||||||||||| || |||||
Sbjct: 240 ccaccagatgcttcaatctcttcagagactgcttcagcctctttcgaggatcgtgcataa 181
Query: 844 tttaccagaaccttgcatcctgcttttccaagggctagagcagttgccttaccaatccct 903
|| || || |||||||| || ||||||||||| || | ||| || || || ||||||
Sbjct: 180 ttcactaggaccttgcagccagcttttccaagagccaatgcaacagcttttccgatccct 121
Query: 904 ctagatgcacctgtaacaacaacaactggagcttccagcttggtagcatcttttacaatt 963
|| || ||||| |||||||||||||||||||||||||||| |||||||| | || | |
Sbjct: 120 ctggaagcacccgtaacaacaacaactggagcttccagctctgtagcatcgtgcacgact 61
Query: 964 gcttgttcaacagcggcaacatgggtttgcacaccagag 1002
|||||||||||||| || || ||||| |||||||||||
Sbjct: 60 gcttgttcaacagcagcgacgtgggtgcgcacaccagag 22
>gb|AL503431.1|AL503431 AL503431 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02C02T 5', mRNA sequence
Length = 700
Score = 492 bits (248), Expect = e-137
Identities = 453/520 (87%), Gaps = 1/520 (0%)
Strand = Plus / Minus
Query: 484 taattagcttggccaacattgccagtaagaccaactaca-gatgcaatgttgataatttt 542
||||||||||| ||| ||||||||||||||||||| || ||||| |||||||| | | |
Sbjct: 673 taattagcttgaccagcattgccagtaagaccaacaacttgatgctatgttgatgactct 614
Query: 543 tccctttctctttttcatcattacttttgttgcagcctgtgtacaaaggaagacaccagt 602
||||||| |||| ||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 613 tccctttttcttcttcatcattacttttgtggcagcctgtgtacagaggaaaacaccagt 554
Query: 603 aagattcagatcaattacgtcttgccactgagatttcttcatcctcatcaacaatgtgtc 662
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 553 aagatttagatcaattacatcttgccactgagatttcttcatcctcatcaacaatgtatc 494
Query: 663 tcgtgtaatccctgcattatttaccagcacatctattgttccccatttatctagagctgc 722
| ||||||||||||||||||||||| | || ||||||||||||||||| ||||||||
Sbjct: 493 cctcgtaatccctgcattatttaccaggatgtcaattgttccccatttatcaagagctgc 434
Query: 723 tttcatcatagactctacatcagcttcttttgaaacatctcctccgaaggtgatagcctc 782
|||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||
Sbjct: 433 tttcatcatagattctacatcagcttctttagaaacatctcctccaaaggtaatagcctg 374
Query: 783 accaccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcata 842
||||||||||||||||||||||| ||||| ||||||||||||||||||| || |||||
Sbjct: 373 accaccagatgcttcaatctcttcagagactgcttcagcctctttcgaggatcgtgcata 314
Query: 843 gtttaccagaaccttgcatcctgcttttccaagggctagagcagttgccttaccaatccc 902
|| || || |||||||| || ||||||||||| || | ||| || || || |||||
Sbjct: 313 attcactaggaccttgcagccagcttttccaagagccaatgcaacagcttttccgatccc 254
Query: 903 tctagatgcacctgtaacaacaacaactggagcttccagcttggtagcatcttttacaat 962
||| || ||||| |||||||||||||||||||||||||||| |||||||| | || |
Sbjct: 253 tctggaagcacccgtaacaacaacaactggagcttccagctctgtagcatcgtgcacgac 194
Query: 963 tgcttgttcaacagcggcaacatgggtttgcacaccagag 1002
||||||||||||||| || || ||||| |||||||||||
Sbjct: 193 tgcttgttcaacagcagcgacgtgggtgcgcacaccagag 154
>gb|AL505428.1|AL505428 AL505428 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08H01V 5', mRNA sequence
Length = 700
Score = 492 bits (248), Expect = e-137
Identities = 495/573 (86%), Gaps = 4/573 (0%)
Strand = Plus / Minus
Query: 434 ccctggcaactgttttt-gtgaaaccaa-tcactcca-gccttggct-gcgctataatta 489
|||| |||||||||||| |||||||||| | |||||| |||||||| || || ||||||
Sbjct: 650 ccctagcaactgttttttgtgaaaccaaatgactccaagccttggcaagcactgtaatta 591
Query: 490 gcttggccaacattgccagtaagaccaactacagatgcaatgttgataatttttcccttt 549
||||| ||| ||||||||||||||||||| | |||| |||||||| | | ||||||||
Sbjct: 590 gcttgaccagcattgccagtaagaccaacaantnatgctatgttgatgactcttcccttt 531
Query: 550 ctctttttcatcattacttttgttgcagcctgtgtacaaaggaagacaccagtaagattc 609
|||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 530 ttcttcttcatcattacttttgtggcagcctgtgtacagaggaaaacaccagtaagattt 471
Query: 610 agatcaattacgtcttgccactgagatttcttcatcctcatcaacaatgtgtctcgtgta 669
||||||||||| ||||||| |||||||||||||||||||||||||||||| || | |||
Sbjct: 470 agatcaattacatcttgccnctgagatttcttcatcctcatcaacaatgtatccctcgta 411
Query: 670 atccctgcattatttaccagcacatctattgttccccatttatctagagctgctttcatc 729
|||||||||||||||||||| | || ||||||||||||||||| |||||||||||||||
Sbjct: 410 atccctgcattatttaccaggatgtcaattgttccccatttatcaagagctgctttcatc 351
Query: 730 atagactctacatcagcttcttttgaaacatctcctccgaaggtgatagcctcaccacca 789
||||| ||||||||||||||||| |||||||||||||| ||||| ||||||| |||||||
Sbjct: 350 atagattctacatcagcttctttagaaacatctcctccaaaggtaatagcctgaccacca 291
Query: 790 gatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggcatagtttacc 849
|||||||||||||||| ||||| ||||||||||||||||||| || ||||| || ||
Sbjct: 290 gatgcttcaatctcttcagagactgcttcagcctctttcgaggatcgtgcataattcact 231
