BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3866391.2.1
(613 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV917238.1|AV917238 AV917238 K. Sato unpublished cDNA li... 159 1e-037
gb|BJ464184.1|BJ464184 BJ464184 K. Sato unpublished cDNA li... 159 1e-037
gb|BJ464493.1|BJ464493 BJ464493 K. Sato unpublished cDNA li... 159 1e-037
gb|CA019622.1|CA019622 HV12J09r HV Hordeum vulgare subsp. v... 159 1e-037
gb|CA029164.1|CA029164 HZ64G11r HZ Hordeum vulgare subsp. v... 159 1e-037
gb|BJ465003.1|BJ465003 BJ465003 K. Sato unpublished cDNA li... 153 8e-036
gb|AV927306.1|AV927306 AV927306 K. Sato unpublished cDNA li... 147 5e-034
gb|AV914567.1|AV914567 AV914567 K. Sato unpublished cDNA li... 145 2e-033
gb|AV915997.1|AV915997 AV915997 K. Sato unpublished cDNA li... 145 2e-033
gb|AV918446.1|AV918446 AV918446 K. Sato unpublished cDNA li... 145 2e-033
gb|AV921112.1|AV921112 AV921112 K. Sato unpublished cDNA li... 145 2e-033
gb|BU968861.1|BU968861 HB08M23r BC Hordeum vulgare subsp. v... 145 2e-033
gb|AV920965.1|AV920965 AV920965 K. Sato unpublished cDNA li... 141 3e-032
gb|AV913374.1|AV913374 AV913374 K. Sato unpublished cDNA li... 137 5e-031
gb|AV918673.1|AV918673 AV918673 K. Sato unpublished cDNA li... 137 5e-031
gb|BF628635.2|BF628635 HVSMEb0006N15f Hordeum vulgare seedl... 135 2e-030
gb|BG301188.1|BG301188 HVSMEb0019N18f Hordeum vulgare seedl... 135 2e-030
gb|BJ463196.1|BJ463196 BJ463196 K. Sato unpublished cDNA li... 135 2e-030
gb|AV913156.1|AV913156 AV913156 K. Sato unpublished cDNA li... 121 3e-026
gb|AV915851.1|AV915851 AV915851 K. Sato unpublished cDNA li... 121 3e-026
gb|AV916927.1|AV916927 AV916927 K. Sato unpublished cDNA li... 117 4e-025
gb|BJ466861.1|BJ466861 BJ466861 K. Sato unpublished cDNA li... 117 4e-025
gb|AV930901.1|AV930901 AV930901 K. Sato unpublished cDNA li... 109 1e-022
gb|CA016039.1|CA016039 HV10M21u HV Hordeum vulgare subsp. v... 105 2e-021
gb|AV913934.1|AV913934 AV913934 K. Sato unpublished cDNA li... 100 1e-019
gb|AV918176.1|AV918176 AV918176 K. Sato unpublished cDNA li... 100 1e-019
gb|AV918301.1|AV918301 AV918301 K. Sato unpublished cDNA li... 100 1e-019
gb|AV919647.1|AV919647 AV919647 K. Sato unpublished cDNA li... 100 1e-019
gb|AV922405.1|AV922405 AV922405 K. Sato unpublished cDNA li... 100 1e-019
gb|AV921548.1|AV921548 AV921548 K. Sato unpublished cDNA li... 82 2e-014
gb|BJ453643.1|BJ453643 BJ453643 K. Sato unpublished cDNA li... 76 2e-012
gb|BM443957.2|BM443957 EBem09_SQ002_E09_R embryo, 1 Day ger... 70 9e-011
gb|BQ471556.1|BQ471556 HV02M13r HV Hordeum vulgare subsp. v... 68 4e-010
gb|BJ452936.1|BJ452936 BJ452936 K. Sato unpublished cDNA li... 64 6e-009
gb|CA009631.1|CA009631 HU14K18r HU Hordeum vulgare subsp. v... 62 2e-008
gb|CA015705.1|CA015705 HV12J09u HV Hordeum vulgare subsp. v... 62 2e-008
gb|BJ460485.1|BJ460485 BJ460485 K. Sato unpublished cDNA li... 58 4e-007
gb|BE519761.3|BE519761 HV_CEb0021C04f Hordeum vulgare seedl... 46 0.001
gb|AV917596.1|AV917596 AV917596 K. Sato unpublished cDNA li... 44 0.005
gb|AV922276.1|AV922276 AV922276 K. Sato unpublished cDNA li... 44 0.005
gb|BJ464550.1|BJ464550 BJ464550 K. Sato unpublished cDNA li... 44 0.005
gb|AL504503.1|AL504503 AL504503 Hordeum vulgare Barke roots... 42 0.021
gb|AL504075.1|AL504075 AL504075 Hordeum vulgare Barke roots... 38 0.33
gb|BI957283.1|BI957283 HVSMEn0008K04f Hordeum vulgare rachi... 38 0.33
gb|BG343142.2|BG343142 HVSMEg0002L08f Hordeum vulgare pre-a... 38 0.33
gb|AV912854.1|AV912854 AV912854 K. Sato unpublished cDNA li... 38 0.33
gb|AV914194.1|AV914194 AV914194 K. Sato unpublished cDNA li... 38 0.33
gb|AV921527.1|AV921527 AV921527 K. Sato unpublished cDNA li... 38 0.33
gb|AV922603.1|AV922603 AV922603 K. Sato unpublished cDNA li... 38 0.33
gb|BM817083.1|BM817083 HC01F04_T3.ab1 HC Hordeum vulgare su... 38 0.33
gb|AJ433404.1|AJ433404 AJ433404 S00002 Hordeum vulgare subs... 38 0.33
gb|AJ436646.1|AJ436646 AJ436646 S00002 Hordeum vulgare subs... 38 0.33
gb|AJ463481.1|AJ463481 AJ463481 S00002 Hordeum vulgare subs... 38 0.33
gb|BJ465891.1|BJ465891 BJ465891 K. Sato unpublished cDNA li... 38 0.33
gb|BJ467535.1|BJ467535 BJ467535 K. Sato unpublished cDNA li... 38 0.33
gb|BQ664209.1|BQ664209 HV02F12u HV Hordeum vulgare subsp. v... 38 0.33
gb|BQ665478.1|BQ665478 HX03M12u HX Hordeum vulgare subsp. v... 38 0.33
gb|BI777730.2|BI777730 EBro08_SQ001_K12_R root, 3 week, dro... 38 0.33
gb|CA025677.1|CA025677 HZ52M20r HZ Hordeum vulgare subsp. v... 38 0.33
gb|CB881714.1|CB881714 HM10K16w HM Hordeum vulgare subsp. v... 38 0.33
>gb|AV917238.1|AV917238 AV917238 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18b09 5', mRNA sequence
Length = 615
Score = 159 bits (80), Expect = 1e-037
Identities = 161/188 (85%)
Strand = Plus / Plus
Query: 56 ttcatccatgtcttgctctcccttcagcaagagtacaacctgacgagagatcagatcaag 115
|||||||| |||||||| || ||||||||||||||||||| || ||||| || |||||
Sbjct: 235 ttcatccacgtcttgctttctgttcagcaagagtacaacctcacaagagaccatatcaaa 294
Query: 116 gcgcagctggtggtcatgttcgaagctggcactgacacatccttcatagtgctggaatac 175
|| ||| || || ||||||| ||||||||||| |||||||| |||||| |||||||||
Sbjct: 295 gctcagttgctgatcatgtttgaagctggcacggacacatcaaccatagtactggaatac 354
Query: 176 gccatggttcagctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgagg 235
|||||||||| |||||||| ||||||| | | ||| ||| |||||||||||||||||||
Sbjct: 355 gccatggttcggctgatgcagaacccccgcgtcatggccatgctacaagccgaggtgagg 414
Query: 236 agcaccat 243
||||||||
Sbjct: 415 agcaccat 422
Score = 69.9 bits (35), Expect = 9e-011
Identities = 95/115 (82%)
Strand = Plus / Plus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctcg 353
||||||| |||||||| |||| ||||| || ||||| |||||||||| || ||| | |
Sbjct: 470 cctacctaaaggcagtgatcaaggagacactccggcttcacatgccggggccgctcatgg 529
Query: 354 tgccccacctctccatggccgactgcaccatacaagggtacacgataccgtcggg 408
||||||| |||||||||| ||| |||| |||| | || ||||||||||| |||||
Sbjct: 530 tgccccatctctccatggacgaatgcatcataaacggctacacgataccatcggg 584
>gb|BJ464184.1|BJ464184 BJ464184 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33d19 5', mRNA sequence
Length = 597
Score = 159 bits (80), Expect = 1e-037
Identities = 161/188 (85%)
Strand = Plus / Plus
Query: 56 ttcatccatgtcttgctctcccttcagcaagagtacaacctgacgagagatcagatcaag 115
|||||||| |||||||| || ||||||||||||||||||| || ||||| || |||||
Sbjct: 142 ttcatccacgtcttgctttctgttcagcaagagtacaacctcacaagagaccatatcaaa 201
