BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3871923.2.1
(1030 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE216598.1|BE216598 HV_CEb0010O18f Hordeum vulgare seedl... 704 0.0
gb|BQ468452.1|BQ468452 HM01E18T HM Hordeum vulgare subsp. v... 609 e-173
gb|BJ459695.1|BJ459695 BJ459695 K. Sato unpublished cDNA li... 492 e-137
gb|BJ456765.1|BJ456765 BJ456765 K. Sato unpublished cDNA li... 482 e-134
gb|CA015715.1|CA015715 HV12G12u HV Hordeum vulgare subsp. v... 381 e-104
gb|BJ449299.1|BJ449299 BJ449299 K. Sato unpublished cDNA li... 369 e-100
gb|BQ468695.1|BQ468695 HM02A04r HM Hordeum vulgare subsp. v... 349 1e-094
gb|BJ452141.1|BJ452141 BJ452141 K. Sato unpublished cDNA li... 307 4e-082
gb|BQ660965.1|BQ660965 HM01E18w HM Hordeum vulgare subsp. v... 242 2e-062
gb|BE216587.2|BE216587 HV_CEb0010O06f Hordeum vulgare seedl... 220 7e-056
gb|CB879914.1|CB879914 HP10M02T HP Hordeum vulgare subsp. v... 200 7e-050
gb|BQ465136.1|BQ465136 HU02M04r HU Hordeum vulgare subsp. v... 192 2e-047
gb|BQ464884.1|BQ464884 HU02A16r HU Hordeum vulgare subsp. v... 149 2e-034
gb|CA008593.1|CA008593 HU11H08r HU Hordeum vulgare subsp. v... 145 3e-033
gb|CD663714.1|CD663714 UCRHV18_06bf08_b1 Drought-stressed D... 82 4e-014
gb|BG343105.2|BG343105 HVSMEg0002D22f Hordeum vulgare pre-a... 80 2e-013
gb|BM374207.2|BM374207 EBma03_SQ003_P10_R maternal, 8 DPA, ... 56 2e-006
gb|BI777732.2|BI777732 EBro08_SQ001_L03_R root, 3 week, dro... 46 0.002
gb|BE195878.2|BE195878 HVSMEh0090L15f Hordeum vulgare 5-45 ... 42 0.036
gb|AV913668.1|AV913668 AV913668 K. Sato unpublished cDNA li... 42 0.036
gb|AV918971.1|AV918971 AV918971 K. Sato unpublished cDNA li... 42 0.036
gb|BJ467651.1|BJ467651 BJ467651 K. Sato unpublished cDNA li... 42 0.036
gb|BQ664000.1|BQ664000 HU04P15u HU Hordeum vulgare subsp. v... 42 0.036
gb|BM377208.2|BM377208 EBem05_SQ004_H02_R embryo, 14 DPA, n... 42 0.036
gb|BM375430.2|BM375430 EBem06_SQ003_F05_R embryo, 21 DPA, n... 42 0.036
gb|BM375469.2|BM375469 EBem06_SQ003_H05_R embryo, 21 DPA, n... 42 0.036
gb|BU985790.1|BU985790 HF08K04r HF Hordeum vulgare subsp. v... 42 0.036
gb|CA017295.1|CA017295 HV12P03u HV Hordeum vulgare subsp. v... 42 0.036
gb|CK123146.1|CK123146 BES1824102e10 BES1824 Hordeum vulgar... 42 0.036
>gb|BE216598.1|BE216598 HV_CEb0010O18f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0010O18f, mRNA sequence
Length = 725
Score = 704 bits (355), Expect = 0.0
Identities = 615/702 (87%)
Strand = Plus / Plus
Query: 98 ggcacgatctacctggacgtcggcaccaaatacacatccatcctggccagggctgcctgc 157
||||| ||||||||||| || |||||||||||||||||||||||||||||||| || ||
Sbjct: 22 ggcacaatctacctggatgttggcaccaaatacacatccatcctggccagggcagcatgt 81
Query: 158 tccgcgttcgtctttgggttcgttacgttcatgtccattggaggattcccttcgttcgtt 217
| || ||||||||||| ||||| || |||||||||||||||||||||||||| |||||
Sbjct: 82 gcagcattcgtctttggattcgtcaccttcatgtccattggaggattcccttcattcgtg 141
Query: 218 gaagaaatgaaggtcttccagcgggaacggctgaacgggcactacggtgtcgcggcgttt 277
|||||||||||||||||||||||||| |||||||| |||||||||||||| || || |||
Sbjct: 142 gaagaaatgaaggtcttccagcgggagcggctgaatgggcactacggtgttgcagcattt 201
Query: 278 gtcatcagcaacaccatctcagccacgccgttcctgattctgatatgcttcttgtcggga 337
||||| |||||||||||| || ||| |||||| | |||||||||||| |||| ||
Sbjct: 202 gtcattgccaacaccatctcggctctgccattcctggtcctgatatgcttcctgtcaggg 261
Query: 338 accatatgctacttcatggtgcgcctccatcctggcttcgagcactacatcttcttcgtc 397
|| |||||||||||||||||||||| |||||||| ||| ||||||||||||||||||
Sbjct: 262 acagtatgctacttcatggtgcgccttcatcctggtttctcacactacatcttcttcgtc 321
Query: 398 ttgaacctgtacgccagcgttacggtggtcgagagcttgatgatggcgattgccagtgtc 457
|||||||| |||||||| || || ||||| ||||||||||||||||| ||||| ||||||
Sbjct: 322 ttgaacctctacgccagtgtcaccgtggttgagagcttgatgatggccattgcaagtgtc 381
