BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3848939.2.1
(952 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF265428.3|BF265428 HV_CEa0012D19f Hordeum vulgare seedl... 353 7e-096
gb|BE421032.1|BE421032 HWM005.B01 ITEC HWM Barley Leaf Libr... 345 2e-093
gb|BJ447398.1|BJ447398 BJ447398 K. Sato unpublished cDNA li... 313 6e-084
gb|BJ455149.1|BJ455149 BJ455149 K. Sato unpublished cDNA li... 313 6e-084
gb|BJ456207.1|BJ456207 BJ456207 K. Sato unpublished cDNA li... 276 1e-072
gb|BE421843.1|BE421843 HWM015cD.02r ITEC HWM Barley Leaf Li... 274 5e-072
gb|BJ455637.1|BJ455637 BJ455637 K. Sato unpublished cDNA li... 274 5e-072
gb|BJ460586.1|BJ460586 BJ460586 K. Sato unpublished cDNA li... 274 5e-072
gb|BJ447891.1|BJ447891 BJ447891 K. Sato unpublished cDNA li... 262 2e-068
gb|BJ448486.1|BJ448486 BJ448486 K. Sato unpublished cDNA li... 262 2e-068
gb|BJ453038.1|BJ453038 BJ453038 K. Sato unpublished cDNA li... 262 2e-068
gb|BJ448110.1|BJ448110 BJ448110 K. Sato unpublished cDNA li... 234 4e-060
gb|BJ455845.1|BJ455845 BJ455845 K. Sato unpublished cDNA li... 234 4e-060
gb|CD662528.1|CD662528 UCRHV18_02ba05_b1 Drought-stressed D... 218 3e-055
gb|BF264237.3|BF264237 HV_CEa0008O05f Hordeum vulgare seedl... 188 2e-046
gb|BJ461647.1|BJ461647 BJ461647 K. Sato unpublished cDNA li... 161 5e-038
gb|AV909129.1|AV909129 AV909129 K. Sato unpublished cDNA li... 133 1e-029
gb|AV911012.1|AV911012 AV911012 K. Sato unpublished cDNA li... 133 1e-029
gb|AV924239.1|AV924239 AV924239 K. Sato unpublished cDNA li... 133 1e-029
gb|BJ452082.1|BJ452082 BJ452082 K. Sato unpublished cDNA li... 133 1e-029
gb|BJ454629.1|BJ454629 BJ454629 K. Sato unpublished cDNA li... 133 1e-029
gb|AV930309.1|AV930309 AV930309 K. Sato unpublished cDNA li... 127 7e-028
gb|BJ454113.1|BJ454113 BJ454113 K. Sato unpublished cDNA li... 123 1e-026
gb|BJ447126.1|BJ447126 BJ447126 K. Sato unpublished cDNA li... 119 2e-025
gb|BJ466456.1|BJ466456 BJ466456 K. Sato unpublished cDNA li... 119 2e-025
gb|AV912272.1|AV912272 AV912272 K. Sato unpublished cDNA li... 109 2e-022
gb|AV930310.1|AV930310 AV930310 K. Sato unpublished cDNA li... 109 2e-022
gb|BJ459642.1|BJ459642 BJ459642 K. Sato unpublished cDNA li... 109 2e-022
gb|BF627475.2|BF627475 HVSMEb0004P08f Hordeum vulgare seedl... 105 3e-021
gb|BI952837.1|BI952837 HVSMEm0007O18f Hordeum vulgare green... 105 3e-021
gb|AV910093.1|AV910093 AV910093 K. Sato unpublished cDNA li... 103 1e-020
gb|AV925156.1|AV925156 AV925156 K. Sato unpublished cDNA li... 101 4e-020
gb|AV925157.1|AV925157 AV925157 K. Sato unpublished cDNA li... 101 4e-020
gb|CB878951.1|CB878951 HP10G17T HP Hordeum vulgare subsp. v... 100 2e-019
gb|BI952309.1|BI952309 HVSMEm0005N14f Hordeum vulgare green... 98 6e-019
gb|BJ463507.1|BJ463507 BJ463507 K. Sato unpublished cDNA li... 98 6e-019
gb|BG299400.1|BG299400 HVSMEa0019M24f Hordeum vulgare seedl... 80 2e-013
gb|BG299439.1|BG299439 HVSMEa0020A08f Hordeum vulgare seedl... 78 6e-013
gb|BF623113.2|BF623113 HVSMEa0014H10f Hordeum vulgare seedl... 76 2e-012
gb|BF267554.3|BF267554 HV_CEa0018E06f Hordeum vulgare seedl... 70 1e-010
gb|AL505633.1|AL505633 AL505633 Hordeum vulgare Barke roots... 62 4e-008
gb|BF255418.3|BF255418 HVSMEf0006M22f Hordeum vulgare seedl... 62 4e-008
gb|BQ467975.1|BQ467975 HR01I11r HR Hordeum vulgare subsp. v... 62 4e-008
gb|BM376778.2|BM376778 EBem05_SQ003_D10_R embryo, 14 DPA, n... 62 4e-008
gb|CA016183.1|CA016183 HV09O15u HV Hordeum vulgare subsp. v... 62 4e-008
gb|CA018876.1|CA018876 HV09O15r HV Hordeum vulgare subsp. v... 62 4e-008
gb|AL503334.1|AL503334 AL503334 Hordeum vulgare Barke roots... 54 9e-006
gb|AL505285.1|AL505285 AL505285 Hordeum vulgare Barke roots... 54 9e-006
gb|AL505645.1|AL505645 AL505645 Hordeum vulgare Barke roots... 54 9e-006
gb|BF257331.2|BF257331 HVSMEf0012J06f Hordeum vulgare seedl... 54 9e-006
gb|BF256140.2|BF256140 HVSMEf0008N22f Hordeum vulgare seedl... 54 9e-006
gb|BF253395.3|BF253395 HVSMEf0001E23f Hordeum vulgare seedl... 54 9e-006
gb|BF254940.3|BF254940 HVSMEf0005H16f Hordeum vulgare seedl... 54 9e-006
gb|BF257923.3|BF257923 HVSMEf0014E01f Hordeum vulgare seedl... 54 9e-006
gb|BF259425.3|BF259425 HVSMEf0019B06f Hordeum vulgare seedl... 54 9e-006
gb|BF260272.3|BF260272 HVSMEf0021I24f Hordeum vulgare seedl... 54 9e-006
gb|AV912950.1|AV912950 AV912950 K. Sato unpublished cDNA li... 54 9e-006
gb|AV917706.1|AV917706 AV917706 K. Sato unpublished cDNA li... 54 9e-006
gb|AV924386.1|AV924386 AV924386 K. Sato unpublished cDNA li... 54 9e-006
gb|AV925407.1|AV925407 AV925407 K. Sato unpublished cDNA li... 54 9e-006
gb|AV929478.1|AV929478 AV929478 K. Sato unpublished cDNA li... 54 9e-006
gb|AV930561.1|AV930561 AV930561 K. Sato unpublished cDNA li... 54 9e-006
gb|BM816117.1|BM816117 HC113G07_SK.ab1 HC Hordeum vulgare s... 54 9e-006
gb|AJ434083.1|AJ434083 AJ434083 S00002 Hordeum vulgare subs... 54 9e-006
gb|AJ434576.1|AJ434576 AJ434576 S00002 Hordeum vulgare subs... 54 9e-006
gb|AJ436422.1|AJ436422 AJ436422 S00002 Hordeum vulgare subs... 54 9e-006
gb|AJ461779.1|AJ461779 AJ461779 S00002 Hordeum vulgare subs... 54 9e-006
gb|AJ461922.1|AJ461922 AJ461922 S00002 Hordeum vulgare subs... 54 9e-006
gb|AJ462228.1|AJ462228 AJ462228 S00002 Hordeum vulgare subs... 54 9e-006
gb|AJ463257.1|AJ463257 AJ463257 S00002 Hordeum vulgare subs... 54 9e-006
gb|AJ463258.1|AJ463258 AJ463258 S00002 Hordeum vulgare subs... 54 9e-006
gb|BQ467852.1|BQ467852 HR01C06r HR Hordeum vulgare subsp. v... 54 9e-006
gb|BQ467952.1|BQ467952 HR01H05r HR Hordeum vulgare subsp. v... 54 9e-006
gb|BQ468082.1|BQ468082 HR01O09r HR Hordeum vulgare subsp. v... 54 9e-006
gb|BQ468098.1|BQ468098 HR01P02r HR Hordeum vulgare subsp. v... 54 9e-006
gb|BM445070.2|BM445070 EBem09_SQ007_F11_R embryo, 1 Day ger... 54 9e-006
gb|BM443385.2|BM443385 EBro02_SQ003_N22_R root, 3 week, hyd... 54 9e-006
gb|BM370705.2|BM370705 EBro04_SQ001_O14_R root, 3 week, sal... 54 9e-006
gb|BI777848.2|BI777848 EBro08_SQ002_E20_R root, 3 week, dro... 54 9e-006
gb|BQ760636.1|BQ760636 EBro03_SQ003_A21_R root, 3 week, wat... 54 9e-006
gb|BQ763299.1|BQ763299 EBro02_SQ007_K19_R root, 3 week, hyd... 54 9e-006
gb|BQ763329.1|BQ763329 EBro02_SQ007_P23_R root, 3 week, hyd... 54 9e-006
gb|BQ765319.1|BQ765319 EBro03_SQ006_H19_R root, 3 week, wat... 54 9e-006
gb|BQ766691.1|BQ766691 EBro08_SQ006_I21_R root, 3 week, dro... 54 9e-006
gb|CA008281.1|CA008281 HU10H13r HU Hordeum vulgare subsp. v... 54 9e-006
gb|BE420572.1|BE420572 HWM000.C09 ITEC HWM Barley Leaf Libr... 52 3e-005
gb|AL508349.1|AL508349 AL508349 Hordeum vulgare Barke devel... 52 3e-005
gb|AL508694.1|AL508694 AL508694 Hordeum vulgare Barke devel... 52 3e-005
gb|AL509508.1|AL509508 AL509508 Hordeum vulgare Barke devel... 52 3e-005
gb|AL511572.1|AL511572 AL511572 Hordeum vulgare Barke devel... 52 3e-005
gb|BJ448342.1|BJ448342 BJ448342 K. Sato unpublished cDNA li... 52 3e-005