Query: 116 gcgcagctggtggtcatgttcgaagctggcactgacacatccttcatagtgctggaatac 175
|| ||| || || ||||||| ||||||||||| |||||||| |||||| |||||||||
Sbjct: 202 gctcagttgctgatcatgtttgaagctggcacggacacatcaaccatagtactggaatac 261
Query: 176 gccatggttcagctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgagg 235
|||||||||| |||||||| ||||||| | | ||| ||| |||||||||||||||||||
Sbjct: 262 gccatggttcggctgatgcagaacccccgcgtcatggccatgctacaagccgaggtgagg 321
Query: 236 agcaccat 243
||||||||
Sbjct: 322 agcaccat 329
Score = 91.7 bits (46), Expect = 3e-017
Identities = 172/214 (80%)
Strand = Plus / Plus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctcg 353
||||||| |||||||| |||| ||||| || ||||| |||||||||| || ||| | |
Sbjct: 377 cctacctaaaggcagtgatcaaggagacactccggcttcacatgccggggccgctcatgg 436
Query: 354 tgccccacctctccatggccgactgcaccatacaagggtacacgataccgtcgggaacac 413
||||||| |||||||||| ||| |||| |||| | || ||||||||||| ||||| || |
Sbjct: 437 tgccccatctctccatggacgaatgcatcataaacggctacacgataccatcggggacgc 496
Query: 414 gaaccatcgtcaacagctgggctctcgcgagggaccccagctgctgggagagagccgagg 473
| || || |||||| || ||| || |||||| || ||| ||||||||| | ||||
Sbjct: 497 gcactttcatcaacacctatgctatccagagggatcctagcaactgggagagcccagagg 556
Query: 474 agttcatgcccgagcgcttcatggagggcggcag 507
|||||||||| ||||| |||||||| ||||||||
Sbjct: 557 agttcatgcctgagcggttcatggaaggcggcag 590
>gb|BJ464493.1|BJ464493 BJ464493 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags34j09 5', mRNA sequence
Length = 523
Score = 159 bits (80), Expect = 1e-037
Identities = 161/188 (85%)
Strand = Plus / Plus
Query: 56 ttcatccatgtcttgctctcccttcagcaagagtacaacctgacgagagatcagatcaag 115
|||||||| |||||||| || ||||||||||||||||||| || ||||| || |||||
Sbjct: 142 ttcatccacgtcttgctttctgttcagcaagagtacaacctcacaagagaccatatcaaa 201
Query: 116 gcgcagctggtggtcatgttcgaagctggcactgacacatccttcatagtgctggaatac 175
|| ||| || || ||||||| ||||||||||| |||||||| |||||| |||||||||
Sbjct: 202 gctcagttgctgatcatgtttgaagctggcacggacacatcaaccatagtactggaatac 261
Query: 176 gccatggttcagctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgagg 235
|||||||||| |||||||| ||||||| | | ||| ||| |||||||||||||||||||
Sbjct: 262 gccatggttcggctgatgcagaacccccgcgtcatggccatgctacaagccgaggtgagg 321
Query: 236 agcaccat 243
||||||||
Sbjct: 322 agcaccat 329
Score = 69.9 bits (35), Expect = 9e-011
Identities = 95/115 (82%)
Strand = Plus / Plus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctcg 353
||||||| |||||||| |||| ||||| || ||||| |||||||||| || ||| | |
Sbjct: 377 cctacctaaaggcagtgatcaaggagacactccggcttcacatgccggggccgctcatgg 436
Query: 354 tgccccacctctccatggccgactgcaccatacaagggtacacgataccgtcggg 408
||||||| |||||||||| ||| |||| |||| | || ||||||||||| |||||
Sbjct: 437 tgccccatctctccatggacgaatgcatcataaacggctacacgataccatcggg 491
>gb|CA019622.1|CA019622 HV12J09r HV Hordeum vulgare subsp. vulgare cDNA clone HV12J09
5-PRIME, mRNA sequence
Length = 533
Score = 159 bits (80), Expect = 1e-037
Identities = 161/188 (85%)
Strand = Plus / Plus
Query: 56 ttcatccatgtcttgctctcccttcagcaagagtacaacctgacgagagatcagatcaag 115
|||||||| |||||||| || ||||||||||||||||||| || ||||| || |||||
Sbjct: 250 ttcatccacgtcttgctttctgttcagcaagagtacaacctcacaagagaccatatcaaa 309
Query: 116 gcgcagctggtggtcatgttcgaagctggcactgacacatccttcatagtgctggaatac 175
|| ||| || || ||||||| ||||||||||| |||||||| |||||| |||||||||
Sbjct: 310 gctcagttgctgatcatgtttgaagctggcacggacacatcaaccatagtactggaatac 369
Query: 176 gccatggttcagctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgagg 235
|||||||||| |||||||| ||||||| | | ||| ||| |||||||||||||||||||
Sbjct: 370 gccatggttcggctgatgcagaacccccgcgtcatggccatgctacaagccgaggtgagg 429
Query: 236 agcaccat 243
||||||||
Sbjct: 430 agcaccat 437
>gb|CA029164.1|CA029164 HZ64G11r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ64G11
5-PRIME, mRNA sequence
Length = 382
Score = 159 bits (80), Expect = 1e-037
Identities = 161/188 (85%)
Strand = Plus / Plus
Query: 56 ttcatccatgtcttgctctcccttcagcaagagtacaacctgacgagagatcagatcaag 115
|||||||| |||||||| || ||||||||||||||||||| || ||||| || |||||
Sbjct: 159 ttcatccacgtcttgctttctgttcagcaagagtacaacctcacaagagaccatatcaaa 218
Query: 116 gcgcagctggtggtcatgttcgaagctggcactgacacatccttcatagtgctggaatac 175
|| ||| || || ||||||| ||||||||||| |||||||| |||||| |||||||||
Sbjct: 219 gctcagttgctgatcatgtttgaagctggcacggacacatcaaccatagtactggaatac 278
Query: 176 gccatggttcagctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgagg 235
|||||||||| |||||||| ||||||| | | ||| ||| |||||||||||||||||||
Sbjct: 279 gccatggttcggctgatgcagaacccccgcgtcatggccatgctacaagccgaggtgagg 338
Query: 236 agcaccat 243
||||||||
Sbjct: 339 agcaccat 346
>gb|BJ465003.1|BJ465003 BJ465003 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36o23 5', mRNA sequence
Length = 664
Score = 153 bits (77), Expect = 8e-036
Identities = 191/229 (83%)
Strand = Plus / Plus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctcg 353
||||||| ||||| ||| |||| ||||| || ||||| |||||||| || || || || |
Sbjct: 37 cctacctaaaggccgtcatcaaggagacactccggcttcacatgcctgcgccgcttctgg 96
Query: 354 tgccccacctctccatggccgactgcaccatacaagggtacacgataccgtcgggaacac 413
||||||| ||| |||||||||||||| |||| | || ||||| |||||||| || ||||
Sbjct: 97 tgccccatctcgccatggccgactgcgtcataaacggctacaccataccgtccgggacac 156
Query: 414 gaaccatcgtcaacagctgggctctcgcgagggaccccagctgctgggagagagccgagg 473
| ||||||||| ||| ||||| |||||||||| |||||| |||||||||| || ||||
Sbjct: 157 gcgtcatcgtcaatagccgggctatcgcgagggatcccagcagctgggagagcgcggagg 216
Query: 474 agttcatgcccgagcgcttcatggagggcggcagtgccgcagccatgga 522
||||| |||| |||||||||||| | ||||||||||| || ||||||||
Sbjct: 217 agttcctgcctgagcgcttcatgcaaggcggcagtgctgcggccatgga 265
>gb|AV927306.1|AV927306 AV927306 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd1h15 3', mRNA sequence
Length = 586
Score = 147 bits (74), Expect = 5e-034
Identities = 188/226 (83%)
Strand = Plus / Minus
Query: 297 acctcaaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctcgtgc 356
|||| ||||| ||| |||| ||||| || ||||| |||||||| || || || || ||||
Sbjct: 586 acctaaaggccgtcatcaaggagacactccggcttcacatgcctgcgccgcttctggtgc 527
Query: 357 cccacctctccatggccgactgcaccatacaagggtacacgataccgtcgggaacacgaa 416
|||| ||| |||||||||||||| |||| | || ||||| |||||||| || |||||
Sbjct: 526 cccatctcgccatggccgactgcgtcataaacggctacaccataccgtccgggacacgcg 467
Query: 417 ccatcgtcaacagctgggctctcgcgagggaccccagctgctgggagagagccgaggagt 476
||||||||| ||| ||||| |||||||||| |||||| |||||||||| || |||||||