Query: 458 attccaaatttcctcatgggtatcatcataggggccgggattcagggaatattcatgctg 517
|| || |||||||||||||| ||||||||||| || || ||||||||||||||||||||
Sbjct: 382 atacccaatttcctcatgggcatcatcataggagctggaattcagggaatattcatgctt 441
Query: 518 gtctctggctacttcagacttccatacgacatcccgaagcccttttggagataccccatg 577
|||||||| |||||||||||||| || |||||||| ||| || |||||||||||||||
Sbjct: 442 gtctctggatacttcagacttccgtatgacatccccaaggttttctggagataccccatg 501
Query: 578 cagtacatcagcttccactactgggcactgcagggccagtgccagaacgacatgaagggc 637
||||||||||||||||| ||||||||||| |||||||| |||||||| |||||| | ||
Sbjct: 502 cagtacatcagcttccattactgggcactacagggccaatgccagaatgacatggacggt 561
Query: 638 ctcgcggtcgacaaccaggacccggaccaacccaagatccccggggacttcatcctcaag 697
||| |||||||||| |||||||||| || |||||||||||| | ||||| || |||
Sbjct: 562 ctcctattcgacaaccaatacccggaccagccgaagatccccgggcagttcatactgaag 621
Query: 698 tacatcttccagatcaacgtggaccgttccaagtggatcgacctgtcggtcattttcagc 757
||||||||||||||||||||| |||| || |||||||||||||||||||||| ||||||
Sbjct: 622 tacatcttccagatcaacgtgcaccggtcanagtggatcgacctgtcggtcatcttcagc 681
Query: 758 atgatcttcatctaccgcatcctcttcttcctcatgatcaag 799
|||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 682 atgatcttcatctaccgcatgctcttcttcatcatgatcaag 723
>gb|BQ468452.1|BQ468452 HM01E18T HM Hordeum vulgare subsp. vulgare cDNA clone HM01E18
5-PRIME, mRNA sequence
Length = 620
Score = 609 bits (307), Expect = e-173
Identities = 535/611 (87%)
Strand = Plus / Plus
Query: 202 attcccttcgttcgttgaagaaatgaaggtcttccagcgggaacggctgaacgggcacta 261
||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 attcccttcattcgtggaagaaatgaaggtcttccagcgggaacggctgaatgggcacta 60
Query: 262 cggtgtcgcggcgtttgtcatcagcaacaccatctcagccacgccgttcctgattctgat 321
|||||| || || |||||||| |||||||||||| || ||| |||||| | |||||
Sbjct: 61 cggtgttgcagcatttgtcattgccaacaccatctcggctctgccattcctggtcctgat 120
Query: 322 atgcttcttgtcgggaaccatatgctacttcatggtgcgcctccatcctggcttcgagca 381
||||||| |||| || || |||||||||||||||||||||| |||||||| ||| ||
Sbjct: 121 atgcttcctgtcagggacagtatgctacttcatggtgcgccttcatcctggtttctcaca 180
Query: 382 ctacatcttcttcgtcttgaacctgtacgccagcgttacggtggtcgagagcttgatgat 441
|||||||||||||||||||||||| |||||||| || || ||||| ||||||||||||||
Sbjct: 181 ctacatcttcttcgtcttgaacctctacgccagtgtcaccgtggttgagagcttgatgat 240
Query: 442 ggcgattgccagtgtcattccaaatttcctcatgggtatcatcataggggccgggattca 501
||| ||||| |||||||| || |||||||||||||| ||||||||||| || || |||||
Sbjct: 241 ggccattgcaagtgtcatacccaatttcctcatgggcatcatcataggagctggaattca 300
Query: 502 gggaatattcatgctggtctctggctacttcagacttccatacgacatcccgaagccctt 561
||||||||||||||| |||||||| |||||||||||||| || |||||||| ||| ||
Sbjct: 301 gggaatattcatgcttgtctctggatacttcagacttccgtatgacatccccaaggtttt 360
Query: 562 ttggagataccccatgcagtacatcagcttccactactgggcactgcagggccagtgcca 621
|||||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct: 361 ctggagatatcccatgcagtacatcagcttccattactgggcactacagggccaatgcca 420
Query: 622 gaacgacatgaagggcctcgcggtcgacaaccaggacccggaccaacccaagatccccgg 681
||| |||||| | || ||| |||||||||| |||||||||| || |||||||||||
Sbjct: 421 gaatgacatggacggtctcctattcgacaaccaatacccggaccagccgaagatccccgg 480
Query: 682 ggacttcatcctcaagtacatcttccagatcaacgtggaccgttccaagtggatcgacct 741
| | ||||| || |||||||||||||||||||||||| |||| || ||||||||||||||
Sbjct: 481 gcagttcatactgaagtacatcttccagatcaacgtgcaccggtcaaagtggatcgacct 540
Query: 742 gtcggtcattttcagcatgatcttcatctaccgcatcctcttcttcctcatgatcaagat 801
||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||| |
Sbjct: 541 gtcggtcatcttcagcatgatcttcatctaccgcatgctcttcttcatcatgatcaaggt 600
Query: 802 caacgaggacg 812
||||||||||
Sbjct: 601 gaacgaggacg 611
>gb|BJ459695.1|BJ459695 BJ459695 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak37o18 3', mRNA sequence