Query: 850 agaaccttgcatcctgcttttccaagggctagagcagttgccttaccaatccctctagat 909
|| |||||||| || ||||||||||| || | ||| || || || |||||||| ||
Sbjct: 230 aggaccttgcagccagcttttccaagagccaatgcaacagcttttccgatccctctggaa 171
Query: 910 gcacctgtaacaacaacaactggagcttccagcttggtagcatcttttacaattgcttgt 969
||||| |||||||||||||||||||||||||||| |||||||| | || | |||||||
Sbjct: 170 gcacccgtaacaacaacaactggagcttccagctctgtagcatcgtgcacgactgcttgt 111
Query: 970 tcaacagcggcaacatgggtttgcacaccagag 1002
|||||||| || || ||||| |||||||||||
Sbjct: 110 tcaacagcagcgacgtgggtgcgcacaccagag 78
>gb|CA012350.1|CA012350 HT05C23r HT Hordeum vulgare subsp. vulgare cDNA clone HT05C23
5-PRIME, mRNA sequence
Length = 565
Score = 484 bits (244), Expect = e-135
Identities = 438/503 (87%)
Strand = Plus / Minus
Query: 500 cattgccagtaagaccaactacagatgcaatgttgataatttttccctttctctttttca 559
||||||||||||||||||| || ||||| |||||||| | | |||||||| |||| ||||
Sbjct: 565 cattgccagtaagaccaacaactgatgctatgttgatgactcttccctttttcttcttca 506
Query: 560 tcattacttttgttgcagcctgtgtacaaaggaagacaccagtaagattcagatcaatta 619
||||||||| ||| |||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct: 505 tcattacttntgtggcagcctgtgtacagaggaaaacaccagtaagatttagatcaatta 446
Query: 620 cgtcttgccactgagatttcttcatcctcatcaacaatgtgtctcgtgtaatccctgcat 679
| |||||||||||||||||||||||||||||||||||||| || | |||||||||||||
Sbjct: 445 catcttgccactgagatttcttcatcctcatcaacaatgtatccctcgtaatccctgcat 386
Query: 680 tatttaccagcacatctattgttccccatttatctagagctgctttcatcatagactcta 739
|||||||||| | || ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 385 tatttaccaggatgtcaattgttccccatttatcaagagctgctttcatcatagattcta 326
Query: 740 catcagcttcttttgaaacatctcctccgaaggtgatagcctcaccaccagatgcttcaa 799
||||||||||||| |||||||||||||| ||||| ||||||| |||||||||||||||||
Sbjct: 325 catcagcttctttagaaacatctcctccaaaggtaatagcctgaccaccagatgcttcaa 266
Query: 800 tctctttggagacctcttcagcctctttcgaggaccgggcatagtttaccagaaccttgc 859
|||||| ||||| ||||||||||||||||||| || ||||| || || || |||||||
Sbjct: 265 tctcttcagagactgcttcagcctctttcgaggatcgtgcataattcactaggaccttgc 206
Query: 860 atcctgcttttccaagggctagagcagttgccttaccaatccctctagatgcacctgtaa 919
| || ||||||||||| || | ||| || || || |||||||| || ||||| ||||
Sbjct: 205 agccagcttttccaagagccaatgcaacagcttttccgatccctctggaagcacccgtaa 146
Query: 920 caacaacaactggagcttccagcttggtagcatcttttacaattgcttgttcaacagcgg 979
|||||||||||||||||||||||| |||||||| | || | ||||||||||||||| |
Sbjct: 145 caacaacaactggagcttccagctctgtagcatcgtgcacgactgcttgttcaacagcag 86
Query: 980 caacatgggtttgcacaccagag 1002
| || ||||| |||||||||||
Sbjct: 85 cgacgtgggtgcgcacaccagag 63
>gb|BG417399.2|BG417399 HVSMEk0017D09f Hordeum vulgare testa/pericarp EST library HVcDNA0013
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEk0017D09f, mRNA sequence
Length = 802
Score = 426 bits (215), Expect = e-118
Identities = 403/463 (87%), Gaps = 2/463 (0%)
Strand = Plus / Minus
Query: 540 ttttccctttctctttttcatcattacttttgttgcagcctgtgtacaaaggaagacacc 599
|||||||||| ||||||||||||| ||||||| |||||||| ||||| ||||| |||||
Sbjct: 694 ttttcccttt-tctttttcatcat-acttttggggcagcctgggtacagaggaacacacc 637
Query: 600 agtaagattcagatcaattacgtcttgccactgagatttcttcatcctcatcaacaatgt 659
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 636 agtaagatttagatcaattacatcttgccactgagatttcttcatcctcatcaacaatgt 577
Query: 660 gtctcgtgtaatccctgcattatttaccagcacatctattgttccccatttatctagagc 719
|| | ||||||||||||||||||||||| | || ||||||||||||||||| |||||
Sbjct: 576 atccctcgtaatccctgcattatttaccaggatgtcaattgttccccatttatcaagagc 517
Query: 720 tgctttcatcatagactctacatcagcttcttttgaaacatctcctccgaaggtgatagc 779
||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct: 516 tgctttcatcatagattctacatcagcttctttagaaacatctcctccaaaggtaatagc 457
Query: 780 ctcaccaccagatgcttcaatctctttggagacctcttcagcctctttcgaggaccgggc 839
|| ||||||||||||||||||||||| ||||| ||||||||||||||||||| || ||
Sbjct: 456 ctgaccaccagatgcttcaatctcttcagagactgcttcagcctctttcgaggatcgtgc 397
Query: 840 atagtttaccagaaccttgcatcctgcttttccaagggctagagcagttgccttaccaat 899
||| || || || |||||||| || ||||||||||| || | ||| || || || ||
Sbjct: 396 ataattcactaggaccttgcagccagcttttccaagagccaatgcaacagcttttccgat 337
Query: 900 ccctctagatgcacctgtaacaacaacaactggagcttccagcttggtagcatcttttac 959
|||||| || ||||| |||||||||||||||||||||||||||| |||||||| | ||
Sbjct: 336 ccctctggaagcacccgtaacaacaacaactggagcttccagctctgtagcatcgtgcac 277
Query: 960 aattgcttgttcaacagcggcaacatgggtttgcacaccagag 1002