Sbjct: 466 tcatcgtcaatagccgggctatcgcgagggatcccagcagctgggagagcgcggaggagt 407
Query: 477 tcatgcccgagcgcttcatggagggcggcagtgccgcagccatgga 522
|| |||| |||||||||||| | ||||||||||| || ||||||||
Sbjct: 406 tcctgcctgagcgcttcatgcaaggcggcagtgctgcggccatgga 361
>gb|AV914567.1|AV914567 AV914567 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6p16 5', mRNA sequence
Length = 618
Score = 145 bits (73), Expect = 2e-033
Identities = 161/189 (85%), Gaps = 1/189 (0%)
Strand = Plus / Plus
Query: 56 ttcatccatgtcttgctctcccttcagcaagagtacaacctgacgag-agatcagatcaa 114
|||||||| |||||||| || ||||||||||||||||||| || || ||| || |||||
Sbjct: 105 ttcatccacgtcttgctttctgttcagcaagagtacaacctcacaagnagaccatatcaa 164
Query: 115 ggcgcagctggtggtcatgttcgaagctggcactgacacatccttcatagtgctggaata 174
|| ||| || || ||||||| ||||||||||| |||||||| |||||| ||||||||
Sbjct: 165 agctcagttgctgatcatgtttgaagctggcacggacacatcaaccatagtactggaata 224
Query: 175 cgccatggttcagctgatgcgaaacccccacctgatgaccaagctacaagccgaggtgag 234
||||||||||| |||||||| ||||||| | | ||| ||| ||||||||||||||||||
Sbjct: 225 cgccatggttcggctgatgcagaacccccgcgtcatggccatgctacaagccgaggtgag 284
Query: 235 gagcaccat 243
|||||||||
Sbjct: 285 gagcaccat 293
Score = 99.6 bits (50), Expect = 1e-019
Identities = 185/230 (80%)
Strand = Plus / Plus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctcg 353
||||||| |||||||| |||| ||||| || ||||| |||||||||| || ||| | |
Sbjct: 341 cctacctaaaggcagtgatcaaggagacactccggcttcacatgccggggccgctcatgg 400
Query: 354 tgccccacctctccatggccgactgcaccatacaagggtacacgataccgtcgggaacac 413
||||||| |||||||||| ||| |||| |||| | || ||||||||||| ||||| || |
Sbjct: 401 tgccccatctctccatggacgaatgcatcataaacggctacacgataccatcggggacgc 460
Query: 414 gaaccatcgtcaacagctgggctctcgcgagggaccccagctgctgggagagagccgagg 473
| || || |||||| || ||| || |||||| || ||| ||||||||| | ||||
Sbjct: 461 gcactttcatcaacacctatgctatccagagggatcctagcaactgggagagcccagagg 520
Query: 474 agttcatgcccgagcgcttcatggagggcggcagtgccgcagccatggac 523
|||||||||| ||||| |||||||| |||||||| || || |||||||||
Sbjct: 521 agttcatgcctgagcggttcatggaaggcggcagcgctgccgccatggac 570
>gb|AV915997.1|AV915997 AV915997 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1a14 5', mRNA sequence
Length = 606
Score = 145 bits (73), Expect = 2e-033
Identities = 190/229 (82%)
Strand = Plus / Plus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctcg 353
||||||| ||||| ||| |||| ||||| || ||||| |||||||| || || || || |
Sbjct: 268 cctacctaaaggccgtcatcaaggagacactccggcttcacatgcctgcgccgcttctgg 327
Query: 354 tgccccacctctccatggccgactgcaccatacaagggtacacgataccgtcgggaacac 413
||||||| ||| |||||||||| ||| |||| | || ||||| |||||||| || ||||
Sbjct: 328 tgccccatctcgccatggccgattgcgtcataaacggctacaccataccgtccgggacac 387
Query: 414 gaaccatcgtcaacagctgggctctcgcgagggaccccagctgctgggagagagccgagg 473
| ||||||||| ||| ||||| |||||||||| |||||| |||||||||| || ||||
Sbjct: 388 gcgtcatcgtcaatagccgggctatcgcgagggatcccagcagctgggagagcgcggagg 447
Query: 474 agttcatgcccgagcgcttcatggagggcggcagtgccgcagccatgga 522
||||| |||| |||||||||||| | ||||||||||| || ||||||||
Sbjct: 448 agttcctgcctgagcgcttcatgcaaggcggcagtgctgcggccatgga 496
Score = 135 bits (68), Expect = 2e-030
Identities = 137/160 (85%)
Strand = Plus / Plus
Query: 78 ttcagcaagagtacaacctgacgagagatcagatcaaggcgcagctggtggtcatgttcg 137
||||| ||||||||||||| || || || ||| |||| || ||| ||||| ||||||| |
Sbjct: 55 ttcagaaagagtacaacctcacaagggagcaggtcaaagctcagttggtgatcatgtttg 114
Query: 138 aagctggcactgacacatccttcatagtgctggaatacgccatggttcagctgatgcgaa 197
||||||||| |||||||| | ||||||| ||||||||||||||| || ||| |||| ||
Sbjct: 115 gagctggcacggacacatcatacatagtgatggaatacgccatggctcggctcatgcaaa 174
Query: 198 acccccacctgatgaccaagctacaagccgaggtgaggag 237
||||| |||| |||||||||||||| ||||||||||||||
Sbjct: 175 accccgacctcatgaccaagctacaggccgaggtgaggag 214
>gb|AV918446.1|AV918446 AV918446 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21b10 3', mRNA sequence
Length = 604
Score = 145 bits (73), Expect = 2e-033
Identities = 184/221 (83%)
Strand = Plus / Minus
Query: 302 aaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctcgtgccccac 361
||||| ||| |||| ||||| || ||||| |||||||| || || || || ||||||||
Sbjct: 600 aaggccgtcatcaaggagacactccggcttcacatgcctgcgccgcttctggtgccccat 541
Query: 362 ctctccatggccgactgcaccatacaagggtacacgataccgtcgggaacacgaaccatc 421
||| |||||||||||||| |||| | || ||||| |||||||| || ||||| ||||
Sbjct: 540 ctcgccatggccgactgcgtcataaacggctacaccataccgtccgggacacgcgtcatc 481
Query: 422 gtcaacagctgggctctcgcgagggaccccagctgctgggagagagccgaggagttcatg 481
||||| ||| ||||| |||||||||| |||||| |||||||||| || ||||||||| ||
Sbjct: 480 gtcaatagccgggctatcgcgagggatcccagcagctgggagagcgcggaggagttcctg 421
Query: 482 cccgagcgcttcatggagggcggcagtgccgcagccatgga 522
|| |||||||||||| | ||||||||||| || ||||||||
Sbjct: 420 cctgagcgcttcatgcaaggcggcagtgctgcggccatgga 380
>gb|AV921112.1|AV921112 AV921112 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1a14 3', mRNA sequence
Length = 746
Score = 145 bits (73), Expect = 2e-033
Identities = 190/229 (82%)
Strand = Plus / Minus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctcg 353
||||||| ||||| ||| |||| ||||| || ||||| |||||||| || || || || |
Sbjct: 589 cctacctaaaggccgtcatcaaggagacactccggcttcacatgcctgcgccgcttctgg 530
Query: 354 tgccccacctctccatggccgactgcaccatacaagggtacacgataccgtcgggaacac 413
||||||| ||| |||||||||| ||| |||| | || ||||| |||||||| || ||||
Sbjct: 529 tgccccatctcgccatggccgattgcgtcataaacggctacaccataccgtccgggacac 470
Query: 414 gaaccatcgtcaacagctgggctctcgcgagggaccccagctgctgggagagagccgagg 473
| ||||||||| ||| ||||| |||||||||| |||||| |||||||||| || ||||
Sbjct: 469 gcgtcatcgtcaatagccgggctatcgcgagggatcccagcagctgggagagcgcggagg 410
Query: 474 agttcatgcccgagcgcttcatggagggcggcagtgccgcagccatgga 522
||||| |||| |||||||||||| | ||||||||||| || ||||||||
Sbjct: 409 agttcctgcctgagcgcttcatgcaaggcggcagtgctgcggccatgga 361
Score = 109 bits (55), Expect = 1e-022
Identities = 88/99 (88%)
Strand = Plus / Minus
Query: 139 agctggcactgacacatccttcatagtgctggaatacgccatggttcagctgatgcgaaa 198
||||||||| |||||||| | ||||||| ||||||||||||||| || ||| |||| |||
Sbjct: 741 agctggcacggacacatcatacatagtgatggaatacgccatggctcggctcatgcaaaa 682
Query: 199 cccccacctgatgaccaagctacaagccgaggtgaggag 237
|||| |||| |||||||||||||| ||||||||||||||
Sbjct: 681 ccccgacctcatgaccaagctacaggccgaggtgaggag 643
>gb|BU968861.1|BU968861 HB08M23r BC Hordeum vulgare subsp. vulgare cDNA clone HB08M23
5-PRIME, mRNA sequence
Length = 624