Length = 635
Score = 492 bits (248), Expect = e-137
Identities = 453/522 (86%), Gaps = 6/522 (1%)
Strand = Plus / Minus
Query: 407 tacgccagcgttacggtggtcgagagcttgatgatggcgattgccagtgtcattccaaat 466
|||||||| || || ||||| ||||||||||||||||| ||||| |||||||| || |||
Sbjct: 633 tacgccagtgtcaccgtggttgagagcttgatgatggccattgcaagtgtcatacccaat 574
Query: 467 ttcctcatgggtatcatcataggggccgggattcagggaatattcatgctggtctctggc 526
||||||||||| ||||||||||| || || |||||||||||||||||||| ||||||||
Sbjct: 573 ttcctcatgggcatcatcataggagctggaattcagggaatattcatgcttgtctctgga 514
Query: 527 tacttcagacttccatacgacatcccgaagcccttttggagataccccatgcagtacatc 586
|||||||||||||| || |||||||| ||| || |||||||| |||||||||||||||
Sbjct: 513 tacttcagacttccgtatgacatccccaaggttttctggagatatcccatgcagtacatc 454
Query: 587 agcttccactactgggcactgcagggccagtgccagaacgacatgaagggcctcgcggtc 646
|||||||| ||||||||||| |||||||| |||||||| |||||| | || ||| ||
Sbjct: 453 agcttccattactgggcactacagggccaatgccagaatgacatggacggtctcctattc 394
Query: 647 gacaaccaggacccggaccaacccaagatccccggggacttcatcctcaagtacatcttc 706
|||||||| |||||||||| || |||||||||||| | ||||| || ||||||||||||
Sbjct: 393 gacaaccaatacccggaccagccgaagatccccgggcagttcatactgaagtacatcttc 334
Query: 707 cagatcaacgtggaccgttccaagtggatcgacctgtcggtcattttcagcatgatcttc 766
|||||||||||| |||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct: 333 cagatcaacgtgcaccggtcaaagtggatcgacctgtcggtcatcttcagcatgatcttc 274
Query: 767 atctaccgcatcctcttcttcctcatgatcaagatcaacgaggacgngctgccgtggatc 826
||||||||||| ||||||||| ||||||||||| | |||||||||| | |||| ||||||
Sbjct: 273 atctaccgcatgctcttcttcatcatgatcaaggtgaacgaggacgtgatgccctggatc 214
Query: 827 cgcggccacatcgcgaggaagaggatgcagaagaagggccctacccccactatgggcaag 886
|| ||| ||||||||||||| ||| | |||||||||| ||| || || ||||||
Sbjct: 213 cggggctacatcgcgaggaaaaggcttcagaagaaggtgcctgcc------atcggcaag 160
Query: 887 acgccttcgctgagaggctacgtcgtcgatccggagctcggt 928
|||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 159 acgccttccctgagaggctacgtcgtggatccggagctcggt 118
>gb|BJ456765.1|BJ456765 BJ456765 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak23f10 3', mRNA sequence
Length = 702
Score = 482 bits (243), Expect = e-134
Identities = 436/501 (87%), Gaps = 6/501 (1%)
Strand = Plus / Minus
Query: 428 gagagcttgatgatggcgattgccagtgtcattccaaatttcctcatgggtatcatcata 487
||||||||||||||||| ||||| |||||||| || |||||||||||||| |||||||||
Sbjct: 701 gagagcttgatgatggccattgcaagtgtcatacccaatttcctcatgggcatcatcata 642
Query: 488 ggggccgggattcagggaatattcatgctggtctctggctacttcagacttccatacgac 547
|| || || |||||||||||||||||||| |||||||| |||||||||||||| || |||
Sbjct: 641 ggagctggaattcagggaatattcatgcttgtctctggatacttcagacttccgtatgac 582
Query: 548 atcccgaagcccttttggagataccccatgcagtacatcagcttccactactgggcactg 607
||||| ||| || |||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 581 atccccaaggttttctggagatatcccatgcagtacatcagcttccattactgggcacta 522
Query: 608 cagggccagtgccagaacgacatgaagggcctcgcggtcgacaaccaggacccggaccaa 667
|||||||| |||||||| |||||| | || ||| |||||||||| ||||||||||
Sbjct: 521 cagggccaatgccagaatgacatggacggtctcctattcgacaaccaatacccggaccag 462
Query: 668 cccaagatccccggggacttcatcctcaagtacatcttccagatcaacgtggaccgttcc 727
|| |||||||||||| | ||||| || |||||||||||||||||||||||| |||| ||
Sbjct: 461 ccgaagatccccgggcagttcatactgaagtacatcttccagatcaacgtgcaccggtca 402
Query: 728 aagtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctcttcttc 787
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 401 aagtggatcgacctgtcggtcatcttcagcatgatcttcatctaccgcatgctcttcttc 342
Query: 788 ctcatgatcaagatcaacgaggacgngctgccgtggatccgcggccacatcgcgaggaag 847
||||||||||| | |||||||||| | |||| |||||||| ||| |||||||||||||
Sbjct: 341 atcatgatcaaggtgaacgaggacgtgatgccctggatccggggctacatcgcgaggaaa 282