| ||||||||||||||| || || ||||| |||||||||||
Sbjct: 276 gactgcttgttcaacagcagcgacgtgggtgcgcacaccagag 234
>gb|CV054090.1|CV054090 BNEL106f2 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL106f2 5' similar to OSJNBb0006N15.11, mRNA
sequence
Length = 702
Score = 422 bits (213), Expect = e-116
Identities = 416/481 (86%), Gaps = 2/481 (0%)
Strand = Plus / Minus
Query: 523 gatgcaatgttgataatttttccctttctctttttcatcattacttttgttgca-gcctg 581
||||| |||||||| | | | |||||| |||| |||||||||||||| || ||| |||||
Sbjct: 689 gatgctatgttgatgactctcccctttttcttcttcatcattacttt-gtggcaagcctg 631
Query: 582 tgtacaaaggaagacaccagtaagattcagatcaattacgtcttgccactgagatttctt 641
|||||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct: 630 tgtacagaggaaaacaccagtaagatttagatcaattacatcttgccactgagatttctt 571
Query: 642 catcctcatcaacaatgtgtctcgtgtaatccctgcattatttaccagcacatctattgt 701
|||||||||||||||||| || | ||||||||||||||||||||||| | || |||||
Sbjct: 570 catcctcatcaacaatgtatccctcgtaatccctgcattatttaccaggatgtcaattgt 511
Query: 702 tccccatttatctagagctgctttcatcatagactctacatcagcttcttttgaaacatc 761
|||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 510 tccccatttatcaagagctgctttcatcatagattctacatcagcttctttagaaacatc 451
Query: 762 tcctccgaaggtgatagcctcaccaccagatgcttcaatctctttggagacctcttcagc 821
|||||| ||||| ||||||| ||||||||||||||||||||||| ||||| |||||||
Sbjct: 450 tcctccaaaggtaatagcctgaccaccagatgcttcaatctcttcagagactgcttcagc 391
Query: 822 ctctttcgaggaccgggcatagtttaccagaaccttgcatcctgcttttccaagggctag 881
|||||||||||| || ||||| || || || |||||||| || ||||||||||| || |
Sbjct: 390 ctctttcgaggatcgtgcataattcactaggaccttgcagccagcttttccaagagccaa 331
Query: 882 agcagttgccttaccaatccctctagatgcacctgtaacaacaacaactggagcttccag 941
||| || || || |||||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 330 tgcaacagcttttccgatccctctggaagcacccgtaacaacaacaactggagcttccag 271
Query: 942 cttggtagcatcttttacaattgcttgttcaacagcggcaacatgggtttgcacaccaga 1001
|| |||||||| | || | ||||||||||||||| || || ||||| ||||||||||
Sbjct: 270 ctctgtagcatcgtgcacgactgcttgttcaacagcagcgacgtgggtgcgcacaccaga 211
Query: 1002 g 1002
|
Sbjct: 210 g 210
>gb|AV918929.1|AV918929 AV918929 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22l20 3', mRNA sequence
Length = 690
Score = 377 bits (190), Expect = e-103
Identities = 372/430 (86%), Gaps = 2/430 (0%)
Strand = Plus / Plus
Query: 203 acattaccatccctccgtcaattgtaagcacctgtccagtcatatagctagctgcggggt 262
||||||||||||| || || || ||||||||||| || || || || || || || ||||
Sbjct: 261 acattaccatcccaccatcgatggtaagcacctgcccggtgatgtaactggccgccgggt 320
Query: 263 taagggccaggaactcgaccaaccctgcaacttcctctggttggccatatctccctaacg 322
| ||||||| |||||| |||||||| |||||||||||||| || ||||| ||||| || |
Sbjct: 321 tcagggccaagaactcaaccaacccagcaacttcctctggctgtccatacctccccaagg 380
Query: 323 gaatggttgacaagattttcttctcaagctcttctccaagttcggcagtcatatcagatg 382
|||| || ||||||||| ||||||||||||| ||||||||||| || ||||| || ||||
Sbjct: 381 gaatagtcgacaagattctcttctcaagctcctctccaagttccgcggtcatgtctgatg 440
Query: 383 caatgaaccctggtgcaatagcattcacattgatatttctgcttgcatactccctggcaa 442
| ||||| || ||||| || ||||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 441 ctatgaatccaggtgcgattgcattcacattgatattcctgcttgcatattccctagcaa 500
Query: 443 ctgtttttgtgaaaccaatcactccagccttggctgcgctataattagcttggccaacat 502
||||||||||||||||||| |||||||||||||| || || ||||||||||| ||| |||
Sbjct: 501 ctgtttttgtgaaaccaatgactccagccttggcagcactgtaattagcttgaccagcat 560
Query: 503 tgccagtaagaccaactacagatgcaatgttgataatttttccctttctctttttcatca 562
|||||||||||||||| || ||||| |||||||| | | |||||||| |||| |||||||
Sbjct: 561 tgccagtaagaccaacaactgatgctatgttgatgactcttccctttttcttcttcatca 620
Query: 563 tta-cttttgttgcag-cctgtgtacaaaggaagacaccagtaagattcagatcaattac 620
||| ||||||| |||| |||||||||| ||||| |||||||||||||| |||||||||||
Sbjct: 621 ttaccttttgtggcagccctgtgtacagaggaaaacaccagtaagatttagatcaattac 680
Query: 621 gtcttgccac 630
|||||||||
Sbjct: 681 atcttgccac 690
>gb|BI958890.1|BI958890 HVSMEn0017A21f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0017A21f,
mRNA sequence
Length = 621
Score = 375 bits (189), Expect = e-102
Identities = 353/408 (86%)
Strand = Plus / Minus
Query: 595 acaccagtaagattcagatcaattacgtcttgccactgagatttcttcatcctcatcaac 654
|||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 617 acaccagtaagatttagatcaattacatcttgccantgagatttcttcatcctcatcaac 558
Query: 655 aatgtgtctcgtgtaatccctgcattatttaccagcacatctattgttccccatttatct 714
||||| || | ||||||||||||||||||||||| | || |||||||||||||||||