Score = 145 bits (73), Expect = 2e-033
Identities = 190/229 (82%)
Strand = Plus / Plus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctcg 353
||||||| ||||| || |||| ||||| || ||||| |||||||| || || || || |
Sbjct: 291 cctacctaaaggccgtgatcaaggagacactccggcttcacatgcctgcgccgcttctgg 350
Query: 354 tgccccacctctccatggccgactgcaccatacaagggtacacgataccgtcgggaacac 413
||||||| ||| ||||||||||||||| |||| | || ||||| |||||||| || || |
Sbjct: 351 tgccccatctcgccatggccgactgcatcataaacggctacaccataccgtccgggacgc 410
Query: 414 gaaccatcgtcaacagctgggctctcgcgagggaccccagctgctgggagagagccgagg 473
| ||||||||| ||| ||||| |||||||||| |||||| |||||||||| || ||||
Sbjct: 411 gcgtcatcgtcaatagccgggctatcgcgagggatcccagcagctgggagagcgcggagg 470
Query: 474 agttcatgcccgagcgcttcatggagggcggcagtgccgcagccatgga 522
||||| |||| |||||||||||| | ||||||||||| || ||||||||
Sbjct: 471 agttcctgcctgagcgcttcatgcaaggcggcagtgctgcggccatgga 519
Score = 135 bits (68), Expect = 2e-030
Identities = 137/160 (85%)
Strand = Plus / Plus
Query: 78 ttcagcaagagtacaacctgacgagagatcagatcaaggcgcagctggtggtcatgttcg 137
||||| ||||||||||||| || || || ||| |||| || ||| ||||| ||||||| |
Sbjct: 78 ttcagaaagagtacaacctcacaagggaacaggtcaaagctcagttggtgatcatgtttg 137
Query: 138 aagctggcactgacacatccttcatagtgctggaatacgccatggttcagctgatgcgaa 197
||||||||| |||||||| | ||||||| ||||||||||||||| || ||| |||| ||
Sbjct: 138 gagctggcacggacacatcatacatagtgatggaatacgccatggctcggctcatgcaaa 197
Query: 198 acccccacctgatgaccaagctacaagccgaggtgaggag 237
||||| |||| |||||||||||||| ||||||||||||||
Sbjct: 198 accccgacctcatgaccaagctacaggccgaggtgaggag 237
>gb|AV920965.1|AV920965 AV920965 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16e06 3', mRNA sequence
Length = 594
Score = 141 bits (71), Expect = 3e-032
Identities = 176/211 (83%)
Strand = Plus / Minus
Query: 312 tcaaagagacgctgcggctccacatgccggctccactcctcgtgccccacctctccatgg 371
|||| ||||| || ||||| |||||||| || || || || |||||||| ||| ||||||
Sbjct: 589 tcaaggagacactccggcttcacatgcctgcgccgcttctggtgccccatctcgccatgg 530
Query: 372 ccgactgcaccatacaagggtacacgataccgtcgggaacacgaaccatcgtcaacagct 431
|||||||| |||| | || ||||| |||||||| || ||||| ||||||||| |||
Sbjct: 529 ccgactgcgtcataaacggctacaccataccgtccgggacacgcgtcatcgtcaatagcc 470
Query: 432 gggctctcgcgagggaccccagctgctgggagagagccgaggagttcatgcccgagcgct 491
||||| |||||||||| |||||| |||||||||| || ||||||||| |||| |||||||
Sbjct: 469 gggctatcgcgagggatcccagcagctgggagagcgcggaggagttcctgcctgagcgct 410
Query: 492 tcatggagggcggcagtgccgcagccatgga 522
||||| | ||||||||||| || ||||||||
Sbjct: 409 tcatgcaaggcggcagtgctgcggccatgga 379
>gb|AV913374.1|AV913374 AV913374 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21n09 5', mRNA sequence
Length = 522
Score = 137 bits (69), Expect = 5e-031
Identities = 165/197 (83%)
Strand = Plus / Plus
Query: 326 cggctccacatgccggctccactcctcgtgccccacctctccatggccgactgcaccata 385
||||| |||||||| || || || || |||||||| ||| |||||||||||||| ||||
Sbjct: 19 cggcttcacatgcctgcgccgcttctggtgccccatctcgccatggccgactgcgtcata 78
Query: 386 caagggtacacgataccgtcgggaacacgaaccatcgtcaacagctgggctctcgcgagg 445
| || ||||| |||||||| || ||||| ||||||||| ||| ||||| ||||||||
Sbjct: 79 aacggctacaccataccgtccgggacacgcgtcatcgtcaatagccgggctatcgcgagg 138
Query: 446 gaccccagctgctgggagagagccgaggagttcatgcccgagcgcttcatggagggcggc 505
|| |||||| |||||||||| || ||||||||| |||| |||||||||||| | ||||||
Sbjct: 139 gatcccagcagctgggagagcgcggaggagttcctgcctgagcgcttcatgcaaggcggc 198
Query: 506 agtgccgcagccatgga 522
||||| || ||||||||
Sbjct: 199 agtgctgcggccatgga 215
>gb|AV918673.1|AV918673 AV918673 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21n09 3', mRNA sequence
Length = 583
Score = 137 bits (69), Expect = 5e-031
Identities = 165/197 (83%)
Strand = Plus / Minus
Query: 326 cggctccacatgccggctccactcctcgtgccccacctctccatggccgactgcaccata 385
||||| |||||||| || || || || |||||||| ||| |||||||||||||| ||||
Sbjct: 575 cggcttcacatgcctgcgccgcttctggtgccccatctcgccatggccgactgcgtcata 516
Query: 386 caagggtacacgataccgtcgggaacacgaaccatcgtcaacagctgggctctcgcgagg 445
| || ||||| |||||||| || ||||| ||||||||| ||| ||||| ||||||||
Sbjct: 515 aacggctacaccataccgtccgggacacgcgtcatcgtcaatagccgggctatcgcgagg 456
Query: 446 gaccccagctgctgggagagagccgaggagttcatgcccgagcgcttcatggagggcggc 505
|| |||||| |||||||||| || ||||||||| |||| |||||||||||| | ||||||
Sbjct: 455 gatcccagcagctgggagagcgcggaggagttcctgcctgagcgcttcatgcaaggcggc 396
Query: 506 agtgccgcagccatgga 522
||||| || ||||||||
Sbjct: 395 agtgctgcggccatgga 379
>gb|BF628635.2|BF628635 HVSMEb0006N15f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0006N15f, mRNA sequence
Length = 710
Score = 135 bits (68), Expect = 2e-030
Identities = 137/160 (85%)
Strand = Plus / Plus
Query: 78 ttcagcaagagtacaacctgacgagagatcagatcaaggcgcagctggtggtcatgttcg 137
||||| ||||||||||||| || || || ||| |||| || ||| ||||| ||||||| |
Sbjct: 135 ttcagaaagagtacaacctcacaagggagcaggtcaaagctcagttggtgatcatgtttg 194
Query: 138 aagctggcactgacacatccttcatagtgctggaatacgccatggttcagctgatgcgaa 197
||||||||| |||||||| | ||||||| ||||||||||||||| || ||| |||| ||
Sbjct: 195 gagctggcacggacacatcatacatagtgatggaatacgccatggctcggctcatgcaaa 254
Query: 198 acccccacctgatgaccaagctacaagccgaggtgaggag 237
||||| |||| |||||||||||||| ||||||||||||||
Sbjct: 255 accccgacctcatgaccaagctacaggccgaggtgaggag 294
Score = 129 bits (65), Expect = 1e-028
Identities = 188/229 (82%)
Strand = Plus / Plus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctcg 353
||||||| ||||| || |||| ||||| || ||||| |||||||| || || || || |
Sbjct: 348 cctacctaaaggccgtgatcaaggagacactccggcttcacatgcctgcgccgcttctgg 407
Query: 354 tgccccacctctccatggccgactgcaccatacaagggtacacgataccgtcgggaacac 413
||||||| ||| |||||||||||||| |||| | || ||||| |||||||| || || |
Sbjct: 408 tgccccatctcgccatggccgactgcgtcataaacggctacaccataccgtccgggacgc 467
Query: 414 gaaccatcgtcaacagctgggctctcgcgagggaccccagctgctgggagagagccgagg 473
| ||||||||| ||| ||||| |||||||||| |||| | |||||||||| || ||||
Sbjct: 468 gcgtcatcgtcaatagccgggctatcgcgagggatcccaacagctgggagagcgcggagg 527
Query: 474 agttcatgcccgagcgcttcatggagggcggcagtgccgcagccatgga 522
||||| |||| |||||||||||| | ||||||||||| || ||||||||
Sbjct: 528 agttcctgcctgagcgcttcatgcaaggcggcagtgctgcggccatgga 576
>gb|BG301188.1|BG301188 HVSMEb0019N18f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0019N18f, mRNA sequence
Length = 925
Score = 135 bits (68), Expect = 2e-030
Identities = 137/160 (85%)
Strand = Plus / Plus
Query: 78 ttcagcaagagtacaacctgacgagagatcagatcaaggcgcagctggtggtcatgttcg 137