gb|BJ456060.1|BJ456060 BJ456060 K. Sato unpublished cDNA li... 52 3e-005
gb|BQ463291.1|BQ463291 HI04K24r HI Hordeum vulgare subsp. v... 52 3e-005
gb|BQ464379.1|BQ464379 HF02B20r HF Hordeum vulgare subsp. v... 52 3e-005
gb|BQ656814.1|BQ656814 HA02A21u HA Hordeum vulgare subsp. v... 52 3e-005
gb|BI776270.2|BI776270 EBem04_SQ001_F02_R embryo, 12 DPA, n... 52 3e-005
gb|BI779665.2|BI779665 EBem05_SQ001_A01_R embryo, 14 DPA, n... 52 3e-005
gb|BI779670.2|BI779670 EBem05_SQ001_A06_R embryo, 14 DPA, n... 52 3e-005
gb|BM098200.2|BM098200 EBpi03_SQ002_N09_R pistil, 4 DPA, no... 52 3e-005
gb|BU984370.1|BU984370 HF03L21r HF Hordeum vulgare subsp. v... 52 3e-005
gb|BU985271.1|BU985271 HF06K04r HF Hordeum vulgare subsp. v... 52 3e-005
gb|BU987172.1|BU987172 HF14A02r HF Hordeum vulgare subsp. v... 52 3e-005
gb|BU987976.1|BU987976 HF16F02r HF Hordeum vulgare subsp. v... 52 3e-005
gb|BU988772.1|BU988772 HF18K17r HF Hordeum vulgare subsp. v... 52 3e-005
gb|CA022278.1|CA022278 HZ42K16r HZ Hordeum vulgare subsp. v... 52 3e-005
gb|CA024654.1|CA024654 HZ49O19r HZ Hordeum vulgare subsp. v... 52 3e-005
gb|CA025180.1|CA025180 HZ51G24r HZ Hordeum vulgare subsp. v... 52 3e-005
gb|CB858312.1|CB858312 HI06J01w HI Hordeum vulgare subsp. v... 52 3e-005
gb|CB858885.1|CB858885 HI08J20w HI Hordeum vulgare subsp. v... 52 3e-005
gb|CB859638.1|CB859638 HI11B10w HI Hordeum vulgare subsp. v... 52 3e-005
gb|CB859980.1|CB859980 HI12D15w HI Hordeum vulgare subsp. v... 52 3e-005
gb|CK123297.1|CK123297 BES1824103d11 BES1824 Hordeum vulgar... 52 3e-005
gb|CK123693.1|CK123693 BES1824105b19 BES1824 Hordeum vulgar... 52 3e-005
gb|BI954921.1|BI954921 HVSMEm0020H03f Hordeum vulgare green... 50 1e-004
gb|BF255563.3|BF255563 HVSMEf0007D06f Hordeum vulgare seedl... 50 1e-004
gb|BI777839.2|BI777839 EBro08_SQ002_E06_R root, 3 week, dro... 50 1e-004
gb|BM097611.2|BM097611 EBem04_SQ002_D07_R embryo, 12 DPA, n... 48 5e-004
gb|BM375240.2|BM375240 EBem06_SQ002_M19_R embryo, 21 DPA, n... 48 5e-004
gb|CB858919.1|CB858919 HI08L14w HI Hordeum vulgare subsp. v... 48 5e-004
gb|CB858998.1|CB858998 HI08P12w HI Hordeum vulgare subsp. v... 48 5e-004
gb|BF257569.2|BF257569 HVSMEf0013E08f Hordeum vulgare seedl... 46 0.002
gb|AJ461249.1|AJ461249 AJ461249 S00002 Hordeum vulgare subs... 46 0.002
gb|AJ461862.1|AJ461862 AJ461862 S00002 Hordeum vulgare subs... 46 0.002
gb|BJ452042.1|BJ452042 BJ452042 K. Sato unpublished cDNA li... 46 0.002
gb|BJ464281.1|BJ464281 BJ464281 K. Sato unpublished cDNA li... 46 0.002
gb|BJ465037.1|BJ465037 BJ465037 K. Sato unpublished cDNA li... 46 0.002
gb|BJ466728.1|BJ466728 BJ466728 K. Sato unpublished cDNA li... 46 0.002
gb|BJ468105.1|BJ468105 BJ468105 K. Sato unpublished cDNA li... 46 0.002
gb|BQ463438.1|BQ463438 HI05E11r HI Hordeum vulgare subsp. v... 46 0.002
gb|BQ464747.1|BQ464747 HU01E09T HU Hordeum vulgare subsp. v... 46 0.002
gb|BQ465180.1|BQ465180 HU02O01r HU Hordeum vulgare subsp. v... 46 0.002
gb|BQ663198.1|BQ663198 HU01E09w HU Hordeum vulgare subsp. v... 46 0.002
gb|BM369288.2|BM369288 EBem07_SQ003_C11_R embryo, 28 DPA, n... 46 0.002
gb|BM369553.2|BM369553 EBem07_SQ003_P01_R embryo, 28 DPA, n... 46 0.002
gb|BM098563.2|BM098563 EBem08_SQ003_G21_R embryo, 40 DPA, n... 46 0.002
gb|BM098670.2|BM098670 EBem08_SQ003_L21_R embryo, 40 DPA, n... 46 0.002
gb|BI777552.2|BI777552 EBro04_SQ001_J04_R root, 3 week, sal... 46 0.002
gb|BI777804.2|BI777804 EBro08_SQ002_C04_R root, 3 week, dro... 46 0.002
gb|BQ754412.1|BQ754412 EBca01_SQ003_O08_R carpel, pre-anthe... 46 0.002
gb|BU984657.1|BU984657 HF04J15r HF Hordeum vulgare subsp. v... 46 0.002
gb|BU989603.1|BU989603 HF22D02r HF Hordeum vulgare subsp. v... 46 0.002
gb|BU990322.1|BU990322 HF24L02r HF Hordeum vulgare subsp. v... 46 0.002
gb|BU994191.1|BU994191 HM06C01r HM Hordeum vulgare subsp. v... 46 0.002
gb|BU994874.1|BU994874 HM08H11r HM Hordeum vulgare subsp. v... 46 0.002
gb|CA004376.1|CA004376 HS17G12r HS Hordeum vulgare subsp. v... 46 0.002
gb|CA004786.1|CA004786 HS18K24r HS Hordeum vulgare subsp. v... 46 0.002
gb|CA004871.1|CA004871 HS18O20r HS Hordeum vulgare subsp. v... 46 0.002
gb|CA005707.1|CA005707 HU08P16u HU Hordeum vulgare subsp. v... 46 0.002
gb|CA007775.1|CA007775 HU08P16r HU Hordeum vulgare subsp. v... 46 0.002
gb|CA009388.1|CA009388 HU13P20r HU Hordeum vulgare subsp. v... 46 0.002
gb|CB880299.1|CB880299 HM06C01w HM Hordeum vulgare subsp. v... 46 0.002
gb|CB880997.1|CB880997 HM08H11w HM Hordeum vulgare subsp. v... 46 0.002
gb|BF628643.2|BF628643 HVSMEb0006N23f Hordeum vulgare seedl... 44 0.008
gb|BJ459599.1|BJ459599 BJ459599 K. Sato unpublished cDNA li... 44 0.008
gb|BM373778.2|BM373778 EBma03_SQ002_K15_R maternal, 8 DPA, ... 44 0.008
gb|CB859948.1|CB859948 HI12B20w HI Hordeum vulgare subsp. v... 44 0.008
gb|BE420585.1|BE420585 HWM000.D10 ITEC HWM Barley Leaf Libr... 42 0.033
gb|BE420985.1|BE420985 HWM004.F02 ITEC HWM Barley Leaf Libr... 42 0.033
gb|BE421050.1|BE421050 HWM005.C07 ITEC HWM Barley Leaf Libr... 42 0.033
gb|BE421717.1|BE421717 HWM013cE.04r ITEC HWM Barley Leaf Li... 42 0.033
gb|AL500738.1|AL500738 AL500738 Hordeum vulgare Barke roots... 42 0.033
gb|BF625588.2|BF625588 HVSMEa0011K14f Hordeum vulgare seedl... 42 0.033
gb|BF623191.2|BF623191 HVSMEa0015C05f Hordeum vulgare seedl... 42 0.033
gb|BF626724.1|BF626724 HVSMEb0001C21f Hordeum vulgare seedl... 42 0.033
gb|BF618765.2|BF618765 HVSMEc0007L17f Hordeum vulgare seedl... 42 0.033
gb|BI959614.1|BI959614 HVSMEn0020G21f Hordeum vulgare rachi... 42 0.033
gb|BG343557.2|BG343557 HVSMEg0006G04f Hordeum vulgare pre-a... 42 0.033
gb|BM098165.1|BM098165 EBpi03_SQ002_L17_R pistil, 4 DPA, no... 42 0.033
gb|AV909403.1|AV909403 AV909403 K. Sato unpublished cDNA li... 42 0.033
gb|AV911298.1|AV911298 AV911298 K. Sato unpublished cDNA li... 42 0.033
gb|AV911446.1|AV911446 AV911446 K. Sato unpublished cDNA li... 42 0.033
gb|BQ469222.1|BQ469222 HM03M06r HM Hordeum vulgare subsp. v... 42 0.033
gb|BM375844.2|BM375844 EBem06_SQ004_J05_R embryo, 21 DPA, n... 42 0.033
gb|BM100530.2|BM100530 EBma01_SQ005_H21_R maternal, 4 DPA, ... 42 0.033
gb|BI780941.2|BI780941 EBma05_SQ001_J10_R maternal, 12 DPA,... 42 0.033
gb|BM372188.2|BM372188 EBro03_SQ004_E09_R root, 3 week, wat... 42 0.033
gb|BI777995.2|BI777995 EBro07_SQ001_M02_R root, 3 week, red... 42 0.033
gb|BU994411.1|BU994411 HM06P18r HM Hordeum vulgare subsp. v... 42 0.033
gb|BU994797.1|BU994797 HM08D16r HM Hordeum vulgare subsp. v... 42 0.033
gb|BU995059.1|BU995059 HM09B03r HM Hordeum vulgare subsp. v... 42 0.033
gb|CB880582.1|CB880582 HM06P18w HM Hordeum vulgare subsp. v... 42 0.033
gb|CB880919.1|CB880919 HM08D16w HM Hordeum vulgare subsp. v... 42 0.033
gb|CB881200.1|CB881200 HM09B03w HM Hordeum vulgare subsp. v... 42 0.033
gb|BQ463632.1|BQ463632 HI05P11r HI Hordeum vulgare subsp. v... 40 0.13
