BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4005867.2.1
(1967 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI780849.2|BI780849 EBma05_SQ001_C24_R maternal, 12 DPA,... 833 0.0
gb|BI950935.1|BI950935 HVSMEl0023L12f Hordeum vulgare spike... 698 0.0
gb|BM442480.2|BM442480 EBan01_SQ003_E21_R anther, yellow st... 147 2e-033
gb|BQ754059.1|BQ754059 EBca01_SQ002_L07_R carpel, pre-anthe... 88 1e-015
gb|BJ465418.1|BJ465418 BJ465418 K. Sato unpublished cDNA li... 66 5e-009
gb|BQ765469.1|BQ765469 EBro03_SQ007_C09_R root, 3 week, wat... 66 5e-009
gb|BQ661505.1|BQ661505 HM03L14u HM Hordeum vulgare subsp. v... 54 2e-005
gb|CB859122.1|CB859122 HI09G17w HI Hordeum vulgare subsp. v... 54 2e-005
gb|CB859989.1|CB859989 HI12E03w HI Hordeum vulgare subsp. v... 54 2e-005
gb|CK122193.1|CK122193 BES1824101p15 BES1824 Hordeum vulgar... 54 2e-005
gb|CK122985.1|CK122985 BES1824101k13 BES1824 Hordeum vulgar... 54 2e-005
gb|AV914255.1|AV914255 AV914255 K. Sato unpublished cDNA li... 42 0.069
gb|AV914270.1|AV914270 AV914270 K. Sato unpublished cDNA li... 42 0.069
gb|BI778939.2|BI778939 EBro01_SQ002_C18_R root, 3 week, hyd... 42 0.069
gb|BE422260.1|BE422260 HWM022cC.01r ITEC HWM Barley Leaf Li... 40 0.27
gb|AL506839.1|AL506839 AL506839 Hordeum vulgare Barke devel... 40 0.27
gb|AL508327.1|AL508327 AL508327 Hordeum vulgare Barke devel... 40 0.27
gb|BF621774.2|BF621774 HVSMEa0012J17f Hordeum vulgare seedl... 40 0.27
gb|BE231135.1|BE231135 HVSMEg0016P21f Hordeum vulgare pre-a... 40 0.27
gb|BF255094.1|BF255094 HVSMEf0005O23f Hordeum vulgare seedl... 40 0.27
gb|BG300617.1|BG300617 HVSMEb0017L10f Hordeum vulgare seedl... 40 0.27
gb|BF620695.2|BF620695 HVSMEc0020J18f Hordeum vulgare seedl... 40 0.27
gb|BI956621.1|BI956621 HVSMEn0004H20f Hordeum vulgare rachi... 40 0.27
gb|BF264836.2|BF264836 HV_CEa0010I07f Hordeum vulgare seedl... 40 0.27
gb|BI958337.1|BI958337 HVSMEn0014H14f Hordeum vulgare rachi... 40 0.27
gb|BI958411.1|BI958411 HVSMEn0014N24f Hordeum vulgare rachi... 40 0.27
gb|BF254899.3|BF254899 HVSMEf0005F18f Hordeum vulgare seedl... 40 0.27
gb|BF254942.3|BF254942 HVSMEf0005H18f Hordeum vulgare seedl... 40 0.27
gb|BE195309.3|BE195309 HVSMEh0088N23f Hordeum vulgare 5-45 ... 40 0.27
gb|AV915687.1|AV915687 AV915687 K. Sato unpublished cDNA li... 40 0.27
gb|AV933775.1|AV933775 AV933775 K. Sato unpublished cDNA li... 40 0.27
gb|AV933965.1|AV933965 AV933965 K. Sato unpublished cDNA li... 40 0.27
gb|AV934451.1|AV934451 AV934451 K. Sato unpublished cDNA li... 40 0.27
gb|BJ468665.1|BJ468665 BJ468665 K. Sato unpublished cDNA li... 40 0.27
gb|BJ474438.1|BJ474438 BJ474438 K. Sato unpublished cDNA li... 40 0.27
gb|BM442638.2|BM442638 EBan01_SQ003_L22_R anther, yellow st... 40 0.27
gb|BM374246.2|BM374246 EBpi03_SQ003_B10_R pistil, 4 DPA, no... 40 0.27
gb|BQ763597.1|BQ763597 EBro02_SQ008_K22_R root, 3 week, hyd... 40 0.27
gb|CA029858.1|CA029858 HX05G15r HX Hordeum vulgare subsp. v... 40 0.27
gb|BJ547213.1|BJ547213 BJ547213 K. Sato unpublished cDNA li... 40 0.27
gb|BJ547554.1|BJ547554 BJ547554 K. Sato unpublished cDNA li... 40 0.27
gb|CD662439.1|CD662439 UCRHV18_01cb05_b1 Drought-stressed D... 40 0.27
gb|CK124563.1|CK124563 BES1824109i20 BES1824 Hordeum vulgar... 40 0.27
gb|CK125826.1|CK125826 BES1824111A1b02 BES1824 Hordeum vulg... 40 0.27