Query: 848 aggatgcagaagaagggccctacccccactatgggcaagacgccttcgctgagaggctac 907
||| | |||||||||| ||| || || |||||||||||||| ||||||||||||
Sbjct: 281 aggcttcagaagaaggtgcctgcc------atcggcaagacgccttccctgagaggctac 228
Query: 908 gtcgtcgatccggagctcggt 928
||||| |||||||||||||||
Sbjct: 227 gtcgtggatccggagctcggt 207
>gb|CA015715.1|CA015715 HV12G12u HV Hordeum vulgare subsp. vulgare cDNA clone HV12G12
3-PRIME, mRNA sequence
Length = 546
Score = 381 bits (192), Expect = e-104
Identities = 361/418 (86%), Gaps = 6/418 (1%)
Strand = Plus / Minus
Query: 511 catgctggtctctggctacttcagacttccatacgacatcccgaagcccttttggagata 570
|||||| |||||||| |||||||||||||| || |||||||| ||| || ||||||||
Sbjct: 546 catgcttgtctctggatacttcagacttccgtatgacatccccaaggttttctggagata 487
Query: 571 ccccatgcagtacatcagcttccactactgggcactgcagggccagtgccagaacgacat 630
||||||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||
Sbjct: 486 tcccatgcagtacatcagcttccattactgggcactacagggccaatgccagaatgacat 427
Query: 631 gaagggcctcgcggtcgacaaccaggacccggaccaacccaagatccccggggacttcat 690
| | || ||| |||||||||| |||||||||| || |||||||||||| | |||||
Sbjct: 426 ggacggtctcctattcgacaaccaatacccggaccagccgaagatccccgggcagttcat 367
Query: 691 cctcaagtacatcttccagatcaacgtggaccgttccaagtggatcgacctgtcggtcat 750
|| |||||||||||||||||||||||| |||| || |||||||||||||||||||||||
Sbjct: 366 actgaagtacatcttccagatcaacgtgcaccggtcaaagtggatcgacctgtcggtcat 307
Query: 751 tttcagcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatcaacgagga 810
|||||||||||||||||||||||||| ||||||||| ||||||||||| | ||||||||
Sbjct: 306 cttcagcatgatcttcatctaccgcatgctcttcttcatcatgatcaaggtgaacgagga 247
Query: 811 cgngctgccgtggatccgcggccacatcgcgaggaagaggatgcagaagaagggccctac 870
|| | |||| |||||||| ||| ||||||||||||| ||| | |||||||||| ||| |
Sbjct: 246 cgtgatgccctggatccggggctacatcgcgaggaaaaggcttcagaagaaggtgcctgc 187
Query: 871 ccccactatgggcaagacgccttcgctgagaggctacgtcgtcgatccggagctcggt 928
| || |||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 186 c------atcggcaagacgccttccctgagaggctacgtcgtggatccggagctcggt 135
>gb|BJ449299.1|BJ449299 BJ449299 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak23f10 5', mRNA sequence
Length = 652
Score = 369 bits (186), Expect = e-100
Identities = 338/387 (87%), Gaps = 2/387 (0%)
Strand = Plus / Plus
Query: 19 cgctccttcatcaacatgtcgcgggactttgg-tactactggctnag-ctcntnatttac 76
||||| ||||||||||||||||| |||||||| ||||||||||| || ||| | || ||
Sbjct: 266 cgctcattcatcaacatgtcgcgcgactttgggtactactggctcaggctcttgatctat 325
Query: 77 ctcctcgtcaccgtttgcatcggcacgatctacctggacgtcggcaccaaatacacatcc 136
||||| |||||||| ||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct: 326 ctccttgtcaccgtctgcatcggcacaatctacctggatgttggcaccaaatacacatcc 385
Query: 137 atcctggccagggctgcctgctccgcgttcgtctttgggttcgttacgttcatgtccatt 196
|||||||||||||| || || | || ||||||||||| ||||| || ||||||||||||
Sbjct: 386 atcctggccagggcagcatgtgcagcattcgtctttggattcgtcaccttcatgtccatt 445
Query: 197 ggaggattcccttcgttcgttgaagaaatgaaggtcttccagcgggaacggctgaacggg 256
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 446 ggaggattcccttcattcgtggaagaaatgaaggtcttccagcgggaacggctgaatggg 505
Query: 257 cactacggtgtcgcggcgtttgtcatcagcaacaccatctcagccacgccgttcctgatt 316
||||||||||| || || |||||||| |||||||||||| || ||| |||||| |
Sbjct: 506 cactacggtgttgcagcatttgtcattgccaacaccatctcggctctgccattcctggtc 565
Query: 317 ctgatatgcttcttgtcgggaaccatatgctacttcatggtgcgcctccatcctggcttc 376
|||||||||||| |||| || || |||||||||||||||||||||| |||||||| |||
Sbjct: 566 ctgatatgcttcctgtcagggacagtatgctacttcatggtgcgccttcatcctggtttc 625
Query: 377 gagcactacatcttcttcgtcttgaac 403
||||||||||||||||||||||||
Sbjct: 626 tcacactacatcttcttcgtcttgaac 652
>gb|BQ468695.1|BQ468695 HM02A04r HM Hordeum vulgare subsp. vulgare cDNA clone HM02A04