||||| ||||||||||||| || || || ||| |||| || ||| ||||| ||||||| |
Sbjct: 331 ttcagaaagagtacaacctcacaagggagcaggtcaaagctcagttggtgatcatgtttg 390
Query: 138 aagctggcactgacacatccttcatagtgctggaatacgccatggttcagctgatgcgaa 197
||||||||| |||||||| | ||||||| ||||||||||||||| || ||| |||| ||
Sbjct: 391 gagctggcacggacacatcatacatagtgatggaatacgccatggctcggctcatgcaaa 450
Query: 198 acccccacctgatgaccaagctacaagccgaggtgaggag 237
||||| |||| |||||||||||||| ||||||||||||||
Sbjct: 451 accccgacctcatgaccaagctacaggccgaggtgaggag 490
Score = 65.9 bits (33), Expect = 1e-009
Identities = 164/205 (80%), Gaps = 2/205 (0%)
Strand = Plus / Plus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctcg 353
||||||| ||||| || |||| ||||| || ||||| |||||||| || || || || |
Sbjct: 544 cctacctaaaggccgtgatcaaggagacactccggcttcacatgcctgcgccgcttctgg 603
Query: 354 tgccccacctctccatggccgactgcaccatacaagggtacacgataccgtcgggaacac 413
||||||| ||| |||||||||||||| |||| | || ||||| |||||||| || || |
Sbjct: 604 tgccccatctcgccatggccgactgcgtcataaacggctacaccataccgtccgggacgc 663
Query: 414 gaaccatcgtc-aacagctgggctctcgcgagggaccccag-ctgctgggagagagccga 471
| ||||||| || ||| ||||| |||||||||| ||||| | ||||||||| || ||
Sbjct: 664 gcgtcatcgtcaaatagccgggctatcgcgagggatcccagccaactgggagagcgcgga 723
Query: 472 ggagttcatgcccgagcgcttcatg 496
||| || |||| ||||||||||||
Sbjct: 724 ggaagtcctgcctgagcgcttcatg 748
>gb|BJ463196.1|BJ463196 BJ463196 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags26d07 5', mRNA sequence
Length = 578
Score = 135 bits (68), Expect = 2e-030
Identities = 137/160 (85%)
Strand = Plus / Plus
Query: 78 ttcagcaagagtacaacctgacgagagatcagatcaaggcgcagctggtggtcatgttcg 137
||||| ||||||||||||| || || || ||| |||| || ||| ||||| ||||||| |
Sbjct: 189 ttcagaaagagtacaacctcacaagggagcaggtcaaagctcagttggtgatcatgtttg 248
Query: 138 aagctggcactgacacatccttcatagtgctggaatacgccatggttcagctgatgcgaa 197
||||||||| |||||||| | ||||||| ||||||||||||||| || ||| |||| ||
Sbjct: 249 gagctggcacggacacatcatacatagtgatggaatacgccatggctcggctcatgcaaa 308
Query: 198 acccccacctgatgaccaagctacaagccgaggtgaggag 237
||||| |||| |||||||||||||| ||||||||||||||
Sbjct: 309 accccgacctcatgaccaagctacaggccgaggtgaggag 348
Score = 103 bits (52), Expect = 7e-021
Identities = 142/172 (82%)
Strand = Plus / Plus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctcg 353
||||||| ||||| ||| |||| ||||| || ||||| |||||||| || || || || |
Sbjct: 402 cctacctaaaggccgtcatcaaggagacactccggcttcacatgcctgcgccgcttctgg 461
Query: 354 tgccccacctctccatggccgactgcaccatacaagggtacacgataccgtcgggaacac 413
||||||| ||| |||||||||||||| |||| | || ||||| |||||||| || ||||
Sbjct: 462 tgccccatctcgccatggccgactgcgtcataaacggctacaccataccgtccgggacac 521
Query: 414 gaaccatcgtcaacagctgggctctcgcgagggaccccagctgctgggagag 465
| ||||||||| ||| ||||| |||||||||| |||||| ||||||||||
Sbjct: 522 gcgtcatcgtcaatagccgggctatcgcgagggatcccagcagctgggagag 573
>gb|AV913156.1|AV913156 AV913156 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21b10 5', mRNA sequence
Length = 548
Score = 121 bits (61), Expect = 3e-026
Identities = 137/161 (85%), Gaps = 1/161 (0%)
Strand = Plus / Plus
Query: 78 ttcagcaagagtacaacctgacgagagatcagatcaaggcgcagctggtggtcatgttcg 137
||||| ||||||||||||| || || || ||| |||| || ||| ||||| ||||||| |
Sbjct: 342 ttcagaaagagtacaacctcacaagggagcaggtcaaagctcagttggtgatcatgtttg 401
Query: 138 aagctggcactgacacatccttcatagtgctggaatacgccatggttcagctgatgcgaa 197
||||||||| |||||||| | ||||||| ||||||||||||||| || ||| |||| ||
Sbjct: 402 gagctggcacggacacatcatacatagtgatggaatacgccatggctcggctcatgcaaa 461
Query: 198 acccccacctgatgaccaagctacaag-ccgaggtgaggag 237
||||| |||| |||||||||||||| | |||||||||||||
Sbjct: 462 accccgacctcatgaccaagctacaggcccgaggtgaggag 502
>gb|AV915851.1|AV915851 AV915851 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags16e06 5', mRNA sequence
Length = 698
Score = 121 bits (61), Expect = 3e-026
Identities = 137/161 (85%), Gaps = 1/161 (0%)
Strand = Plus / Plus
Query: 78 ttcagcaagagtacaacctgacgagagatcagatcaaggcgcagctggtggtcatgttcg 137
||||| ||||||||||||| || || || ||| |||| || ||| ||||| ||||||| |
Sbjct: 494 ttcagaaagagtacaacctcacaagggagcaggtcaaagctcagttggtgatcatgtttg 553
Query: 138 aagctggcactgacacatccttcatagtgctggaatacgccatggttcagctgatgcgaa 197
||||||||| |||||||| | ||||||| ||||||||||||||| || ||| |||| ||
Sbjct: 554 gagctggcacggacacatcatacatagtgatggaatacgccatggctcggctcatgcaaa 613
Query: 198 acccccacctgatgaccaagctacaag-ccgaggtgaggag 237
||||| |||| |||||||||||||| | |||||||||||||
Sbjct: 614 accccgacctcatgaccaagctacaggcccgaggtgaggag 654
>gb|AV916927.1|AV916927 AV916927 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20c01 5', mRNA sequence
Length = 533
Score = 117 bits (59), Expect = 4e-025
Identities = 101/115 (87%)
Strand = Plus / Plus
Query: 129 tcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatggttcagc 188
||||||| ||||||||||| |||||||| |||||| ||||||||||||||||||| ||
Sbjct: 14 tcatgtttgaagctggcacggacacatcaaccatagtactggaatacgccatggttcggc 73
Query: 189 tgatgcgaaacccccacctgatgaccaagctacaagccgaggtgaggagcaccat 243
|||||| ||||||| | | ||| ||| |||||||||||||||||||||||||||
Sbjct: 74 tgatgcagaacccccgcgtcatggccatgctacaagccgaggtgaggagcaccat 128
Score = 99.6 bits (50), Expect = 1e-019
Identities = 185/230 (80%)
Strand = Plus / Plus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctcg 353
||||||| |||||||| |||| ||||| || ||||| |||||||||| || ||| | |
Sbjct: 176 cctacctaaaggcagtgatcaaggagacactccggcttcacatgccggggccgctcatgg 235
Query: 354 tgccccacctctccatggccgactgcaccatacaagggtacacgataccgtcgggaacac 413
||||||| |||||||||| ||| |||| |||| | || ||||||||||| ||||| || |
Sbjct: 236 tgccccatctctccatggacgaatgcatcataaacggctacacgataccatcggggacgc 295
Query: 414 gaaccatcgtcaacagctgggctctcgcgagggaccccagctgctgggagagagccgagg 473
| || || |||||| || ||| || |||||| || ||| ||||||||| | ||||
Sbjct: 296 gcactttcatcaacacctatgctatccagagggatcctagcaactgggagagcccagagg 355
Query: 474 agttcatgcccgagcgcttcatggagggcggcagtgccgcagccatggac 523
|||||||||| ||||| |||||||| |||||||| || || |||||||||
Sbjct: 356 agttcatgcctgagcggttcatggaaggcggcagcgctgccgccatggac 405
>gb|BJ466861.1|BJ466861 BJ466861 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags34j09 3', mRNA sequence
Length = 719
Score = 117 bits (59), Expect = 4e-025
Identities = 101/115 (87%)
Strand = Plus / Minus
Query: 129 tcatgttcgaagctggcactgacacatccttcatagtgctggaatacgccatggttcagc 188
||||||| ||||||||||| |||||||| |||||| ||||||||||||||||||| ||