>gb|BI780849.2|BI780849 EBma05_SQ001_C24_R maternal, 12 DPA, no treatment, cv Optic, EBma05
Hordeum vulgare subsp. vulgare cDNA clone
EBma05_SQ001_C24 5', mRNA sequence
Length = 602
Score = 833 bits (420), Expect = 0.0
Identities = 555/600 (92%)
Strand = Plus / Plus
Query: 934 aagcaaagccgcgtgaccggccgcaagagcttcgccgacggcatcaccaccatgaagacc 993
||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 3 aagcagagccgcgtcaccggcagcaagagcttcgccgacggcatcaccaccatgaagacc 62
Query: 994 gccaccttctccgtcgaggcgtccgggttcatctgcaagaacatggggttccacaacacg 1053
|||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 63 gccaccttctccattgaggcggccgggttcatctgcaagaacatggggttccacaacacg 122
Query: 1054 gccggcgcggagcggcaccaggcggtggcgctccgggtgcagggggacctcgcggcgttc 1113
|| ||||||||| ||||||||||||||||| |||||||||| ||||| |||| |||
Sbjct: 123 gcgggcgcggagaaacaccaggcggtggcgctgagggtgcagggcgacctgtcggccttc 182
Query: 1114 tacaactgccggttcgacgcgttccaggacacgctgtacgtgcacgcgcggcggcagttc 1173
| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 183 ttcaactgccggtttgacgcgttccaggacacgctgtacgtgcacgcccggcggcagttc 242
Query: 1174 ttccgcaactgcgtggtctccggcaccatcgacttcatcttcggcaactcggcggcggtg 1233
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 243 ttccgcaactgcgtcatctccggcaccatcgacttcatcttcggcaactcggcggccgtg 302
Query: 1234 ttccagaactgcctcatcatcacgcggcggcccatggacaaccagcagaactcggtgacg 1293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ttccagaactgcctcatcatcacgcggcggcccatggacaaccagcagaactcggtgacc 362
Query: 1294 gcgcacgggcgcaccgaccccaacatgaagtccgggctcgtcatccagaactgccgcctg 1353
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 363 gcgcacgggcgcacggaccccaacatgaagtccgggctggtcatccagaactgccgcctg 422
Query: 1354 gtgcccgaccagaagctgttcccggaccgcttcaagatcccctcgtacctgggccgcccc 1413
||||| ||||||||||| ||| |||||||||||| ||||| || ||||||||| | ||
Sbjct: 423 gtgccggaccagaagctcttcgtggaccgcttcaaaatcccgtcctacctgggcaggccg 482
Query: 1414 tggaaggagttctcgcgcctcgtcatcatggagagcaccatcgccgacttcgtcaagcca 1473
||||||||||||||||| || ||||||||||||||| |||||||||||| |||||||
Sbjct: 483 tggaaggagttctcgcggctggtcatcatggagagccagatcgccgacttcatcaagccc 542
Query: 1474 gaggggtacatgccctggaacggcgacttcgccctcaagacgctctactacgccgagtac 1533
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 543 gaggggtacatgccgtggaacggcgacttcgggctcaagacgctctactacgccgagtac 602
>gb|BI950935.1|BI950935 HVSMEl0023L12f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium
infected) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEl0023L12f, mRNA sequence
Length = 536
Score = 698 bits (352), Expect = 0.0
Identities = 484/528 (91%)
Strand = Plus / Plus
Query: 1088 gggtgcagggggacctcgcggcgttctacaactgccggttcgacgcgttccaggacacgc 1147
|||||||||| ||||| |||| |||| |||||||||||| |||||||||||||||||||
Sbjct: 6 gggtgcagggcgacctgtcggccttcttcaactgccggtttgacgcgttccaggacacgc 65
Query: 1148 tgtacgtgcacgcgcggcggcagttcttccgcaactgcgtggtctccggcaccatcgact 1207
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 66 tgtacgtgcacgcccggcggcagttcttccgcaactgcgtcatctccggcaccatcgact 125
Query: 1208 tcatcttcggcaactcggcggcggtgttccagaactgcctcatcatcacgcggcggccca 1267
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 126 tcatcttcggcaactcggcggccgtgttccagaactgcctcatcatcacgcggcggccca 185
Query: 1268 tggacaaccagcagaactcggtgacggcgcacgggcgcaccgaccccaacatgaagtccg 1327