>gb|BF265428.3|BF265428 HV_CEa0012D19f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0012D19f, mRNA sequence
Length = 827
Score = 353 bits (178), Expect = 7e-096
Identities = 251/274 (91%), Gaps = 1/274 (0%)
Strand = Plus / Plus
Query: 228 cgccgtccacgccgacgggcaagtgccccgtggacacgctgaagctgctggcgtgcgtgg 287
||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 260 cgccgtcgtcgccgacgggcaagtgccccgtggacgtgctgaagctggtggcgtgcgtgg 319
Query: 288 acgcgctcaacggcctcgcgcacgccgttgtcgggaccaacgccagcgacacctgctgcc 347
||||||||||||| | | |||||| || || || ||||||||||||| ||||||||||
Sbjct: 320 acgcgctcaacggggtggtgcacgcggtggtgggcgccaacgccagcgagacctgctgcc 379
Query: 348 cgctgctgtccg-cgtggccgacctcgacgccgcgctctgcctctgcaccaccatcaagg 406
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cgctgctgtccggcgtggccgacctcgacgccgcgctctgcctctgcaccaccatcaagg 439
Query: 407 ccaaggcgctcagcgtcagcctcgtgctccccgtcgccatctccgtgctcgtcaacgagt 466
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 440 ccaaggcgctcaacgtcagcctcgtgctccccgtcgccatctcggtgctcgtcaaccagt 499
Query: 467 gcggcaagcacgtgccctccagcttccagtgccc 500
|||||||||||||||| ||| ||| ||||||||
Sbjct: 500 gcggcaagcacgtgccgtcctcctttcagtgccc 533
>gb|BE421032.1|BE421032 HWM005.B01 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM005.B01, mRNA sequence
Length = 1148
Score = 345 bits (174), Expect = 2e-093
Identities = 229/246 (93%), Gaps = 1/246 (0%)
Strand = Plus / Plus
Query: 238 gccgacgggcaagtgccccgtggacacgctgaagctgctggcgtgcgtggacgcgctcaa 297
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 138 gccgacgggcaagtgccccgtggacgtgctgaagctggtggcgtgcgtggacgcgctcaa 197
Query: 298 cggcctcgcgcacgccgttgtcgggaccaacgccagcgacacctgctgcccgctgctgtc 357
||| | | |||||| || || || ||||||||||||| ||||||||||||||||||||
Sbjct: 198 cggggtggtgcacgcggtggtgggcgccaacgccagcgagacctgctgcccgctgctgtc 257
Query: 358 cg-cgtggccgacctcgacgccgcgctctgcctctgcaccaccatcaaggccaaggcgct 416
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cggcgtggccgacctcgacgccgcgctctgcctctgcaccaccatcaaggccaaggcgct 317
Query: 417 cagcgtcagcctcgtgctccccgtcgccatctccgtgctcgtcaacgagtgcggcaagca 476
|| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 318 caacgtcagcctcgtgctccccgtcgccatctcggtgctcgtcaaccagtgcggcaagca 377
Query: 477 cgtgcc 482
||||||
Sbjct: 378 cgtgcc 383
>gb|BJ447398.1|BJ447398 BJ447398 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak35f14 5', mRNA sequence
Length = 540
Score = 313 bits (158), Expect = 6e-084
Identities = 225/246 (91%), Gaps = 1/246 (0%)
Strand = Plus / Plus
Query: 256 cgtggacacgctgaagctgctggcgtgcgtggacgcgctcaacggcctcgcgcacgccgt 315
||||||| |||||||||| ||||||||||||||||||||||||| | | |||||| ||
Sbjct: 12 cgtggacgtgctgaagctggtggcgtgcgtggacgcgctcaacggggtggtgcacgcggt 71
Query: 316 tgtcgggaccaacgccagcgacacctgctgcccgctgctgtccg-cgtggccgacctcga 374
|| || ||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 72 ggtgggcgccaacgccagcgagacctgctgcccgctgctgtccggcgtggccgacctcga 131
Query: 375 cgccgcgctctgcctctgcaccaccatcaaggccaaggcgctcagcgtcagcctcgtgct 434
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 132 cgccgcgctctgcctctgcaccaccatcaaggccaaggcgcttaacgtcagcctcgtgct 191
Query: 435 ccccgtcgccatctccgtgctcgtcaacgagtgcggcaagcacgtgccctccagcttcca 494
||||||||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||
Sbjct: 192 ccccgtcgccatctcggtgctcgtcaaccagtgcggcaagcacgtgccgtcctccttcca 251
Query: 495 gtgccc 500
||||||
Sbjct: 252 gtgccc 257
>gb|BJ455149.1|BJ455149 BJ455149 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak35f14 3', mRNA sequence
Length = 564
Score = 313 bits (158), Expect = 6e-084
Identities = 225/246 (91%), Gaps = 1/246 (0%)
Strand = Plus / Minus
Query: 256 cgtggacacgctgaagctgctggcgtgcgtggacgcgctcaacggcctcgcgcacgccgt 315
||||||| |||||||||| ||||||||||||||||||||||||| | | |||||| ||
Sbjct: 563 cgtggacgtgctgaagctggtggcgtgcgtggacgcgctcaacggggtggtgcacgcggt 504
Query: 316 tgtcgggaccaacgccagcgacacctgctgcccgctgctgtccg-cgtggccgacctcga 374
|| || ||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 503 ggtgggcgccaacgccagcgagacctgctgcccgctgctgtccggcgtggccgacctcga 444
Query: 375 cgccgcgctctgcctctgcaccaccatcaaggccaaggcgctcagcgtcagcctcgtgct 434
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 443 cgccgcgctctgcctctgcaccaccatcaaggccaaggcgcttaacgtcagcctcgtgct 384
Query: 435 ccccgtcgccatctccgtgctcgtcaacgagtgcggcaagcacgtgccctccagcttcca 494
||||||||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||
Sbjct: 383 ccccgtcgccatctcggtgctcgtcaaccagtgcggcaagcacgtgccgtcctccttcca 324
Query: 495 gtgccc 500
||||||
Sbjct: 323 gtgccc 318
>gb|BJ456207.1|BJ456207 BJ456207 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20c05 3', mRNA sequence
Length = 488
Score = 276 bits (139), Expect = 1e-072
Identities = 197/215 (91%), Gaps = 1/215 (0%)
Strand = Plus / Minus
Query: 287 gacgcgctcaacggcctcgcgcacgccgttgtcgggaccaacgccagcgacacctgctgc 346
|||||||||||||| | | |||||| || || || ||||||||||||| |||||||||
Sbjct: 488 gacgcgctcaacggggtggtgcacgcggtggtgggcgccaacgccagcgagacctgctgc 429
Query: 347 ccgctgctgtccg-cgtggccgacctcgacgccgcgctctgcctctgcaccaccatcaag 405
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ccgctgctgtccggcgtggccgacctcgacgccgcgctctgcctctgcaccaccatcaag 369
Query: 406 gccaaggcgctcagcgtcagcctcgtgctccccgtcgccatctccgtgctcgtcaacgag 465
||||||||||| | |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 368 gccaaggcgcttaacgtcagcctcgtgctccccgtcgccatctcggtgctcgtcaaccag 309
Query: 466 tgcggcaagcacgtgccctccagcttccagtgccc 500
||||||||||||||||| ||| ||||||||||||
Sbjct: 308 tgcggcaagcacgtgccgtcctccttccagtgccc 274
>gb|BE421843.1|BE421843 HWM015cD.02r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM015cD.02, mRNA sequence
Length = 830
Score = 274 bits (138), Expect = 5e-072
Identities = 169/178 (94%), Gaps = 1/178 (0%)
Strand = Plus / Plus
Query: 324 ccaacgccagcgacacctgctgcccgctgctgtccg-cgtggccgacctcgacgccgcgc 382
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 141 ccaacgccagcgagacctgctgcccgctgctgtccggcgtggccgacctcgacgccgcgc 200
Query: 383 tctgcctctgcaccaccatcaaggccaaggcgctcagcgtcagcctcgtgctccccgtcg 442
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 tctgcctctgcaccaccatcaaggccaaggcgctcaacgtcagcctcgtgctccccgtcg 260
Query: 443 ccatctccgtgctcgtcaacgagtgcggcaagcacgtgccctccagcttccagtgccc 500
||||||| |||||||||||| ||||||||||||||||||| ||| ||| ||||||||
Sbjct: 261 ccatctcggtgctcgtcaaccagtgcggcaagcacgtgccgtcctcctttcagtgccc 318
>gb|BJ455637.1|BJ455637 BJ455637 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17k09 3', mRNA sequence
Length = 477
Score = 274 bits (138), Expect = 5e-072
Identities = 169/178 (94%), Gaps = 1/178 (0%)
Strand = Plus / Minus
Query: 324 ccaacgccagcgacacctgctgcccgctgctgtccg-cgtggccgacctcgacgccgcgc 382
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 454 ccaacgccagcgagacctgctgcccgctgctgtccggcgtggccgacctcgacgccgcgc 395
Query: 383 tctgcctctgcaccaccatcaaggccaaggcgctcagcgtcagcctcgtgctccccgtcg 442