Sbjct: 701 tcatgtttgaagctggcacggacacatcaaccatagtactggaatacgccatggttcggc 642
Query: 189 tgatgcgaaacccccacctgatgaccaagctacaagccgaggtgaggagcaccat 243
|||||| ||||||| | | ||| ||| |||||||||||||||||||||||||||
Sbjct: 641 tgatgcagaacccccgcgtcatggccatgctacaagccgaggtgaggagcaccat 587
Score = 99.6 bits (50), Expect = 1e-019
Identities = 185/230 (80%)
Strand = Plus / Minus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctcg 353
||||||| |||||||| |||| ||||| || ||||| |||||||||| || ||| | |
Sbjct: 539 cctacctaaaggcagtgatcaaggagacactccggcttcacatgccggggccgctcatgg 480
Query: 354 tgccccacctctccatggccgactgcaccatacaagggtacacgataccgtcgggaacac 413
||||||| |||||||||| ||| |||| |||| | || ||||||||||| ||||| || |
Sbjct: 479 tgccccatctctccatggacgaatgcatcataaacggctacacgataccatcggggacgc 420
Query: 414 gaaccatcgtcaacagctgggctctcgcgagggaccccagctgctgggagagagccgagg 473
| || || |||||| || ||| || |||||| || ||| ||||||||| | ||||
Sbjct: 419 gcactttcatcaacacctatgctatccagagggatcctagcaactgggagagcccagagg 360
Query: 474 agttcatgcccgagcgcttcatggagggcggcagtgccgcagccatggac 523
|||||||||| ||||| |||||||| |||||||| || || |||||||||
Sbjct: 359 agttcatgcctgagcggttcatggaaggcggcagcgctgccgccatggac 310
>gb|AV930901.1|AV930901 AV930901 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd25l12 3', mRNA sequence
Length = 470
Score = 109 bits (55), Expect = 1e-022
Identities = 112/131 (85%)
Strand = Plus / Minus
Query: 392 tacacgataccgtcgggaacacgaaccatcgtcaacagctgggctctcgcgagggacccc 451
||||| |||||||| || ||||| ||||||||| ||| ||||| |||||||||| |||
Sbjct: 467 tacaccataccgtccgggacacgcgtcatcgtcaatagccgggctatcgcgagggatccc 408
Query: 452 agctgctgggagagagccgaggagttcatgcccgagcgcttcatggagggcggcagtgcc 511
||| |||||||||| || ||||||||| |||| |||||||||||| | |||||||||||
Sbjct: 407 agcagctgggagagcgcggaggagttcctgcctgagcgcttcatgcaaggcggcagtgct 348
Query: 512 gcagccatgga 522
|| ||||||||
Sbjct: 347 gcggccatgga 337
>gb|CA016039.1|CA016039 HV10M21u HV Hordeum vulgare subsp. vulgare cDNA clone HV10M21
3-PRIME, mRNA sequence
Length = 528
Score = 105 bits (53), Expect = 2e-021
Identities = 92/105 (87%)
Strand = Plus / Minus
Query: 418 catcgtcaacagctgggctctcgcgagggaccccagctgctgggagagagccgaggagtt 477
||||||||| ||| ||||| |||||||||| |||||| |||||||||| || ||||||||
Sbjct: 508 catcgtcaatagccgggctatcgcgagggatcccagcagctgggagagcgcggaggagtt 449
Query: 478 catgcccgagcgcttcatggagggcggcagtgccgcagccatgga 522
| |||| |||||||||||| | ||||||||||| || ||||||||
Sbjct: 448 cctgcctgagcgcttcatgcaaggcggcagtgctgcggccatgga 404
>gb|AV913934.1|AV913934 AV913934 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23m23 5', mRNA sequence
Length = 660
Score = 99.6 bits (50), Expect = 1e-019
Identities = 185/230 (80%)
Strand = Plus / Plus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctcg 353
||||||| |||||||| |||| ||||| || ||||| |||||||||| || ||| | |
Sbjct: 162 cctacctaaaggcagtgatcaaggagacactccggcttcacatgccggggccgctcatgg 221
Query: 354 tgccccacctctccatggccgactgcaccatacaagggtacacgataccgtcgggaacac 413
||||||| |||||||||| ||| |||| |||| | || ||||||||||| ||||| || |
Sbjct: 222 tgccccatctctccatggacgaatgcatcataaacggctacacgataccatcggggacgc 281
Query: 414 gaaccatcgtcaacagctgggctctcgcgagggaccccagctgctgggagagagccgagg 473
| || || |||||| || ||| || |||||| || ||| ||||||||| | ||||
Sbjct: 282 gcactttcatcaacacctatgctatccagagggatcctagcaactgggagagcccagagg 341
Query: 474 agttcatgcccgagcgcttcatggagggcggcagtgccgcagccatggac 523
|||||||||| ||||| |||||||| |||||||| || || |||||||||
Sbjct: 342 agttcatgcctgagcggttcatggaaggcggcagcgctgccgccatggac 391
Score = 91.7 bits (46), Expect = 3e-017
Identities = 73/82 (89%)
Strand = Plus / Plus
Query: 162 tagtgctggaatacgccatggttcagctgatgcgaaacccccacctgatgaccaagctac 221
|||| ||||||||||||||||||| |||||||| ||||||| | | ||| ||| |||||
Sbjct: 33 tagtactggaatacgccatggttcggctgatgcagaacccccgcgtcatggccatgctac 92
Query: 222 aagccgaggtgaggagcaccat 243
||||||||||||||||||||||
Sbjct: 93 aagccgaggtgaggagcaccat 114
>gb|AV918176.1|AV918176 AV918176 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20c01 3', mRNA sequence
Length = 655
Score = 99.6 bits (50), Expect = 1e-019
Identities = 185/230 (80%)
Strand = Plus / Minus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctcg 353
||||||| |||||||| |||| ||||| || ||||| |||||||||| || ||| | |
Sbjct: 575 cctacctaaaggcagtgatcaaggagacactccggcttcacatgccggggccgctcatgg 516
Query: 354 tgccccacctctccatggccgactgcaccatacaagggtacacgataccgtcgggaacac 413
||||||| |||||||||| ||| |||| |||| | || ||||||||||| ||||| || |
Sbjct: 515 tgccccatctctccatggacgaatgcatcataaacggctacacgataccatcggggacgc 456
Query: 414 gaaccatcgtcaacagctgggctctcgcgagggaccccagctgctgggagagagccgagg 473
| || || |||||| || ||| || |||||| || ||| ||||||||| | ||||
Sbjct: 455 gcactttcatcaacacctatgctatccagagggatcctagcaactgggagagcccagagg 396
Query: 474 agttcatgcccgagcgcttcatggagggcggcagtgccgcagccatggac 523
|||||||||| ||||| |||||||| |||||||| || || |||||||||
Sbjct: 395 agttcatgcctgagcggttcatggaaggcggcagcgctgccgccatggac 346
Score = 54.0 bits (27), Expect = 6e-006
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 217 gctacaagccgaggtgaggagcaccat 243
|||||||||||||||||||||||||||
Sbjct: 649 gctacaagccgaggtgaggagcaccat 623
>gb|AV918301.1|AV918301 AV918301 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20j07 3', mRNA sequence
Length = 660
Score = 99.6 bits (50), Expect = 1e-019
Identities = 185/230 (80%)
Strand = Plus / Minus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctcg 353
||||||| |||||||| |||| ||||| || ||||| |||||||||| || ||| | |
Sbjct: 540 cctacctaaaggcagtgatcaaggagacactccggcttcacatgccggggccgctcatgg 481
Query: 354 tgccccacctctccatggccgactgcaccatacaagggtacacgataccgtcgggaacac 413
||||||| |||||||||| ||| |||| |||| | || ||||||||||| ||||| || |
Sbjct: 480 tgccccatctctccatggacgaatgcatcataaacggctacacgataccatcggggacgc 421
Query: 414 gaaccatcgtcaacagctgggctctcgcgagggaccccagctgctgggagagagccgagg 473
| || || |||||| || ||| || |||||| || ||| ||||||||| | ||||
Sbjct: 420 gcactttcatcaacacctatgctatccagagggatcctagcaactgggagagcccagagg 361
Query: 474 agttcatgcccgagcgcttcatggagggcggcagtgccgcagccatggac 523
|||||||||| ||||| |||||||| |||||||| || || |||||||||
Sbjct: 360 agttcatgcctgagcggttcatggaaggcggcagcgctgccgccatggac 311
Score = 81.8 bits (41), Expect = 2e-014
Identities = 65/73 (89%)
Strand = Plus / Minus
Query: 171 aatacgccatggttcagctgatgcgaaacccccacctgatgaccaagctacaagccgagg 230
||||||||||||||| |||||||| ||||||| | | ||| ||| ||||||||||||||