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 186 tggacaaccagcagaactcggtgaccgcgcacgggcgcacggaccccaacatgaagtccg 245
Query: 1328 ggctcgtcatccagaactgccgcctggtgcccgaccagaagctgttcccggaccgcttca 1387
|||| |||||||||||||||||||||||||| ||||||||||| ||| |||||||||||
Sbjct: 246 ggctggtcatccagaactgccgcctggtgccggaccagaagctcttcgtggaccgcttca 305
Query: 1388 agatcccctcgtacctgggccgcccctggaaggagttctcgcgcctcgtcatcatggaga 1447
| ||||| || ||||||||| | || ||||||||||||||||| || |||||||||||||
Sbjct: 306 aaatcccgtcctacctgggcaggccgtggaaggagttctcgcggctggtcatcatggaga 365
Query: 1448 gcaccatcgccgacttcgtcaagccagaggggtacatgccctggaacggcgacttcgccc 1507
|| |||||||||||| ||||||| |||||||||||||| |||||||||||||||| |
Sbjct: 366 gccagatcgccgacttcatcaagcccgaggggtacatgccgtggaacggcgacttcgggc 425
Query: 1508 tcaagacgctctactacgccgagtacaacaaccgcgggcccggcgccggcaccagcaaga 1567
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 426 tcaagacgctctactacgccgagtacggcaaccgcggccccggcgccggcaccagcaaga 485
Query: 1568 gggtcaactggcccggcttccacgtcatcggacggaaggaggccgagc 1615
|||||| |||||| ||||||| ||||||| || ||||||||||||
Sbjct: 486 gggtcacctggccgggcttccgagtcatcgccaggcaggaggccgagc 533
>gb|BM442480.2|BM442480 EBan01_SQ003_E21_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_E21 5', mRNA sequence
Length = 230
Score = 147 bits (74), Expect = 2e-033
Identities = 140/162 (86%)
Strand = Plus / Plus
Query: 146 tccggcaagtcggtcaagtccctgtgcgcgcccaccctgtacaaggagtcgtgcgagaag 205
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 17 tccggcaagtcggtcaagtctctgtgcgcgcccacgctgtacaaggagtcgtgcgagaag 76
Query: 206 acgttgtcccaggccaccaatggcaccgagaaccccaaggaggtgttccacagcgtggcc 265
|| | || |||| ||||||||||||||||||||||||| |||||| || ||| |||
Sbjct: 77 accctcacctcggcctccaatggcaccgagaaccccaaggacgtgttcgccaccgtcgcc 136
Query: 266 aaggtggcgctggagtcggtccagacggcggtcgagcagtcc 307
||| |||| |||||||| || || ||||||| |||| ||||
Sbjct: 137 aagtcggcgatggagtcgatcaagtcggcggtggagcggtcc 178
>gb|BQ754059.1|BQ754059 EBca01_SQ002_L07_R carpel, pre-anthesis, no treatment, cv Optic,
EBca01 Hordeum vulgare subsp. vulgare cDNA clone
EBca01_SQ002_L07 5', mRNA sequence
Length = 372
Score = 87.7 bits (44), Expect = 1e-015
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 1137 ccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtggtctccgg 1196
||||||||||||||||| |||| ||| || ||||||| |||| ||||| ||| ||||
Sbjct: 112 ccaggacacgctgtacgcgcactcgctccgccagttctaccgcgactgccgcgtcgccgg 171
Query: 1197 caccatcgacttcatcttcggcaactcggcggcggtgttccagaactgcctc 1248
|||| |||||||| ||||||||||| | || || ||||||||||||||||||
Sbjct: 172 caccgtcgacttcgtcttcggcaacgccgccgccgtgttccagaactgcctc 223
>gb|BJ465418.1|BJ465418 BJ465418 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39m02 5', mRNA sequence
Length = 528
Score = 65.9 bits (33), Expect = 5e-009
Identities = 90/109 (82%)
Strand = Plus / Plus
Query: 1137 ccaggacacgctgtacgtgcacgcgcggcggcagttcttccgcaactgcgtggtctccgg 1196
||||||||| || ||||||||| | | || |||||||||||| | |||| ||| |||
Sbjct: 306 ccaggacaccctctacgtgcactccctccgtcagttcttccgcgagtgcgacatctacgg 365
Query: 1197 caccatcgacttcatcttcggcaactcggcggcggtgttccagaactgc 1245
||||||||||||| ||||||||||||| || || ||| |||||| ||||
Sbjct: 366 caccatcgacttcgtcttcggcaactccgccgccgtgctccagagctgc 414
Score = 42.1 bits (21), Expect = 0.069