Sbjct: 557 aatgtatccctcgtaatccctgcattatttaccaggatgtcaattgttccccatttatca 498
Query: 715 agagctgctttcatcatagactctacatcagcttcttttgaaacatctcctccgaaggtg 774
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct: 497 agagctgctttcatcatagattctacatcagcttctttagaaacatctcctccaaaggta 438
Query: 775 atagcctcaccaccagatgcttcaatctctttggagacctcttcagcctctttcgaggac 834
||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 437 atagcctgaccaccagatgcttcaatctcttcagagactgcttcagcctctttcgaggat 378
Query: 835 cgggcatagtttaccagaaccttgcatcctgcttttccaagggctagagcagttgcctta 894
|| ||||| || || || |||||||| || ||||||||||| || | ||| || ||
Sbjct: 377 cgtgcataattcactaggaccttgcagccagcttttccaagagccaatgcaacagctttt 318
Query: 895 ccaatccctctagatgcacctgtaacaacaacaactggagcttccagcttggtagcatct 954
|| |||||||| || ||||| |||||||||||||||||| ||||||||| ||||||||
Sbjct: 317 ccgatccctctggaagcacccgtaacaacaacaactggaacttccagctctgtagcatcg 258
Query: 955 tttacaattgcttgttcaacagcggcaacatgggtttgcacaccagag 1002
| || | ||||||||||||||| || || ||||| |||||||||||
Sbjct: 257 tgcacgactgcttgttcaacagcagcgacgtgggtgcgcacaccagag 210
>gb|BI954147.1|BI954147 HVSMEm0016G03f Hordeum vulgare green seedling EST library HVcDNA0014
(Blumeria infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEm0016G03f, mRNA sequence
Length = 664
Score = 365 bits (184), Expect = 2e-099
Identities = 352/408 (86%)
Strand = Plus / Minus
Query: 595 acaccagtaagattcagatcaattacgtcttgccactgagatttcttcatcctcatcaac 654
|||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 465 acaccagttagatttagatcaattcattcttgccactgagatttcttcatcctcatcaac 406
Query: 655 aatgtgtctcgtgtaatccctgcattatttaccagcacatctattgttccccatttatct 714
||||| || | ||||||||||||||||||||||| | || |||||||||||||||||
Sbjct: 405 aatgtatccctcgtaatccctgcattatttaccaggatgtcaattgttccccatttatca 346
Query: 715 agagctgctttcatcatagactctacatcagcttcttttgaaacatctcctccgaaggtg 774
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct: 345 agagctgctttcatcatagattctacatcagcttctttagaaacatctcctccaaaggta 286
Query: 775 atagcctcaccaccagatgcttcaatctctttggagacctcttcagcctctttcgaggac 834
||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 285 atagcctgaccaccagatgcttcaatctcttcagagactgcttcagcctctttcgaggat 226
Query: 835 cgggcatagtttaccagaaccttgcatcctgcttttccaagggctagagcagttgcctta 894
|| ||||| || || || |||||||| || ||||||||||| || | ||| || ||
Sbjct: 225 cgtgcataattcactaggaccttgcagccagcttttccaagagccaatgcaacagctttt 166
Query: 895 ccaatccctctagatgcacctgtaacaacaacaactggagcttccagcttggtagcatct 954
|| |||||||| || ||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 165 ccgatccctctggaagcacccgtaacaacaacaactggagcttccagctctgtagcatcg 106
Query: 955 tttacaattgcttgttcaacagcggcaacatgggtttgcacaccagag 1002
| || | ||||||||||||||| || || ||||| |||||||||||
Sbjct: 105 tgcacgactgcttgttcaacagcagcgacgtgggtgcgcacaccagag 58
>gb|AL502696.1|AL502696 AL502696 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08H01u 3', mRNA sequence
Length = 451
Score = 301 bits (152), Expect = 3e-080
Identities = 302/352 (85%)
Strand = Plus / Plus
Query: 203 acattaccatccctccgtcaattgtaagcacctgtccagtcatatagctagctgcggggt 262
||||||||||||| || || || ||||||||||| || || || || || || || ||||
Sbjct: 99 acattaccatcccaccatcgatggtaagcacctgcccggtgatgtaactggccgccgggt 158
Query: 263 taagggccaggaactcgaccaaccctgcaacttcctctggttggccatatctccctaacg 322
| ||||||| |||||| |||||||| |||||||||||||| || ||||| ||||| || |
Sbjct: 159 tcagggccaagaactcaaccaacccagcaacttcctctggctgtccatacctccccaagg 218
Query: 323 gaatggttgacaagattttcttctcaagctcttctccaagttcggcagtcatatcagatg 382
|||| || ||||||||| ||||||||||||| ||||||||||| || ||||| || ||||
Sbjct: 219 gaatagtcgacaagattctcttctcaagctcctctccaagttccgcggtcatgtctgatg 278
Query: 383 caatgaaccctggtgcaatagcattcacattgatatttctgcttgcatactccctggcaa 442
| ||||| || ||||| || ||||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 279 ctatgaatccaggtgcgattgcattcacattgatattcctgcttgcatattccctagcaa 338
Query: 443 ctgtttttgtgaaaccaatcactccagccttggctgcgctataattagcttggccaacat 502
||||||||||||||||||| |||||||||||||| || || ||||||||||| ||| |||
Sbjct: 339 ctgtttttgtgaaaccaatgactccagccttggcagcactgtaattagcttgaccagcat 398
Query: 503 tgccagtaagaccaactacagatgcaatgttgataatttttccctttctctt 554
|||||||||||||||| || ||||| |||||||| | | |||||||| ||||
Sbjct: 399 tgccagtaagaccaacaactgatgctatgttgatgactcttccctttttctt 450
>gb|BF263367.2|BF263367 HV_CEa0006I24f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0006I24f, mRNA sequence
Length = 593