Sbjct: 660 aatacgccatggttcggctgatgcagaacccccgcgtcatggccatgctacaagccgagg 601
Query: 231 tgaggagcaccat 243
|||||||||||||
Sbjct: 600 tgaggagcaccat 588
>gb|AV919647.1|AV919647 AV919647 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6p16 3', mRNA sequence
Length = 703
Score = 99.6 bits (50), Expect = 1e-019
Identities = 185/230 (80%)
Strand = Plus / Minus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctcg 353
||||||| |||||||| |||| ||||| || ||||| |||||||||| || ||| | |
Sbjct: 557 cctacctaaaggcagtgatcaaggagacactccggcttcacatgccggggccgctcatgg 498
Query: 354 tgccccacctctccatggccgactgcaccatacaagggtacacgataccgtcgggaacac 413
||||||| |||||||||| ||| |||| |||| | || ||||||||||| ||||| || |
Sbjct: 497 tgccccatctctccatggacgaatgcatcataaacggctacacgataccatcggggacgc 438
Query: 414 gaaccatcgtcaacagctgggctctcgcgagggaccccagctgctgggagagagccgagg 473
| || || |||||| || ||| || |||||| || ||| ||||||||| | ||||
Sbjct: 437 gcactttcatcaacacctatgctatccagagggatcctagcaactgggagagcccagagg 378
Query: 474 agttcatgcccgagcgcttcatggagggcggcagtgccgcagccatggac 523
|||||||||| ||||| |||||||| |||||||| || || |||||||||
Sbjct: 377 agttcatgcctgagcggttcatggaaggcggcagcgctgccgccatggac 328
Score = 95.6 bits (48), Expect = 2e-018
Identities = 75/84 (89%)
Strand = Plus / Minus
Query: 160 catagtgctggaatacgccatggttcagctgatgcgaaacccccacctgatgaccaagct 219
|||||| ||||||||||||||||||| |||||||| ||||||| | | ||| ||| |||
Sbjct: 688 catagtactggaatacgccatggttcggctgatgcagaacccccgcgtcatggccatgct 629
Query: 220 acaagccgaggtgaggagcaccat 243
||||||||||||||||||||||||
Sbjct: 628 acaagccgaggtgaggagcaccat 605
>gb|AV922405.1|AV922405 AV922405 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18b09 3', mRNA sequence
Length = 618
Score = 99.6 bits (50), Expect = 1e-019
Identities = 185/230 (80%)
Strand = Plus / Minus
Query: 294 cctacctcaaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctcg 353
||||||| |||||||| |||| ||||| || ||||| |||||||||| || ||| | |
Sbjct: 576 cctacctaaaggcagtgatcaaggagacactccggcttcacatgccggggccgctcatgg 517
Query: 354 tgccccacctctccatggccgactgcaccatacaagggtacacgataccgtcgggaacac 413
||||||| |||||||||| ||| |||| |||| | || ||||||||||| ||||| || |
Sbjct: 516 tgccccatctctccatggacgaatgcatcataaacggctacacgataccatcggggacgc 457
Query: 414 gaaccatcgtcaacagctgggctctcgcgagggaccccagctgctgggagagagccgagg 473
| || || |||||| || ||| || |||||| || ||| ||||||||| | ||||
Sbjct: 456 gcactttcatcaacacctatgctatccagagggatcctagcaactgggagagcccagagg 397
Query: 474 agttcatgcccgagcgcttcatggagggcggcagtgccgcagccatggac 523
|||||||||| ||||| |||||||| |||||||| || || |||||||||
Sbjct: 396 agttcatgcctgagcggttcatggaaggcggcagcgctgccgccatggac 347
>gb|AV921548.1|AV921548 AV921548 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23m23 3', mRNA sequence
Length = 560
Score = 81.8 bits (41), Expect = 2e-014
Identities = 171/213 (80%), Gaps = 1/213 (0%)
Strand = Plus / Minus
Query: 312 tcaaagagacgctgcggctccacatgccggctccactcctcgtgccccacctctccatgg 371
|||| ||||| || ||||| |||||||||| || ||| | |||||||| ||||||||||
Sbjct: 555 tcaaggagacactccggcttcacatgccggggccgctcatggtgccccatctctccatgg 496
Query: 372 ccgactgcaccatacaaggg-tacacgataccgtcgggaacacgaaccatcgtcaacagc 430
||| |||| |||| | ||| ||||||||||| ||||| || || || || |||||| |
Sbjct: 495 acgaatgcatcataaacgggctacacgataccatcggggacgcgcactttcatcaacacc 436
Query: 431 tgggctctcgcgagggaccccagctgctgggagagagccgaggagttcatgcccgagcgc 490
| ||| || |||||| || ||| ||||||||| | |||||||||||||| |||||
Sbjct: 435 tatgctatccagagggatcctagcaactgggagagcccagaggagttcatgcctgagcgg 376
Query: 491 ttcatggagggcggcagtgccgcagccatggac 523
|||||||| |||||||| || || |||||||||
Sbjct: 375 ttcatggaaggcggcagcgctgccgccatggac 343
>gb|BJ453643.1|BJ453643 BJ453643 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak43p03 5', mRNA sequence
Length = 589
Score = 75.8 bits (38), Expect = 2e-012
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 191 atgcgaaacccccacctgatgaccaagctacaagccgaggtgaggagcac 240
|||| |||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 5 atgcaaaacccccacctcatgaacaagctacaagccgaggtgaggagcac 54
Score = 58.0 bits (29), Expect = 4e-007
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 312 tcaaagagacgctgcggctccacatgccggctccactcctcgtgccccacctctccatgg 371
|||||||||| || ||||||| ||||| | |||||||| || ||||||||||||||||
Sbjct: 123 tcaaagagacactcaggctccatatgcctgggccactcctngtaccccacctctccatgg 182
Query: 372 ccga 375
||||
Sbjct: 183 ccga 186
>gb|BM443957.2|BM443957 EBem09_SQ002_E09_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ002_E09 5', mRNA sequence
Length = 306
Score = 69.9 bits (35), Expect = 9e-011
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 444 gggaccccagctgctgggagagagccgaggagttcatgcccgagcgcttcatggagggcg 503
|||| |||||| ||||||| || || ||||||||| |||| |||||||||||| | ||||
Sbjct: 1 gggatcccagcagctgggacagcgcggaggagttcctgcctgagcgcttcatgcaaggcg 60
Query: 504 gcagtgccgcagccatgga 522
||||||| || ||||||||
Sbjct: 61 gcagtgctgcggccatgga 79
>gb|BQ471556.1|BQ471556 HV02M13r HV Hordeum vulgare subsp. vulgare cDNA clone HV02M13
5-PRIME, mRNA sequence
Length = 652
Score = 67.9 bits (34), Expect = 4e-010
Identities = 76/90 (84%)
Strand = Plus / Plus
Query: 56 ttcatccatgtcttgctctcccttcagcaagagtacaacctgacgagagatcagatcaag 115
|||||||| |||||||| || ||||||||||||||||||| || ||||| || |||||
Sbjct: 563 ttcatccacgtcttgctttctgttcagcaagagtacaacctcacaagagaccatatcaaa 622
Query: 116 gcgcagctggtggtcatgttcgaagctggc 145
|| ||| || || ||||||| |||||||||
Sbjct: 623 gctcagttgctgatcatgtttgaagctggc 652
>gb|BJ452936.1|BJ452936 BJ452936 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak40p23 5', mRNA sequence
Length = 502
Score = 63.9 bits (32), Expect = 6e-009
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 312 tcaaagagacgctgcggctccacatgccggctccactcctcgtgccccacctctccatgg 371
|||||||||| || ||||||| ||||| | ||||||||||| ||||||||||||||||
Sbjct: 80 tcaaagagacactcaggctccatatgcctgggccactcctcgtaccccacctctccatgg 139
Query: 372 ccga 375
||||
Sbjct: 140 ccga 143
>gb|CA009631.1|CA009631 HU14K18r HU Hordeum vulgare subsp. vulgare cDNA clone HU14K18
5-PRIME, mRNA sequence
Length = 630
Score = 61.9 bits (31), Expect = 2e-008
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 293 tcctacctcaaggcagtcgtcaaagagacgctgcggctccacatgccggctccactcctc 352
|||||||||||||| || || || |||||||| ||||| ||| |||||| || ||||||
Sbjct: 55 tcctacctcaaggccgtggtaaaggagacgctccggcttcacccgccggcgccgctcctc 114
Query: 353 gtgccccacctctccatggccga 375
|| || ||||| |||||||||||