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1068 gcaccaggcggtggcgctccg 1088
|||||||||||||||||||||
Sbjct: 237 gcaccaggcggtggcgctccg 257
>gb|BQ765469.1|BQ765469 EBro03_SQ007_C09_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ007_C09 5', mRNA sequence
Length = 417
Score = 65.9 bits (33), Expect = 5e-009
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 1483 atgccctggaacggcgacttcgccctcaagacgctctactacgccgagtacaacaac 1539
||||| |||| |||||||||||| |||| ||||||||||||||||||||| |||||
Sbjct: 71 atgccgtggagcggcgacttcgcgctcagcacgctctactacgccgagtacgacaac 127
>gb|BQ661505.1|BQ661505 HM03L14u HM Hordeum vulgare subsp. vulgare cDNA clone HM03L14
3-PRIME, mRNA sequence
Length = 298
Score = 54.0 bits (27), Expect = 2e-005
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 1483 atgccctggaacggcgacttcgccctcaagacgctctactacgccgagtacaacaaccgc 1542
||||| |||| |||||||||||| ||| | ||||||||||||| ||||||| || | |
Sbjct: 293 atgccatggagcggcgacttcgcgctcgacacgctctactacggcgagtacggcagcgcc 234
Query: 1543 gggcccggcgccggc 1557
|| ||||||||||||
Sbjct: 233 ggccccggcgccggc 219
>gb|CB859122.1|CB859122 HI09G17w HI Hordeum vulgare subsp. vulgare cDNA clone HI09G17
3-PRIME, mRNA sequence
Length = 565
Score = 54.0 bits (27), Expect = 2e-005
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 1483 atgccctggaacggcgacttcgccctcaagacgctctactacgccgagtacaacaaccgc 1542
||||| |||| |||||||||||| ||| | ||||||||||||| ||||||| || | |
Sbjct: 292 atgccatggagcggcgacttcgcgctcgacacgctctactacggcgagtacggcagcgcc 233
Query: 1543 gggcccggcgccggc 1557
|| ||||||||||||
Sbjct: 232 ggccccggcgccggc 218
>gb|CB859989.1|CB859989 HI12E03w HI Hordeum vulgare subsp. vulgare cDNA clone HI12E03
3-PRIME, mRNA sequence
Length = 521
Score = 54.0 bits (27), Expect = 2e-005
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 1483 atgccctggaacggcgacttcgccctcaagacgctctactacgccgagtacaacaaccgc 1542
||||| |||| |||||||||||| ||| | ||||||||||||| ||||||| || | |
Sbjct: 293 atgccatggagcggcgacttcgcgctcgacacgctctactacggcgagtacggcagcgcc 234
Query: 1543 gggcccggcgccggc 1557
|| ||||||||||||
Sbjct: 233 ggccccggcgccggc 219
>gb|CK122193.1|CK122193 BES1824101p15 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P151 5-PRIME, mRNA sequence
Length = 641
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1204 gacttcatcttcggcaactcggcggcggtgttcca 1238
|||||||||||||||||||||||||| ||| ||||
Sbjct: 373 gacttcatcttcggcaactcggcggccgtgctcca 407
>gb|CK122985.1|CK122985 BES1824101k13 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010K131 5-PRIME, mRNA sequence
Length = 611
Score = 54.0 bits (27), Expect = 2e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1204 gacttcatcttcggcaactcggcggcggtgttcca 1238
|||||||||||||||||||||||||| ||| ||||
Sbjct: 373 gacttcatcttcggcaactcggcggccgtgctcca 407
>gb|AV914255.1|AV914255 AV914255 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags5g01 5', mRNA sequence
Length = 269
Score = 42.1 bits (21), Expect = 0.069
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1068 gcaccaggcggtggcgctccg 1088
|||||||||||||||||||||
Sbjct: 228 gcaccaggcggtggcgctccg 248
>gb|AV914270.1|AV914270 AV914270 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags5h01 5', mRNA sequence
Length = 250
Score = 42.1 bits (21), Expect = 0.069