5-PRIME, mRNA sequence
Length = 496
Score = 349 bits (176), Expect = 1e-094
Identities = 318/366 (86%), Gaps = 6/366 (1%)
Strand = Plus / Plus
Query: 563 tggagataccccatgcagtacatcagcttccactactgggcactgcagggccagtgccag 622
|||||||| ||||||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct: 25 tggagatatcccatgcagtacatcagcttccattactgggcactacagggccaatgccag 84
Query: 623 aacgacatgaagggcctcgcggtcgacaaccaggacccggaccaacccaagatccccggg 682
|| |||||| | || ||| |||||||||| |||||||||| || ||||||||||||
Sbjct: 85 aatgacatggacggtctcctattcgacaaccaatacccggaccagccgaagatccccggg 144
Query: 683 gacttcatcctcaagtacatcttccagatcaacgtggaccgttccaagtggatcgacctg 742
| ||||| || |||||||||||||||||||||||| |||| || |||||||||||||||
Sbjct: 145 cagttcatactgaagtacatcttccagatcaacgtgcaccggtcaaagtggatcgacctg 204
Query: 743 tcggtcattttcagcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatc 802
|||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||| |
Sbjct: 205 tcggtcatcttcagcatgatcttcatctaccgcatgctcttcttcatcatgatcaaggtg 264
Query: 803 aacgaggacgngctgccgtggatccgcggccacatcgcgaggaagaggatgcagaagaag 862
|||||||||| | |||| |||||||| ||| ||||||||||||| ||| | |||||||||
Sbjct: 265 aacgaggacgtgatgccctggatccggggctacatcgcgaggaaaaggcttcagaagaag 324
Query: 863 ggccctacccccactatgggcaagacgccttcgctgagaggctacgtcgtcgatccggag 922
| ||| || || |||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 325 gtgcctgcc------atcggcaagacgccttccctgagaggctacgtcgtggatccggag 378
Query: 923 ctcggt 928
||||||
Sbjct: 379 ctcggt 384
>gb|BJ452141.1|BJ452141 BJ452141 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak37o18 5', mRNA sequence
Length = 661
Score = 307 bits (155), Expect = 4e-082
Identities = 292/336 (86%), Gaps = 2/336 (0%)
Strand = Plus / Plus
Query: 19 cgctccttcatcaacatgtcgcgggactttgg-tactactggctnag-ctcntnatttac 76
||||| ||||||||||||||||| |||||||| ||||||||||| || ||| | || ||
Sbjct: 326 cgctcattcatcaacatgtcgcgcgactttgggtactactggctcaggctcttgatctat 385
Query: 77 ctcctcgtcaccgtttgcatcggcacgatctacctggacgtcggcaccaaatacacatcc 136
||||| |||||||| ||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct: 386 ctccttgtcaccgtctgcatcggcacaatctacctggatgttggcaccaaatacacatcc 445
Query: 137 atcctggccagggctgcctgctccgcgttcgtctttgggttcgttacgttcatgtccatt 196
|||||||||||||| || || | || ||||||||||| ||||| || ||||||||||||
Sbjct: 446 atcctggccagggcagcatgtgcagcattcgtctttggattcgtcaccttcatgtccatt 505
Query: 197 ggaggattcccttcgttcgttgaagaaatgaaggtcttccagcgggaacggctgaacggg 256
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 506 ggaggattcccttcattcgtggaagaaatgaaggtcttccagcgggaacggctgaatggg 565
Query: 257 cactacggtgtcgcggcgtttgtcatcagcaacaccatctcagccacgccgttcctgatt 316
||||||||||| || || |||||||| |||||||||||| || ||| |||||| |
Sbjct: 566 cactacggtgttgcagcatttgtcattgccaacaccatctcggctctgccattcctggtc 625
Query: 317 ctgatatgcttcttgtcgggaaccatatgctacttc 352
|||||||||||| |||| || || |||||||||||
Sbjct: 626 ctgatatgcttcctgtcagggacagtatgctacttc 661
>gb|BQ660965.1|BQ660965 HM01E18w HM Hordeum vulgare subsp. vulgare cDNA clone HM01E18
3-PRIME, mRNA sequence
Length = 374
Score = 242 bits (122), Expect = 2e-062
Identities = 212/243 (87%), Gaps = 6/243 (2%)
Strand = Plus / Minus
Query: 686 ttcatcctcaagtacatcttccagatcaacgtggaccgttccaagtggatcgacctgtcg 745
||||| || |||||||||||||||||||||||| |||| || ||||||||||||||||||
Sbjct: 368 ttcatactgaagtacatcttccagatcaacgtgcaccggtcaaagtggatcgacctgtcg 309
Query: 746 gtcattttcagcatgatcttcatctaccgcatcctcttcttcctcatgatcaagatcaac 805
||||| |||||||||||||||||||||||||| ||||||||| ||||||||||| | | |
Sbjct: 308 gtcatcttcagcatgatcttcatctaccgcatgctcttcttcatcatgatcaaggtganc 249
Query: 806 gaggacgngctgccgtggatccgcggccacatcgcgaggaagaggatgcagaagaagggc 865
||||||| | |||| |||||||| ||| ||||||||||||| ||| | ||||||||||