Sbjct: 115 gtcccgcacctatccatggccga 137
>gb|CA015705.1|CA015705 HV12J09u HV Hordeum vulgare subsp. vulgare cDNA clone HV12J09
3-PRIME, mRNA sequence
Length = 518
Score = 61.9 bits (31), Expect = 2e-008
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 457 ctgggagagagccgaggagttcatgcccgagcgcttcatggagggcggcagtgccgcagc 516
||||||||| | |||||||||||||| ||||| |||||||| |||||||| || || ||
Sbjct: 448 ctgggagagcccagaggagttcatgcctgagcggttcatggaaggcggcagcgctgccgc 389
Query: 517 catggac 523
|||||||
Sbjct: 388 catggac 382
>gb|BJ460485.1|BJ460485 BJ460485 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak40p23 3', mRNA sequence
Length = 461
Score = 58.0 bits (29), Expect = 4e-007
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 312 tcaaagagacgctgcggctccacatgccggctccactcctcgtgccccacctctccatgg 371
|||||||||| || ||||||| |||| | ||||||||||| ||||||||||||||||
Sbjct: 432 tcaaagagacactcaggctccatatgcntgggccactcctcgtaccccacctctccatgg 373
Query: 372 ccga 375
||||
Sbjct: 372 ccga 369
>gb|BE519761.3|BE519761 HV_CEb0021C04f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0021C04f, mRNA sequence
Length = 706
Score = 46.1 bits (23), Expect = 0.001
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 467 gccgaggagttcatgcccgagcgcttc 493
||||| |||||||||||||||||||||
Sbjct: 512 gccgacgagttcatgcccgagcgcttc 538
>gb|AV917596.1|AV917596 AV917596 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10j16 3', mRNA sequence
Length = 644
Score = 44.1 bits (22), Expect = 0.005
Identities = 46/54 (85%)
Strand = Plus / Minus
Query: 529 caaggggaacgacttccagtacataccgttcggcgcagggagaaggatgtgccc 582
||||||||| ||||| |||| | | |||||||| ||||| |||||||||||||
Sbjct: 292 caaggggaatgactttcagttcttgccgttcggggcaggacgaaggatgtgccc 239
Score = 38.2 bits (19), Expect = 0.33
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 215 aagctacaagccgaggtgaggag 237
|||||||||| ||||||||||||
Sbjct: 598 aagctacaagacgaggtgaggag 576
>gb|AV922276.1|AV922276 AV922276 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags3g14 3', mRNA sequence
Length = 462
Score = 44.1 bits (22), Expect = 0.005
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 485 gagcgcttcatggagggcggcagtgccgcagccatgga 522
|||||||||||| | ||||||||||| || ||||||||
Sbjct: 459 gagcgcttcatgcaaggcggcagtgctgcggccatgga 422
>gb|BJ464550.1|BJ464550 BJ464550 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags34o15 5', mRNA sequence
Length = 380
Score = 44.1 bits (22), Expect = 0.005
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 175 cgccatggttcagctgatgcgaaacccccacctgatgaccaagctacaagccgaggtg 232
|||||||| | |||| |||||||| || ||||||||||||| || ||||| ||||||
Sbjct: 195 cgccatggctgagctcatgcgaaagccgaacctgatgaccaaacttcaagctgaggtg 252
>gb|AL504503.1|AL504503 AL504503 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05H19V 5', mRNA sequence
Length = 700
Score = 42.1 bits (21), Expect = 0.021
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 470 gaggagttcatgcccgagcgcttcatgga 498
|||||||||||||| ||||| ||||||||
Sbjct: 128 gaggagttcatgccggagcggttcatgga 156
>gb|AL504075.1|AL504075 AL504075 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW04C03V 5', mRNA sequence
Length = 636
Score = 38.2 bits (19), Expect = 0.33
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 15 gtgacgctgacgctgacgctgacggggagga 45
|||||||||| |||| || ||||||||||||
Sbjct: 217 gtgacgctgatgctgtcgttgacggggagga 187
>gb|BI957283.1|BI957283 HVSMEn0008K04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0008K04f, mRNA sequence
Length = 650
Score = 38.2 bits (19), Expect = 0.33
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 15 gtgacgctgacgctgacgctgacggggagga 45
|||||||||| |||| || ||||||||||||
Sbjct: 225 gtgacgctgatgctgtcgttgacggggagga 195
>gb|BG343142.2|BG343142 HVSMEg0002L08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0002L08f, mRNA sequence
Length = 780
Score = 38.2 bits (19), Expect = 0.33
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 15 gtgacgctgacgctgacgctgacggggagga 45
|||||||||| |||| || ||||||||||||
Sbjct: 234 gtgacgctgatgctgtcgttgacggggagga 204
>gb|AV912854.1|AV912854 AV912854 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags10j16 5', mRNA sequence
Length = 617
Score = 38.2 bits (19), Expect = 0.33
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 215 aagctacaagccgaggtgaggag 237
|||||||||| ||||||||||||
Sbjct: 297 aagctacaagacgaggtgaggag 319
>gb|AV914194.1|AV914194 AV914194 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags5c03 5', mRNA sequence
Length = 545
Score = 38.2 bits (19), Expect = 0.33
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 15 gtgacgctgacgctgacgctgacggggagga 45
|||||||||| |||| || ||||||||||||
Sbjct: 203 gtgacgctgatgctgtcgttgacggggagga 173
>gb|AV921527.1|AV921527 AV921527 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23l19 3', mRNA sequence
Length = 598
Score = 38.2 bits (19), Expect = 0.33
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 467 gccgaggagttcatgcccgagcgcttc 493
||||| ||||||| |||||||||||||
Sbjct: 469 gccgacgagttcaggcccgagcgcttc 443
>gb|AV922603.1|AV922603 AV922603 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18n15 3', mRNA sequence
Length = 615
Score = 38.2 bits (19), Expect = 0.33
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 467 gccgaggagttcatgcccgagcgcttc 493
||||| ||||||| |||||||||||||
Sbjct: 486 gccgacgagttcaggcccgagcgcttc 460
>gb|BM817083.1|BM817083 HC01F04_T3.ab1 HC Hordeum vulgare subsp. vulgare cDNA clone
HC01F04_T3.ab1 similar to Steroid
17-alpha-monooxygenase,Unspecific monooxygenase, mRNA
sequence
Length = 786
Score = 38.2 bits (19), Expect = 0.33
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 467 gccgaggagttcatgcccgagcgcttc 493
||||| ||||||| |||||||||||||
Sbjct: 336 gccgacgagttcaggcccgagcgcttc 362
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 79,268
Number of Sequences: 312970
Number of extensions: 79268
Number of successful extensions: 21889
Number of sequences better than 0.5: 60
Number of HSP's better than 0.5 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21776
Number of HSP's gapped (non-prelim): 107
length of query: 613
length of database: 175,134,539
effective HSP length: 19
effective length of query: 594
effective length of database: 169,188,109
effective search space: 100497736746
effective search space used: 100497736746
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)