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1068 gcaccaggcggtggcgctccg 1088
|||||||||||||||||||||
Sbjct: 211 gcaccaggcggtggcgctccg 231
>gb|BI778939.2|BI778939 EBro01_SQ002_C18_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ002_C18 5', mRNA sequence
Length = 481
Score = 42.1 bits (21), Expect = 0.069
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 366 caagaagctcctggaggacgc 386
|||||||||||||||||||||
Sbjct: 315 caagaagctcctggaggacgc 335
>gb|BE422260.1|BE422260 HWM022cC.01r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM022cC.01, mRNA sequence
Length = 1239
Score = 40.1 bits (20), Expect = 0.27
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 1500 cttcgccctcaagacgctctactacgccgagtacaacaaccgcgggcccggcgccggcac 1559
|||||| ||| | ||||||||||||| ||||||| | ||| || ||||||||||||||
Sbjct: 221 cttcgcgctcgacacgctctactacggcgagtaccagaacacgggacccggcgccggcac 280
>gb|AL506839.1|AL506839 AL506839 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY04G09T 5',
mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 ccggcaagaaggccggcgac 108
||||||||||||||||||||
Sbjct: 210 ccggcaagaaggccggcgac 229
>gb|AL508327.1|AL508327 AL508327 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY08G24V 5',
mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 ccggcaagaaggccggcgac 108
||||||||||||||||||||
Sbjct: 194 ccggcaagaaggccggcgac 213
>gb|BF621774.2|BF621774 HVSMEa0012J17f Hordeum vulgare seedling shoot EST library HVcDNA0001
(Cold stress) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEa0012J17f, mRNA sequence
Length = 866
Score = 40.1 bits (20), Expect = 0.27
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1735 gtgaggtggcacacacgctcgcgcgcgc 1762
||||||||||||||||| ||| ||||||
Sbjct: 775 gtgaggtggcacacacgatcgggcgcgc 748
>gb|BE231135.1|BE231135 HVSMEg0016P21f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0016P21f, mRNA sequence
Length = 876
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 ccggcaagaaggccggcgac 108
||||||||||||||||||||
Sbjct: 219 ccggcaagaaggccggcgac 238
>gb|BF255094.1|BF255094 HVSMEf0005O23f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0005O23f, mRNA sequence
Length = 657
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 366 caagaagctcctggaggacg 385
||||||||||||||||||||
Sbjct: 384 caagaagctcctggaggacg 403
>gb|BG300617.1|BG300617 HVSMEb0017L10f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017L10f, mRNA sequence
Length = 895
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 ccggcaagaaggccggcgac 108
||||||||||||||||||||
Sbjct: 208 ccggcaagaaggccggcgac 227
>gb|BF620695.2|BF620695 HVSMEc0020J18f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0020J18f, mRNA sequence
Length = 886
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 ccggcaagaaggccggcgac 108
||||||||||||||||||||
Sbjct: 208 ccggcaagaaggccggcgac 227
>gb|BI956621.1|BI956621 HVSMEn0004H20f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004H20f, mRNA sequence
Length = 849
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 366 caagaagctcctggaggacg 385
||||||||||||||||||||
Sbjct: 327 caagaagctcctggaggacg 346
>gb|BF264836.2|BF264836 HV_CEa0010I07f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0010I07f, mRNA sequence
Length = 879
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 ccggcaagaaggccggcgac 108
||||||||||||||||||||