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 394 tctgcctctgcaccaccatcaaggccaaggcgcttaacgtcagcctcgtgctccccgtcg 335
Query: 443 ccatctccgtgctcgtcaacgagtgcggcaagcacgtgccctccagcttccagtgccc 500
||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct: 334 ccatctcggtgctcgtcaaccagtgcggcaagcacgtgccgtcctccttccagtgccc 277
>gb|BJ460586.1|BJ460586 BJ460586 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41g13 3', mRNA sequence
Length = 477
Score = 274 bits (138), Expect = 5e-072
Identities = 169/178 (94%), Gaps = 1/178 (0%)
Strand = Plus / Minus
Query: 324 ccaacgccagcgacacctgctgcccgctgctgtccg-cgtggccgacctcgacgccgcgc 382
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 454 ccaacgccagcgagacctgctgcccgctgctgtccggcgtggccgacctcgacgccgcgc 395
Query: 383 tctgcctctgcaccaccatcaaggccaaggcgctcagcgtcagcctcgtgctccccgtcg 442
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 394 tctgcctctgcaccaccatcaaggccaaggcgcttaacgtcagcctcgtgctccccgtcg 335
Query: 443 ccatctccgtgctcgtcaacgagtgcggcaagcacgtgccctccagcttccagtgccc 500
||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct: 334 ccatctcggtgctcgtcaaccagtgcggcaagcacgtgccgtcctccttccagtgccc 277
>gb|BJ447891.1|BJ447891 BJ447891 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak17k09 5', mRNA sequence
Length = 500
Score = 262 bits (132), Expect = 2e-068
Identities = 169/179 (94%), Gaps = 2/179 (1%)
Strand = Plus / Plus
Query: 324 ccaacgccagcga-cacctgctgcccgctgctgtccg-cgtggccgacctcgacgccgcg 381
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 24 ccaacgccagcgagnacctgctgcccgctgctgtccggcgtggccgacctcgacgccgcg 83
Query: 382 ctctgcctctgcaccaccatcaaggccaaggcgctcagcgtcagcctcgtgctccccgtc 441
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 84 ctctgcctctgcaccaccatcaaggccaaggcgcttaacgtcagcctcgtgctccccgtc 143
Query: 442 gccatctccgtgctcgtcaacgagtgcggcaagcacgtgccctccagcttccagtgccc 500
|||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct: 144 gccatctcggtgctcgtcaaccagtgcggcaagcacgtgccgtcctccttccagtgccc 202
>gb|BJ448486.1|BJ448486 BJ448486 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak20c05 5', mRNA sequence
Length = 504
Score = 262 bits (132), Expect = 2e-068
Identities = 196/215 (91%), Gaps = 2/215 (0%)
Strand = Plus / Plus
Query: 288 acgcgctcaacggcctcgcgcacgccgttgtcgggaccaacgccagcga-cacctgctgc 346
||||||||||||| | | |||||| || || || ||||||||||||| |||||||||
Sbjct: 3 acgcgctcaacggggtggtgcacgcggtggtgggcgccaacgccagcgagnacctgctgc 62
Query: 347 ccgctgctgtcc-gcgtggccgacctcgacgccgcgctctgcctctgcaccaccatcaag 405
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 ccgctgctgtccggcgtggccgacctcgacgccgcgctctgcctctgcaccaccatcaag 122
Query: 406 gccaaggcgctcagcgtcagcctcgtgctccccgtcgccatctccgtgctcgtcaacgag 465
||||||||||| | |||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 123 gccaaggcgcttaacgtcagcctcgtgctccccgtcgccatctcggtgctcgtcaaccag 182
Query: 466 tgcggcaagcacgtgccctccagcttccagtgccc 500
||||||||||||||||| ||| ||||||||||||
Sbjct: 183 tgcggcaagcacgtgccgtcctccttccagtgccc 217
>gb|BJ453038.1|BJ453038 BJ453038 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41g13 5', mRNA sequence
Length = 504
Score = 262 bits (132), Expect = 2e-068
Identities = 169/179 (94%), Gaps = 2/179 (1%)
Strand = Plus / Plus
Query: 324 ccaacgccagcga-cacctgctgcccgctgctgtccg-cgtggccgacctcgacgccgcg 381
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 28 ccaacgccagcgagnacctgctgcccgctgctgtccggcgtggccgacctcgacgccgcg 87
Query: 382 ctctgcctctgcaccaccatcaaggccaaggcgctcagcgtcagcctcgtgctccccgtc 441
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 88 ctctgcctctgcaccaccatcaaggccaaggcgcttaacgtcagcctcgtgctccccgtc 147
Query: 442 gccatctccgtgctcgtcaacgagtgcggcaagcacgtgccctccagcttccagtgccc 500
|||||||| |||||||||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct: 148 gccatctcggtgctcgtcaaccagtgcggcaagcacgtgccgtcctccttccagtgccc 206
>gb|BJ448110.1|BJ448110 BJ448110 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak18j05 5', mRNA sequence
Length = 441
Score = 234 bits (118), Expect = 4e-060
Identities = 146/154 (94%), Gaps = 1/154 (0%)
Strand = Plus / Plus
Query: 348 cgctgctgtccg-cgtggccgacctcgacgccgcgctctgcctctgcaccaccatcaagg 406
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgctgctgtccggcgtggccgacctcgacgccgcgctctgcctctgcaccaccatcaagg 60
Query: 407 ccaaggcgctcagcgtcagcctcgtgctccccgtcgccatctccgtgctcgtcaacgagt 466
|||||||||| | |||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 61 ccaaggcgcttaacgtcagcctcgtgctccccgtcgccatctcggtgctcgtcaaccagt 120
Query: 467 gcggcaagcacgtgccctccagcttccagtgccc 500
|||||||||||||||| ||| ||||||||||||
Sbjct: 121 gcggcaagcacgtgccgtcctccttccagtgccc 154
>gb|BJ455845.1|BJ455845 BJ455845 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak18j05 3', mRNA sequence
Length = 414
Score = 234 bits (118), Expect = 4e-060
Identities = 146/154 (94%), Gaps = 1/154 (0%)
Strand = Plus / Minus
Query: 348 cgctgctgtccg-cgtggccgacctcgacgccgcgctctgcctctgcaccaccatcaagg 406
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 cgctgctgtccggcgtggccgacctcgacgccgcgctctgcctctgcaccaccatcaagg 355
Query: 407 ccaaggcgctcagcgtcagcctcgtgctccccgtcgccatctccgtgctcgtcaacgagt 466
|||||||||| | |||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct: 354 ccaaggcgcttaacgtcagcctcgtgctccccgtcgccatctcggtgctcgtcaaccagt 295
Query: 467 gcggcaagcacgtgccctccagcttccagtgccc 500
|||||||||||||||| ||| ||||||||||||
Sbjct: 294 gcggcaagcacgtgccgtcctccttccagtgccc 261
>gb|CD662528.1|CD662528 UCRHV18_02ba05_b1 Drought-stressed Dicktoo barley epidermis cDNA
library Hordeum vulgare subsp. vulgare cDNA clone
UCRHV18_02ba05, mRNA sequence
Length = 395
Score = 218 bits (110), Expect = 3e-055
Identities = 134/142 (94%)
Strand = Plus / Minus
Query: 359 gcgtggccgacctcgacgccgcgctctgcctctgcaccaccatcaaggccaaggcgctca 418
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gcgtggccgacctagacgccgcgctctgcctctgcaccaccatcaaggccaaggcgctca 332
Query: 419 gcgtcagcctcgtgctccccgtcgccatctccgtgctcgtcaacgagtgcggcaagcacg 478
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 331 acgtcagcctcgtgctccccgtcgccatctcggtgctcgtcaaccagtgcggcaagcacg 272
Query: 479 tgccctccagcttccagtgccc 500
|||| ||| ||| ||||||||
Sbjct: 271 tgccgtcctcctttcagtgccc 250
>gb|BF264237.3|BF264237 HV_CEa0008O05f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0008O05f, mRNA sequence
Length = 611
Score = 188 bits (95), Expect = 2e-046
Identities = 186/214 (86%), Gaps = 2/214 (0%)
Strand = Plus / Plus
Query: 228 cgccgtccacgccgacgggcaagtgccccgtggacacgctgaagctgctggcgtgcgtgg 287
||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 255 cgccgtcgtcgccgacgggcaagtgccccgtggacgtgctgaagctggtggcgtgcgtgg 314
Query: 288 acgcgctcaacggcctcgcgcacgccgttgtcgggaccaacgccagcgacacctgctgcc 347
||||||||||||| | | |||||| | || || | ||||||||||| ||||||||||
Sbjct: 315 acgcgctcaacggggtggtgcacgcgggggtgggcgctaacgccagcgagacctgctgcc 374