Sbjct: 248 gaggacgtgatgccctggatccggggctacatcgcgaggaaaaggcttcagaagaaggtg 189
Query: 866 cctacccccactatgggcaagacgccttcgctgagaggctacgtcgtcgatccggagctc 925
||| || || |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 188 cctgcc------atcggcaagacgccttccctgagaggctacgtcgtggatccggagctc 135
Query: 926 ggt 928
|||
Sbjct: 134 ggt 132
>gb|BE216587.2|BE216587 HV_CEb0010O06f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0010O06f, mRNA sequence
Length = 770
Score = 220 bits (111), Expect = 7e-056
Identities = 286/343 (83%), Gaps = 1/343 (0%)
Strand = Plus / Plus
Query: 199 aggattcccttcgttcgttgaagaaatgaaggtcttccagcgggaacggctgaacgggca 258
|||| ||||||| |||| ||| ||||||| ||||||||| |||| |||||||| ||||
Sbjct: 121 aggactcccttccttcgcggaacaaatgaacgtcttccagtgggagcggctgaatgggcc 180
Query: 259 ctacggtgtcgcggcgtttgtcatcagcaacaccatctcagccacgccgttcctgattct 318
|||| ||||||| || ||||||| |||||||||||| | ||| |||||| ||
Sbjct: 181 ctacagtgtcgcagcaattgtcattgccaacaccatctcggatctgccattcctggacct 240
Query: 319 gatatgcttcttgtcgggaaccatatgctacttcatggtgcgcctccatcctggcttcga 378
|||||||||| |||| || || |||||||||||||||||||||| |||||||| |||
Sbjct: 241 gatatgcttcctgtcagggacagtatgctacttcatggtgcgccttcatcctggtttctc 300
Query: 379 gcactacatcttcttcgtcttgaacctgtacgccagcgttacggtggtcgagagcttgat 438
||||||||||| |||||||||||||| |||||||| || || ||||| |||||||||||
Sbjct: 301 acactacatcttattcgtcttgaacctatacgccagtgtcaccgtggttgagagcttgat 360
Query: 439 gatggcgattgccagtgtcattccaaatttcctcatgggtatcatcataggggccgggat 498
|||||| ||||| |||| ||| || |||||||||||||| ||||||||||| || | ||
Sbjct: 361 gatggccattgcaagtggcatacccaatttcctcatgggcatcatcataggagctgaaat 420
Query: 499 tcaggg-aatattcatgctggtctctggctacttcagacttcc 540
|||||| |||||||||||| | |||||| ||||||| ||||||
Sbjct: 421 tcagggaaatattcatgcttggctctggatacttcaaacttcc 463
>gb|CB879914.1|CB879914 HP10M02T HP Hordeum vulgare subsp. vulgare cDNA clone HP10M02
5-PRIME, mRNA sequence
Length = 324
Score = 200 bits (101), Expect = 7e-050
Identities = 174/199 (87%), Gaps = 6/199 (3%)
Strand = Plus / Plus
Query: 730 gtggatcgacctgtcggtcattttcagcatgatcttcatctaccgcatcctcttcttcct 789
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct: 10 gtggatcgacctgtcggtcatcttcagcatgatcttcatctaccgcatgctcttcttcat 69
Query: 790 catgatcaagatcaacgaggacgngctgccgtggatccgcggccacatcgcgaggaagag 849
|||||||||| | |||||||||| | |||| |||||||| ||| ||||||||||||| ||
Sbjct: 70 catgatcaaggtgaacgaggacgtgatgccctggatccggggctacatcgcgaggaaaag 129
Query: 850 gatgcagaagaagggccctacccccactatgggcaagacgccttcgctgagaggctacgt 909
| | |||||||||| ||| || || |||||||||||||| ||||||||||||||
Sbjct: 130 gcttcagaagaaggtgcctgcc------atcggcaagacgccttccctgagaggctacgt 183
Query: 910 cgtcgatccggagctcggt 928
||| |||||||||||||||
Sbjct: 184 cgtggatccggagctcggt 202
>gb|BQ465136.1|BQ465136 HU02M04r HU Hordeum vulgare subsp. vulgare cDNA clone HU02M04
5-PRIME, mRNA sequence
Length = 651
Score = 192 bits (97), Expect = 2e-047
Identities = 171/194 (88%), Gaps = 2/194 (1%)
Strand = Plus / Plus
Query: 19 cgctccttcatcaacatgtcgcgggactttgg-tactactggctnag-ctcntnatttac 76
||||| ||||||||||||||||| |||||||| ||||||||||| || ||| | || ||
Sbjct: 455 cgctcattcatcaacatgtcgcgcgactttgggtactactggctcaggctcttgatctat 514
Query: 77 ctcctcgtcaccgtttgcatcggcacgatctacctggacgtcggcaccaaatacacatcc 136
||||| |||||||| ||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct: 515 ctccttgtcaccgtctgcatcggcacaatctacctggatgttggcaccaaatacacatcc 574
Query: 137 atcctggccagggctgcctgctccgcgttcgtctttgggttcgttacgttcatgtccatt 196
|||||||||||||| || || | || ||||||||||| ||||| || ||||||||||||
Sbjct: 575 atcctggccagggcagcatgtgcagcattcgtctttggattcgtcaccttcatgtccatt 634
Query: 197 ggaggattcccttc 210
||||||||||||||
Sbjct: 635 ggaggattcccttc 648