Score = 297 bits (150), Expect = 5e-079
Identities = 290/337 (86%)
Strand = Plus / Minus
Query: 617 ttacgtcttgccactgagatttcttcatcctcatcaacaatgtgtctcgtgtaatccctg 676
|||| ||||||||||||||| ||||||||||||||| |||||| || | ||||||||||
Sbjct: 592 ttacatcttgccactgagatntcttcatcctcatcagcaatgtatccctcgtaatccctg 533
Query: 677 cattatttaccagcacatctattgttccccatttatctagagctgctttcatcatagact 736
||||||||| ||| | || ||||||||||||||||| |||||||||||||||||||| |
Sbjct: 532 cattatttagcaggatgtcaattgttccccatttatcaagagctgctttcatcatagatt 473
Query: 737 ctacatcagcttcttttgaaacatctcctccgaaggtgatagcctcaccaccagatgctt 796
|||||||||||||||| |||||||||||||| ||||| ||||||| ||||| ||||||||
Sbjct: 472 ctacatcagcttctttagaaacatctcctccaaaggtaatagcctgaccacaagatgctt 413
Query: 797 caatctctttggagacctcttcagcctctttcgaggaccgggcatagtttaccagaacct 856
|| |||||| ||||| ||||||||||||||||||| || ||||| || || || ||||
Sbjct: 412 cagtctcttcagagactgcttcagcctctttcgaggatcgtgcataattcactaggacct 353
Query: 857 tgcatcctgcttttccaagggctagagcagttgccttaccaatccctctagatgcacctg 916
|||| || ||||||||||| || | ||| || || || |||||||| || ||||| |
Sbjct: 352 tgcagccagcttttccaagagccaatgcaacagcttttccgatccctctggaagcacccg 293
Query: 917 taacaacaacaactggagcttccagcttggtagcatc 953
||||||||||||||||||||||||||| ||||||||
Sbjct: 292 taacaacaacaactggagcttccagctctgtagcatc 256
>gb|CA011564.1|CA011564 HT05C23u HT Hordeum vulgare subsp. vulgare cDNA clone HT05C23
3-PRIME, mRNA sequence
Length = 543
Score = 297 bits (150), Expect = 5e-079
Identities = 288/334 (86%)
Strand = Plus / Plus
Query: 203 acattaccatccctccgtcaattgtaagcacctgtccagtcatatagctagctgcggggt 262
||||||||||||| || || || ||||||||||| || || || || || || || ||||
Sbjct: 204 acattaccatcccaccatcgatggtaagcacctgcccggtgatgtaactggccgccgggt 263
Query: 263 taagggccaggaactcgaccaaccctgcaacttcctctggttggccatatctccctaacg 322
| ||||||| |||||| |||||||| |||||||||||||| || ||||| ||||| || |
Sbjct: 264 tcagggccaagaactcaaccaacccagcaacttcctctggctgtccatacctccccaagg 323
Query: 323 gaatggttgacaagattttcttctcaagctcttctccaagttcggcagtcatatcagatg 382
|||| || ||||||||| ||||||||||||| ||||||||||| || ||||| || ||||
Sbjct: 324 gaatagtcgacaagattctcttctcaagctcctctccaagttccgcggtcatgtctgatg 383
Query: 383 caatgaaccctggtgcaatagcattcacattgatatttctgcttgcatactccctggcaa 442
| ||||| || ||||| || ||||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 384 ctatgaatccaggtgcgattgcattcacattgatattcctgcttgcatattccctagcaa 443
Query: 443 ctgtttttgtgaaaccaatcactccagccttggctgcgctataattagcttggccaacat 502
||||||||||||||||||| |||||||||||||| || || ||||||||||| ||| |||
Sbjct: 444 ctgtttttgtgaaaccaatgactccagccttggcagcactgtaattagcttgaccagcat 503
Query: 503 tgccagtaagaccaactacagatgcaatgttgat 536
|||||||||||||||| || ||||| ||||||||
Sbjct: 504 tgccagtaagaccaacaactgatgctatgttgat 537
>gb|CK125619.1|CK125619 BES1824109e02 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E029 5-PRIME, mRNA sequence
Length = 598
Score = 293 bits (148), Expect = 7e-078
Identities = 322/378 (85%), Gaps = 2/378 (0%)
Strand = Plus / Minus
Query: 627 ccactgagatttcttcatcctcatcaa-caatgtgtctcgtgtaatccctgcattattta 685
||||||||||||||||||||||||||| |||||| || | ||| |||| |||||||||
Sbjct: 598 ccactgagatttcttcatcctcatcaaacaatgtatccctcgtatnccctncattattta 539
Query: 686 ccagcacatctattgttccccatttatctagagctgctttcatcatagactctacatcag 745
|||| | || ||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 538 ccaggatgtcaattgttccccatttatcaagagctgctttcatcatagattctacatcag 479
Query: 746 cttcttttgaaacatct-cctccgaaggtgatagcctcaccaccagatgcttcaatctct 804
||||||| ||||||||| ||||| ||||| ||||||| ||||||||||||||||||||||
Sbjct: 478 cttctttagaaacatctncctccaaaggtaatagcctgaccaccagatgcttcaatctct 419
Query: 805 ttggagacctcttcagcctctttcgaggaccgggcatagtttaccagaaccttgcatcct 864
| ||||| ||||||||||||||||||| || ||||| || || || |||||||| ||
Sbjct: 418 tcagagactgcttcagcctctttcgaggatcgtgcataattcactaggaccttgcagcca 359
Query: 865 gcttttccaagggctagagcagttgccttaccaatccctctagatgcacctgtaacaaca 924
||||||||||| || | ||| || || || |||||||| || ||||| |||||||||
Sbjct: 358 gcttttccaagagccaatgcaacagcttttccgatccctctggaagcacccgtaacaaca 299
Query: 925 acaactggagcttccagcttggtagcatcttttacaattgcttgttcaacagcggcaaca 984
||||||||||||||||||| |||||||| | || | ||||||||||||||| || ||
Sbjct: 298 acaactggagcttccagctctgtagcatcgtgcacgactgcttgttcaacagcagcgacg 239
Query: 985 tgggtttgcacaccagag 1002
||||| |||||||||||
Sbjct: 238 tgggtgcgcacaccagag 221
>gb|CA023895.1|CA023895 HZ47L19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ47L19
5-PRIME, mRNA sequence
Length = 515