Query: 348 cgctgctgtcc-gcgtggccgacctcgacgccgcgctctgcctctgcaccaccatcaagg 406
||||||||||| | ||||||||||| || ||||||||||||| ||||||||| | ||||
Sbjct: 375 cgctgctgtccggggtggccgacctanacaccgcgctctgcctttgcaccacc-ttaagg 433
Query: 407 ccaaggcgctcagcgtcagcctcgtgctccccgt 440
||||||||||| ||||||||| |||||||||||
Sbjct: 434 gcaaggcgctcaacgtcagcctggtgctccccgt 467
>gb|BJ461647.1|BJ461647 BJ461647 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak46c18 3', mRNA sequence
Length = 382
Score = 161 bits (81), Expect = 5e-038
Identities = 102/109 (93%)
Strand = Plus / Minus
Query: 392 gcaccaccatcaaggccaaggcgctcagcgtcagcctcgtgctccccgtcgccatctccg 451
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
Sbjct: 381 gcaccaccatcaaggccaaggcgcttaacgtcagcctcgtgctccccgtcgccatctcgg 322
Query: 452 tgctcgtcaacgagtgcggcaagcacgtgccctccagcttccagtgccc 500
||||||||||| ||||||||||||||||||| ||| ||||||||||||
Sbjct: 321 tgctcgtcaaccagtgcggcaagcacgtgccgtcctccttccagtgccc 273
>gb|AV909129.1|AV909129 AV909129 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11l03 5', mRNA sequence
Length = 629
Score = 133 bits (67), Expect = 1e-029
Identities = 182/219 (83%), Gaps = 1/219 (0%)
Strand = Plus / Plus
Query: 245 ggcaagtgccccgtggacacgctgaagctgctggcgtgcgtggacgcgctcaacggcctc 304
|||||||||||| | ||||| ||||| ||| ||| |||||||||||||||| |||| ||
Sbjct: 213 ggcaagtgccccatcgacaccctgaaactgttggggtgcgtggacgcgctcgacgggctg 272
Query: 305 gcgcacgccgttgtcgggaccaacgccagcgacacctgctgcccgctgctgtccg-cgtg 363
|||||| | |||| | ||| |||||||||| || ||||||||| | |||| ||||
Sbjct: 273 ctgcacgcgctaatcggcagcaatgccagcgacaaatgttgcccgctgttatccggcgtg 332
Query: 364 gccgacctcgacgccgcgctctgcctctgcaccaccatcaaggccaaggcgctcagcgtc 423
|| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct: 333 gctgacctcgacgcagcgctctgcctctgcaccaccatcaagctcaaggcgctcaacatc 392
Query: 424 agcctcgtgctccccgtcgccatctccgtgctcgtcaac 462
| ||||||||| ||| | |||||| ||||||||||||
Sbjct: 393 aacctcgtgctgcccattgccatcgaggtgctcgtcaac 431
>gb|AV911012.1|AV911012 AV911012 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11l03 3', mRNA sequence
Length = 580
Score = 133 bits (67), Expect = 1e-029
Identities = 182/219 (83%), Gaps = 1/219 (0%)
Strand = Plus / Minus
Query: 245 ggcaagtgccccgtggacacgctgaagctgctggcgtgcgtggacgcgctcaacggcctc 304
|||||||||||| | ||||| ||||| ||| ||| |||||||||||||||| |||| ||
Sbjct: 527 ggcaagtgccccatcgacaccctgaaactgttggggtgcgtggacgcgctcgacgggctg 468
Query: 305 gcgcacgccgttgtcgggaccaacgccagcgacacctgctgcccgctgctgtccg-cgtg 363
|||||| | |||| | ||| |||||||||| || ||||||||| | |||| ||||
Sbjct: 467 ctgcacgcgctaatcggcagcaatgccagcgacaaatgttgcccgctgttatccggcgtg 408
Query: 364 gccgacctcgacgccgcgctctgcctctgcaccaccatcaaggccaaggcgctcagcgtc 423
|| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct: 407 gctgacctcgacgcagcgctctgcctctgcaccaccatcaagctcaaggcgctcaacatc 348
Query: 424 agcctcgtgctccccgtcgccatctccgtgctcgtcaac 462
| ||||||||| ||| | |||||| ||||||||||||
Sbjct: 347 aacctcgtgctgcccattgccatcgaggtgctcgtcaac 309
>gb|AV924239.1|AV924239 AV924239 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd11n13 5', mRNA sequence
Length = 685
Score = 133 bits (67), Expect = 1e-029
Identities = 182/219 (83%), Gaps = 1/219 (0%)
Strand = Plus / Plus
Query: 245 ggcaagtgccccgtggacacgctgaagctgctggcgtgcgtggacgcgctcaacggcctc 304
|||||||||||| | ||||| ||||| ||| ||| |||||||||||||||| |||| ||
Sbjct: 213 ggcaagtgccccatcgacaccctgaaactgttggggtgcgtggacgcgctcgacgggctg 272
Query: 305 gcgcacgccgttgtcgggaccaacgccagcgacacctgctgcccgctgctgtccg-cgtg 363
|||||| | |||| | ||| |||||||||| || ||||||||| | |||| ||||
Sbjct: 273 ctgcacgcgctaatcggcagcaatgccagcgacaaatgttgcccgctgttatccggcgtg 332
Query: 364 gccgacctcgacgccgcgctctgcctctgcaccaccatcaaggccaaggcgctcagcgtc 423
|| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct: 333 gctgacctcgacgcagcgctctgcctctgcaccaccatcaagctcaaggcgctcaacatc 392
Query: 424 agcctcgtgctccccgtcgccatctccgtgctcgtcaac 462
| ||||||||| ||| | |||||| ||||||||||||
Sbjct: 393 aacctcgtgctgcccattgccatcgaggtgctcgtcaac 431
>gb|BJ452082.1|BJ452082 BJ452082 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak37l03 5', mRNA sequence
Length = 637
Score = 133 bits (67), Expect = 1e-029
Identities = 182/219 (83%), Gaps = 1/219 (0%)
Strand = Plus / Plus
Query: 245 ggcaagtgccccgtggacacgctgaagctgctggcgtgcgtggacgcgctcaacggcctc 304
|||||||||||| | ||||| ||||| ||| ||| |||||||||||||||| |||| ||
Sbjct: 220 ggcaagtgccccatcgacaccctgaaactgttggggtgcgtggacgcgctcgacgggctg 279
Query: 305 gcgcacgccgttgtcgggaccaacgccagcgacacctgctgcccgctgctgtccg-cgtg 363
|||||| | |||| | ||| |||||||||| || ||||||||| | |||| ||||
Sbjct: 280 ctgcacgcgctaatcggcagcaatgccagcgacaaatgttgcccgctgttatccggcgtg 339
Query: 364 gccgacctcgacgccgcgctctgcctctgcaccaccatcaaggccaaggcgctcagcgtc 423
|| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct: 340 gctgacctcgacgcagcgctctgcctctgcaccaccatcaagctcaaggcgctcaacatc 399
Query: 424 agcctcgtgctccccgtcgccatctccgtgctcgtcaac 462
| ||||||||| ||| | |||||| ||||||||||||
Sbjct: 400 aacctcgtgctgcccattgccatcgaggtgctcgtcaac 438
>gb|BJ454629.1|BJ454629 BJ454629 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak14c15 3', mRNA sequence
Length = 866
Score = 133 bits (67), Expect = 1e-029
Identities = 182/219 (83%), Gaps = 1/219 (0%)
Strand = Plus / Minus
Query: 245 ggcaagtgccccgtggacacgctgaagctgctggcgtgcgtggacgcgctcaacggcctc 304
|||||||||||| | ||||| ||||| ||| ||| |||||||||||||||| |||| ||
Sbjct: 452 ggcaagtgccccatcgacaccctgaaactgttggggtgcgtggacgcgctcgacgggctg 393
Query: 305 gcgcacgccgttgtcgggaccaacgccagcgacacctgctgcccgctgctgtccg-cgtg 363
|||||| | |||| | ||| |||||||||| || ||||||||| | |||| ||||
Sbjct: 392 ctgcacgcgctaatcggcagcaatgccagcgacaaatgttgcccgctgttatccggcgtg 333
Query: 364 gccgacctcgacgccgcgctctgcctctgcaccaccatcaaggccaaggcgctcagcgtc 423
|| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct: 332 gctgacctcgacgcagcgctctgcctctgcaccaccatcaagctcaaggcgctcaacatc 273
Query: 424 agcctcgtgctccccgtcgccatctccgtgctcgtcaac 462
| ||||||||| ||| | |||||| ||||||||||||
Sbjct: 272 aacctcgtgctgcccattgccatcgaggtgctcgtcaac 234
Score = 69.9 bits (35), Expect = 1e-010
Identities = 119/147 (80%), Gaps = 1/147 (0%)
Strand = Plus / Minus
Query: 329 gccagcgacacctgctgcccgctgctgtccgc-gtggccgacctcgacgccgcgctctgc 387
|||||||||| || |||||||| |||||| ||||||| | | ||||||||||| |||
Sbjct: 815 gccagcgacagttgttgcccgctcttgtccggtgtggccggcntngacgccgcgctntgc 756
Query: 388 ctctgcaccaccatcaaggccaaggcgctcagcgtcagcctcgtgctccccgtcgccatc 447
| |||||||||||| || ||||||||||| | ||| | ||||||| || ||||||||
Sbjct: 755 ttttgcaccaccatcgagctcaaggcgctcaacatcaacntcgtgcttccaatcgccatc 696
Query: 448 tccgtgctcgtcaacgagtgcggcaag 474
|||||||||||| | |||||||||
Sbjct: 695 caagtgctcgtcaaccaatgcggcaag 669
>gb|AV930309.1|AV930309 AV930309 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd21p03 3', mRNA sequence
Length = 748
Score = 127 bits (64), Expect = 7e-028