Sbjct: 207 ccggcaagaaggccggcgac 226
>gb|BI958337.1|BI958337 HVSMEn0014H14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014H14f, mRNA sequence
Length = 641
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 ccggcaagaaggccggcgac 108
||||||||||||||||||||
Sbjct: 208 ccggcaagaaggccggcgac 227
>gb|BI958411.1|BI958411 HVSMEn0014N24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014N24f, mRNA sequence
Length = 658
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 ccggcaagaaggccggcgac 108
||||||||||||||||||||
Sbjct: 209 ccggcaagaaggccggcgac 228
>gb|BF254899.3|BF254899 HVSMEf0005F18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0005F18f, mRNA sequence
Length = 593
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 366 caagaagctcctggaggacg 385
||||||||||||||||||||
Sbjct: 320 caagaagctcctggaggacg 339
>gb|BF254942.3|BF254942 HVSMEf0005H18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0005H18f, mRNA sequence
Length = 594
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 366 caagaagctcctggaggacg 385
||||||||||||||||||||
Sbjct: 320 caagaagctcctggaggacg 339
>gb|BE195309.3|BE195309 HVSMEh0088N23f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0088N23f, mRNA sequence
Length = 800
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 ccggcaagaaggccggcgac 108
||||||||||||||||||||
Sbjct: 212 ccggcaagaaggccggcgac 231
>gb|AV915687.1|AV915687 AV915687 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags15j16 5', mRNA sequence
Length = 759
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 ccggcaagaaggccggcgac 108
||||||||||||||||||||
Sbjct: 205 ccggcaagaaggccggcgac 224
>gb|AV933775.1|AV933775 AV933775 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal8o04 5', mRNA sequence
Length = 636
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 ccggcaagaaggccggcgac 108
||||||||||||||||||||
Sbjct: 202 ccggcaagaaggccggcgac 221
>gb|AV933965.1|AV933965 AV933965 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baalh22 5', mRNA sequence
Length = 735
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 ccggcaagaaggccggcgac 108
||||||||||||||||||||
Sbjct: 195 ccggcaagaaggccggcgac 214
>gb|AV934451.1|AV934451 AV934451 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal9d24 5', mRNA sequence
Length = 499
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 ccggcaagaaggccggcgac 108
||||||||||||||||||||
Sbjct: 201 ccggcaagaaggccggcgac 220
>gb|BJ468665.1|BJ468665 BJ468665 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39m02 3', mRNA sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.27
Identities = 50/60 (83%)
Strand = Plus / Minus
Query: 1500 cttcgccctcaagacgctctactacgccgagtacaacaaccgcgggcccggcgccggcac 1559
|||||| ||| | ||||||||||||| ||||||| | ||| || ||||||||||||||
Sbjct: 521 cttcgcgctcgacacgctctactacggcgagtaccagaacacgggacccggcgccggcac 462
>gb|BJ474438.1|BJ474438 BJ474438 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal13m19 3', mRNA sequence
Length = 505
Score = 40.1 bits (20), Expect = 0.27
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1744 cacacacgctcgcgcgcgcgcacacaca 1771
||||||| | ||||||||||||||||||
Sbjct: 134 cacacacacgcgcgcgcgcgcacacaca 161
>gb|BM442638.2|BM442638 EBan01_SQ003_L22_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_L22 5', mRNA sequence