Score = 256 bits (129), Expect = 2e-066
Identities = 258/301 (85%)
Strand = Plus / Plus
Query: 203 acattaccatccctccgtcaattgtaagcacctgtccagtcatatagctagctgcggggt 262
||||||||||||| || || || ||||||||||| || || || || || || || ||||
Sbjct: 215 acattaccatcccaccatcgatggtaagcacctgcccggtgatgtaactggccgccgggt 274
Query: 263 taagggccaggaactcgaccaaccctgcaacttcctctggttggccatatctccctaacg 322
| ||||||| |||||| |||||||| |||||||||||||| || ||||| ||||| || |
Sbjct: 275 tcagggccaagaactcaaccaacccagcaacttcctctggctgtccatacctccccaagg 334
Query: 323 gaatggttgacaagattttcttctcaagctcttctccaagttcggcagtcatatcagatg 382
|||| || ||||||||| ||||||||||||| ||||||||||| || ||||| || ||||
Sbjct: 335 gaatagtcgacaagattctcttctcaagctcctctccaagttccgcggtcatgtctgatg 394
Query: 383 caatgaaccctggtgcaatagcattcacattgatatttctgcttgcatactccctggcaa 442
| ||||| || ||||| || ||||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 395 ctatgaatccaggtgcgattgcattcacattgatattcctgcttgcatattccctagcaa 454
Query: 443 ctgtttttgtgaaaccaatcactccagccttggctgcgctataattagcttggccaacat 502
||||||||||||||||||| |||||||||||||| || || ||||||||||| ||| |||
Sbjct: 455 ctgtttttgtgaaaccaatgactccagccttggcagcactgtaattagcttgaccagcat 514
Query: 503 t 503
|
Sbjct: 515 t 515
>gb|AL500851.1|AL500851 AL500851 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02C02u 3', mRNA sequence
Length = 653
Score = 228 bits (115), Expect = 4e-058
Identities = 229/267 (85%)
Strand = Plus / Plus
Query: 203 acattaccatccctccgtcaattgtaagcacctgtccagtcatatagctagctgcggggt 262
||||||||||||| || || || ||||||||||| || || || || || || || ||||
Sbjct: 250 acattaccatcccaccatcgatggtaagcacctgcccggtgatgtaactggccgccgggt 309
Query: 263 taagggccaggaactcgaccaaccctgcaacttcctctggttggccatatctccctaacg 322
| ||||||| |||||| |||||||| |||||||||||||| || ||||| ||||| || |
Sbjct: 310 tcagggccaagaactcaaccaacccagcaacttcctctggctgtccatacctccccaagg 369
Query: 323 gaatggttgacaagattttcttctcaagctcttctccaagttcggcagtcatatcagatg 382
|||| || ||||||||| ||||||||||||| ||||||||||| || ||||| || ||||
Sbjct: 370 gaatagtcgacaagattctcttctcaagctcctctccaagttccgcggtcatgtctgatg 429
Query: 383 caatgaaccctggtgcaatagcattcacattgatatttctgcttgcatactccctggcaa 442
| ||||| || ||||| || ||||||||||||||||| ||||||||||| ||||| ||||
Sbjct: 430 ctatgaatccaggtgcgattgcattcacattgatattcctgcttgcatattccctagcaa 489
Query: 443 ctgtttttgtgaaaccaatcactccag 469
||||||||||||||||||| |||||||
Sbjct: 490 ctgtttttgtgaaaccaatgactccag 516
>gb|AJ460556.1|AJ460556 AJ460556 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200056F05F1, mRNA sequence
Length = 180
Score = 127 bits (64), Expect = 1e-027
Identities = 145/172 (84%)
Strand = Plus / Minus
Query: 203 acattaccatccctccgtcaattgtaagcacctgtccagtcatatagctagctgcggggt 262
||||||||||||| || || || ||||||||||| || || || || || || || ||||
Sbjct: 180 acattaccatcccaccatcgatggtaagcacctgcccggtgatgtaactggccgccgggt 121
Query: 263 taagggccaggaactcgaccaaccctgcaacttcctctggttggccatatctccctaacg 322
| ||||||| |||||| |||||||| |||||||||||||| || ||||| ||||| || |
Sbjct: 120 tcagggccaagaactcaaccaacccagcaacttcctctggctgtccatacctccccaagg 61
Query: 323 gaatggttgacaagattttcttctcaagctcttctccaagttcggcagtcat 374
|||| || ||||||||| ||||||||||||| ||||||||||| || |||||
Sbjct: 60 gaatagtcgacaagattctcttctcaagctcctctccaagttccgcggtcat 9
>gb|AJ433965.1|AJ433965 AJ433965 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200066F07F1, mRNA sequence
Length = 338
Score = 125 bits (63), Expect = 4e-027
Identities = 138/163 (84%)
Strand = Plus / Minus
Query: 203 acattaccatccctccgtcaattgtaagcacctgtccagtcatatagctagctgcggggt 262
||||||||||||| || || || ||||||||||| || || || || || || || ||||
Sbjct: 170 acattaccatcccaccatcgatggtaagcacctgcccggtgatgtaactggccgccgggt 111
Query: 263 taagggccaggaactcgaccaaccctgcaacttcctctggttggccatatctccctaacg 322
| ||||||| |||||| |||||||| |||||||||||||| || ||||| ||||| || |
Sbjct: 110 tcagggccaagaactcaaccaacccagcaacttcctctggctgtccatacctccccaagg 51
Query: 323 gaatggttgacaagattttcttctcaagctcttctccaagttc 365
|||| || ||||||||| ||||||||||||| |||||||||||
Sbjct: 50 gaatagtcgacaagattctcttctcaagctcctctccaagttc 8
>gb|BQ755185.1|BQ755185 EBed02_SQ003_P18_R endosperm, 8 DPA, no treatment, cv Optic, EBed02
Hordeum vulgare subsp. vulgare cDNA clone
EBed02_SQ003_P18 5', mRNA sequence
Length = 381
Score = 95.6 bits (48), Expect = 3e-018
Identities = 154/188 (81%), Gaps = 1/188 (0%)
Strand = Plus / Minus
Query: 815 cttcagcctctttcgaggaccgggcatagtttaccagaaccttgcatcctgcttttccaa 874
||||||||||||||||||| || ||||| || || || |||||||| || ||||||||||