Identities = 181/219 (82%), Gaps = 1/219 (0%)
Strand = Plus / Minus
Query: 245 ggcaagtgccccgtggacacgctgaagctgctggcgtgcgtggacgcgctcaacggcctc 304
|||||||||||| | ||||| ||||| ||| ||| ||||||| |||||||| |||| ||
Sbjct: 374 ggcaagtgccccatcgacaccctgaaactgttggggtgcgtgnacgcgctcgacgggctg 315
Query: 305 gcgcacgccgttgtcgggaccaacgccagcgacacctgctgcccgctgctgtccg-cgtg 363
|||||| | |||| | ||| |||||||||| || ||||||||| | |||| ||||
Sbjct: 314 ctgcacgcgctaatcggcagcaatgccagcgacaaatgttgcccgctgttatccggcgtg 255
Query: 364 gccgacctcgacgccgcgctctgcctctgcaccaccatcaaggccaaggcgctcagcgtc 423
|| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| | ||
Sbjct: 254 gctgacctcgacgcagcgctctgcctctgcaccaccatcaagctcaaggcgctcaacatc 195
Query: 424 agcctcgtgctccccgtcgccatctccgtgctcgtcaac 462
| ||||||||| ||| | |||||| ||||||||||||
Sbjct: 194 aacctcgtgctgcccattgccatcgaggtgctcgtcaac 156
Score = 46.1 bits (23), Expect = 0.002
Identities = 63/74 (85%), Gaps = 2/74 (2%)
Strand = Plus / Minus
Query: 329 gccagcgacacctgctgcccgctgctgtccgc-gtggccgacctcgacgccg-cgctctg 386
|||||||||| || |||||||| |||||| ||||||| ||| ||||||| |||||||
Sbjct: 740 gccagcgacagttgttgcccgctcttgtccggtgtggccggcctngacgccggcgctctg 681
Query: 387 cctctgcaccacca 400
||| ||||||||||
Sbjct: 680 cctttgcaccacca 667
>gb|BJ454113.1|BJ454113 BJ454113 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak46c18 5', mRNA sequence
Length = 377
Score = 123 bits (62), Expect = 1e-026
Identities = 83/90 (92%)
Strand = Plus / Plus
Query: 411 ggcgctcagcgtcagcctcgtgctccccgtcgccatctccgtgctcgtcaacgagtgcgg 470
|||||| | |||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1 ggcgcttaacgtcagcctcgtgctccccgtcgccatctcggtgctcgtcaaccagtgcgg 60
Query: 471 caagcacgtgccctccagcttccagtgccc 500
|||||||||||| ||| ||||||||||||
Sbjct: 61 caagcacgtgccgtcctccttccagtgccc 90
>gb|BJ447126.1|BJ447126 BJ447126 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak14c15 5', mRNA sequence
Length = 682
Score = 119 bits (60), Expect = 2e-025
Identities = 182/220 (82%), Gaps = 2/220 (0%)
Strand = Plus / Plus
Query: 245 ggcaagtgccccgtggacacgctgaagctgctggcgtgcgtggacgcgctcaacggcctc 304
|||||||||||| | ||||| ||||| ||| ||| |||||||||||||||| |||| ||
Sbjct: 424 ggcaagtgccccatcgacaccctgaaactgttggggtgcgtggacgcgctcgacgggctg 483
Query: 305 gcgcacgccgttgtcgggaccaacgccag-cgacacctgctgcccgctgctgtccg-cgt 362
|||||| | |||| | ||| ||||| ||||| || ||||||||| | |||| |||
Sbjct: 484 ctgcacgcgctaatcggcagcaatgccaggcgacaaatgttgcccgctgttatccggcgt 543
Query: 363 ggccgacctcgacgccgcgctctgcctctgcaccaccatcaaggccaaggcgctcagcgt 422
||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| | |
Sbjct: 544 ggctgacctcgacgcagcgctctgcctctgcaccaccatcaagctcaaggcgctcaacat 603
Query: 423 cagcctcgtgctccccgtcgccatctccgtgctcgtcaac 462
|| ||||||||| ||| | |||||| ||||||||||||
Sbjct: 604 caacctcgtgctgcccattgccatcgaggtgctcgtcaac 643
Score = 109 bits (55), Expect = 2e-022
Identities = 125/147 (85%), Gaps = 1/147 (0%)
Strand = Plus / Plus
Query: 329 gccagcgacacctgctgcccgctgctgtccgc-gtggccgacctcgacgccgcgctctgc 387
|||||||||| || |||||||| |||||| ||||||| |||||||||||||||||||
Sbjct: 67 gccagcgacagttgttgcccgctcttgtccggtgtggccggcctcgacgccgcgctctgc 126
Query: 388 ctctgcaccaccatcaaggccaaggcgctcagcgtcagcctcgtgctccccgtcgccatc 447
||||||||||||||| || ||||||||||| | ||| ||||||||| || ||||||||
Sbjct: 127 ctctgcaccaccatcgagctcaaggcgctcaacatcaacctcgtgcttccaatcgccatc 186
Query: 448 tccgtgctcgtcaacgagtgcggcaag 474
|||||||||||| | |||||||||
Sbjct: 187 caagtgctcgtcaaccaatgcggcaag 213
>gb|BJ466456.1|BJ466456 BJ466456 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32d05 3', mRNA sequence
Length = 866
Score = 119 bits (60), Expect = 2e-025
Identities = 169/204 (82%), Gaps = 1/204 (0%)
Strand = Plus / Minus
Query: 260 gacacgctgaagctgctggcgtgcgtggacgcgctcaacggcctcgcgcacgccgttgtc 319
||||| ||||| ||| ||| |||||||||||||||| |||| || |||||| | ||
Sbjct: 505 gacaccctgaaactgttggggtgcgtggacgcgctcgacgggctgctgcacgcgctaatc 446
Query: 320 gggaccaacgccagcgacacctgctgcccgctgctgtcc-gcgtggccgacctcgacgcc 378
|| | ||| |||||||||| || ||||||||| | ||| ||||||| |||||||||||
Sbjct: 445 ggcagcaatgccagcgacaaatgttgcccgctgttatccggcgtggctgacctcgacgca 386
Query: 379 gcgctctgcctctgcaccaccatcaaggccaaggcgctcagcgtcagcctcgtgctcccc 438
||||||||||||||||||||||||||| ||||||||||| | ||| ||||||||| |||
Sbjct: 385 gcgctctgcctctgcaccaccatcaagctcaaggcgctcaacatcaacctcgtgctgccc 326
Query: 439 gtcgccatctccgtgctcgtcaac 462
| |||||| ||||||||||||
Sbjct: 325 attgccatcgaggtgctcgtcaac 302
>gb|AV912272.1|AV912272 AV912272 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak3b17 3', mRNA sequence
Length = 259
Score = 109 bits (55), Expect = 2e-022
Identities = 116/135 (85%), Gaps = 1/135 (0%)
Strand = Plus / Minus
Query: 329 gccagcgacacctgctgcccgctgctgtccg-cgtggccgacctcgacgccgcgctctgc 387
|||||||||| || ||||||||| | |||| |||||| ||||||||||| |||||||||
Sbjct: 218 gccagcgacaaatgttgcccgctgttatccggcgtggctgacctcgacgcagcgctctgc 159
Query: 388 ctctgcaccaccatcaaggccaaggcgctcagcgtcagcctcgtgctccccgtcgccatc 447
|||||||||||||||||| ||||||||||| | ||| ||||||||| ||| | ||||||
Sbjct: 158 ctctgcaccaccatcaagctcaaggcgctcaacatcaacctcgtgctgcccattgccatc 99
Query: 448 tccgtgctcgtcaac 462
||||||||||||
Sbjct: 98 gaggtgctcgtcaac 84
>gb|AV930310.1|AV930310 AV930310 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd21p04 3', mRNA sequence
Length = 685
Score = 109 bits (55), Expect = 2e-022
Identities = 178/219 (81%), Gaps = 1/219 (0%)
Strand = Plus / Minus
Query: 245 ggcaagtgccccgtggacacgctgaagctgctggcgtgcgtggacgcgctcaacggcctc 304
|||||||||||| | ||||| |||| ||| ||| |||||||||||||||| |||| ||
Sbjct: 375 ggcaagtgccccatcgacaccctganactgttggggtgcgtggacgcgctcgacgggctg 316
Query: 305 gcgcacgccgttgtcgggaccaacgccagcgacacctgctgcccgctgctgtccg-cgtg 363
|||||| | |||| | ||| |||||||||| || ||||||||| | |||| ||||
Sbjct: 315 ctgcacgcgctaatcggcagcaatgccagcgacaaatgttgcccgctgttatccggcgtg 256
Query: 364 gccgacctcgacgccgcgctctgcctctgcaccaccatcaaggccaaggcgctcagcgtc 423
|| |||||||| || ||||||||||| ||||||||||||||| ||||||||||| | ||
Sbjct: 255 gctgacctcgangcagcgctctgcctntgcaccaccatcaagctcaaggcgctcaacatc 196
Query: 424 agcctcgtgctccccgtcgccatctccgtgctcgtcaac 462
| ||||||||| ||| |||||| ||||||||||||
Sbjct: 195 aacctcgtgctgcccantgccatcgaggtgctcgtcaac 157
>gb|BJ459642.1|BJ459642 BJ459642 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak37l03 3', mRNA sequence
Length = 368
Score = 109 bits (55), Expect = 2e-022
Identities = 116/135 (85%), Gaps = 1/135 (0%)
Strand = Plus / Minus
Query: 329 gccagcgacacctgctgcccgctgctgtccg-cgtggccgacctcgacgccgcgctctgc 387
|||||||||| || ||||||||| | |||| |||||| ||||||||||| |||||||||
Sbjct: 343 gccagcgacaaatgttgcccgctgttatccggcgtggctgacctcgacgcagcgctctgc 284
Query: 388 ctctgcaccaccatcaaggccaaggcgctcagcgtcagcctcgtgctccccgtcgccatc 447
|||||||||||||||||| ||||||||||| | ||| ||||||||| ||| | ||||||
Sbjct: 283 ctctgcaccaccatcaagctcaaggcgctcaacatcaacctcgtgctgcccattgccatc 224