Length = 212
Score = 40.1 bits (20), Expect = 0.27
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1195 ggcaccatcgacttcatcttcggc 1218
|||| |||||||||||||||||||
Sbjct: 28 ggcaacatcgacttcatcttcggc 51
>gb|BM374246.2|BM374246 EBpi03_SQ003_B10_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ003_B10 5', mRNA sequence
Length = 449
Score = 40.1 bits (20), Expect = 0.27
Identities = 50/60 (83%)
Strand = Plus / Plus
Query: 1500 cttcgccctcaagacgctctactacgccgagtacaacaaccgcgggcccggcgccggcac 1559
|||||| ||| | ||||||||||||| ||||||| | ||| || ||||||||||||||
Sbjct: 82 cttcgcgctcgacacgctctactacggcgagtaccagaacacgggacccggcgccggcac 141
>gb|BQ763597.1|BQ763597 EBro02_SQ008_K22_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ008_K22 5', mRNA sequence
Length = 702
Score = 40.1 bits (20), Expect = 0.27
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 787 cagttcaagagcatccagcaggcc 810
|||||||||| |||||||||||||
Sbjct: 409 cagttcaagatcatccagcaggcc 432
>gb|CA029858.1|CA029858 HX05G15r HX Hordeum vulgare subsp. vulgare cDNA clone HX05G15
5-PRIME, mRNA sequence
Length = 638
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1202 tcgacttcatcttcggcaac 1221
||||||||||||||||||||
Sbjct: 149 tcgacttcatcttcggcaac 168
>gb|BJ547213.1|BJ547213 BJ547213 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal25j06 5', mRNA sequence
Length = 707
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 ccggcaagaaggccggcgac 108
||||||||||||||||||||
Sbjct: 160 ccggcaagaaggccggcgac 179
>gb|BJ547554.1|BJ547554 BJ547554 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal31l05 5', mRNA sequence
Length = 739
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 ccggcaagaaggccggcgac 108
||||||||||||||||||||
Sbjct: 193 ccggcaagaaggccggcgac 212
>gb|CD662439.1|CD662439 UCRHV18_01cb05_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_01cb05, mRNA sequence
Length = 747
Score = 40.1 bits (20), Expect = 0.27
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1744 cacacacgctcgcgcgcgcgcacacaca 1771
||||||| | ||||||||||||||||||
Sbjct: 113 cacacacacgcgcgcgcgcgcacacaca 140
>gb|CK124563.1|CK124563 BES1824109i20 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010I209 5-PRIME, mRNA sequence
Length = 522
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 ccggcaagaaggccggcgac 108
||||||||||||||||||||
Sbjct: 225 ccggcaagaaggccggcgac 244
>gb|CK125826.1|CK125826 BES1824111A1b02 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B0211 5-PRIME, mRNA sequence
Length = 594
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 89 ccggcaagaaggccggcgac 108
||||||||||||||||||||
Sbjct: 258 ccggcaagaaggccggcgac 277
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 303,020
Number of Sequences: 312970
Number of extensions: 303020
Number of successful extensions: 83696
Number of sequences better than 0.5: 44
Number of HSP's better than 0.5 without gapping: 41
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 83612
Number of HSP's gapped (non-prelim): 77
length of query: 1967
length of database: 175,134,539
effective HSP length: 20
effective length of query: 1947
effective length of database: 168,875,139
effective search space: 328799895633
effective search space used: 328799895633
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)