Sbjct: 373 cttcagcctctttcgaggatcgtgcataattcactaggaccttgcagccagcttttccaa 314
Query: 875 gggctagagcagttgccttaccaatccctctagatgcacctgtaacaacaacaactggag 934
| || | ||| || || || |||||||| || ||||| |||||||||||||||||||
Sbjct: 313 gagccaatgcaacagcttttccgatccctctggaagcacccgtaacaacaacaactggag 254
Query: 935 cttccagcttggtagcatcttttacaattgcttgttcaacagcggcaacatgggtttgca 994
||||||||| |||||||| | || | |||||| |||||||| || || ||||| |||
Sbjct: 253 cttccagctctgtagcatcgtgcacgactgcttg-tcaacagcagcgacgtgggtgcgca 195
Query: 995 caccagag 1002
||||||||
Sbjct: 194 caccagag 187
>gb|BF065145.2|BF065145 HV_CEb0023I02f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0023I02f, mRNA sequence
Length = 567
Score = 73.8 bits (37), Expect = 1e-011
Identities = 79/93 (84%)
Strand = Plus / Minus
Query: 910 gcacctgtaacaacaacaactggagcttccagcttggtagcatcttttacaattgcttgt 969
||||| ||||||||| |||||||||||||||||| |||||||| | || | |||||||
Sbjct: 452 gcacccgtaacaacaccaactggagcttccagctctgtagcatcgtgcacgactgcttgt 393
Query: 970 tcaacagcggcaacatgggtttgcacaccagag 1002
|||||||| || || ||||| |||||||||||
Sbjct: 392 tcaacagcagcgacgtgggtgcgcacaccagag 360
>gb|CV063744.1|CV063744 BNEL92g1 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL92g1 5' similar to similar to Picea
mariana, mRNA sequence
Length = 721
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1118 ctgctgctgctacggtggcggcggcgg 1144
||||||||||||||| |||||||||||
Sbjct: 48 ctgctgctgctacggcggcggcggcgg 22
>gb|BF628984.1|BF628984 HVSMEb0009G23f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0009G23f, mRNA sequence
Length = 794
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1118 ctgctgctgctacggtggcggcggcg 1143
||||||||||| ||||||||||||||
Sbjct: 141 ctgctgctgctgcggtggcggcggcg 116
>gb|BI948540.1|BI948540 HVSMEl0010A09f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0010A09f, mRNA sequence
Length = 811
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1118 ctgctgctgctacggtggcggcggcg 1143
||||||||||| ||||||||||||||
Sbjct: 115 ctgctgctgctgcggtggcggcggcg 90
>gb|BE214332.1|BE214332 HV_CEb0003C07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0003C07f, mRNA sequence
Length = 748
Score = 44.1 bits (22), Expect = 0.011
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1069 cggcgggaggcggcggcggccccggcgcgt 1098
||||||| || |||||||||||||||||||
Sbjct: 164 cggcgggcggaggcggcggccccggcgcgt 135
>gb|BG416974.1|BG416974 HVSMEk0015H12f Hordeum vulgare testa/pericarp EST library HVcDNA0013
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEk0015H12f, mRNA sequence
Length = 879
Score = 44.1 bits (22), Expect = 0.011
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1069 cggcgggaggcggcggcggccccggcgcgt 1098
||||||| || |||||||||||||||||||
Sbjct: 71 cggcgggcggaggcggcggccccggcgcgt 42
>gb|BG300730.2|BG300730 HVSMEb0018C20f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0018C20f, mRNA sequence
Length = 907
Score = 44.1 bits (22), Expect = 0.011
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1069 cggcgggaggcggcggcggccccggcgcgt 1098
||||||| || |||||||||||||||||||
Sbjct: 287 cggcgggcggaggcggcggccccggcgcgt 258
>gb|BG344991.2|BG344991 HVSMEg0018D05f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0018D05f, mRNA sequence
Length = 837
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1118 ctgctgctgctacggtggcggcggcg 1143
||||||||||| ||||||||||||||
Sbjct: 100 ctgctgctgctgcggtggcggcggcg 75
>gb|BF261767.3|BF261767 HV_CEa0002C19f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0002C19f, mRNA sequence
Length = 857
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1118 ctgctgctgctacggtggcggcggcg 1143
||||||||||| ||||||||||||||
Sbjct: 111 ctgctgctgctgcggtggcggcggcg 86
>gb|BQ467252.1|BQ467252 HS03C14r HS Hordeum vulgare subsp. vulgare cDNA clone HS03C14
5-PRIME, mRNA sequence
Length = 354
Score = 44.1 bits (22), Expect = 0.011
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 1069 cggcgggaggcggcggcggccccggcgcgt 1098
||||||| || |||||||||||||||||||
Sbjct: 106 cggcgggcggaggcggcggccccggcgcgt 77
>gb|BQ766740.1|BQ766740 EBro08_SQ007_B01_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_B01 5', mRNA sequence
Length = 685
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1118 ctgctgctgctacggtggcggcggcg 1143
||||||||||| ||||||||||||||
Sbjct: 84 ctgctgctgctgcggtggcggcggcg 59
>gb|CB883342.1|CB883342 HQ01P05w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ01P05
3-PRIME, mRNA sequence
Length = 639