Query: 448 tccgtgctcgtcaac 462
||||||||||||
Sbjct: 223 gaggtgctcgtcaac 209
>gb|BF627475.2|BF627475 HVSMEb0004P08f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004P08f, mRNA sequence
Length = 823
Score = 105 bits (53), Expect = 3e-021
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 228 cgccgtccacgccgacgggcaagtgccccgtggacacgctgaagctgctggcgtgcgtgg 287
||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 269 cgccgtcgtcgccgacgggcaagtgccccgtggacgtgctgaagctggtggcgtgcgtgg 328
Query: 288 acgcgctcaacgg 300
|||||||||||||
Sbjct: 329 acgcgctcaacgg 341
>gb|BI952837.1|BI952837 HVSMEm0007O18f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0007O18f, mRNA sequence
Length = 420
Score = 105 bits (53), Expect = 3e-021
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 228 cgccgtccacgccgacgggcaagtgccccgtggacacgctgaagctgctggcgtgcgtgg 287
||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 270 cgccgtcgtcgccgacgggcaagtgccccgtggacgtgctgaagctggtggcgtgcgtgg 329
Query: 288 acgcgctcaacgg 300
|||||||||||||
Sbjct: 330 acgcgctcaacgg 342
>gb|AV910093.1|AV910093 AV910093 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak3b17 5', mRNA sequence
Length = 281
Score = 103 bits (52), Expect = 1e-020
Identities = 91/104 (87%)
Strand = Plus / Plus
Query: 359 gcgtggccgacctcgacgccgcgctctgcctctgcaccaccatcaaggccaaggcgctca 418
||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 11 gcgtggctgacctcgacgcagcgctctgcctctgcaccaccatcaagctcaaggcgctca 70
Query: 419 gcgtcagcctcgtgctccccgtcgccatctccgtgctcgtcaac 462
| ||| ||||||||| ||| | |||||| ||||||||||||
Sbjct: 71 acatcaacctcgtgctgcccattgccatcgaggtgctcgtcaac 114
>gb|AV925156.1|AV925156 AV925156 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd21p03 5', mRNA sequence
Length = 195
Score = 101 bits (51), Expect = 4e-020
Identities = 124/147 (84%), Gaps = 1/147 (0%)
Strand = Plus / Plus
Query: 329 gccagcgacacctgctgcccgctgctgtccgc-gtggccgacctcgacgccgcgctctgc 387
|||||||||| || |||||||| |||||| ||||||| |||||||||||||||||||
Sbjct: 11 gccagcgacagttgttgcccgctcttgtccggtgtggccggcctcgacgccgcgctctgc 70
Query: 388 ctctgcaccaccatcaaggccaaggcgctcagcgtcagcctcgtgctccccgtcgccatc 447
||||||||||||||| || ||||||||||| | ||| ||||||||| || | ||||||
Sbjct: 71 ctctgcaccaccatcgagctcaaggcgctcaacatcaacctcgtgcttccaattgccatc 130
Query: 448 tccgtgctcgtcaacgagtgcggcaag 474
|||||||||||| | |||||||||
Sbjct: 131 caagtgctcgtcaaccaatgcggcaag 157
>gb|AV925157.1|AV925157 AV925157 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd21p04 5', mRNA sequence
Length = 563
Score = 101 bits (51), Expect = 4e-020
Identities = 179/220 (81%), Gaps = 2/220 (0%)
Strand = Plus / Plus
Query: 245 ggcaagtgccccgtggacacgctgaagctgctggcgtgcgtggacgcgctcaacggcctc 304
|||||||||||| | |||| ||||| ||| ||| |||||||||||||||| |||| ||
Sbjct: 305 ggcaagtgccccatcnacaccctgaaactgttggggtgcgtggacgcgctcgacgggctg 364
Query: 305 gcgcacgccgttgtcggg-accaacgccagcgacacctgctgcccgctgctgtccg-cgt 362
|||||| | || || | ||| |||||||||| || ||||||||| | | || |||
Sbjct: 365 ctgcacgcgctaatcaggcagcaatgccagcgacaaatgttgcccgctgttatncggcgt 424
Query: 363 ggccgacctcgacgccgcgctctgcctctgcaccaccatcaaggccaaggcgctcagcgt 422
||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 425 ggctgacctcgacgcagcgctctgcctctgcaccaccatcaagctcaaggcgctcaanat 484
Query: 423 cagcctcgtgctccccgtcgccatctccgtgctcgtcaac 462
|| ||||||||| ||| | |||||| ||||||||||||
Sbjct: 485 caacctcgtgctgcccattgccatcgaggtgctcgtcaac 524
Score = 44.1 bits (22), Expect = 0.008
Identities = 75/94 (79%)
Strand = Plus / Plus
Query: 381 gctctgcctctgcaccaccatcaaggccaaggcgctcagcgtcagcctcgtgctccccgt 440
|||||| ||||||||||||||| || |||| ||||| | ||| ||||||||| || |
Sbjct: 1 gctctgnctctgcaccaccatcgagctnaaggngctcaacatcaacctcgtgcttccaat 60
Query: 441 cgccatctccgtgctcgtcaacgagtgcggcaag 474
|||||| ||||||| |||| | |||||||||
Sbjct: 61 tgccatccaagtgctcgncaaccaatgcggcaag 94
>gb|CB878951.1|CB878951 HP10G17T HP Hordeum vulgare subsp. vulgare cDNA clone HP10G17
5-PRIME, mRNA sequence
Length = 364
Score = 99.6 bits (50), Expect = 2e-019
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 239 ccgacgggcaagtgccccgtggacacgctgaagctgctggcgtgcgtggacgcgctcaac 298
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct: 284 ccgacgggcaagtgccccgtggacgtgctgaagctgctggcgtgagtggacgcgctcaac 343
Query: 299 gg 300
||
Sbjct: 344 gg 345
>gb|BI952309.1|BI952309 HVSMEm0005N14f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0005N14f, mRNA sequence
Length = 427
Score = 97.6 bits (49), Expect = 6e-019
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 228 cgccgtccacgccgacgggcaagtgccccgtggacacgctgaagctgctggcgtgcgtgg 287
||||||| |||||||||||||||||||||||||| |||||| ||| ||||||||||||
Sbjct: 264 cgccgtcgtcgccgacgggcaagtgccccgtggacgtgctgaatctggtggcgtgcgtgg 323
Query: 288 acgcgctcaacgg 300
|||||||||||||
Sbjct: 324 acgcgctcaacgg 336
>gb|BJ463507.1|BJ463507 BJ463507 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags32d05 5', mRNA sequence
Length = 734
Score = 97.6 bits (49), Expect = 6e-019
Identities = 161/197 (81%), Gaps = 1/197 (0%)
Strand = Plus / Plus
Query: 239 ccgacgggcaagtgccccgtggacacgctgaagctgctggcgtgcgtggacgcgctcaac 298
|||| |||||| ||||| || ||||| || | | |||||| |||||||||||| |||||
Sbjct: 460 ccgatgggcaaatgcccagttgacacactaaggttgctggggtgcgtggacgcactcaat 519
Query: 299 ggcctcgcgcacgccgttgtcgggaccaacgccagcgacacctgctgcccgctgctgtcc 358
|| || | |||| | || |||| | || |||||||||| || |||||||| |||||
Sbjct: 520 gggctggtgcacacggtgatcggcagcagtgccagcgacagttgttgcccgctcttgtcc 579
Query: 359 gc-gtggccgacctcgacgccgcgctctgcctctgcaccaccatcaaggccaaggcgctc 417
| ||||||| |||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 580 ggtgtggccggcctcgacgccgcgctctgcctctgcaccaccatcgagctcaaggcgctc 639
Query: 418 agcgtcagcctcgtgct 434
| | ||| |||||||||
Sbjct: 640 aacatcaacctcgtgct 656
Score = 91.7 bits (46), Expect = 4e-017
Identities = 88/102 (86%)
Strand = Plus / Plus
Query: 373 gacgccgcgctctgcctctgcaccaccatcaaggccaaggcgctcagcgtcagcctcgtg 432
||||| || |||||||||||||||||||||||| ||||||||||| | ||| |||||||
Sbjct: 22 gacgctgcactctgcctctgcaccaccatcaagctcaaggcgctcaacatcaacctcgtg 81
Query: 433 ctccccgtcgccatctccgtgctcgtcaacgagtgcggcaag 474
|| ||| |||||||| ||||| |||||| |||||||||||
Sbjct: 82 ctgcccatcgccatccaggtgcttgtcaaccagtgcggcaag 123
>gb|BG299400.1|BG299400 HVSMEa0019M24f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0019M24f, mRNA sequence
Length = 633
Score = 79.8 bits (40), Expect = 2e-013
Identities = 88/104 (84%)
Strand = Plus / Minus
Query: 359 gcgtggccgacctcgacgccgcgctctgcctctgcaccaccatcaaggccaaggcgctca 418
||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||| |||
Sbjct: 454 gcgtggctgacctcgacgcagcgctttgcctctgcaccaccatcaagctcaaggcgttca 395
Query: 419 gcgtcagcctcgtgctccccgtcgccatctccgtgctcgtcaac 462
| ||| ||||||| | ||| | |||||| ||||||||||||
Sbjct: 394 acatcaacctcgtgttgcccattgccatcgaggtgctcgtcaac 351
Score = 46.1 bits (23), Expect = 0.002