>gb|BQ464884.1|BQ464884 HU02A16r HU Hordeum vulgare subsp. vulgare cDNA clone HU02A16
5-PRIME, mRNA sequence
Length = 625
Score = 149 bits (75), Expect = 2e-034
Identities = 143/164 (87%), Gaps = 2/164 (1%)
Strand = Plus / Plus
Query: 19 cgctccttcatcaacatgtcgcgggactttgg-tactactggctnag-ctcntnatttac 76
||||| ||||||||||||||||| |||||||| ||||||||||| || ||| | || ||
Sbjct: 455 cgctcattcatcaacatgtcgcgcgactttgggtactactggctcaggctcttgatctat 514
Query: 77 ctcctcgtcaccgtttgcatcggcacgatctacctggacgtcggcaccaaatacacatcc 136
||||| |||||||| ||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct: 515 ctccttgtcaccgtctgcatcggcacaatctacctggatgttggcaccaaatacacatcc 574
Query: 137 atcctggccagggctgcctgctccgcgttcgtctttgggttcgt 180
|||||||||||||| || || | || ||||||||||| |||||
Sbjct: 575 atcctggccagggcagcatgtgcagcattcgtctttggattcgt 618
>gb|CA008593.1|CA008593 HU11H08r HU Hordeum vulgare subsp. vulgare cDNA clone HU11H08
5-PRIME, mRNA sequence
Length = 604
Score = 145 bits (73), Expect = 3e-033
Identities = 120/134 (89%), Gaps = 2/134 (1%)
Strand = Plus / Plus
Query: 19 cgctccttcatcaacatgtcgcgggactttgg-tactactggctnag-ctcntnatttac 76
||||| ||||||||||||||||| |||||||| ||||||||||| || ||| | || ||
Sbjct: 451 cgctcattcatcaacatgtcgcgcgactttgggtactactggctcaggctcttgatctat 510
Query: 77 ctcctcgtcaccgtttgcatcggcacgatctacctggacgtcggcaccaaatacacatcc 136
||||| |||||||| ||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct: 511 ctccttgtcaccgtctgcatcggcacaatctacctggatgttggcaccaaatacacatcc 570
Query: 137 atcctggccagggc 150
||||||||||||||
Sbjct: 571 atcctggccagggc 584
>gb|CD663714.1|CD663714 UCRHV18_06bf08_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_06bf08, mRNA sequence
Length = 354
Score = 81.8 bits (41), Expect = 4e-014
Identities = 91/108 (84%), Gaps = 6/108 (5%)
Strand = Plus / Minus
Query: 821 tggatccgcggccacatcgcgaggaagaggatgcagaagaagggccctacccccactatg 880
|||||||| ||| ||||||||||||| ||| | |||||||||| ||| || ||
Sbjct: 353 tggatccggggctacatcgcgaggaaaaggcttcagaagaaggtgcctgcc------atc 300
Query: 881 ggcaagacgccttcgctgagaggctacgtcgtcgatccggagctcggt 928
|||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 299 ggcaagacgccttccctgagaggctacgtcgtggatccggagctcggt 252
>gb|BG343105.2|BG343105 HVSMEg0002D22f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0002D22f, mRNA sequence
Length = 275
Score = 79.8 bits (40), Expect = 2e-013
Identities = 46/48 (95%)
Strand = Plus / Plus
Query: 881 ggcaagacgccttcgctgagaggctacgtcgtcgatccggagctcggt 928
|||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 24 ggcaagacgccttccctgagaggctacgtcgtggatccggagctcggt 71
>gb|BM374207.2|BM374207 EBma03_SQ003_P10_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_P10 5', mRNA sequence
Length = 492
Score = 56.0 bits (28), Expect = 2e-006
Identities = 41/44 (93%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 19 cgctccttcatcaacatgtcgcgggacttt-ggtactactggct 61
||||| ||||||||||||||||| |||||| |||||||||||||
Sbjct: 432 cgctcattcatcaacatgtcgcgcgactttgggtactactggct 475
>gb|BI777732.2|BI777732 EBro08_SQ001_L03_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ001_L03 5', mRNA sequence
Length = 447
Score = 46.1 bits (23), Expect = 0.002
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 185 ttcatgtccattggaggattcccttcgttcgttgaagaaatgaaggtcttccagcgggaa 244
|||||| |||| ||||||||||| || ||||| || || |||||| | ||| | ||||
Sbjct: 271 ttcatggccatcggaggattcccgtctttcgtcgaggatatgaagatattcgggagggag 330
Query: 245 cggctgaacgggcactacggtgt 267
|| |||||||||||||||||||
Sbjct: 331 aggttgaacgggcactacggtgt 353
>gb|BE195878.2|BE195878 HVSMEh0090L15f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0090L15f, mRNA sequence
Length = 637
Score = 42.1 bits (21), Expect = 0.036
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 840 cgaggaagaggatgcagaaga 860