Score = 44.1 bits (22), Expect = 0.011
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1118 ctgctgctgctacggtggcggcggcg 1143
||||||||||| ||||||||||||||
Sbjct: 158 ctgctgctgctgcggtggcggcggcg 133
>gb|BF628172.2|BF628172 HVSMEb0003F07f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0003F07f, mRNA sequence
Length = 520
Score = 42.1 bits (21), Expect = 0.044
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1120 gctgctgctacggtggcggcggcggtggc 1148
||||| ||||||| |||||||||||||||
Sbjct: 411 gctgcggctacggaggcggcggcggtggc 439
>gb|BI955258.1|BI955258 HVSMEm0022D02f Hordeum vulgare green seedling EST library HVcDNA0014
(Blumeria infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEm0022D02f, mRNA sequence
Length = 657
Score = 42.1 bits (21), Expect = 0.044
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1134 ggcggcggcggtggccatgag 1154
|||||||||||||||||||||
Sbjct: 288 ggcggcggcggtggccatgag 308
>gb|BF631576.2|BF631576 HVSMEb0016H15f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0016H15f, mRNA sequence
Length = 838
Score = 42.1 bits (21), Expect = 0.044
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1120 gctgctgctacggtggcggcggcgg 1144
||||| |||||||||||||||||||
Sbjct: 62 gctgcggctacggtggcggcggcgg 38
>gb|BM370915.2|BM370915 EBro04_SQ002_N04_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ002_N04 5', mRNA sequence
Length = 678
Score = 42.1 bits (21), Expect = 0.044
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1134 ggcggcggcggtggccatgag 1154
|||||||||||||||||||||
Sbjct: 144 ggcggcggcggtggccatgag 164
>emb|AJ276357.1|HVU276357 Hordeum vulgare mRNA for dof zinc finger protein (sed gene)
Length = 1555
Score = 42.1 bits (21), Expect = 0.044
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1134 ggcggcggcggtggccatgag 1154
|||||||||||||||||||||
Sbjct: 1315 ggcggcggcggtggccatgag 1335
>emb|AJ312297.1|HVU312297 Hordeum vulgare sed gene for dof zinc finger protein, exons 1-2
Length = 4727
Score = 42.1 bits (21), Expect = 0.044
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1134 ggcggcggcggtggccatgag 1154
|||||||||||||||||||||
Sbjct: 4520 ggcggcggcggtggccatgag 4540
>gb|BE194182.1|BE194182 HVSMEh0084H13f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0084H13f, mRNA sequence
Length = 582
Score = 40.1 bits (20), Expect = 0.17
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1065 cccccggcgggaggcggcggcggc 1088
|||||||||||||||||| |||||
Sbjct: 124 cccccggcgggaggcggctgcggc 101
>gb|BF616876.2|BF616876 HVSMEc0013E22f Hordeum vulgare seedling shoot EST library HVcDNA0003
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEc0013E22f, mRNA sequence
Length = 572
Score = 40.1 bits (20), Expect = 0.17
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1129 acggtggcggcggcggtggccatg 1152
|||||||||||||||| |||||||
Sbjct: 96 acggtggcggcggcggcggccatg 73
>gb|BE454265.2|BE454265 HVSMEh0093H14f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009
(5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEh0093H14f, mRNA sequence
Length = 900
Score = 40.1 bits (20), Expect = 0.17
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1077 ggcggcggcggccccggcgc 1096
||||||||||||||||||||
Sbjct: 215 ggcggcggcggccccggcgc 234
>gb|BI960461.1|BI960461 HVSMEn0024K21f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0024K21f,
mRNA sequence
Length = 635
Score = 40.1 bits (20), Expect = 0.17
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1129 acggtggcggcggcggtggccatg 1152
|||||||||||||||| |||||||
Sbjct: 45 acggtggcggcggcggcggccatg 22
>gb|CA032416.1|CA032416 HX12P13r HX Hordeum vulgare subsp. vulgare cDNA clone HX12P13
5-PRIME, mRNA sequence
Length = 635
Score = 40.1 bits (20), Expect = 0.17
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1117 actgctgctgctacggtggcggcggcgg 1144
|||||||||||| ||| |||||||||||
Sbjct: 49 actgctgctgctgcggcggcggcggcgg 22
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 237,354
Number of Sequences: 312970
Number of extensions: 237354
Number of successful extensions: 84125
Number of sequences better than 0.5: 43
Number of HSP's better than 0.5 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83975
Number of HSP's gapped (non-prelim): 131
length of query: 1252
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1233
effective length of database: 169,188,109
effective search space: 208608938397
effective search space used: 208608938397
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)