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 245 ggcaagtgccccgtggacacgctgaagctgctggcgtgcgtggacgcgctc 295
|||||||||||| | ||||| |||| ||| ||| ||||||||||||||||
Sbjct: 570 ggcaagtgccccatcgacaccttgaaactgttggggtgcgtggacgcgctc 520
>gb|BG299439.1|BG299439 HVSMEa0020A08f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0020A08f, mRNA sequence
Length = 654
Score = 77.8 bits (39), Expect = 6e-013
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 238 gccgacgggcaagtgccccgtggacacgctgaagctgctggcgtgcgtggacgcgctcaa 297
||||||||||||||||| ||||||| |||||| ||| |||||||||||||||| |||||
Sbjct: 278 gccgacgggcaagtgccgcgtggacgtgctgaacctggtggcgtgcgtggacgcactcaa 337
Query: 298 cgg 300
|||
Sbjct: 338 cgg 340
>gb|BF623113.2|BF623113 HVSMEa0014H10f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0014H10f, mRNA sequence
Length = 878
Score = 75.8 bits (38), Expect = 2e-012
Identities = 77/90 (85%)
Strand = Plus / Minus
Query: 385 tgcctctgcaccaccatcaaggccaaggcgctcagcgtcagcctcgtgctccccgtcgcc 444
||||||||||||||||||||| ||||||||||| | ||| ||||||||| ||| |||||
Sbjct: 130 tgcctctgcaccaccatcaagctcaaggcgctcaacatcaacctcgtgctgcccatcgcc 71
Query: 445 atctccgtgctcgtcaacgagtgcggcaag 474
||| ||||| |||||| ||| |||||||
Sbjct: 70 atccaggtgcttgtcaaccagtacggcaag 41
Score = 52.0 bits (26), Expect = 3e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 243 cgggcaagtgccccgtggacacgctgaagctgctggcgtgcgtggacgcgctcaacgg 300
||||||||||||| ||| ||||||| ||| || ||| ||| ||||| |||||||||||
Sbjct: 273 cgggcaagtgcccagtgtacacgctaaagttgttggggtgtgtggatgcgctcaacgg 216
>gb|BF267554.3|BF267554 HV_CEa0018E06f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0018E06f, mRNA sequence
Length = 513
Score = 69.9 bits (35), Expect = 1e-010
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 338 acctgctgcccgctgctgtccgcg-tggccgacctcgacgccgcgctctgcctctgcacc 396
||||||||||| ||| |||||| | ||||||| || |||||||||||||||||||| |||
Sbjct: 369 acctgctgccccctgatgtccggggtggccgaacttgacgccgcgctctgcctctgaacc 428
Query: 397 accatcaaggccaag 411
||||| || ||||||
Sbjct: 429 accatgaaagccaag 443
Score = 60.0 bits (30), Expect = 1e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 240 cgacgggcaagtgccccgtggacacgctgaagctgctggcgtgcgtggacgcgc 293
||||||||||||||||||||||| ||||||||| ||| |||||||||||||
Sbjct: 273 cgacgggcaagtgccccgtggacgtgctgaagcttggggcctgcgtggacgcgc 326
>gb|AL505633.1|AL505633 AL505633 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09B01V 5', mRNA sequence
Length = 473
Score = 61.9 bits (31), Expect = 4e-008
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 366 cgacctcgacgccgcgctctgcctctgcaccaccatcaaggcc 408
|||||| ||||||||| |||||||||||||| |||||||||||
Sbjct: 336 cgacctggacgccgcgatctgcctctgcaccgccatcaaggcc 378
>gb|BF255418.3|BF255418 HVSMEf0006M22f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0006M22f, mRNA sequence
Length = 485
Score = 61.9 bits (31), Expect = 4e-008
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 366 cgacctcgacgccgcgctctgcctctgcaccaccatcaaggcc 408
|||||| ||||||||| |||||||||||||| |||||||||||
Sbjct: 12 cgacctggacgccgcgatctgcctctgcaccgccatcaaggcc 54
>gb|BQ467975.1|BQ467975 HR01I11r HR Hordeum vulgare subsp. vulgare cDNA clone HR01I11
5-PRIME, mRNA sequence
Length = 486
Score = 61.9 bits (31), Expect = 4e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 364 gccgacctcgacgccgcgctctgcctctgcaccaccatcaaggccaa 410
|||||||||||||||||| | |||||||||||| |||||| ||||||
Sbjct: 305 gccgacctcgacgccgcggtgtgcctctgcaccgccatcagggccaa 351
>gb|BM376778.2|BM376778 EBem05_SQ003_D10_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ003_D10 5', mRNA sequence
Length = 482
Score = 61.9 bits (31), Expect = 4e-008
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 366 cgacctcgacgccgcgctctgcctctgcaccaccatcaaggcc 408
|||||| ||||||||| |||||||||||||| |||||||||||
Sbjct: 127 cgacctggacgccgcgatctgcctctgcaccgccatcaaggcc 169
>gb|CA016183.1|CA016183 HV09O15u HV Hordeum vulgare subsp. vulgare cDNA clone HV09O15
3-PRIME, mRNA sequence
Length = 529
Score = 61.9 bits (31), Expect = 4e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 364 gccgacctcgacgccgcgctctgcctctgcaccaccatcaaggccaa 410
|||||||||||||||||| | |||||||||||| |||||| ||||||
Sbjct: 376 gccgacctcgacgccgcggtgtgcctctgcaccgccatcagggccaa 330
>gb|CA018876.1|CA018876 HV09O15r HV Hordeum vulgare subsp. vulgare cDNA clone HV09O15
5-PRIME, mRNA sequence
Length = 638
Score = 61.9 bits (31), Expect = 4e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 364 gccgacctcgacgccgcgctctgcctctgcaccaccatcaaggccaa 410
|||||||||||||||||| | |||||||||||| |||||| ||||||
Sbjct: 305 gccgacctcgacgccgcggtgtgcctctgcaccgccatcagggccaa 351
>gb|AL503334.1|AL503334 AL503334 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01L04T 5', mRNA sequence
Length = 700
Score = 54.0 bits (27), Expect = 9e-006
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 364 gccgacctcgacgccgcgctctgcctctgcaccaccatcaaggccaa 410
||||||||||||||||| | |||||||||||| |||||| ||||||
Sbjct: 285 gccgacctcgacgccgccgtgtgcctctgcaccgccatcagggccaa 331
>gb|AL505285.1|AL505285 AL505285 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07P20V 5', mRNA sequence
Length = 585
Score = 54.0 bits (27), Expect = 9e-006
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 364 gccgacctcgacgccgcgctctgcctctgcaccaccatcaaggccaa 410
||||||||||||||||| | |||||||||||| |||||| ||||||
Sbjct: 301 gccgacctcgacgccgccgtgtgcctctgcaccgccatcagggccaa 347
>gb|AL505645.1|AL505645 AL505645 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW09B14V 5', mRNA sequence
Length = 474
Score = 54.0 bits (27), Expect = 9e-006
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 364 gccgacctcgacgccgcgctctgcctctgcaccaccatcaaggccaa 410
||||||||||||||||| | |||||||||||| |||||| ||||||
Sbjct: 357 gccgacctcgacgccgccgtgtgcctctgcaccgccatcagggccaa 311
>gb|BF257331.2|BF257331 HVSMEf0012J06f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0012J06f, mRNA sequence
Length = 540
Score = 54.0 bits (27), Expect = 9e-006
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 364 gccgacctcgacgccgcgctctgcctctgcaccaccatcaaggccaa 410
||||||||||||||||| | |||||||||||| |||||| ||||||
Sbjct: 274 gccgacctcgacgccgccgtgtgcctctgcaccgccatcagggccaa 320
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 119,862
Number of Sequences: 312970
Number of extensions: 119862
Number of successful extensions: 39715
Number of sequences better than 0.5: 184
Number of HSP's better than 0.5 without gapping: 183
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 39306
Number of HSP's gapped (non-prelim): 382
length of query: 952
length of database: 175,134,539
effective HSP length: 19
effective length of query: 933
effective length of database: 169,188,109
effective search space: 157852505697
effective search space used: 157852505697
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)