|||||||||||||||||||||
Sbjct: 444 cgaggaagaggatgcagaaga 464
>gb|AV913668.1|AV913668 AV913668 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22n22 5', mRNA sequence
Length = 618
Score = 42.1 bits (21), Expect = 0.036
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 840 cgaggaagaggatgcagaaga 860
|||||||||||||||||||||
Sbjct: 409 cgaggaagaggatgcagaaga 429
>gb|AV918971.1|AV918971 AV918971 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags22n22 3', mRNA sequence
Length = 716
Score = 42.1 bits (21), Expect = 0.036
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 840 cgaggaagaggatgcagaaga 860
|||||||||||||||||||||
Sbjct: 474 cgaggaagaggatgcagaaga 454
>gb|BJ467651.1|BJ467651 BJ467651 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags29d21 3', mRNA sequence
Length = 654
Score = 42.1 bits (21), Expect = 0.036
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 840 cgaggaagaggatgcagaaga 860
|||||||||||||||||||||
Sbjct: 430 cgaggaagaggatgcagaaga 410
>gb|BQ664000.1|BQ664000 HU04P15u HU Hordeum vulgare subsp. vulgare cDNA clone HU04P15
3-PRIME, mRNA sequence
Length = 526
Score = 42.1 bits (21), Expect = 0.036
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 840 cgaggaagaggatgcagaaga 860
|||||||||||||||||||||
Sbjct: 434 cgaggaagaggatgcagaaga 414
>gb|BM377208.2|BM377208 EBem05_SQ004_H02_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ004_H02 5', mRNA sequence
Length = 575
Score = 42.1 bits (21), Expect = 0.036
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 840 cgaggaagaggatgcagaaga 860
|||||||||||||||||||||
Sbjct: 250 cgaggaagaggatgcagaaga 270
>gb|BM375430.2|BM375430 EBem06_SQ003_F05_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ003_F05 5', mRNA sequence
Length = 600
Score = 42.1 bits (21), Expect = 0.036
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 840 cgaggaagaggatgcagaaga 860
|||||||||||||||||||||
Sbjct: 117 cgaggaagaggatgcagaaga 137
>gb|BM375469.2|BM375469 EBem06_SQ003_H05_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ003_H05 5', mRNA sequence
Length = 513
Score = 42.1 bits (21), Expect = 0.036
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 840 cgaggaagaggatgcagaaga 860
|||||||||||||||||||||
Sbjct: 216 cgaggaagaggatgcagaaga 236
>gb|BU985790.1|BU985790 HF08K04r HF Hordeum vulgare subsp. vulgare cDNA clone HF08K04
5-PRIME, mRNA sequence
Length = 562
Score = 42.1 bits (21), Expect = 0.036
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 840 cgaggaagaggatgcagaaga 860
|||||||||||||||||||||
Sbjct: 372 cgaggaagaggatgcagaaga 392
>gb|CA017295.1|CA017295 HV12P03u HV Hordeum vulgare subsp. vulgare cDNA clone HV12P03
3-PRIME, mRNA sequence
Length = 534
Score = 42.1 bits (21), Expect = 0.036
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 840 cgaggaagaggatgcagaaga 860
|||||||||||||||||||||
Sbjct: 471 cgaggaagaggatgcagaaga 451
>gb|CK123146.1|CK123146 BES1824102e10 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E102 5-PRIME, mRNA sequence
Length = 678
Score = 42.1 bits (21), Expect = 0.036
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 840 cgaggaagaggatgcagaaga 860
|||||||||||||||||||||
Sbjct: 335 cgaggaagaggatgcagaaga 355
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 108,311
Number of Sequences: 312970
Number of extensions: 108311
Number of successful extensions: 30467
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 30410
Number of HSP's gapped (non-prelim): 39
length of query: 1030
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1011
effective length of database: 169,188,109
effective search space: 171049178199
effective search space used: 171049178199
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)